assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_902386735.1_UHGG_MGYG-HGUT-02395	NZ_LR698990	Bifidobacterium adolescentis isolate MGYG-HGUT-02395 chromosome 1	1	134089-134214	1	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh	Orphan	TGTCCGATTCTGCAGAATCGGACA	24	0	0	NA	NA	NA	2	2	Orphan	cas3,WYL,csa3,DEDDh	NA|185aa|up_8|NZ_LR698990.1_122543_123098_+,NA|206aa|up_4|NZ_LR698990.1_129554_130172_+,NA	NA|524aa|up_9|NZ_LR698990.1_120622_122194_+	TIGR04226, Fimbrial_subunit_type_2, fimbrial isopeptide formation D2 domain	NA|185aa|up_8|NZ_LR698990.1_122543_123098_+	NA	NA|360aa|up_7|NZ_LR698990.1_123602_124682_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|888aa|up_6|NZ_LR698990.1_125009_127673_+	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|526aa|up_5|NZ_LR698990.1_127769_129347_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|206aa|up_4|NZ_LR698990.1_129554_130172_+	NA	NA|490aa|up_3|NZ_LR698990.1_130356_131826_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|305aa|up_2|NZ_LR698990.1_132006_132921_-	PRK00208, thiG, thiazole synthase; Reviewed	NA|238aa|up_1|NZ_LR698990.1_133077_133791_-	PRK08644, PRK08644, sulfur carrier protein ThiS adenylyltransferase ThiF	NA|65aa|up_0|NZ_LR698990.1_133843_134038_-	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS	NA|323aa|down_0|NZ_LR698990.1_134542_135511_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|164aa|down_1|NZ_LR698990.1_135694_136186_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|584aa|down_2|NZ_LR698990.1_136312_138064_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|614aa|down_3|NZ_LR698990.1_138075_139917_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|327aa|down_4|NZ_LR698990.1_140087_141068_+	cd19092, AKR_BsYcsN_EcYdhF-like, Bacillus subtilis YcsN, Escherichia coli YdhF and similar proteins	NA|320aa|down_5|NZ_LR698990.1_141152_142112_-	pfam02424, ApbE, ApbE family	NA|596aa|down_6|NZ_LR698990.1_142454_144242_+	COG0672, FTR1, High-affinity Fe2+/Pb2+ permease [Inorganic ion transport and metabolism]	NA|220aa|down_7|NZ_LR698990.1_144303_144963_+	pfam10634, Iron_transport, Fe2+ transport protein	NA|424aa|down_8|NZ_LR698990.1_145226_146498_+	pfam10080, DUF2318, Predicted membrane protein (DUF2318)	NA|500aa|down_9|NZ_LR698990.1_146523_148023_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
GCF_902386735.1_UHGG_MGYG-HGUT-02395	NZ_LR698990	Bifidobacterium adolescentis isolate MGYG-HGUT-02395 chromosome 1	2	225833-225911	2	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh	Orphan	CCCATGCCCGGCGGCGGCACCGACAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh	NA|75aa|up_9|NZ_LR698990.1_212105_212330_-,NA|204aa|up_8|NZ_LR698990.1_212520_213132_-,NA|211aa|up_5|NZ_LR698990.1_215243_215876_+,NA|158aa|down_4|NZ_LR698990.1_230453_230927_+	NA|75aa|up_9|NZ_LR698990.1_212105_212330_-	NA	NA|204aa|up_8|NZ_LR698990.1_212520_213132_-	NA	NA|237aa|up_7|NZ_LR698990.1_213251_213962_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|up_6|NZ_LR698990.1_214023_215241_+	COG4564, COG4564, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|211aa|up_5|NZ_LR698990.1_215243_215876_+	NA	NA|848aa|up_4|NZ_LR698990.1_215944_218488_+	COG2815, COG2815, Uncharacterized protein conserved in bacteria [Function unknown]	NA|509aa|up_3|NZ_LR698990.1_218564_220091_-	cd07383, MPP_Dcr2, Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain	NA|637aa|up_2|NZ_LR698990.1_220289_222200_+	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated	NA|705aa|up_1|NZ_LR698990.1_222458_224573_+	cd18818, GH43_GbtXyl43B-like, Glycosyl hydrolase family 43 such as Geobacillus thermoleovorans IT-08 beta-xylosidase/exo-xylanase (GbtXyl43B)	NA|358aa|up_0|NZ_LR698990.1_224600_225674_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|340aa|down_0|NZ_LR698990.1_226013_227033_+	COG3940, COG3940, Predicted beta-xylosidase [General function prediction only]	NA|424aa|down_1|NZ_LR698990.1_227252_228524_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|292aa|down_2|NZ_LR698990.1_228562_229438_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|299aa|down_3|NZ_LR698990.1_229440_230337_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|158aa|down_4|NZ_LR698990.1_230453_230927_+	NA	NA|355aa|down_5|NZ_LR698990.1_231059_232124_+	cd08983, GH43_Bt3655-like, Glycosyl hydrolase family 43 protein such as Bacteroides thetaiotaomicron VPI-5482 arabinofuranosidase Bt3655	NA|769aa|down_6|NZ_LR698990.1_232248_234555_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|381aa|down_7|NZ_LR698990.1_234774_235917_+	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type	NA|393aa|down_8|NZ_LR698990.1_236144_237323_-	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|364aa|down_9|NZ_LR698990.1_237606_238698_+	cd01610, PAP2_like, PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies
GCF_902386735.1_UHGG_MGYG-HGUT-02395	NZ_LR698990	Bifidobacterium adolescentis isolate MGYG-HGUT-02395 chromosome 1	3	461159-461272	3	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh	Orphan	CGTCCGGGTCAGGGCGGCGGCCAGCGT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh	NA|268aa|up_1|NZ_LR698990.1_458283_459087_-,NA|218aa|down_4|NZ_LR698990.1_467961_468615_+,NA|30aa|down_5|NZ_LR698990.1_468789_468879_+	NA|38aa|up_9|NZ_LR698990.1_450941_451055_+	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed	NA|126aa|up_8|NZ_LR698990.1_451191_451569_+	PRK05179, rpsM, 30S ribosomal protein S13; Validated	NA|133aa|up_7|NZ_LR698990.1_451653_452052_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|333aa|up_6|NZ_LR698990.1_452132_453131_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|156aa|up_5|NZ_LR698990.1_453219_453687_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|307aa|up_4|NZ_LR698990.1_453793_454714_+	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|727aa|up_3|NZ_LR698990.1_454890_457071_+	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|267aa|up_2|NZ_LR698990.1_457175_457976_+	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|268aa|up_1|NZ_LR698990.1_458283_459087_-	NA	NA|351aa|up_0|NZ_LR698990.1_459245_460298_+	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|168aa|down_0|NZ_LR698990.1_463415_463919_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|357aa|down_1|NZ_LR698990.1_463902_464973_+	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|410aa|down_2|NZ_LR698990.1_465042_466272_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|473aa|down_3|NZ_LR698990.1_466402_467821_-	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|218aa|down_4|NZ_LR698990.1_467961_468615_+	NA	NA|30aa|down_5|NZ_LR698990.1_468789_468879_+	NA	NA|233aa|down_6|NZ_LR698990.1_469013_469712_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|446aa|down_7|NZ_LR698990.1_469932_471270_-	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|463aa|down_8|NZ_LR698990.1_471374_472763_-	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing	NA|272aa|down_9|NZ_LR698990.1_472764_473580_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
GCF_902386735.1_UHGG_MGYG-HGUT-02395	NZ_LR698990	Bifidobacterium adolescentis isolate MGYG-HGUT-02395 chromosome 1	4	1547572-1547740	4	CRISPRCasFinder	no	DEDDh	cas3,WYL,csa3,DEDDh	Unclear	ATTTCAATCCACGCATCCCGTATGGGATGCGACA	34	0	0	NA	NA	NA	2	2	Orphan	cas3,WYL,csa3,DEDDh	NA|110aa|up_0|NZ_LR698990.1_1546798_1547128_+,NA	NA|209aa|up_9|NZ_LR698990.1_1537326_1537953_+	cd12922, VKOR_5, Vitamin K epoxide reductase family in bacteria	NA|300aa|up_8|NZ_LR698990.1_1538041_1538941_-	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|259aa|up_7|NZ_LR698990.1_1539037_1539814_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|283aa|up_6|NZ_LR698990.1_1539888_1540737_+	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|409aa|up_5|NZ_LR698990.1_1540876_1542103_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|182aa|up_4|NZ_LR698990.1_1542303_1542849_+	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|558aa|up_3|NZ_LR698990.1_1543007_1544681_+	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|315aa|up_2|NZ_LR698990.1_1544816_1545761_-	pfam01112, Asparaginase_2, Asparaginase	NA|113aa|up_1|NZ_LR698990.1_1546259_1546598_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|110aa|up_0|NZ_LR698990.1_1546798_1547128_+	NA	NA|296aa|down_0|NZ_LR698990.1_1547948_1548836_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	DEDDh|178aa|down_1|NZ_LR698990.1_1549255_1549789_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|220aa|down_2|NZ_LR698990.1_1550262_1550922_-	cd09132, PLDc_unchar4, Putative catalytic domain of uncharacterized phospholipase D-like proteins	NA|590aa|down_3|NZ_LR698990.1_1550903_1552673_-	pfam09369, DUF1998, Domain of unknown function (DUF1998)	NA|1112aa|down_4|NZ_LR698990.1_1552674_1556010_-	smart00490, HELICc, helicase superfamily c-terminal domain	NA|886aa|down_5|NZ_LR698990.1_1556009_1558667_-	pfam04851, ResIII, Type III restriction enzyme, res subunit	NA|539aa|down_6|NZ_LR698990.1_1558667_1560284_-	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|879aa|down_7|NZ_LR698990.1_1560295_1562932_-	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|430aa|down_8|NZ_LR698990.1_1562918_1564208_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|90aa|down_9|NZ_LR698990.1_1564289_1564559_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain
GCF_902386735.1_UHGG_MGYG-HGUT-02395	NZ_LR698990	Bifidobacterium adolescentis isolate MGYG-HGUT-02395 chromosome 1	5	1590487-1590582	5	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh	Orphan	CGCAATCCGTGAGCAAAAGGGTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh	NA,NA	NA|607aa|up_9|NZ_LR698990.1_1575831_1577652_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|up_8|NZ_LR698990.1_1577652_1578339_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|752aa|up_7|NZ_LR698990.1_1578557_1580813_-	PRK15098, PRK15098, beta-glucosidase BglX	NA|193aa|up_6|NZ_LR698990.1_1581045_1581624_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|400aa|up_5|NZ_LR698990.1_1581626_1582826_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|494aa|up_4|NZ_LR698990.1_1583095_1584577_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|193aa|up_3|NZ_LR698990.1_1584620_1585199_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|214aa|up_2|NZ_LR698990.1_1585382_1586024_-	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|470aa|up_1|NZ_LR698990.1_1586034_1587444_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|777aa|up_0|NZ_LR698990.1_1587932_1590263_+	PRK15098, PRK15098, beta-glucosidase BglX	NA|212aa|down_0|NZ_LR698990.1_1590728_1591364_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|413aa|down_1|NZ_LR698990.1_1591374_1592613_-	COG2730, BglC, Endoglucanase [Carbohydrate transport and metabolism]	NA|549aa|down_2|NZ_LR698990.1_1592842_1594489_-	cd09000, GH43_SXA-like, Glycosyl hydrolase family 43, such as Selenomonas ruminantium beta-D-xylosidase SXA	NA|403aa|down_3|NZ_LR698990.1_1594551_1595760_-	COG2730, BglC, Endoglucanase [Carbohydrate transport and metabolism]	NA|449aa|down_4|NZ_LR698990.1_1596039_1597386_-	pfam02055, Glyco_hydro_30, Glycosyl hydrolase family 30 TIM-barrel domain	NA|442aa|down_5|NZ_LR698990.1_1597521_1598847_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|209aa|down_6|NZ_LR698990.1_1599226_1599853_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|709aa|down_7|NZ_LR698990.1_1599888_1602015_-	pfam02449, Glyco_hydro_42, Beta-galactosidase	NA|210aa|down_8|NZ_LR698990.1_1602159_1602789_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|424aa|down_9|NZ_LR698990.1_1602825_1604097_-	TIGR01436, Glutamate--cysteine_ligase_chloroplastic, glutamate--cysteine ligase, plant type
