The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LR699553	Paraburkholderia sp. Msb3 isolate PDMSB31 chromosome I	4479997	598511	607767	4479997		Hokovirus(16.67%)	7	NA	NA
WP_007179200.1|598511_600473_+	molecular chaperone DnaK	NA	A0A1V0SH73	Hokovirus	49.3	7.8e-148
WP_007179199.1|600744_601887_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	40.2	3.6e-28
WP_165184443.1|601912_603835_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	34.4	5.6e-50
WP_007179197.1|604052_604868_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	28.8	9.1e-34
WP_007179196.1|604906_605587_-	deoxynucleoside kinase	NA	A0A249XZR7	Enterococcus_phage	29.1	5.7e-05
WP_007179195.1|605583_606132_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_165184446.1|606180_607767_-	polynucleotide adenylyltransferase PcnB	NA	A0A172Q0J1	Acinetobacter_phage	30.1	4.4e-16
>prophage 2
NZ_LR699553	Paraburkholderia sp. Msb3 isolate PDMSB31 chromosome I	4479997	2763905	2796973	4479997	capsid,terminase	Burkholderia_phage(57.14%)	41	NA	NA
WP_165186338.1|2763905_2765741_-	hypothetical protein	NA	A0A2H4J9C6	uncultured_Caudovirales_phage	28.8	9.8e-36
WP_165186339.1|2765922_2766204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165186340.1|2766258_2766795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165186341.1|2766806_2767724_-	hypothetical protein	NA	A9YX14	Burkholderia_phage	36.1	1.1e-16
WP_165186343.1|2767782_2768445_-	DUF2612 domain-containing protein	NA	A9YX13	Burkholderia_phage	66.2	1.0e-83
WP_165186345.1|2768451_2769627_-	hypothetical protein	NA	A9YX12	Burkholderia_phage	61.9	4.4e-130
WP_165186347.1|2769623_2769977_-	hypothetical protein	NA	A9YX11	Burkholderia_phage	55.6	2.5e-28
WP_165186349.1|2769986_2770742_-	hypothetical protein	NA	A9YX06	Burkholderia_phage	61.4	1.1e-78
WP_165186352.1|2770728_2771658_-	hypothetical protein	NA	A9YX04	Burkholderia_phage	51.1	4.6e-66
WP_165186354.1|2771723_2772038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165186356.1|2772034_2772589_-	hypothetical protein	NA	A0A2H4J1B3	uncultured_Caudovirales_phage	46.4	3.0e-36
WP_165186358.1|2772585_2774679_-	glycoside hydrolase family 104 protein	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	33.7	5.1e-89
WP_165186361.1|2774668_2774848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165186363.1|2774844_2775384_-	hypothetical protein	NA	A0A0N7IRF3	Acinetobacter_phage	29.8	4.2e-11
WP_165186365.1|2775380_2775830_-	DUF3277 family protein	NA	A0A0P0IKY2	Acinetobacter_phage	61.6	5.0e-42
WP_165186367.1|2775845_2777669_-	DUF3383 domain-containing protein	NA	A0A0P0I492	Acinetobacter_phage	42.4	2.7e-110
WP_165186369.1|2777740_2778322_-	hypothetical protein	NA	A9YX29	Burkholderia_phage	55.7	1.1e-54
WP_165186371.1|2778314_2778698_-	hypothetical protein	NA	A9YX28	Burkholderia_phage	60.2	1.6e-33
WP_165186373.1|2778697_2779231_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	53.1	1.0e-38
WP_165186375.1|2779235_2779619_-	DUF4054 domain-containing protein	NA	A9YX25	Burkholderia_phage	64.2	4.4e-39
WP_165186378.1|2779652_2780132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165186380.1|2780133_2781222_-	DUF2184 domain-containing protein	NA	A9YX23	Burkholderia_phage	75.7	4.8e-131
WP_165186382.1|2781291_2781798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165186384.1|2781807_2783283_-	DUF2213 domain-containing protein	NA	A9YX03	Burkholderia_phage	62.5	5.2e-128
WP_165186386.1|2783309_2784053_-|capsid	minor capsid protein	capsid	A9YWZ8	Burkholderia_phage	58.0	2.0e-72
WP_165186388.1|2784043_2785534_-	DUF1073 domain-containing protein	NA	A9YWZ7	Burkholderia_phage	68.5	7.1e-194
WP_165186390.1|2785556_2787104_-|terminase	phage terminase large subunit	terminase	B5AX37	Iodobacteriophage	46.7	7.8e-111
WP_165187470.1|2787460_2788741_-	site-specific DNA-methyltransferase	NA	K4HZA5	Acidithiobacillus_phage	45.3	5.5e-94
WP_165186392.1|2788873_2789131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165186394.1|2789307_2789829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165186396.1|2790092_2790689_-	DNA-binding protein	NA	A9YWZ1	Burkholderia_phage	71.5	4.5e-75
WP_165186398.1|2790705_2791182_-	RusA family crossover junction endodeoxyribonuclease	NA	A9YWY9	Burkholderia_phage	68.2	5.8e-57
WP_165186400.1|2791233_2791431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165186402.1|2791465_2792125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165186404.1|2792434_2792650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165186406.1|2792646_2793774_-	YdaU family protein	NA	A9YWY6	Burkholderia_phage	57.6	3.1e-48
WP_165186408.1|2793770_2794769_-	phosphoadenosine phosphosulfate reductase family protein	NA	Q8W6P3	Burkholderia_virus	76.5	2.9e-151
WP_165186411.1|2794765_2795524_-	hypothetical protein	NA	A0A1R3Y5Q7	Salmonella_virus	51.1	1.9e-62
WP_165186413.1|2795600_2795900_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_165186416.1|2796093_2796360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165186418.1|2796472_2796973_+	hypothetical protein	NA	A0A127KNL4	Pseudomonas_phage	39.6	2.0e-23
>prophage 3
NZ_LR699553	Paraburkholderia sp. Msb3 isolate PDMSB31 chromosome I	4479997	2801009	2806475	4479997		Pseudomonas_phage(83.33%)	7	NA	NA
WP_165186436.1|2801009_2801216_+	hypothetical protein	NA	W6MVG2	Pseudomonas_phage	59.4	5.3e-15
WP_165186438.1|2801479_2801653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165186440.1|2801680_2801971_+	KTSC domain-containing protein	NA	A9YWW2	Burkholderia_phage	74.4	2.2e-27
WP_165186442.1|2801967_2802768_+	PD-(D/E)XK nuclease family protein	NA	J7HXJ4	Pseudomonas_phage	55.4	5.0e-85
WP_165186444.1|2802778_2803993_+	hypothetical protein	NA	J7HXB6	Pseudomonas_phage	60.2	7.3e-80
WP_165186447.1|2804019_2804721_+	cell division protein FtsK	NA	J7I0T4	Pseudomonas_phage	44.6	2.1e-23
WP_165186449.1|2804717_2806475_+	AAA family ATPase	NA	H2BD46	Pseudomonas_phage	33.8	3.3e-73
>prophage 4
NZ_LR699553	Paraburkholderia sp. Msb3 isolate PDMSB31 chromosome I	4479997	3641866	3651406	4479997	protease	Agrobacterium_phage(16.67%)	8	NA	NA
WP_007180615.1|3641866_3644164_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.5	1.6e-168
WP_006050100.1|3644160_3644475_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A218MMY6	uncultured_virus	44.6	5.8e-13
WP_007180614.1|3645025_3645232_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	81.8	2.4e-23
WP_007180613.1|3645506_3646763_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	2.3e-12
WP_007180612.1|3647095_3647665_+	pseudouridine synthase	NA	NA	NA	NA	NA
WP_011489640.1|3648121_3648316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007180611.1|3648461_3648968_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	39.2	9.4e-13
WP_007180610.1|3649300_3651406_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	26.8	4.5e-61
>prophage 1
NZ_LR699554	Paraburkholderia sp. Msb3 isolate PDMSB31 chromosome II	3505044	1708669	1714815	3505044		Lake_Baikal_phage(33.33%)	7	NA	NA
WP_165188385.1|1708669_1709923_+	IscS subfamily cysteine desulfurase	NA	H7BUW1	unidentified_phage	38.0	7.4e-35
WP_007177253.1|1709985_1710432_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	75.0	1.1e-49
WP_007177254.1|1710459_1710834_+	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	50.9	1.3e-22
WP_007177255.1|1710841_1711165_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.0	6.3e-23
WP_007177256.1|1711188_1713063_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.4	1.1e-95
WP_007177257.1|1713120_1713453_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_007177258.1|1713678_1714815_+	homocitrate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	35.6	8.6e-06
>prophage 1
NZ_LR699555	Paraburkholderia sp. Msb3 isolate PDMSB31 plasmid pI	204567	134154	191463	204567	protease,transposase,tail,integrase	uncultured_Mediterranean_phage(21.43%)	44	151945:151961	195617:195633
WP_165187363.1|134154_135255_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_165190002.1|135924_136377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165190004.1|136373_136583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165190006.1|136610_136886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165190008.1|138667_139789_-	replication initiator protein A	NA	A0A0K1Y6J9	Rhodobacter_phage	34.8	4.4e-39
WP_165190010.1|139811_140225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165190012.1|140296_141655_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_165190014.1|141665_142451_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	24.3	8.5e-13
WP_165190016.1|142467_142869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165190018.1|143453_143636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165190020.1|143723_143966_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_165190022.1|144002_145271_-	replication protein O	NA	NA	NA	NA	NA
WP_165190156.1|145538_146396_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA	NA
WP_165190024.1|146519_147704_-	AAA family ATPase	NA	A0A0A8WFQ8	Clostridium_phage	31.5	7.3e-08
WP_165190026.1|147943_149863_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_165190028.1|149859_150627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165190030.1|151055_151862_+	hypothetical protein	NA	NA	NA	NA	NA
151945:151961	attL	GCGAGGCCGCGACCCAA	NA	NA	NA	NA
WP_165190032.1|152620_153016_+	hypothetical protein	NA	A0A2H4J643	uncultured_Caudovirales_phage	51.1	5.6e-13
WP_165190042.1|153052_158215_+	DEAD/DEAH box helicase	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	22.5	1.4e-47
WP_165190044.1|158211_161067_+	DEAD/DEAH box helicase	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	26.7	4.0e-36
WP_165190046.1|161063_165380_+	restriction endonuclease	NA	A0A1B1IUC6	uncultured_Mediterranean_phage	26.9	7.5e-18
WP_165190048.1|165363_167334_+	DUF2326 domain-containing protein	NA	NA	NA	NA	NA
WP_165190050.1|167788_169417_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_165190052.1|169425_170295_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_165190054.1|170272_170800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165190056.1|170839_171880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165190058.1|172239_173259_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_165190060.1|173427_174273_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_165190062.1|174426_174888_-	phage virion morphogenesis protein	NA	E5FFH6	Burkholderia_phage	77.5	3.7e-56
WP_165190064.1|174809_175322_-|tail	phage tail protein	tail	E5FFH7	Burkholderia_phage	83.3	9.0e-64
WP_165190158.1|175438_175882_-	hypothetical protein	NA	E5FFH9	Burkholderia_phage	76.0	2.9e-42
WP_165190066.1|176210_176633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165190077.1|176825_178307_-	diguanylate cyclase	NA	G3MA91	Bacillus_virus	33.1	1.2e-12
WP_165190162.1|179053_179410_-	host attachment protein	NA	NA	NA	NA	NA
WP_165190160.1|179498_180656_-	alkene reductase	NA	NA	NA	NA	NA
WP_165190079.1|181215_182043_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_165190081.1|182185_183451_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	51.4	6.4e-103
WP_165190083.1|183879_184008_+	maleylacetate reductase	NA	NA	NA	NA	NA
WP_165190085.1|185118_185613_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	35.9	1.8e-13
WP_154566746.1|185703_186138_-	PRC-barrel domain containing protein	NA	NA	NA	NA	NA
WP_165190087.1|186434_187010_+	HdeD family acid-resistance protein	NA	NA	NA	NA	NA
WP_165190089.1|187160_187793_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
WP_165190091.1|188116_188608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165190093.1|188628_191463_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	33.9	9.0e-121
195617:195633	attR	GCGAGGCCGCGACCCAA	NA	NA	NA	NA
>prophage 1
NZ_LR699556	Paraburkholderia sp. Msb3 isolate PDMSB31 plasmid pII	93611	0	80495	93611	integrase,transposase	Leptospira_phage(16.67%)	56	18921:18938	60108:60125
WP_165187048.1|0_1629_+|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	34.2	3.5e-61
WP_165190169.1|3726_4320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165190171.1|4807_5590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165190301.1|5682_6312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165190173.1|6421_6769_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_007176182.1|7056_7893_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	57.2	1.5e-76
WP_039339357.1|7889_8936_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	45.3	1.6e-75
WP_165190175.1|9528_9849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165190177.1|10113_11544_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	30.4	4.5e-52
WP_165190179.1|11691_12375_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_165190181.1|12390_13728_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_165190183.1|13771_14686_-	UDP-3-O-acyl N-acetylglycosamine deacetylase	NA	NA	NA	NA	NA
WP_165190185.1|14685_22344_-	SDR family NAD(P)-dependent oxidoreductase	NA	D0R7J2	Paenibacillus_phage	31.9	1.7e-28
18921:18938	attL	CGTCGCCGCGCAGATAGT	NA	NA	NA	NA
WP_165190187.1|22340_23876_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_165190189.1|23876_24671_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_165190191.1|24663_25869_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_165190193.1|26253_27696_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA	NA
WP_165190195.1|27802_28450_-	ABC transporter ATP-binding protein	NA	Q66093	Chlorella_virus	26.3	4.9e-06
WP_165190197.1|28446_29250_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_165190199.1|29252_30407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165190201.1|30603_35886_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_165190203.1|35962_36943_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_165190205.1|36998_38306_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_165190207.1|38355_39552_-	polysaccharide export protein	NA	NA	NA	NA	NA
WP_165190303.1|39670_40822_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_165190209.1|40818_42681_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_165190165.1|43430_45098_+	hypothetical protein	NA	Q6UKA1	Burkholderia_virus	36.6	1.9e-70
WP_165190305.1|45615_46329_-	replication initiation protein	NA	NA	NA	NA	NA
WP_165190211.1|46911_47268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165190213.1|48782_49118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165190215.1|49104_49926_+	AAA family ATPase	NA	Q8JL10	Natrialba_phage	34.6	3.0e-16
WP_165190217.1|49918_50800_+	ParB/RepB/Spo0J family partition protein	NA	S5VSZ7	Leptospira_phage	35.7	1.0e-14
WP_165190219.1|51228_51384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165190221.1|51901_52174_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_165190223.1|52170_52470_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_165190243.1|52595_54491_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_165190245.1|54722_54920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165190307.1|55304_55538_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_165190247.1|56416_57367_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K2CP59	Brevibacillus_phage	29.8	2.1e-18
WP_165190309.1|57341_57611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165190167.1|58201_58444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165190249.1|58412_59627_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A167RG65	Powai_lake_megavirus	29.7	2.3e-25
WP_165190251.1|59866_62038_+	cellulose synthase	NA	NA	NA	NA	NA
60108:60125	attR	ACTATCTGCGCGGCGACG	NA	NA	NA	NA
WP_165190253.1|62049_64176_+	glycosyl transferase family protein	NA	NA	NA	NA	NA
WP_165190311.1|64211_64997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165190255.1|64993_67846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165190257.1|67858_68542_+	cell division protein FtsQ	NA	NA	NA	NA	NA
WP_165190259.1|68553_69939_+	MBOAT family protein	NA	A0A125RNP0	Pseudomonas_phage	34.4	8.1e-59
WP_165190261.1|69833_71006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165190263.1|71002_72016_+	twin-arginine translocation pathway signal	NA	NA	NA	NA	NA
WP_165190265.1|73292_74579_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_165190267.1|74813_76595_+	flagellin	NA	NA	NA	NA	NA
WP_165190269.1|76741_78562_+	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_165190271.1|78583_78883_+	flagellar protein FliT	NA	NA	NA	NA	NA
WP_165190273.1|78969_79158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165190275.1|79469_80495_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
