assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_902459535.1_Paraburkholderia_sp_Msb3	NZ_LR699553	Paraburkholderia sp. Msb3 isolate PDMSB31 chromosome I	1	900739-900833	1	CRISPRCasFinder	no		cas3,WYL,DinG,DEDDh,csa3	Orphan	CATGCGCAGGAGCCGGCGTTCGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DinG,DEDDh,csa3,RT	NA,NA	NA|439aa|up_9|NZ_LR699553.1_887133_888450_+	COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]	NA|253aa|up_8|NZ_LR699553.1_888508_889267_+	PRK06136, PRK06136, uroporphyrinogen-III C-methyltransferase	NA|1067aa|up_7|NZ_LR699553.1_889273_892474_-	pfam01375, Enterotoxin_a, Heat-labile enterotoxin alpha chain	NA|131aa|up_6|NZ_LR699553.1_893799_894192_+	pfam05954, Phage_GPD, Phage late control gene D protein (GPD)	NA|330aa|up_5|NZ_LR699553.1_894513_895503_+	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|124aa|up_4|NZ_LR699553.1_895674_896046_-	cd03416, CbiX_SirB_N, Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain	NA|383aa|up_3|NZ_LR699553.1_896057_897206_-	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG	NA|366aa|up_2|NZ_LR699553.1_897209_898307_-	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF	NA|504aa|up_1|NZ_LR699553.1_898444_899956_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|139aa|up_0|NZ_LR699553.1_900014_900431_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|113aa|down_0|NZ_LR699553.1_901499_901838_-	COG4654, COG4654, Cytochrome c551/c552 [Energy production and conversion]	NA|558aa|down_1|NZ_LR699553.1_902006_903680_-	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|329aa|down_2|NZ_LR699553.1_903853_904840_+	cd08453, PBP2_IlvR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, IlvR, involved in the biosynthesis of isoleucine, leucine and valine; contains type 2 periplasmic binding fold	NA|302aa|down_3|NZ_LR699553.1_904968_905874_+	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed	NA|245aa|down_4|NZ_LR699553.1_905981_906716_-	COG3471, COG3471, Predicted periplasmic/secreted protein [Function unknown]	NA|153aa|down_5|NZ_LR699553.1_906891_907350_-	COG2947, COG2947, Uncharacterized conserved protein [Function unknown]	NA|105aa|down_6|NZ_LR699553.1_907783_908098_-	pfam05164, ZapA, Cell division protein ZapA	NA|121aa|down_7|NZ_LR699553.1_908094_908457_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|625aa|down_8|NZ_LR699553.1_909013_910888_+	COG4206, BtuB, Outer membrane cobalamin receptor protein [Coenzyme metabolism]	NA|355aa|down_9|NZ_LR699553.1_910939_912004_+	pfam01032, FecCD, FecCD transport family
GCF_902459535.1_Paraburkholderia_sp_Msb3	NZ_LR699553	Paraburkholderia sp. Msb3 isolate PDMSB31 chromosome I	2	936589-936704	2	CRISPRCasFinder	no		cas3,WYL,DinG,DEDDh,csa3	Orphan	AACGCCGGGCCGCCCCAAGTTTTCTCACCCCCCTCGGGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DinG,DEDDh,csa3,RT	NA,NA	NA|213aa|up_9|NZ_LR699553.1_921913_922552_+	cd02042, ParAB_family, partition proteins ParAB family	NA|129aa|up_8|NZ_LR699553.1_922694_923081_-	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional	NA|278aa|up_7|NZ_LR699553.1_923131_923965_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|292aa|up_6|NZ_LR699553.1_924152_925028_-	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication,    recombination, and repair]	NA|62aa|up_5|NZ_LR699553.1_925032_925218_-	pfam11943, DUF3460, Protein of unknown function (DUF3460)	NA|612aa|up_4|NZ_LR699553.1_925630_927466_+	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|1444aa|up_3|NZ_LR699553.1_927494_931826_+	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|712aa|up_2|NZ_LR699553.1_931983_934119_-	PRK00133, metG, methionyl-tRNA synthetase; Reviewed	NA|218aa|up_1|NZ_LR699553.1_934493_935147_-	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]	NA|363aa|up_0|NZ_LR699553.1_935496_936585_+	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC	NA|178aa|down_0|NZ_LR699553.1_936856_937390_+	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|190aa|down_1|NZ_LR699553.1_937736_938306_+	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|762aa|down_2|NZ_LR699553.1_938393_940679_+	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|244aa|down_3|NZ_LR699553.1_940681_941413_+	pfam07007, LprI, Lysozyme inhibitor LprI	NA|309aa|down_4|NZ_LR699553.1_941449_942376_-	COG3781, COG3781, Predicted membrane protein [Function unknown]	NA|281aa|down_5|NZ_LR699553.1_942446_943289_-	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein	NA|303aa|down_6|NZ_LR699553.1_943429_944338_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|276aa|down_7|NZ_LR699553.1_944407_945235_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|418aa|down_8|NZ_LR699553.1_945273_946527_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|349aa|down_9|NZ_LR699553.1_946564_947611_-	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold
GCF_902459535.1_Paraburkholderia_sp_Msb3	NZ_LR699553	Paraburkholderia sp. Msb3 isolate PDMSB31 chromosome I	3	2060767-2060897	3	CRISPRCasFinder	no		cas3,WYL,DinG,DEDDh,csa3	Orphan	ACGGCAAAGCCGAAGGCGAAGAT	23	0	0	NA	NA	NA	2	2	Orphan	cas3,WYL,DinG,DEDDh,csa3,RT	NA|80aa|up_8|NZ_LR699553.1_2054344_2054584_-,NA|86aa|up_7|NZ_LR699553.1_2054600_2054858_-,NA|186aa|up_5|NZ_LR699553.1_2055899_2056457_+,NA|137aa|up_4|NZ_LR699553.1_2056522_2056933_-,NA|84aa|up_3|NZ_LR699553.1_2056929_2057181_-,NA|117aa|down_2|NZ_LR699553.1_2063068_2063419_+,NA|194aa|down_3|NZ_LR699553.1_2063438_2064020_+,NA|154aa|down_5|NZ_LR699553.1_2064929_2065391_+,NA|65aa|down_7|NZ_LR699553.1_2066238_2066433_-,NA|127aa|down_8|NZ_LR699553.1_2066436_2066817_-	NA|144aa|up_9|NZ_LR699553.1_2053916_2054348_-	cd06554, ASCH_ASC-1_like, ASC-1 homology domain, ASC-1-like subfamily	NA|80aa|up_8|NZ_LR699553.1_2054344_2054584_-	NA	NA|86aa|up_7|NZ_LR699553.1_2054600_2054858_-	NA	NA|336aa|up_6|NZ_LR699553.1_2054859_2055867_-	pfam07505, DUF5131, Protein of unknown function (DUF5131)	NA|186aa|up_5|NZ_LR699553.1_2055899_2056457_+	NA	NA|137aa|up_4|NZ_LR699553.1_2056522_2056933_-	NA	NA|84aa|up_3|NZ_LR699553.1_2056929_2057181_-	NA	NA|90aa|up_2|NZ_LR699553.1_2057820_2058090_+	pfam02831, gpW, gpW	NA|552aa|up_1|NZ_LR699553.1_2058089_2059745_+	pfam05136, Phage_portal_2, Phage portal protein, lambda family	NA|294aa|up_0|NZ_LR699553.1_2059741_2060623_+	cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad	NA|219aa|down_0|NZ_LR699553.1_2061294_2061951_+	pfam02924, HDPD, Bacteriophage lambda head decoration protein D	NA|346aa|down_1|NZ_LR699553.1_2062027_2063065_+	pfam03864, Phage_cap_E, Phage major capsid protein E	NA|117aa|down_2|NZ_LR699553.1_2063068_2063419_+	NA	NA|194aa|down_3|NZ_LR699553.1_2063438_2064020_+	NA	NA|65aa|down_4|NZ_LR699553.1_2064029_2064224_+	pfam10948, DUF2635, Protein of unknown function (DUF2635)	NA|154aa|down_5|NZ_LR699553.1_2064929_2065391_+	NA	NA|276aa|down_6|NZ_LR699553.1_2065387_2066215_+	cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2	NA|65aa|down_7|NZ_LR699553.1_2066238_2066433_-	NA	NA|127aa|down_8|NZ_LR699553.1_2066436_2066817_-	NA	NA|226aa|down_9|NZ_LR699553.1_2066840_2067518_+	pfam02586, SRAP, SOS response associated peptidase (SRAP)
GCF_902459535.1_Paraburkholderia_sp_Msb3	NZ_LR699554	Paraburkholderia sp. Msb3 isolate PDMSB31 chromosome II	1	28367-28454	1	CRISPRCasFinder	no		csa3,WYL,DinG,cas3,RT	Orphan	AAAGGTGAGCGTTTTCGGGAGCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DinG,DEDDh,csa3,RT	NA|173aa|up_9|NZ_LR699554.1_17921_18440_+,NA|136aa|up_7|NZ_LR699554.1_19517_19925_+,NA|181aa|up_2|NZ_LR699554.1_25877_26420_+,NA	NA|173aa|up_9|NZ_LR699554.1_17921_18440_+	NA	NA|173aa|up_8|NZ_LR699554.1_18973_19492_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|136aa|up_7|NZ_LR699554.1_19517_19925_+	NA	NA|232aa|up_6|NZ_LR699554.1_19921_20617_+	cd07064, AlkD_like_1, A new structural DNA glycosylase containing HEAT-like repeats	NA|592aa|up_5|NZ_LR699554.1_20659_22435_-	cd09173, PLDc_Nuc_like_unchar1_2, Putative catalytic domain, repeat 2, of uncharacterized hypothetical proteins similar to Nuc, an endonuclease from Salmonella typhimurium	NA|797aa|up_4|NZ_LR699554.1_22710_25101_+	cd16916, HATPase_CheA-like, Histidine kinase-like ATPase domain of the chemotaxis protein histidine kinase CheA, and some hybrid sensor histidine kinases	NA|245aa|up_3|NZ_LR699554.1_25146_25881_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|181aa|up_2|NZ_LR699554.1_25877_26420_+	NA	NA|324aa|up_1|NZ_LR699554.1_26457_27429_+	pfam13690, CheX, Chemotaxis phosphatase CheX	NA|122aa|up_0|NZ_LR699554.1_27449_27815_+	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|249aa|down_0|NZ_LR699554.1_28673_29420_+	PRK09468, ompR, osmolarity response regulator; Provisional	NA|253aa|down_1|NZ_LR699554.1_29498_30257_-	PRK07023, PRK07023, SDR family oxidoreductase	NA|320aa|down_2|NZ_LR699554.1_30368_31328_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|213aa|down_3|NZ_LR699554.1_31567_32206_+	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family	NA|242aa|down_4|NZ_LR699554.1_32564_33290_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|407aa|down_5|NZ_LR699554.1_33451_34672_+	PLN02409, PLN02409, serine--glyoxylate aminotransaminase	NA|306aa|down_6|NZ_LR699554.1_34732_35650_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|300aa|down_7|NZ_LR699554.1_35807_36707_+	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional	NA|306aa|down_8|NZ_LR699554.1_36735_37653_-	PRK11233, PRK11233, nitrogen assimilation transcriptional regulator; Provisional	NA|443aa|down_9|NZ_LR699554.1_37828_39157_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily
GCF_902459535.1_Paraburkholderia_sp_Msb3	NZ_LR699554	Paraburkholderia sp. Msb3 isolate PDMSB31 chromosome II	2	238855-238928	2	CRISPRCasFinder	no		csa3,WYL,DinG,cas3,RT	Orphan	CTGTCGACCAGAGTTGGCGCTTTA	24	1	2	238879-238904|238879-238904	NZ_LR699553.1_2432344-2432319|NZ_LR699553.1_3825957-3825982	NA	1	1	Orphan	cas3,WYL,DinG,DEDDh,csa3,RT	NA|132aa|up_9|NZ_LR699554.1_227985_228381_-,NA	NA|132aa|up_9|NZ_LR699554.1_227985_228381_-	NA	NA|509aa|up_8|NZ_LR699554.1_228580_230107_+	PRK08292, PRK08292, AMP nucleosidase; Provisional	NA|177aa|up_7|NZ_LR699554.1_230168_230699_-	pfam02417, Chromate_transp, Chromate transporter	NA|190aa|up_6|NZ_LR699554.1_230695_231265_-	pfam02417, Chromate_transp, Chromate transporter	NA|154aa|up_5|NZ_LR699554.1_231362_231824_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|248aa|up_4|NZ_LR699554.1_231880_232624_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|914aa|up_3|NZ_LR699554.1_232625_235367_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|450aa|up_2|NZ_LR699554.1_235535_236885_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|291aa|up_1|NZ_LR699554.1_236988_237861_+	pfam01738, DLH, Dienelactone hydrolase family	NA|290aa|up_0|NZ_LR699554.1_237976_238846_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|369aa|down_0|NZ_LR699554.1_239103_240210_-	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]	NA|103aa|down_1|NZ_LR699554.1_240495_240804_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|294aa|down_2|NZ_LR699554.1_240800_241682_+	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase	NA|636aa|down_3|NZ_LR699554.1_241767_243675_+	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|269aa|down_4|NZ_LR699554.1_243938_244745_+	PRK13674, PRK13674, GTP cyclohydrolase I FolE2	NA|343aa|down_5|NZ_LR699554.1_244827_245856_-	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|406aa|down_6|NZ_LR699554.1_245979_247197_+	pfam03486, HI0933_like, HI0933-like protein	NA|71aa|down_7|NZ_LR699554.1_247265_247478_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|149aa|down_8|NZ_LR699554.1_247739_248186_+	pfam09424, YqeY, Yqey-like protein	NA|623aa|down_9|NZ_LR699554.1_248266_250135_+	PRK05667, dnaG, DNA primase; Validated
