The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LR735429	Staphylococcus epidermidis strain none isolate Se_BPH0704 chromosome 1	2526011	1060398	1103391	2526011	tRNA	Staphylococcus_phage(92.86%)	33	NA	NA
WP_002446741.1|1060398_1061064_-	Ltp family lipoprotein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	28.2	5.5e-05
WP_070853465.1|1062298_1063723_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	64.1	5.4e-175
WP_032604475.1|1063712_1064714_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	49.2	1.3e-90
WP_002457867.1|1064710_1064959_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	83.1	6.5e-36
WP_002457866.1|1065029_1065497_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	58.1	3.2e-44
WP_083324161.1|1065483_1066272_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	70.4	2.3e-98
WP_070853466.1|1066498_1068091_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	83.8	4.2e-269
WP_002457863.1|1068460_1069660_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	86.4	1.3e-193
WP_002476258.1|1069762_1070671_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	80.6	1.8e-102
WP_002446731.1|1070851_1071688_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	72.2	2.5e-119
WP_002474962.1|1071936_1072290_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	33.3	1.3e-05
WP_002474960.1|1072286_1072652_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	58.7	3.7e-35
WP_002487559.1|1072688_1072997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002474978.1|1073272_1073986_+	transaldolase	NA	M4QQQ7	Cyanophage	38.2	1.1e-22
WP_002474963.1|1074125_1074569_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.5	1.3e-21
WP_002474984.1|1074555_1074999_-	competence protein ComK	NA	NA	NA	NA	NA
WP_002446724.1|1075004_1075484_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	43.3	2.9e-24
WP_002456441.1|1075690_1075906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830727.1|1076280_1077132_+	glucosaminidase domain-containing protein	NA	A0A1J0MFB0	Staphylococcus_phage	35.6	1.0e-32
WP_002474985.1|1077480_1078965_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	65.6	2.5e-13
WP_002495708.1|1079403_1080447_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	66.5	7.6e-134
WP_002495709.1|1080453_1081086_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	76.7	1.1e-87
WP_155966451.1|1081098_1082280_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	75.3	2.2e-177
WP_002446718.1|1082292_1082754_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	84.2	3.5e-59
WP_155966453.1|1082800_1083802_-	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	69.7	9.8e-131
WP_002446716.1|1084044_1084872_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_141751284.1|1085361_1085763_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_155966455.1|1086030_1086594_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	65.9	1.5e-67
WP_155966457.1|1086590_1087544_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.7	3.3e-67
WP_002474989.1|1087650_1088865_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	83.7	7.9e-183
WP_002490143.1|1089153_1091571_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.4	0.0e+00
WP_001830891.1|1091596_1091908_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	71.8	4.1e-35
WP_123213729.1|1092312_1103391_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	28.0	6.5e-42
>prophage 2
NZ_LR735429	Staphylococcus epidermidis strain none isolate Se_BPH0704 chromosome 1	2526011	1215563	1224715	2526011	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_002457787.1|1215563_1216568_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	2.9e-05
WP_002475163.1|1216569_1217595_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002475156.1|1217615_1218755_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	3.0e-83
WP_002446618.1|1218770_1219031_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.3	5.7e-06
WP_002457784.1|1219378_1221670_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	38.2	4.8e-32
WP_002457783.1|1221904_1224178_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.8	8.6e-66
WP_001832698.1|1224196_1224715_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	2.1e-28
>prophage 3
NZ_LR735429	Staphylococcus epidermidis strain none isolate Se_BPH0704 chromosome 1	2526011	1814491	1822961	2526011		Synechococcus_phage(33.33%)	9	NA	NA
WP_002475231.1|1814491_1815058_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.5	6.1e-29
WP_002446153.1|1815057_1816089_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.4	9.6e-65
WP_002486592.1|1816081_1817566_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	9.4e-45
WP_126122420.1|1817544_1819734_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.3	1.6e-138
WP_038812512.1|1819726_1820398_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_002446149.1|1820399_1820660_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002486585.1|1820659_1821364_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	H8ZMN3	Synechococcus_phage	42.5	2.8e-47
WP_002475241.1|1821364_1822492_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002457464.1|1822478_1822961_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	2.0e-20
>prophage 4
NZ_LR735429	Staphylococcus epidermidis strain none isolate Se_BPH0704 chromosome 1	2526011	2048876	2055124	2526011	transposase	Streptococcus_phage(33.33%)	6	NA	NA
WP_088922760.1|2048876_2050017_+|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	96.4	3.4e-71
WP_001829659.1|2050125_2050710_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	54.7	3.1e-52
WP_002445957.1|2051037_2051982_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	2.4e-54
WP_002445956.1|2052112_2053108_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	NA	A1IMD5	Streptococcus_phage	39.8	5.9e-51
WP_002445955.1|2053107_2054016_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	33.6	4.7e-07
WP_099774893.1|2054191_2055124_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	48.9	1.9e-83
>prophage 5
NZ_LR735429	Staphylococcus epidermidis strain none isolate Se_BPH0704 chromosome 1	2526011	2087288	2097724	2526011		uncultured_Caudovirales_phage(66.67%)	10	NA	NA
WP_001829596.1|2087288_2088068_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.6	5.1e-18
WP_002445926.1|2088064_2089024_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	92.0	3.8e-15
WP_002445925.1|2089007_2089982_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	98.8	2.3e-164
WP_002445924.1|2090045_2090267_-	hypothetical protein	NA	A0A2H4IYB4	uncultured_Caudovirales_phage	85.0	4.6e-09
WP_002445923.1|2090241_2091210_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	99.7	8.7e-185
WP_002457603.1|2091328_2093434_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	99.4	0.0e+00
WP_001829589.1|2093396_2093795_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	100.0	2.0e-71
WP_002473943.1|2094547_2095423_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002445919.1|2095436_2095937_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	1.1e-50
WP_070853657.1|2096218_2097724_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.6	3.4e-58
>prophage 6
NZ_LR735429	Staphylococcus epidermidis strain none isolate Se_BPH0704 chromosome 1	2526011	2237684	2251384	2526011	integrase,terminase	Staphylococcus_phage(64.29%)	22	2232427:2232443	2249662:2249678
2232427:2232443	attL	TATTATTCAACATCAAT	NA	NA	NA	NA
WP_155966560.1|2237684_2238257_-|terminase	terminase small subunit	terminase	A0A2H4JBF3	uncultured_Caudovirales_phage	92.1	5.0e-95
WP_155966562.1|2238621_2238831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155966564.1|2238830_2239418_-	pathogenicity island protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	69.9	3.8e-66
WP_155966566.1|2239430_2239964_-	hypothetical protein	NA	A0A2H4JD56	uncultured_Caudovirales_phage	29.0	3.0e-09
WP_155966568.1|2239978_2240323_-	pathogenicity island protein	NA	A0A1W6JQF3	Staphylococcus_phage	64.9	1.5e-33
WP_155966570.1|2240609_2241194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155966572.1|2241190_2241835_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	63.8	8.4e-75
WP_155966574.1|2241831_2242113_-	pathogenicity island protein	NA	Q4ZE68	Staphylococcus_phage	58.9	6.5e-24
WP_155966576.1|2242087_2242909_-	bifunctional DNA primase/polymerase	NA	Q4ZE69	Staphylococcus_phage	64.8	5.3e-98
WP_155966578.1|2243079_2244693_-	phage resistance protein	NA	A0A1W6JPF4	Staphylococcus_phage	69.5	2.6e-218
WP_155966580.1|2244779_2245085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155966582.1|2245085_2245310_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	57.4	7.8e-12
WP_166738498.1|2245311_2245467_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155966584.1|2245482_2245755_-	helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	83.3	6.5e-37
WP_155966586.1|2245755_2245920_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_155966588.1|2246068_2246677_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_155966590.1|2246774_2247335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_124263644.1|2247388_2247622_+	hypothetical protein	NA	Q4ZCB8	Staphylococcus_virus	72.7	8.9e-27
WP_155966592.1|2247644_2248307_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	47.3	1.3e-17
WP_173020011.1|2248351_2249566_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	48.8	4.6e-98
WP_002445784.1|2249886_2250279_-	hypothetical protein	NA	NA	NA	NA	NA
2249662:2249678	attR	TATTATTCAACATCAAT	NA	NA	NA	NA
WP_002445783.1|2250361_2251384_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	28.6	1.6e-35
