assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_902509495.1_Se_BPH0704	NZ_LR735429	Staphylococcus epidermidis strain none isolate Se_BPH0704 chromosome 1	1	69068-70157	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csa3	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	Type II-C,Type II-A,Type II-B	GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT,GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATATN,GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT	36,37,36	0	0	NA	NA	NA:NA:NA	15,16,15	16	TypeII-C,TypeII-B,TypeII-A	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	NA|23aa|up_9|NZ_LR735429.1_57550_57619_-,NA|330aa|up_0|NZ_LR735429.1_68047_69037_+,NA|67aa|down_0|NZ_LR735429.1_70852_71053_+,NA|210aa|down_1|NZ_LR735429.1_71215_71845_+	NA|23aa|up_9|NZ_LR735429.1_57550_57619_-	NA	NA|391aa|up_8|NZ_LR735429.1_58041_59214_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|131aa|up_7|NZ_LR735429.1_59270_59663_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|480aa|up_6|NZ_LR735429.1_59663_61103_+	pfam01636, APH, Phosphotransferase enzyme family	NA|391aa|up_5|NZ_LR735429.1_61232_62405_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|85aa|up_4|NZ_LR735429.1_62492_62747_+	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	cas9|1054aa|up_3|NZ_LR735429.1_63642_66804_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|302aa|up_2|NZ_LR735429.1_66811_67717_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|103aa|up_1|NZ_LR735429.1_67728_68037_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|330aa|up_0|NZ_LR735429.1_68047_69037_+	NA	NA|67aa|down_0|NZ_LR735429.1_70852_71053_+	NA	NA|210aa|down_1|NZ_LR735429.1_71215_71845_+	NA	NA|687aa|down_2|NZ_LR735429.1_72528_74589_+	cd07552, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to Archaeoglobus fulgidus CopB, a Cu(2+)-ATPase	NA|182aa|down_3|NZ_LR735429.1_74606_75152_+	pfam07563, DUF1541, Protein of unknown function (DUF1541)	NA|443aa|down_4|NZ_LR735429.1_75624_76953_-	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain	NA|357aa|down_5|NZ_LR735429.1_76971_78042_-	pfam13686, DrsE_2, DsrE/DsrF/DrsH-like family	NA|87aa|down_6|NZ_LR735429.1_78180_78441_+	cd10155, BsYrkD-like_DUF156, Uncharacterized protein YrkD from Bacillus subtilis and related domains; this domain superfamily was previously known as part of DUF156	NA|247aa|down_7|NZ_LR735429.1_78455_79196_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|132aa|down_8|NZ_LR735429.1_79256_79652_-	PRK13530, PRK13530, arsenate reductase (thioredoxin)	NA|430aa|down_9|NZ_LR735429.1_79668_80958_-	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB
GCF_902509495.1_Se_BPH0704	NZ_LR735429	Staphylococcus epidermidis strain none isolate Se_BPH0704 chromosome 1	2	987389-987531	2	CRISPRCasFinder	no		cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	Orphan	AGAACACATTCCTTCCCGGAATGAGATATAGGTGCAAATCCTATCTTCCGCTCCA	55	0	0	NA	NA	NA	1	1	Orphan	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	NA,NA|54aa|down_7|NZ_LR735429.1_995327_995489_+,NA|135aa|down_8|NZ_LR735429.1_995661_996066_+	NA|272aa|up_9|NZ_LR735429.1_968837_969653_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|325aa|up_8|NZ_LR735429.1_969849_970824_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|348aa|up_7|NZ_LR735429.1_971003_972047_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|181aa|up_6|NZ_LR735429.1_972153_972696_+	PRK13662, PRK13662, hypothetical protein; Provisional	NA|579aa|up_5|NZ_LR735429.1_972937_974674_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|365aa|up_4|NZ_LR735429.1_974824_975919_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|430aa|up_3|NZ_LR735429.1_976225_977515_-	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|153aa|up_2|NZ_LR735429.1_977595_978054_+	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|317aa|up_1|NZ_LR735429.1_978056_979007_+	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|151aa|up_0|NZ_LR735429.1_979102_979555_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|283aa|down_0|NZ_LR735429.1_988056_988905_+	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]	NA|353aa|down_1|NZ_LR735429.1_989131_990190_+	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|486aa|down_2|NZ_LR735429.1_990429_991887_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|241aa|down_3|NZ_LR735429.1_991879_992602_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|377aa|down_4|NZ_LR735429.1_992949_994080_+	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|157aa|down_5|NZ_LR735429.1_994076_994547_+	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|200aa|down_6|NZ_LR735429.1_994704_995304_+	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|54aa|down_7|NZ_LR735429.1_995327_995489_+	NA	NA|135aa|down_8|NZ_LR735429.1_995661_996066_+	NA	NA|462aa|down_9|NZ_LR735429.1_996249_997635_+	PRK00485, fumC, fumarate hydratase; Reviewed
GCF_902509495.1_Se_BPH0704	NZ_LR735429	Staphylococcus epidermidis strain none isolate Se_BPH0704 chromosome 1	3	1671175-1671260	3	CRISPRCasFinder	no	cas3	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	Unclear	CATGAGCCTCAGCTCATGTGTTC	23	0	0	NA	NA	NA	1	1	Unclear	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|117aa|up_9|NZ_LR735429.1_1660788_1661139_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|up_8|NZ_LR735429.1_1661244_1661982_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|up_7|NZ_LR735429.1_1661981_1662485_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|up_6|NZ_LR735429.1_1662611_1662887_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|456aa|up_5|NZ_LR735429.1_1663317_1664685_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|up_4|NZ_LR735429.1_1664715_1665048_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|409aa|up_3|NZ_LR735429.1_1665049_1666276_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1190aa|up_2|NZ_LR735429.1_1666272_1669842_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|246aa|up_1|NZ_LR735429.1_1669968_1670706_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|up_0|NZ_LR735429.1_1670820_1671054_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|245aa|down_0|NZ_LR735429.1_1671279_1672014_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|310aa|down_1|NZ_LR735429.1_1672006_1672936_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|326aa|down_2|NZ_LR735429.1_1672937_1673915_-	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|187aa|down_3|NZ_LR735429.1_1673916_1674477_-	PRK04424, PRK04424, transcription factor FapR	cas3|683aa|down_4|NZ_LR735429.1_1674637_1676686_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|553aa|down_5|NZ_LR735429.1_1676889_1678548_-	TIGR03599, YloV, DAK2 domain fusion protein YloV	NA|125aa|down_6|NZ_LR735429.1_1678562_1678937_-	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|down_7|NZ_LR735429.1_1679294_1679483_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|212aa|down_8|NZ_LR735429.1_1679566_1680202_-	TIGR01378, Thiamine_pyrophosphokinase, thiamine pyrophosphokinase	NA|215aa|down_9|NZ_LR735429.1_1680206_1680851_-	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)
GCF_902509495.1_Se_BPH0704	NZ_LR735429	Staphylococcus epidermidis strain none isolate Se_BPH0704 chromosome 1	4	2267543-2267631	4	CRISPRCasFinder	no		cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	Orphan	TCCACTCTATACTTTGATCTCTGAT	25	0	0	NA	NA	NA	1	1	Orphan	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|169aa|up_9|NZ_LR735429.1_2255849_2256356_-	pfam08741, YwhD, YwhD family	NA|433aa|up_8|NZ_LR735429.1_2256412_2257711_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|up_7|NZ_LR735429.1_2257802_2258279_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|225aa|up_6|NZ_LR735429.1_2258727_2259402_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|190aa|up_5|NZ_LR735429.1_2259612_2260182_-	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|315aa|up_4|NZ_LR735429.1_2260531_2261476_-	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|894aa|up_3|NZ_LR735429.1_2261499_2264181_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|313aa|up_2|NZ_LR735429.1_2264641_2265580_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|141aa|up_1|NZ_LR735429.1_2265736_2266159_+	pfam02082, Rrf2, Transcriptional regulator	NA|444aa|up_0|NZ_LR735429.1_2266163_2267495_+	PRK07251, PRK07251, FAD-containing oxidoreductase	NA|114aa|down_0|NZ_LR735429.1_2267883_2268225_-	pfam07293, DUF1450, Protein of unknown function (DUF1450)	NA|359aa|down_1|NZ_LR735429.1_2268435_2269512_-	TIGR01220, phosphomevalonate_kinase, phosphomevalonate kinase, ERG8-type, Gram-positive branch	NA|328aa|down_2|NZ_LR735429.1_2269524_2270508_-	TIGR01240, Diphosphomevalonate_decarboxylase, diphosphomevalonate decarboxylase	NA|307aa|down_3|NZ_LR735429.1_2270512_2271433_-	TIGR00549, Mevalonate_kinase, mevalonate kinase	NA|280aa|down_4|NZ_LR735429.1_2272125_2272965_-	cd16443, LplA, lipoate-protein ligase	NA|330aa|down_5|NZ_LR735429.1_2272964_2273954_-	PRK09653, eutD, phosphotransacetylase	NA|250aa|down_6|NZ_LR735429.1_2274124_2274874_+	PRK12276, PRK12276, putative heme peroxidase; Provisional	NA|255aa|down_7|NZ_LR735429.1_2275376_2276141_+	COG2966, COG2966, Uncharacterized conserved protein [Function unknown]	NA|151aa|down_8|NZ_LR735429.1_2276153_2276606_+	COG3610, COG3610, Uncharacterized conserved protein [Function unknown]	NA|497aa|down_9|NZ_LR735429.1_2276766_2278257_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]
