assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_902810435.1_SKV38	NZ_LR778174	Veillonella parvula strain SKV38 chromosome 1	1	65633-65737	1	CRISPRCasFinder	no		DinG,csa3,DEDDh,cas3,WYL,cas2,cas1,cas9	Orphan	GGTATCGCTATCGGTCATGGTGCGACA	27	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,DEDDh,cas3,WYL,cas2,cas1,cas9	NA|109aa|up_7|NZ_LR778174.1_38595_38922_+,NA|215aa|up_2|NZ_LR778174.1_56902_57547_+,NA|215aa|up_1|NZ_LR778174.1_63569_64214_+,NA|89aa|up_0|NZ_LR778174.1_64331_64598_-,NA|250aa|down_2|NZ_LR778174.1_91610_92360_+	NA|404aa|up_9|NZ_LR778174.1_36061_37273_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|359aa|up_8|NZ_LR778174.1_37452_38529_+	COG3274, COG3274, Predicted O-acyltransferase [General function prediction only]	NA|109aa|up_7|NZ_LR778174.1_38595_38922_+	NA	NA|790aa|up_6|NZ_LR778174.1_39353_41723_+	pfam03797, Autotransporter, Autotransporter beta-domain	NA|470aa|up_5|NZ_LR778174.1_42344_43754_-	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll	NA|348aa|up_4|NZ_LR778174.1_44145_45189_+	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|2811aa|up_3|NZ_LR778174.1_48396_56829_+	NF033477, EmaA_autotrans, collagen-binding adhesin autotransporter EmaA	NA|215aa|up_2|NZ_LR778174.1_56902_57547_+	NA	NA|215aa|up_1|NZ_LR778174.1_63569_64214_+	NA	NA|89aa|up_0|NZ_LR778174.1_64331_64598_-	NA	NA|3142aa|down_0|NZ_LR778174.1_71994_81420_+	NF033477, EmaA_autotrans, collagen-binding adhesin autotransporter EmaA	NA|3193aa|down_1|NZ_LR778174.1_81940_91519_+	NF033477, EmaA_autotrans, collagen-binding adhesin autotransporter EmaA	NA|250aa|down_2|NZ_LR778174.1_91610_92360_+	NA	NA|124aa|down_3|NZ_LR778174.1_98803_99175_+	pfam08821, CGGC, CGGC domain	NA|392aa|down_4|NZ_LR778174.1_99329_100505_+	cd07324, M48C_Oma1-like, Oma1 peptidase-like, integral membrane metallopeptidase	NA|204aa|down_5|NZ_LR778174.1_101140_101752_+	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]	NA|135aa|down_6|NZ_LR778174.1_101748_102153_+	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|251aa|down_7|NZ_LR778174.1_102157_102910_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|818aa|down_8|NZ_LR778174.1_103053_105507_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|341aa|down_9|NZ_LR778174.1_105506_106529_+	cd01148, TroA_a, Metal binding protein TroA_a
GCF_902810435.1_SKV38	NZ_LR778174	Veillonella parvula strain SKV38 chromosome 1	2	525924-526012	2	CRISPRCasFinder	no	DEDDh	DinG,csa3,DEDDh,cas3,WYL,cas2,cas1,cas9	Unclear	ATGATGCCTCAAGATAGTATGGG	23	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,DEDDh,cas3,WYL,cas2,cas1,cas9	NA|315aa|up_8|NZ_LR778174.1_515826_516771_+,NA|109aa|up_6|NZ_LR778174.1_518005_518332_+,NA	NA|313aa|up_9|NZ_LR778174.1_514879_515818_+	pfam09992, NAGPA, Phosphodiester glycosidase	NA|315aa|up_8|NZ_LR778174.1_515826_516771_+	NA	NA|392aa|up_7|NZ_LR778174.1_516843_518019_+	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_6|NZ_LR778174.1_518005_518332_+	NA	NA|451aa|up_5|NZ_LR778174.1_518876_520229_+	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated	NA|447aa|up_4|NZ_LR778174.1_520678_522019_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|230aa|up_3|NZ_LR778174.1_522015_522705_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|366aa|up_2|NZ_LR778174.1_523373_524471_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|110aa|up_1|NZ_LR778174.1_524830_525160_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|192aa|up_0|NZ_LR778174.1_525146_525722_+	pfam08006, DUF1700, Protein of unknown function (DUF1700)	NA|196aa|down_0|NZ_LR778174.1_526436_527024_-	TIGR01367, Orotate_phosphoribosyltransferase, orotate phosphoribosyltransferase, Thermus family	NA|240aa|down_1|NZ_LR778174.1_527020_527740_-	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	DEDDh|210aa|down_2|NZ_LR778174.1_527928_528558_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|221aa|down_3|NZ_LR778174.1_528572_529235_+	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|434aa|down_4|NZ_LR778174.1_529288_530590_+	COG0213, DeoA, Thymidine phosphorylase [Nucleotide transport and metabolism]	NA|142aa|down_5|NZ_LR778174.1_530600_531026_+	PRK05578, PRK05578, cytidine deaminase; Validated	NA|486aa|down_6|NZ_LR778174.1_531003_532461_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|212aa|down_7|NZ_LR778174.1_532465_533101_-	cd03385, PAP2_BcrC_like, PAP2_like proteins, BcrC_like subfamily	NA|495aa|down_8|NZ_LR778174.1_533260_534745_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|240aa|down_9|NZ_LR778174.1_534749_535469_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_902810435.1_SKV38	NZ_LR778174	Veillonella parvula strain SKV38 chromosome 1	3	584779-584886	3	CRISPRCasFinder	no		DinG,csa3,DEDDh,cas3,WYL,cas2,cas1,cas9	Orphan	AATAAAACGGCAATTGATAAAAAT	24	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,DEDDh,cas3,WYL,cas2,cas1,cas9	NA,NA|219aa|down_3|NZ_LR778174.1_595088_595745_+	NA|435aa|up_9|NZ_LR778174.1_572011_573316_+	pfam01964, ThiC_Rad_SAM, Radical SAM ThiC family	NA|66aa|up_8|NZ_LR778174.1_573339_573537_+	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS	NA|257aa|up_7|NZ_LR778174.1_573538_574309_+	PRK00208, thiG, thiazole synthase; Reviewed	NA|367aa|up_6|NZ_LR778174.1_574318_575419_+	PRK09240, thiH, 2-iminoacetate synthase ThiH	NA|213aa|up_5|NZ_LR778174.1_575431_576070_+	PRK08644, PRK08644, sulfur carrier protein ThiS adenylyltransferase ThiF	NA|216aa|up_4|NZ_LR778174.1_576070_576718_+	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI	NA|256aa|up_3|NZ_LR778174.1_576899_577667_+	cd10787, LamB_YcsF_like, LamB/YcsF family of  lactam utilization protein	NA|399aa|up_2|NZ_LR778174.1_577795_578992_+	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	NA|248aa|up_1|NZ_LR778174.1_579066_579810_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|341aa|up_0|NZ_LR778174.1_579796_580819_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|470aa|down_0|NZ_LR778174.1_590613_592023_+	cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM	NA|346aa|down_1|NZ_LR778174.1_592575_593613_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|374aa|down_2|NZ_LR778174.1_593839_594961_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|219aa|down_3|NZ_LR778174.1_595088_595745_+	NA	NA|506aa|down_4|NZ_LR778174.1_595934_597452_-	PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated	NA|407aa|down_5|NZ_LR778174.1_597700_598921_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|249aa|down_6|NZ_LR778174.1_599267_600014_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|244aa|down_7|NZ_LR778174.1_599994_600726_-	COG2968, COG2968, Uncharacterized conserved protein [Function unknown]	NA|93aa|down_8|NZ_LR778174.1_608043_608322_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|567aa|down_9|NZ_LR778174.1_608490_610191_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
GCF_902810435.1_SKV38	NZ_LR778174	Veillonella parvula strain SKV38 chromosome 1	4	589050-589157	4	CRISPRCasFinder	no		DinG,csa3,DEDDh,cas3,WYL,cas2,cas1,cas9	Orphan	TGATATTGCAACTAATAAGGAGAA	24	1	1	589074-589133	NZ_LR778174.1_587436-587495	NA	1	1	Orphan	DinG,csa3,DEDDh,cas3,WYL,cas2,cas1,cas9	NA,NA|219aa|down_3|NZ_LR778174.1_595088_595745_+	NA|435aa|up_9|NZ_LR778174.1_572011_573316_+	pfam01964, ThiC_Rad_SAM, Radical SAM ThiC family	NA|66aa|up_8|NZ_LR778174.1_573339_573537_+	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS	NA|257aa|up_7|NZ_LR778174.1_573538_574309_+	PRK00208, thiG, thiazole synthase; Reviewed	NA|367aa|up_6|NZ_LR778174.1_574318_575419_+	PRK09240, thiH, 2-iminoacetate synthase ThiH	NA|213aa|up_5|NZ_LR778174.1_575431_576070_+	PRK08644, PRK08644, sulfur carrier protein ThiS adenylyltransferase ThiF	NA|216aa|up_4|NZ_LR778174.1_576070_576718_+	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI	NA|256aa|up_3|NZ_LR778174.1_576899_577667_+	cd10787, LamB_YcsF_like, LamB/YcsF family of  lactam utilization protein	NA|399aa|up_2|NZ_LR778174.1_577795_578992_+	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	NA|248aa|up_1|NZ_LR778174.1_579066_579810_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|341aa|up_0|NZ_LR778174.1_579796_580819_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|470aa|down_0|NZ_LR778174.1_590613_592023_+	cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM	NA|346aa|down_1|NZ_LR778174.1_592575_593613_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|374aa|down_2|NZ_LR778174.1_593839_594961_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|219aa|down_3|NZ_LR778174.1_595088_595745_+	NA	NA|506aa|down_4|NZ_LR778174.1_595934_597452_-	PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated	NA|407aa|down_5|NZ_LR778174.1_597700_598921_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|249aa|down_6|NZ_LR778174.1_599267_600014_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|244aa|down_7|NZ_LR778174.1_599994_600726_-	COG2968, COG2968, Uncharacterized conserved protein [Function unknown]	NA|93aa|down_8|NZ_LR778174.1_608043_608322_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|567aa|down_9|NZ_LR778174.1_608490_610191_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
GCF_902810435.1_SKV38	NZ_LR778174	Veillonella parvula strain SKV38 chromosome 1	5	2038437-2039915	5,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas9,csa3	DinG,csa3,DEDDh,cas3,WYL,cas2,cas1,cas9	Type II-A,Type II-C,Type II-B	GTTTTATCATAGCGAAAAATTACAGAGTACTAAAAC,NGTTTTATCATAGCGAAAAATTACAGAGTACTAAAAC,GTTTTATCATAGCGAAAAATTACAGAGTACTAAAAC	36,37,36	0	0	NA	NA	NA:NA:NA	22,22,20	22	TypeII-A,TypeII-C,TypeII-B	DinG,csa3,DEDDh,cas3,WYL,cas2,cas1,cas9	NA|269aa|up_9|NZ_LR778174.1_2028805_2029612_-,NA|181aa|up_8|NZ_LR778174.1_2029637_2030180_-,NA|169aa|up_7|NZ_LR778174.1_2030216_2030723_-,NA|144aa|up_6|NZ_LR778174.1_2030794_2031226_-,NA|277aa|up_4|NZ_LR778174.1_2032113_2032944_-,NA|303aa|up_3|NZ_LR778174.1_2032982_2033891_-,NA|95aa|down_2|NZ_LR778174.1_2043651_2043936_-,NA|137aa|down_9|NZ_LR778174.1_2051677_2052088_+	NA|269aa|up_9|NZ_LR778174.1_2028805_2029612_-	NA	NA|181aa|up_8|NZ_LR778174.1_2029637_2030180_-	NA	NA|169aa|up_7|NZ_LR778174.1_2030216_2030723_-	NA	NA|144aa|up_6|NZ_LR778174.1_2030794_2031226_-	NA	NA|272aa|up_5|NZ_LR778174.1_2031246_2032062_-	pfam10020, DUF2262, Uncharacterized protein conserved in bacteria (DUF2262)	NA|277aa|up_4|NZ_LR778174.1_2032113_2032944_-	NA	NA|303aa|up_3|NZ_LR778174.1_2032982_2033891_-	NA	cas2|98aa|up_2|NZ_LR778174.1_2033900_2034194_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|299aa|up_1|NZ_LR778174.1_2034241_2035138_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1065aa|up_0|NZ_LR778174.1_2035158_2038353_-	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	NA|336aa|down_0|NZ_LR778174.1_2040506_2041514_-	cd07534, HAD_CAP, molecular class C acid phosphatases, similar to Haemophilus influenzae e (P4) acid phosphatase; belongs to the haloacid dehalogenase-like hydrolase superfamily	NA|488aa|down_1|NZ_LR778174.1_2041873_2043337_-	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase	NA|95aa|down_2|NZ_LR778174.1_2043651_2043936_-	NA	NA|463aa|down_3|NZ_LR778174.1_2044024_2045413_-	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa	csa3|115aa|down_4|NZ_LR778174.1_2045415_2045760_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|428aa|down_5|NZ_LR778174.1_2046299_2047583_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|393aa|down_6|NZ_LR778174.1_2047698_2048877_-	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|432aa|down_7|NZ_LR778174.1_2049107_2050403_-	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1	NA|316aa|down_8|NZ_LR778174.1_2050549_2051497_-	cd07337, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	NA|137aa|down_9|NZ_LR778174.1_2051677_2052088_+	NA
