Region

Region Position

Best matching Phage(blastn)

Best matching Phage(blastp)

Prophage annotation

DBSCAN-SWA_1

126289 : 132814

Not Available

Listeria_phage(33.33%)

Phage_Proteins_Besthit: Listeria_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

CDS Position	Hit_ID	Hit_Def	E-value	Identity
FNALOPBK_00120\|126289_126751_-	Listeria_phage	47.9	3.1e-31	47.9
FNALOPBK_00121\|126747_127083_-	uncultured_Caudovirales_phage	52.5	4.0e-20	52.5
FNALOPBK_00122\|127299_127728_+	NA	NA	NA	NA
FNALOPBK_00123\|127739_128156_+	Listeria_phage	39.3	1.3e-20	39.3
FNALOPBK_00124\|128433_128823_+	NA	NA	NA	NA
FNALOPBK_00125\|128835_129348_+	Streptococcus_pyogenes_phage	62.7	1.2e-47	62.7
FNALOPBK_00126\|129395_129698_+	NA	NA	NA	NA
FNALOPBK_00127\|129739_130144_+	NA	NA	NA	NA
FNALOPBK_00128\|130130_131999_+	Streptococcus_pyogenes_phage	45.3	1.7e-19	45.3
FNALOPBK_00129\|131995_132814_+	Staphylococcus_phage	35.0	4.2e-39	35.0

Hit_Phage_Def	Alignment Length	Evalue	Identity	Blastn_result

DBSCAN-SWA_2

1145120 : 1154078

Not Available

Hokovirus(28.57%)

Phage_Proteins_Besthit: Hokovirus(28.57%)

CDS Position	Hit_ID	Hit_Def	E-value	Identity
FNALOPBK_01120\|1145120_1145504_+	Hokovirus	40.7	1.4e-16	40.7
FNALOPBK_01121\|1145525_1146509_+	Catovirus	35.3	3.1e-12	35.3
FNALOPBK_01122\|1146523_1147537_+	Catovirus	32.0	6.0e-11	32.0
FNALOPBK_01123\|1147745_1149236_+	Bacillus_virus	49.7	9.5e-114	49.7
FNALOPBK_01124\|1149247_1150072_+	Bacillus_virus	52.6	2.2e-67	52.6
FNALOPBK_01125\|1150084_1150393_+	NA	NA	NA	NA
FNALOPBK_01126\|1150452_1150857_+	NA	NA	NA	NA
FNALOPBK_01127\|1150997_1152542_+	Hokovirus	28.1	3.0e-17	28.1
FNALOPBK_01128\|1152674_1154078_+	Lactococcus_phage	26.0	9.2e-18	26.0

Hit_Phage_Def	Alignment Length	Evalue	Identity	Blastn_result

DBSCAN-SWA_3

1836780 : 1845066

Not Available

Synechococcus_phage(33.33%)

Phage_Proteins_Besthit: Synechococcus_phage(33.33%)

CDS Position	Hit_ID	Hit_Def	E-value	Identity
FNALOPBK_01805\|1836780_1837347_-	Synechococcus_phage	35.9	7.0e-25	35.9
FNALOPBK_01806\|1837343_1838393_-	Prochlorococcus_phage	43.2	1.0e-61	43.2
FNALOPBK_01807\|1838411_1839839_-	Mollivirus	34.6	1.1e-53	34.6
FNALOPBK_01808\|1839823_1842043_-	Microbacterium_phage	41.4	2.6e-160	41.4
FNALOPBK_01809\|1842035_1842719_-	NA	NA	NA	NA
FNALOPBK_01810\|1842722_1842968_-	NA	NA	NA	NA
FNALOPBK_01811\|1842979_1843693_-	Synechococcus_phage	38.7	2.7e-42	38.7
FNALOPBK_01812\|1843773_1845066_-	Gordonia_phage	32.6	7.2e-17	32.6

Hit_Phage_Def	Alignment Length	Evalue	Identity	Blastn_result

DBSCAN-SWA_4

2359226 : 2402352

Listeria phage LP-030-3, complete genome

Listeria_phage(89.55%)

Phage_Proteins_Besthit: Listeria_phage(89.55%)

CDS Position	Hit_ID	Hit_Def	E-value	Identity
FNALOPBK_02320\|2359226_2359424_-	Listeria_phage	66.7	3.9e-15	66.7
FNALOPBK_02321\|2359420_2359654_-	Listeria_phage	94.8	1.8e-35	94.8
FNALOPBK_02322\|2359953_2360187_+	Listeria_phage	48.1	9.2e-08	48.1
FNALOPBK_02323\|2360215_2360587_+	Listeria_phage	92.7	5.3e-58	92.7
FNALOPBK_02324\|2360592_2361042_+	Listeria_phage	100.0	2.4e-76	100.0
FNALOPBK_02325\|2361066_2361564_+	Listeria_phage	95.8	2.3e-88	95.8
FNALOPBK_02326\|2361823_2362612_+	Listeria_phage	100.0	4.2e-153	100.0
FNALOPBK_02327\|2362652_2363498_-	Listeria_phage	89.4	2.0e-137	89.4
FNALOPBK_02328\|2363497_2363779_-	Listeria_phage	94.6	3.4e-41	94.6
FNALOPBK_02329\|2363791_2364157_-	Listeria_phage	100.0	7.4e-12	100.0
FNALOPBK_02330\|2364185_2364344_-	Listeria_phage	98.1	3.0e-18	98.1
FNALOPBK_02331\|2364348_2364666_-	Listeria_phage	92.4	1.3e-49	92.4
FNALOPBK_02332\|2364677_2365751_-	Listeria_phage	96.6	2.8e-192	96.6
FNALOPBK_02333\|2365750_2366779_-	Listeria_phage	99.1	5.6e-190	99.1
FNALOPBK_02334\|2366779_2367805_-	Listeria_phage	98.2	4.3e-198	98.2
FNALOPBK_02335\|2367813_2368632_-	Listeria_phage	93.0	6.1e-147	93.0
FNALOPBK_02336\|2368633_2373997_-	Listeria_phage	93.1	0.0e+00	93.1
FNALOPBK_02337\|2374007_2374613_-	Listeria_phage	100.0	1.3e-109	100.0
FNALOPBK_02338\|2374617_2375040_-	Listeria_phage	99.3	9.1e-70	99.3
FNALOPBK_02339\|2375091_2375382_-	Listeria_phage	96.8	5.7e-39	96.8
FNALOPBK_02340\|2375353_2375788_-	Listeria_phage	97.2	1.5e-75	97.2
FNALOPBK_02341\|2375790_2376198_-	Listeria_phage	98.5	9.0e-67	98.5
FNALOPBK_02342\|2376197_2376536_-	Listeria_phage	100.0	2.2e-58	100.0
FNALOPBK_02343\|2376535_2376898_-	Listeria_phage	95.8	8.6e-61	95.8
FNALOPBK_02344\|2376897_2377293_-	Listeria_phage	97.7	3.7e-65	97.7
FNALOPBK_02345\|2377311_2378313_-	Listeria_phage	97.9	5.0e-183	97.9
FNALOPBK_02346\|2378312_2378903_-	Listeria_phage	89.8	2.6e-75	89.8
FNALOPBK_02347\|2378993_2380121_-	Listeria_phage	95.7	4.3e-199	95.7
FNALOPBK_02348\|2380121_2381837_-	Listeria_phage	94.0	1.6e-261	94.0
FNALOPBK_02349\|2381894_2383214_-	Streptococcus_phage	65.6	8.6e-167	65.6
FNALOPBK_02350\|2383197_2383953_-	Oenococcus_phage	46.1	2.4e-44	46.1
FNALOPBK_02351\|2383998_2384538_-	NA	NA	NA	NA
FNALOPBK_02352\|2384797_2385232_-	Listeria_phage	95.1	9.0e-73	95.1
FNALOPBK_02353\|2385250_2385415_-	Listeria_phage	96.3	6.7e-21	96.3
FNALOPBK_02354\|2385426_2385552_-	Listeria_phage	95.1	1.9e-12	95.1
FNALOPBK_02355\|2385544_2385949_-	Listeria_phage	98.5	1.7e-70	98.5
FNALOPBK_02356\|2385914_2386055_-	Listeria_phage	100.0	2.6e-18	100.0
FNALOPBK_02357\|2386051_2386357_-	Listeria_phage	98.0	1.5e-45	98.0
FNALOPBK_02358\|2386384_2386762_-	NA	NA	NA	NA
FNALOPBK_02359\|2386783_2387266_-	Listeria_phage	93.1	2.7e-78	93.1
FNALOPBK_02360\|2387262_2387442_-	Listeria_phage	87.3	8.1e-20	87.3
FNALOPBK_02361\|2387438_2387909_-	Listeria_phage	89.7	2.9e-40	89.7
FNALOPBK_02362\|2387905_2388349_-	Listeria_phage	87.1	2.1e-45	87.1
FNALOPBK_02363\|2388345_2388543_-	Listeria_phage	95.4	2.0e-27	95.4
FNALOPBK_02364\|2388545_2389142_-	Listeria_phage	52.5	5.8e-54	52.5
FNALOPBK_02365\|2389153_2390116_-	unidentified_phage	38.7	4.5e-48	38.7
FNALOPBK_02366\|2390133_2390388_-	Listeria_phage	97.6	2.7e-37	97.6
FNALOPBK_02367\|2390384_2391314_-	Staphylococcus_phage	40.5	8.8e-17	40.5
FNALOPBK_02368\|2391334_2392144_-	Caldibacillus_phage	54.3	2.1e-78	54.3
FNALOPBK_02369\|2392097_2392979_-	Anoxybacillus_phage	59.0	1.2e-87	59.0
FNALOPBK_02370\|2392975_2393164_-	NA	NA	NA	NA
FNALOPBK_02371\|2393396_2393585_-	Listeria_phage	98.4	1.0e-28	98.4
FNALOPBK_02372\|2393693_2393909_-	Listeria_phage	90.1	1.8e-26	90.1
FNALOPBK_02373\|2393905_2394439_-	Listeria_phage	93.1	1.1e-83	93.1
FNALOPBK_02374\|2394559_2395339_-	Listeria_phage	98.5	1.1e-142	98.5
FNALOPBK_02375\|2395402_2395645_+	Listeria_phage	100.0	1.8e-38	100.0
FNALOPBK_02376\|2395637_2395799_-	Listeria_phage	98.1	1.2e-19	98.1
FNALOPBK_02377\|2395830_2396112_-	Listeria_phage	100.0	1.0e-40	100.0
FNALOPBK_02378\|2396137_2396422_-	Listeria_phage	85.1	2.9e-40	85.1
FNALOPBK_02379\|2396433_2396628_-	Listeria_phage	96.9	6.3e-26	96.9
FNALOPBK_02380\|2396693_2396924_+	Listeria_phage	100.0	4.6e-36	100.0
FNALOPBK_02381\|2396852_2397119_-	Listeria_phage	100.0	2.5e-41	100.0
FNALOPBK_02382\|2397122_2397365_-	Listeria_phage	100.0	1.7e-36	100.0
FNALOPBK_02383\|2397490_2397796_+	Listeria_phage	100.0	6.4e-49	100.0
FNALOPBK_02384\|2397828_2398320_+	Listeria_phage	100.0	3.4e-92	100.0
FNALOPBK_02385\|2398342_2398561_+	Listeria_phage	100.0	5.4e-34	100.0
FNALOPBK_02386\|2398576_2399299_+	Listeria_phage	100.0	1.3e-105	100.0
FNALOPBK_02387\|2399320_2400061_+	Listeria_phage	100.0	4.5e-133	100.0
FNALOPBK_02388\|2400124_2401483_+	Listeria_phage	98.7	3.0e-255	98.7
FNALOPBK_02389\|2401473_2401950_+	NA	NA	NA	NA
FNALOPBK_02390\|2402004_2402352_-	Clostridium_phage	40.7	9.9e-06	40.7

Hit_Phage_ID:NC_024384.1

Hit_Phage_Def:Listeria phage LP-030-3, complete genome

Hit_Phage_Def	Alignment Length	Evalue	Identity	Blastn_result
Listeria phage LP-030-3, complete genome	10154	0.0	89%	blastn.txt
Listeria phage LP-030-3, complete genome	3664	0.0	99%	blastn.txt
Listeria phage LP-030-3, complete genome	2138	0.0	97%	blastn.txt
Listeria phage LP-030-3, complete genome	1754	0.0	87%	blastn.txt
Listeria phage LP-030-3, complete genome	718	0.0	93%	blastn.txt
Listeria phage LP-030-3, complete genome	470	0.0	91%	blastn.txt
Listeria phage LP-030-3, complete genome	440	4	89%	blastn.txt
Listeria phage LP-030-3, complete genome	280	2	89%	blastn.txt
Listeria phage LP-030-3, complete genome	130	4	90%	blastn.txt
Listeria phage LP-030-3, complete genome	343	1	74%	blastn.txt
Listeria phage LP-030-3, complete genome	63	4	90%	blastn.txt
Listeria phage LP-030-3, complete genome	49	2	94%	blastn.txt

DBSCAN-SWA_5

2555805 : 2563649

Not Available

Streptococcus_phage(50.0%)

Phage_Proteins_Besthit: Streptococcus_phage(50.0%)

CDS Position	Hit_ID	Hit_Def	E-value	Identity
FNALOPBK_02546\|2555805_2556777_-	Streptococcus_phage	39.4	5.2e-52	39.4
FNALOPBK_02547\|2556784_2557753_-	Streptococcus_phage	43.3	6.7e-68	43.3
FNALOPBK_02548\|2557754_2558630_-	Thermobifida_phage	29.7	1.9e-08	29.7
FNALOPBK_02549\|2558737_2560468_-	Streptococcus_phage	54.2	7.8e-176	54.2
FNALOPBK_02550\|2560509_2561502_-	NA	NA	NA	NA
FNALOPBK_02551\|2561587_2562571_-	Tupanvirus	36.9	2.2e-50	36.9
FNALOPBK_02552\|2562689_2563649_-	Bacillus_virus	53.7	2.0e-88	53.7

Hit_Phage_Def	Alignment Length	Evalue	Identity	Blastn_result

DBSCAN-SWA_6

2682415 : 2721202

Listeria phage A006, complete genome

Listeria_phage(94.34%)

Phage_Proteins_Besthit: Listeria_phage(94.34%)

CDS Position	Hit_ID	Hit_Def	E-value	Identity
FNALOPBK_02666\|2682415_2682679_+	unidentified_phage	100.0	1.9e-41	100.0
FNALOPBK_02667\|2682683_2683133_+	Listeria_phage	94.6	1.3e-71	94.6
FNALOPBK_02668\|2683206_2683806_-	Listeria_phage	100.0	1.0e-111	100.0
FNALOPBK_02669\|2683792_2683969_-	Listeria_phage	100.0	6.3e-25	100.0
FNALOPBK_02670\|2684207_2684915_-	Listeria_phage	98.7	2.0e-130	98.7
FNALOPBK_02671\|2684914_2685196_-	Listeria_phage	100.0	3.0e-45	100.0
FNALOPBK_02672\|2685195_2685501_-	Listeria_phage	100.0	1.8e-43	100.0
FNALOPBK_02673\|2685551_2687714_-	Listeria_phage	99.7	0.0e+00	99.7
FNALOPBK_02674\|2687726_2689295_-	Listeria_phage	99.6	3.1e-304	99.6
FNALOPBK_02675\|2689291_2694082_-	Listeria_phage	88.2	0.0e+00	88.2
FNALOPBK_02676\|2694394_2694826_-	Listeria_phage	94.4	9.3e-70	94.4
FNALOPBK_02677\|2694874_2695114_-	Listeria_phage	89.9	1.8e-30	89.9
FNALOPBK_02678\|2695136_2695568_-	Listeria_phage	82.9	8.1e-58	82.9
FNALOPBK_02679\|2695539_2695944_-	Listeria_phage	98.4	2.1e-63	98.4
FNALOPBK_02680\|2695940_2696258_-	Listeria_phage	95.2	1.7e-49	95.2
FNALOPBK_02681\|2696247_2696613_-	Listeria_phage	95.9	1.6e-62	95.9
FNALOPBK_02682\|2696612_2696966_-	Listeria_phage	99.1	8.4e-61	99.1
FNALOPBK_02683\|2696966_2697122_-	Listeria_phage	98.0	1.0e-18	98.0
FNALOPBK_02684\|2697135_2698008_-	Listeria_phage	93.8	2.3e-152	93.8
FNALOPBK_02685\|2698030_2698585_-	Listeria_phage	98.9	8.8e-89	98.9
FNALOPBK_02686\|2698680_2699724_-	Listeria_phage	97.1	9.1e-196	97.1
FNALOPBK_02687\|2699728_2701285_-	Listeria_phage	98.8	4.5e-300	98.8
FNALOPBK_02688\|2701299_2702613_-	Listeria_phage	88.3	2.0e-232	88.3
FNALOPBK_02689\|2702557_2703343_-	Listeria_phage	95.1	3.0e-127	95.1
FNALOPBK_02690\|2703382_2703610_-	Listeria_phage	94.7	6.8e-32	94.7
FNALOPBK_02691\|2704155_2704758_-	NA	NA	NA	NA
FNALOPBK_02692\|2704784_2705222_-	Listeria_phage	95.8	8.5e-71	95.8
FNALOPBK_02693\|2705243_2705369_-	Listeria_phage	92.7	3.3e-12	92.7
FNALOPBK_02694\|2705387_2705774_-	Listeria_phage	65.4	5.6e-42	65.4
FNALOPBK_02695\|2705777_2706182_-	Listeria_phage	86.6	4.5e-58	86.6
FNALOPBK_02696\|2706126_2706318_-	Listeria_phage	98.4	1.8e-25	98.4
FNALOPBK_02697\|2706336_2706819_-	Listeria_phage	91.2	7.4e-76	91.2
FNALOPBK_02698\|2706815_2707316_-	NA	NA	NA	NA
FNALOPBK_02699\|2707312_2707714_-	Listeria_phage	72.5	1.1e-43	72.5
FNALOPBK_02700\|2707710_2707971_-	NA	NA	NA	NA
FNALOPBK_02701\|2707970_2708177_-	Listeria_phage	100.0	6.0e-27	100.0
FNALOPBK_02702\|2708173_2708659_-	Listeria_phage	94.4	6.6e-48	94.4
FNALOPBK_02703\|2708655_2708865_-	Listeria_phage	92.8	3.8e-29	92.8
FNALOPBK_02704\|2708861_2709269_-	Listeria_phage	53.7	5.2e-30	53.7
FNALOPBK_02705\|2709265_2709454_-	NA	NA	NA	NA
FNALOPBK_02706\|2709446_2710049_-	Listeria_phage	44.7	4.2e-36	44.7
FNALOPBK_02707\|2710045_2710255_-	Listeria_phage	92.8	2.7e-27	92.8
FNALOPBK_02708\|2710251_2710536_-	Listeria_phage	94.7	4.7e-46	94.7
FNALOPBK_02709\|2710561_2710759_-	NA	NA	NA	NA
FNALOPBK_02710\|2710762_2711668_-	Listeria_phage	93.4	9.1e-144	93.4
FNALOPBK_02711\|2711705_2712617_-	NA	NA	NA	NA
FNALOPBK_02712\|2712609_2714121_-	Paenibacillus_phage	36.2	6.1e-76	36.2
FNALOPBK_02713\|2714353_2714542_-	Listeria_phage	82.3	1.8e-22	82.3
FNALOPBK_02714\|2714644_2714851_-	NA	NA	NA	NA
FNALOPBK_02715\|2714840_2715371_-	Listeria_phage	89.6	2.7e-79	89.6
FNALOPBK_02716\|2715494_2716271_-	Listeria_phage	97.7	6.9e-140	97.7
FNALOPBK_02717\|2716334_2716532_+	Listeria_phage	96.0	4.0e-20	96.0
FNALOPBK_02718\|2716533_2716815_-	Listeria_phage	95.7	1.8e-37	95.7
FNALOPBK_02719\|2716840_2717125_-	Listeria_phage	85.1	4.5e-41	85.1
FNALOPBK_02720\|2717136_2717331_-	Listeria_phage	95.3	1.4e-25	95.3
FNALOPBK_02721\|2717351_2717561_-	Listeria_phage	95.6	3.5e-30	95.6
FNALOPBK_02722\|2717726_2718149_+	Listeria_phage	98.6	7.7e-69	98.6
FNALOPBK_02723\|2718164_2718590_+	Listeria_phage	100.0	2.2e-76	100.0
FNALOPBK_02724\|2718604_2719312_+	Listeria_phage	100.0	2.8e-124	100.0
FNALOPBK_02725\|2719370_2719976_+	NA	NA	NA	NA
FNALOPBK_02726\|2720038_2721202_+	Brevibacillus_phage	31.2	4.4e-50	31.2

Hit_Phage_ID:NC_009815.1

Hit_Phage_Def:Listeria phage A006, complete genome

Hit_Phage_Def	Alignment Length	Evalue	Identity	Blastn_result
Listeria phage A006, complete genome	6527	0.0	99%	blastn.txt
Listeria phage A006, complete genome	6767	0.0	92%	blastn.txt
Listeria phage A006, complete genome	3409	0.0	88%	blastn.txt
Listeria phage A006, complete genome	671	0.0	95%	blastn.txt
Listeria phage A006, complete genome	581	0.0	86%	blastn.txt
Listeria phage A006, complete genome	452	0.0	92%	blastn.txt
Listeria phage A006, complete genome	461	4	87%	blastn.txt
Listeria phage A006, complete genome	363	2	92%	blastn.txt
Listeria phage A006, complete genome	285	8	98%	blastn.txt
Listeria phage A006, complete genome	383	1	86%	blastn.txt
Listeria phage A006, complete genome	256	4	93%	blastn.txt
Listeria phage A006, complete genome	204	2	95%	blastn.txt
Listeria phage A006, complete genome	352	3	81%	blastn.txt
Listeria phage A006, complete genome	332	7	81%	blastn.txt
Listeria phage A006, complete genome	120	9	97%	blastn.txt
Listeria phage A006, complete genome	81	4	100%	blastn.txt
Listeria phage A006, complete genome	165	2	76%	blastn.txt
Listeria phage A006, complete genome	66	1	93%	blastn.txt
Listeria phage A006, complete genome	61	2	87%	blastn.txt

Annotation:

Column name	Description
Region	Detection method + the number assigned to the region, e.g. DBSCAN-SWA_1
Region Position	The start and end positions of the region on the bacterial chromosome
Best matching Phage (blastn)	The phage genome with the longest aligned length with the predicted prophage region based on BLASTN searching (default:e-value=1e-10) BLASTN searching: Blastn the nucleotide sequence of the prophage region with our Virus database (10230 phage complete genomes collected from NCBI), phage_ncbi_refseq_def_info.txt
Best matching Phage(blastp)	The phage taxonomy with the most homologous proteins with the predicted prophage region based on BLASTP searching (default:e-value=1e-7) BLASTP searching: Blastp the protein sequences of the prophage region with our Uniprot protein database (3,531,913 phage proteins collected from UniProt),uniprot_reference_phage_and_virus_TrEMBL_taxonomy_table.txt
Prophage annotation	Click the detail button to show detail annotation of the prophage region, including Identified phage-like proteins and tRNA sites, and BLASTN matching result of the best hitting phage genome

Click the colored region to get the detailed information

genome size:3000464bp