Detection of infecting phages for HMP Gastrointestinal_tract

454 bacteria isolates from human gastrointestinal tract that have completed sequencing and annotation were collected from https://www.hmpdacc.org/hmp/HMRGD/. Candidate phages for 135 bacteria from 55 species were predicted using PHISDetector with high reliability. These interactions provided potential tools for precise manipulation of specific microbes in human gut, benefit for studying the function of intestinal symbiotic bacteria or developing therapies for treating pathogenic bacteria. Users can download these results here!.

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Genome_ID Detail_Info
Escherichia_coli_MS_110-3
Fusobacterium_nucleatum_subsp._animalis_11_3_2
Helicobacter_pylori_GAM105Ai
Bacteroides_salyersiae_WAL_10018_=_DSM_18765_=_JCM_12988
Escherichia_coli_MS_21-1
Escherichia_coli_4_1_47FAA
Fusobacterium_nucleatum_subsp._animalis_D11
Enterococcus_faecium_PC4.1
Fusobacterium_nucleatum_subsp._animalis_21_1A
Streptococcus_sp._HPH0090
Helicobacter_pylori_GAM42Ai
Butyrivibrio_fibrisolvens_16_4
Escherichia_coli_MS_196-1
Helicobacter_pylori_GAM260Bi
Clostridium_sp._M62_1
Fusobacterium_nucleatum_subsp._vincentii_4_1_13
Escherichia_coli_MS_45-1
Escherichia_sp._1_1_43
Klebsiella_pneumoniae_subsp._pneumoniae_WGLW5
Helicobacter_pylori_HP260Bi
Enterobacter_cancerogenus_ATCC_35316
Bifidobacterium_angulatum_DSM_20098_=_JCM_7096
Lactobacillus_reuteri_MM2-3
Enterococcus_faecalis_TX4244
Escherichia_coli_MS_200-1
Streptomyces_sp._HGB0020
Acinetobacter_radioresistens_SH164
Escherichia_coli_MS_117-3
Faecalibacterium_prausnitzii_A2-165
Enterococcus_faecalis_TX1467
Lactobacillus_delbrueckii_subsp._lactis_DSM_20072
Fusobacterium_mortiferum_ATCC_9817
Enterococcus_faecalis_TX2137
Streptococcus_infantarius_subsp._infantarius_ATCC_BAA-102
Citrobacter_youngae_ATCC_29220
Peptoclostridium_difficile_NAP08
Peptoclostridium_difficile_70-100-2010
Enterococcus_sp._7L76
Lactobacillus_ruminis_ATCC_25644
Escherichia_sp._3_2_53FAA
Klebsiella_sp._1_1_55
Helicobacter_pylori_HP116Bi
Helicobacter_pylori_GAM120Ai
Escherichia_coli_MS_78-1
Escherichia_coli_MS_182-1
Lactobacillus_rhamnosus_LMS2-1
Lactobacillus_plantarum_subsp._plantarum_ATCC_14917_=_JCM_1149_=
Lactobacillus_reuteri_JCM_1112
Clostridium_perfringens_WAL-14572
Bifidobacterium_adolescentis_L2-32
Escherichia_coli_MS_84-1
Enterococcus_faecalis_TX1342
Escherichia_coli_MS_185-1
Helicobacter_pylori_HP260AFii
Clostridium_sporogenes_ATCC_15579
Lactobacillus_brevis_subsp._gravesensis_ATCC_27305
Klebsiella_sp._4_1_44FAA
Streptococcus_sp._2_1_36FAA
Lactobacillus_rhamnosus_GG
Escherichia_coli_D9
Escherichia_coli_MS_119-7
Lactobacillus_paracasei_subsp._paracasei_ATCC_25302
Escherichia_sp._4_1_40B
Bifidobacterium_catenulatum_DSM_16992_=_JCM_1194_=_LMG_11043
Faecalibacterium_prausnitzii_L2-6
Streptococcus_equinus_ATCC_9812
Lactobacillus_reuteri_CF48-3A
Fusobacterium_periodonticum_1_1_41FAA
Escherichia_coli_MS_16-3
Peptoclostridium_Clostridium_hiranonis_DSM_13275
Lactobacillus_fermentum_ATCC_14931
Helicobacter_pylori_GAM83Bi
Lactobacillus_fermentum_IFO_3956
Fusobacterium_nucleatum_subsp._animalis_3_1_33
Fusobacterium_gonidiaformans_3-1-5R
Enterococcus_faecalis_TX0104
Escherichia_coli_MS_79-10
Faecalibacterium_cf._prausnitzii_KLE1255
Helicobacter_pylori_GAM268Bii
Enterococcus_faecalis_TX2134
Ruminiclostridium_Clostridium_methylpentosum_DSM_5476
Enterococcus_faecalis_TX1341
Lactobacillus_reuteri_MM4-1A
Enterococcus_faecalis_TX1322
Fusobacterium_ulcerans_12-1B
Faecalibacterium_prausnitzii_SL3_3
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222_=_DSM_20088
Leuconostoc_mesenteroides_subsp._cremoris_ATCC_19254
Ruminiclostridium_Eubacterium_siraeum_DSM_15702
Escherichia_coli_MS_85-1
Bifidobacterium_longum_subsp._infantis_157F
Helicobacter_pylori_GAMchJs106B
Helicobacter_pylori_GAM115Ai
Enterococcus_faecalis_TX1346
Staphylococcus_sp._HGB0015
Escherichia_coli_MS_124-1
Fusobacterium_necrophorum_subsp._funduliforme_1_1_36S
Escherichia_coli_MS_153-1
Escherichia_coli_MS_145-7
Bacillus_smithii_7_3_47FAA
Bacteroides_sp._2_1_16
Escherichia_coli_MS_175-1
Helicobacter_pylori_GAMchJs136i
Enterobacter_cloacae_subsp._cloacae_NCTC_9394
Klebsiella_sp._MS_92-3
Peptoclostridium_difficile_NAP07
Helicobacter_pylori_GAM119Bi
Listeria_innocua_ATCC_33091
Escherichia_coli_SE11
Helicobacter_pylori_GAM260ASi
Helicobacter_pylori_GAM83T
Pseudomonas_sp._2_1_26
Escherichia_coli_MS_107-1
Fusobacterium_nucleatum_subsp._animalis_7_1
Escherichia_coli_MS_57-2
Fusobacterium_ulcerans_ATCC_49185
Escherichia_coli_MS_187-1
Helicobacter_pylori_GAM265BSii
Escherichia_coli_MS_115-1
Escherichia_coli_SE15
Streptococcus_anginosus_1_2_62CV
Lactobacillus_rhamnosus_ATCC_21052
Escherichia_coli_MS_198-1
Bacillus_sp._7_6_55CFAA_CT2
Escherichia_coli_MS_69-1
Helicobacter_pylori_HP260AFi
Lactobacillus_acidophilus_ATCC_4796
Helicobacter_pylori_HP260ASii
Bifidobacterium_bifidum_NCIMB_41171
Escherichia_coli_MS_116-1
Klebsiella_pneumoniae_subsp._pneumoniae_WGLW3
Bacteroides_sp._2_1_56FAA
Fusobacterium_gonidiaformans_ATCC_25563
Escherichia_coli_MS_60-1
Helicobacter_pylori_GAM112Ai