CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP002001	Listeria monocytogenes J0161, complete genome	4 crisprs	DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas1,cas2,DEDDh,csa3,csn2,cas9	4	29	7	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP002001_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP002001_2

553387-553669

Unclear

I-A:NA

Consensus_repeat	Method
GTTTTAG---TTACTTATTTTGAA----ATGTAAAT	PILER-CR
GTTTTAGTTACTTATTTTGAAATGTAAAT	CRISPRCasFinder
GTTTTAGTTACTTATTTTGAAATGTAAAT	CRT

4 spacers

cas6,cas8b2

The CRISPR arrays of CP002001_2

>merge|CP002001|2|553387-553669|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGTTACTTATTTTGAAATGTAAATAAACAGAAATGAAAGATGGTGAAGAAGTCCTTACCGTTTTAGTTACTTATTTTGAAATGTAAATTTTTTTAAGGCAAGTGTCATCGTTTCTAATCCGCGTTTTAGTTACTTATTTTGAAATGTAAATCTAGAACAAAAGAAAAATCATGAGGGATATTTACGTTTTAGTTACTTATTTTGAAATGTAAATGGTTTTGAATGCTGGTGGTGATAGTCCTAATGAAGGTTTTAGTTACTTATTATGAAATGTAAAT

>CP002001|2|1|553387-553669|PILER-CR
GTTTTAGTTACTTATTTTGAAATGTAAAT	AAACAGAAATGAAAGATGGTGAAGAAGTCCTTACC
GTTTTAGTTACTTATTTTGAAATGTAAAT	TTTTTTAAGGCAAGTGTCATCGTTTCTAATCCGC
GTTTTAGTTACTTATTTTGAAATGTAAAT	CTAGAACAAAAGAAAAATCATGAGGGATATTTAC
GTTTTAGTTACTTATTTTGAAATGTAAAT	GGTTTTGAATGCTGGTGGTGATAGTCCTAATGAAG
GTTTTAGTTACTTATTATGAAATGTAAAT

>CP002001|2|1|553387-553669|CRISPRCasFinder
GTTTTAGTTACTTATTTTGAAATGTAAAT	AAACAGAAATGAAAGATGGTGAAGAAGTCCTTACC
GTTTTAGTTACTTATTTTGAAATGTAAAT	TTTTTTAAGGCAAGTGTCATCGTTTCTAATCCGC
GTTTTAGTTACTTATTTTGAAATGTAAAT	CTAGAACAAAAGAAAAATCATGAGGGATATTTAC
GTTTTAGTTACTTATTTTGAAATGTAAAT	GGTTTTGAATGCTGGTGGTGATAGTCCTAATGAAG
GTTTTAGTTACTTATTATGAAATGTAAAT

>CP002001|2|2|553387-553669|CRT
GTTTTAGTTACTTATTTTGAAATGTAAAT	AAACAGAAATGAAAGATGGTGAAGAAGTCCTTACC
GTTTTAGTTACTTATTTTGAAATGTAAAT	TTTTTTAAGGCAAGTGTCATCGTTTCTAATCCGC
GTTTTAGTTACTTATTTTGAAATGTAAAT	CTAGAACAAAAGAAAAATCATGAGGGATATTTAC
GTTTTAGTTACTTATTTTGAAATGTAAAT	GGTTTTGAATGCTGGTGGTGATAGTCCTAATGAAG
GTTTTAGTTACTTATTATGAAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP002001.1\|AEO02593.1\|554075_554639_+\|hypothetical-protein	unknown	unknown	unknown
CP002001.1\|AEO02595.1\|555451_555811_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131113
CP002001.1\|AEO02586.1\|547891_548359_+\|PTS-system-IIA-component	unknown	unknown	gnl\|CDD\|238129
CP002001.1\|AEO02590.1\|550493_550787_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99908
CP002001.1\|AEO02594.1\|554746_555427_+\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
CP002001.1\|AEO02591.1\|550801_552073_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226298
CP002001.1\|AEO02600.1\|560622_561438_-\|phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|223483
CP002001.1\|AEO02588.1\|548784_549435_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
CP002001.1\|AEO02601.1\|561789_562512_+\|CRISPR-associated-protein-cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
CP002001.1\|AEO02585.1\|547261_547864_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
CP002001.1\|AEO02598.1\|558593_559025_+\|universal-stress-protein-family	unknown	unknown	gnl\|CDD\|366180
CP002001.1\|AEO02583.1\|544438_545089_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223254
CP002001.1\|AEO02602.1\|562527_564216_+\|CRISPR-associated-cxxc_cxxc-protein-Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
CP002001.1\|AEO02587.1\|548375_548774_+\|hypothetical-protein	unknown	unknown	unknown
CP002001.1\|AEO02589.1\|549431_550478_+\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
CP002001.1\|AEO02599.1\|559071_560502_-\|capA-domain-containing-protein	unknown	unknown	gnl\|CDD\|225399
CP002001.1\|AEO02596.1\|555817_556276_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
CP002001.1\|AEO02592.1\|552212_553148_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
CP002001.1\|AEO02584.1\|545197_547258_+\|PTS-system-IIA-2-component	unknown	unknown	gnl\|CDD\|226234
CP002001.1\|AEO02597.1\|556657_558493_+\|internalin	unknown	unknown	gnl\|CDD\|380190

Protein	Function_ID	Function_description	E-value
CP002001.1\|AEO02595.1\|555451_555811_-\|hypothetical-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	5.62162e-67
CP002001.1\|AEO02586.1\|547891_548359_+\|PTS-system-IIA-component	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	3.45565e-37
CP002001.1\|AEO02590.1\|550493_550787_+\|hypothetical-protein	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
CP002001.1\|AEO02594.1\|554746_555427_+\|glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	7.71833e-60
CP002001.1\|AEO02591.1\|550801_552073_+\|hypothetical-protein	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
CP002001.1\|AEO02600.1\|560622_561438_-\|phosphoglycerate-mutase	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
CP002001.1\|AEO02588.1\|548784_549435_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	4.74405e-108
CP002001.1\|AEO02585.1\|547261_547864_+\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	1.67992e-75
CP002001.1\|AEO02598.1\|558593_559025_+\|universal-stress-protein-family	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
CP002001.1\|AEO02583.1\|544438_545089_+\|hypothetical-protein	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	1.40072e-62
CP002001.1\|AEO02602.1\|562527_564216_+\|CRISPR-associated-cxxc_cxxc-protein-Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	5.75294e-26
CP002001.1\|AEO02601.1\|561789_562512_+\|CRISPR-associated-protein-cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.75155e-33
CP002001.1\|AEO02589.1\|549431_550478_+\|alcohol-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
CP002001.1\|AEO02599.1\|559071_560502_-\|capA-domain-containing-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	1.43469e-99
CP002001.1\|AEO02596.1\|555817_556276_-\|transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	8.31646e-13
CP002001.1\|AEO02592.1\|552212_553148_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	2.38027e-153
CP002001.1\|AEO02584.1\|545197_547258_+\|PTS-system-IIA-2-component	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	2.1337e-80
CP002001.1\|AEO02597.1\|556657_558493_+\|internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	1.95498e-119

>CP002001.1|AEO02592.1|552212_553148_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSSIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>CP002001.1|AEO02591.1|550801_552073_+|hypothetical-protein
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>CP002001.1|AEO02590.1|550493_550787_+|hypothetical-protein
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>CP002001.1|AEO02589.1|549431_550478_+|alcohol-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>CP002001.1|AEO02588.1|548784_549435_+|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
>CP002001.1|AEO02587.1|548375_548774_+|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>CP002001.1|AEO02586.1|547891_548359_+|PTS-system-IIA-component
MDVLEYFKEEMVRFSNEQDKEKLLTEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>CP002001.1|AEO02585.1|547261_547864_+|SIS-domain-containing-protein
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVETIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>CP002001.1|AEO02584.1|545197_547258_+|PTS-system-IIA-2-component
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADINDSNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>CP002001.1|AEO02583.1|544438_545089_+|hypothetical-protein
MHLDSANLDDVKKIQASSIFKGITTNPSILVKEKCNRQTAINRILELTDKQVFVQTVGFTYEEILADARMLLTMFGKDKIAIKIPAHEAGTNVIDTLKKEDKTIQILGTAIYSADQAITAALAGADFVAPYVNRMSAANIDPFKEISQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK
>CP002001.1|AEO02593.1|554075_554639_+|hypothetical-protein
MPILLLATILASCSSPNEKITKDTKISKTITIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>CP002001.1|AEO02594.1|554746_555427_+|glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLFFPESLNVFHWHQDTFALPTGSTRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
>CP002001.1|AEO02595.1|555451_555811_-|hypothetical-protein
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>CP002001.1|AEO02596.1|555817_556276_-|transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTSAGKELENELGDAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>CP002001.1|AEO02597.1|556657_558493_+|internalin
MKKALKLFLAMICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSARLSITEDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVNPVPPTPEVKPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>CP002001.1|AEO02598.1|558593_559025_+|universal-stress-protein-family
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>CP002001.1|AEO02599.1|559071_560502_-|capA-domain-containing-protein
MKRRTYVIITGLVLIFIAGAFWITNSTNQSDQKATQTEPLKKTSPANVKTISSEAKKTLNSLASSGADKASISDLNQLIKELKSYPVEKNDSGAYLQNLTACLEAVKSYTTGKADEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTIINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIKGGVTEYTYFDPF
>CP002001.1|AEO02600.1|560622_561438_-|phosphoglycerate-mutase
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>CP002001.1|AEO02601.1|561789_562512_+|CRISPR-associated-protein-cas6
MRLKINCDFDSKIISKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKGAEIQLNEANCIINFSTGDAETGIIFYNALMSLRGSKVLFGAGNHITVKNIQIVPEKKIIGKRTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLMDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGIGTMTGSGFGMIEQF
>CP002001.1|AEO02602.1|562527_564216_+|CRISPR-associated-cxxc_cxxc-protein-Cst1
MRTEIEVRANDWLINAGLTGFLNIVGKENVRIDGQAIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLLKQTKFIDPYLDYKTSFLDPVIDYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK

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Crispr_ID: CP002001_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP002001_3

568865-570900

Unclear

I-A:NA

Consensus_repeat	Method
GTTTTAA---CTACTTATTATGAA----ATGTAAAT	PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	CRT

31 spacers

cas2,cas1,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of CP002001_3

>merge|CP002001|3|568865-570900|PILER-CR,CRISPRCasFinder,CRT
GTTTTAACTACTTATTATGAAATGTAAATAAAGACCTTCGATTTCATTCTCACTTTCCAGTTAATGTTTTAACTACTTATTATGAAATGTAAATTTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGACGTTTTAACTACTTATTATGAAATGTAAATCGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAAGTTTTAACTACTTATTATGAAATGTAAATACGTTGGACAACGAGGTGAGTATGATATGACTCAAATGTTTTAACTACTTATTATGAAATGTAAATGCGGAATGCGAAGTTGTTATATATAACTTATCTCGCGTTTTAACTACTTATTATGAAATGTAAATTCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATGGTTTTAACTACTTATTATGAAATGTAAATGTGCATATCTCCTATATTCATGGCTGTATATGTGTGTTTTAACTACTTATTATGAAATGTAAATGTCCACATCGACAATAAAAAACACATTGTATCACTTGTTTTAACTACTTATTATGAAATGTAAATCTGGTTACTCAACTGGCGACAGTAATACACCTCAATGTTTTAACTACTTATTATGAAATGTAAATTTTGGATAGGTTGTTTCTGATAAATAGGTTCACGGTTTTAACTACTTATTATGAAATGTAAATAAGTCTACTTGGATTTAGCTCTACACCTGCAACATGAGTTTTAACTACTTATTATGAAATGTAAATAGAAAAAAAACATCTTTCCAATTTGTTGTTTTGCGTTTTAACTACTTATTATGAAATGTAAATAGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTAGTTTTAACTACTTATTATGAAATGTAAATTTGTTCGACGGCTTAGACAACCATCACGCTTCTTTAGTTTTAACTACTTATTATGAAATGTAAATTATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGAGTTTTAACTACTTATTATGAAATGTAAATCTCATAAGGATTTCGAGGCGGGTTAAACGACATGTAGTTTTAACTACTTATTATGAAATGTAAATGCTTTTTTCAACAATTTTATCACCAGATGTCATTAGTTTTAACTACTTATTATGAAATGTAAATTGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTCGTTTTAACTACTTATTATGAAATGTAAATAAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGGGTTTTAACTACTTATTATGAAATGTAAATGTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTTGTTTTAACTACTTATTATGAAATGTAAATTGTTATCTCCTGTGATGTAAAATAACCCTTCTATCGTTTTAACTACTTATTATGAAATGTAAATTAATACAAAATATTCATAACTCCTACATCATTATATAGTTTTAACTACTTATTATGAAATGTAAATTTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTCGTTTTAACTACTTATTATGAAATGTAAATGGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGCGTTTTAACTACTTATTATGAAATGTAAATCACGTACTTTAATCGGCATCAAACCACCTCGATTTCGTTTTAACTACTTATTATGAAATCTAAATCAAGATATGCTAGAAATGGCGCAAATAGCGCGCGGTTTTAACTACTTATTATGAAATGTAAATACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATATGTTTTAACTACTTATTATGAAATGTAAATCAAAACAGAGAACGCGTGTTCATTATCGGACATCTTAGTTTTAACTACTTATTATGAAATGTAAATTTTTGAAATATGAGGACTTAGAAAATGAAAAAAATGTTTTAACTACTTATTATGAAATGTAAATAAAAACTATGCAATTAGCAAAGTGATTTTATGTAATTGTTTTAACTACTTATTATGAAATATAAATTAACGAGCCAATTAAACCATCTTCTTCTAGTAATGTTTTAACTACTTATTATGAAATCATAAA

>CP002001|3|2|568865-570837|PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC
GTTTTAACTACTTATTATGAAATGTAAAT	CACGTACTTTAATCGGCATCAAACCACCTCGATTTC
GTTTTAACTACTTATTATGAAATCTAAAT	CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT

>CP002001|3|2|568865-570900|CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC
GTTTTAACTACTTATTATGAAATGTAAAT	CACGTACTTTAATCGGCATCAAACCACCTCGATTTC
GTTTTAACTACTTATTATGAAATCTAAAT	CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT	TAACGAGCCAATTAAACCATCTTCTTCTAGTAAT
GTTTTAACTACTTATTATGAAATCATAAA

>CP002001|3|3|568865-570900|CRT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC
GTTTTAACTACTTATTATGAAATGTAAAT	CACGTACTTTAATCGGCATCAAACCACCTCGATTTC
GTTTTAACTACTTATTATGAAATCTAAAT	CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT	TAACGAGCCAATTAAACCATCTTCTTCTAGTAAT
GTTTTAACTACTTATTATGAAATCATAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP002001.1\|AEO02613.1\|576447_576891_+\|hypothetical-protein	unknown	unknown	unknown
CP002001.1\|AEO02601.1\|561789_562512_+\|CRISPR-associated-protein-cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
CP002001.1\|AEO02611.1\|574071_575388_-\|chitobiose-specific-6-phospho-beta-glucosidase-ChbF	unknown	unknown	gnl\|CDD\|133432
CP002001.1\|AEO02609.1\|571488_572904_+\|drug-resistance-transporter	unknown	unknown	gnl\|CDD\|129794
CP002001.1\|AEO02604.1\|565061_565835_+\|CRISPR-associated-protein-cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
CP002001.1\|AEO02608.1\|570972_571341_-\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|226282
CP002001.1\|AEO02616.1\|580229_580970_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
CP002001.1\|AEO02617.1\|581199_582675_+\|transmembrane-protein	unknown	unknown	unknown
CP002001.1\|AEO02610.1\|573032_574040_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224851
CP002001.1\|AEO02605.1\|565902_568086_+\|ATP-dependent-RNA-helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP002001.1\|AEO02603.1\|564205_565075_+\|devr-family-CRISPR-associated-regulatory-protein	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
CP002001.1\|AEO02614.1\|576936_578598_-\|sulfate-transporter	unknown	unknown	gnl\|CDD\|223732
CP002001.1\|AEO02602.1\|562527_564216_+\|CRISPR-associated-cxxc_cxxc-protein-Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
CP002001.1\|AEO02615.1\|578853_580185_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227659
CP002001.1\|AEO02612.1\|575589_576342_+\|phosphosugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
CP002001.1\|AEO02599.1\|559071_560502_-\|capA-domain-containing-protein	unknown	unknown	gnl\|CDD\|225399
CP002001.1\|AEO02607.1\|568388_568667_+\|CRISPR-associated-protein-cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP002001.1\|AEO02600.1\|560622_561438_-\|phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|223483
CP002001.1\|AEO02606.1\|568141_568384_+\|CRISPR-associated-protein-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
CP002001.1\|AEO02598.1\|558593_559025_+\|universal-stress-protein-family	unknown	unknown	gnl\|CDD\|366180

Protein	Function_ID	Function_description	E-value
CP002001.1\|AEO02601.1\|561789_562512_+\|CRISPR-associated-protein-cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.75155e-33
CP002001.1\|AEO02611.1\|574071_575388_-\|chitobiose-specific-6-phospho-beta-glucosidase-ChbF	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
CP002001.1\|AEO02609.1\|571488_572904_+\|drug-resistance-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.83532e-79
CP002001.1\|AEO02604.1\|565061_565835_+\|CRISPR-associated-protein-cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.41915e-23
CP002001.1\|AEO02608.1\|570972_571341_-\|integral-membrane-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	1.10012e-41
CP002001.1\|AEO02616.1\|580229_580970_-\|transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	2.56491e-51
CP002001.1\|AEO02610.1\|573032_574040_+\|hypothetical-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.01833e-20
CP002001.1\|AEO02605.1\|565902_568086_+\|ATP-dependent-RNA-helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	8.13135e-60
CP002001.1\|AEO02603.1\|564205_565075_+\|devr-family-CRISPR-associated-regulatory-protein	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.33672e-55
CP002001.1\|AEO02614.1\|576936_578598_-\|sulfate-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	3.54266e-147
CP002001.1\|AEO02602.1\|562527_564216_+\|CRISPR-associated-cxxc_cxxc-protein-Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	5.75294e-26
CP002001.1\|AEO02615.1\|578853_580185_+\|hypothetical-protein	gnl\|CDD\|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	1.98396e-75
CP002001.1\|AEO02612.1\|575589_576342_+\|phosphosugar-binding-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	5.24308e-64
CP002001.1\|AEO02599.1\|559071_560502_-\|capA-domain-containing-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	1.43469e-99
CP002001.1\|AEO02607.1\|568388_568667_+\|CRISPR-associated-protein-cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.1393e-30
CP002001.1\|AEO02600.1\|560622_561438_-\|phosphoglycerate-mutase	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
CP002001.1\|AEO02606.1\|568141_568384_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	5.76127e-33
CP002001.1\|AEO02598.1\|558593_559025_+\|universal-stress-protein-family	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27

>CP002001.1|AEO02607.1|568388_568667_+|CRISPR-associated-protein-cas2
MYVILIYDISIENGGAKVWRNVFKICKKYLTHVQKSVFEGEITPALLVKLRMELDKYIRDDQDSVIVFSSRQQRWLEKEFWGLTDEKTSNFF
>CP002001.1|AEO02606.1|568141_568384_+|CRISPR-associated-protein-Cas1
MLNKHIITEDDFEKDANFCYMKKAARQKVLQAYDLRMKETIKHRDLGRNVSYRHLIRLECYKLVKHLMNDKEYEAFKIWW
>CP002001.1|AEO02605.1|565902_568086_+|ATP-dependent-RNA-helicase
MHKYLAKSNPEETIQEHTDNLLKNYQRLKKLYPAVEIDWYLLELVCLLHDLGKMNLLFQTKLGNASGKGKEIPHGYLSVAFVPDSKLEEMGYSEDEIKVVYQAIARHHERKYDFSDSEWKKEIIKLEEQWAGFIYSQLGGNAEYSSEVEMLYFYPGSRIFEGNSAADAETFKKYVLLKGLLNRIDFAASGGIDVELENDFLMDSMEVQLAHFKAENPEADWNALQKYMMQHQNENIVVIAETGMGKTEAGLLWLGNNKGFFTLPLRAAINAIYERITKNIVTTNQAERVGLLHSETYSQYLLHEGNAEMDIDEYYTRTRQMSLPITICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLILGLSYIDKFGGKFCIMTATLPGIVTDLLLENGVDFVQPEEKFVSSRIRHSMEMVHTEIESEFIKPFFNNNRILVICNTISKAKKIYSELKEHFQGEEIHLIHSQFIKRDRSAKEKAIFKDGQKDSTKKCIWVATQVVEASLDIDFDLLFTELSDVNGLFQRMGRCYRNRALDVDTNVYVFDGGAKVCSGIGTFIDKLIFVNSKTILNEHAGVLTEEKKMELVERVYSTEALRGSEFYNDLRKTINYVKAFDSYELDKADVRRRFRNINSVSVIPEEVWQDNAEEINSYFVTLRKTSKEISTKEKIIARTNLAEFMVSIPDYLYKKGESVVREINRYESVIEFKCGYSSDVGVFMR
>CP002001.1|AEO02604.1|565061_565835_+|CRISPR-associated-protein-cas5
MKAIRVRLWQDLVNFKKPTSFQLKETYPLPPYSTVIGMVHTLCGFTSYHEMKISIQGKYFSKVNDLATRYEFKNGMTYDASRHQIKVDKYGVSRGVSTVELLVDLELLLHIIPEDPSLVPIIEKAFREPIEFPSLGRREDIATIQKVEVVDVEKRQPKKSTEISDGYNAYVPISLTENNSVHFKSHESSVGRDKLLGTRYLLTEKYERVNHGTEKAPKFFRKWRKKDVIYSSRIFVSKKDVFFFDEDDYLVFIEEEE
>CP002001.1|AEO02603.1|564205_565075_+|devr-family-CRISPR-associated-regulatory-protein
MKNKGLAMTIIFQAESANYGESLGNISSLKKISRNNGDQYTYISRQAIRYNLMDQIGEKEAPVKAEGGGDKKVIQFLSEATITDFPELDFFGYLKTEKGSGGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKLNENMNIAQAEIHKSYYRYTITIDLDQIGIDGEIALDNKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNIVDVADNNIVIKNIKDLLTYEDIKENTRVGIIDGQFANSDEVKVELKAESVPAFFNDIKGKIDAYYESN
>CP002001.1|AEO02602.1|562527_564216_+|CRISPR-associated-cxxc_cxxc-protein-Cst1
MRTEIEVRANDWLINAGLTGFLNIVGKENVRIDGQAIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLLKQTKFIDPYLDYKTSFLDPVIDYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK
>CP002001.1|AEO02601.1|561789_562512_+|CRISPR-associated-protein-cas6
MRLKINCDFDSKIISKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKGAEIQLNEANCIINFSTGDAETGIIFYNALMSLRGSKVLFGAGNHITVKNIQIVPEKKIIGKRTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLMDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGIGTMTGSGFGMIEQF
>CP002001.1|AEO02600.1|560622_561438_-|phosphoglycerate-mutase
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>CP002001.1|AEO02599.1|559071_560502_-|capA-domain-containing-protein
MKRRTYVIITGLVLIFIAGAFWITNSTNQSDQKATQTEPLKKTSPANVKTISSEAKKTLNSLASSGADKASISDLNQLIKELKSYPVEKNDSGAYLQNLTACLEAVKSYTTGKADEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTIINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIKGGVTEYTYFDPF
>CP002001.1|AEO02598.1|558593_559025_+|universal-stress-protein-family
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>CP002001.1|AEO02608.1|570972_571341_-|integral-membrane-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGMAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVVVLLV
>CP002001.1|AEO02609.1|571488_572904_+|drug-resistance-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPRKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK
>CP002001.1|AEO02610.1|573032_574040_+|hypothetical-protein
MMAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKLIRDLVENEEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLLGEPEFVEDMSGEDLDITALKRNTKDIICAFPKISCVVIGVPGIEIGGKLRAMDFPLLLNVQLRETLEAEVNLPVLVETDTNAAILGYKNRPVKEENIVGLYYPERFPPGAGLLMNGEILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMVLLTMSFYDPETIVLYTNFYFGQKDFMEELKEELKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI
>CP002001.1|AEO02611.1|574071_575388_-|chitobiose-specific-6-phospho-beta-glucosidase-ChbF
MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAGREKLEIVGNLAKRMVKKAGVNMEIHLTLDREEALKDADFVTTQLRVGLLDARVKDERIPNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVLRYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTKDVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAEHGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQIVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAEAAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK
>CP002001.1|AEO02612.1|575589_576342_+|phosphosugar-binding-transcriptional-regulator
MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVSTTTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQIQNAVEILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLSDKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEMYQEANITSQLPALYTIENIAREIRTQLDKEKM
>CP002001.1|AEO02613.1|576447_576891_+|hypothetical-protein
MYSNMKEKVVFTLIMCSLMILCMSSYNIFLENGIGTDSLLIVLKAFVPFLFIGFLLDFFVVGKIVYRLHALLVSEDASKFKKIIMMQLLMVTFMCVLMSTLSLIVNQGEWSHLGILILRNYFVALFLQIFIVSPFVRLISPRIFALL
>CP002001.1|AEO02614.1|576936_578598_-|sulfate-transporter
MFKHILLSLNGYKISYLRNDVISGVGVAALTIPVAMGYAQVAGLPPIYGLYASFLPVIAYVIFASSPQLIFGIDATASAITGSIILGTAGLAAGSKEAIALAPILAFFCAIFLVLFSVLKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGDSFFSSLGIIFGQFFQSNWISFAMGVVTVIIVITCKKVIPKIPMSLVVLVLGTMAAYFFKLDQYNVDIVGKIPVGFPSLALPDFGASSWALAIGGGLVCAIATFAGSLLPSESFAMRNKYTIDDNRELFAYGVSNFVAAFSGCSPASASVSRTAANEQFRGKTQMVSIVAATIIALIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKVSRREATVWIVAALGTLLVGVIFGVLLGIFLSFINVVSRSMKTPIAILGVIEGRHGYFDLKRKSEAKPIPNVVIYRYSASLFFGNFNKFADGLKEAVQDDTKLVIFEASAIINIDTTATESMKDLLKWLDDKGIEYYFADLIDHLKTSFRKHDLGYLIDNGYTKKTVEDALDAYYAEHK
>CP002001.1|AEO02615.1|578853_580185_+|hypothetical-protein
MATQKNLVDLATKAYIYGFPFIFNTQQIERYVTVGIGGTKQVPFNNFTHASRLAEPSDKFVSVNNDTIYSNAPIDVSAGPVVLSVPDTSGRYYVLQFVDAWSNNFAYVGKRATGTSAGKFLLTPPNWNGDVPADMIEIKFPTNIGIIIGRLACDGEADLPTVRELQEQLKITPLNEGKEVDGFPEYDRSLGKELAFFEQLRVYMAQFPPAERDLVKQESFAPIGLMEKGVSPYSNPSEELKNVLKEGAKAGLANIKKATTNFKSENGWGLTQHLFDYNADFFEIGTKKSLDWVIEDREEAYIIRAVSAITALWGNHGYEAVYLMTWTDTDGNALNGKNKYTLELNPIPPVDSFWSITMYDLPEYFLCENPINRYSIGDRTPGIQYNDDGGITIVVSKDEPTDPKERANWLPAPDAEFRPMFRLYNPQQPLVDGSYHFPGFEKK
>CP002001.1|AEO02616.1|580229_580970_-|transcriptional-regulator
MQIKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSSNPYEEEARKLWGDKVVEKANEKVNNMSEKEQLTLKESFDAEFRHLASVRKLTPESEEAQLEIDHFFHYLNDTHGNIYSLEAFASLGEMYVNDERFTKNIDQFGDGLSQFLQEAMTIYAKNK
>CP002001.1|AEO02617.1|581199_582675_+|transmembrane-protein
MIRKVKSISMWLWHHLTPQIFAVICVFIITIIALFMPPYIGMADNGDFFRIFSSNGLFVNNTNYDALQFGHFVKEFGIYQYFNENQVAIYSSQSIFIQMALLLNKLFWSTTVFDVRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYVVAALTVFIFADTAYTAYFNSFFSEGLILIMMLYISAGFLLLYQHKYNDYAMLGLIFVASLILITAKQQNAPIAVVIAVCGILVFFIRKNRAFRISAAATFLVIFLSGVVMYAFIPGEFVTINQYQTMTRGVLLDSENPEKSLEEMGMNSEFALLKGTNFYQKYKMIDLDSKLMEKEFYPNYNFVTVLSYYLENPKQFGKMLDLSAQNSFSIRPFEMGNFEKATGYKFKEKTHFFSAYSDVKEKFAPAKFTFLILWALVFLICYGVSAFKHFREKNIRGTLLFDLIVLLIGSGFAVILVTIVGDGEADLTKHNFLFNVCFDLTMLIGAASLLEVYLKKRGERNA

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Crispr_ID: CP002001_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP002001_4

2532876-2533037

Orphan

Consensus_repeat	Method
TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of CP002001_4

>merge|CP002001|4|2532876-2533037|CRISPRCasFinder
TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGGGATTGGTTGAATTTAATAATTTGTGCTTCCCTTTTCGGGTTGTTCGTCCACTTTTTTTAATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG

>CP002001|4|3|2532876-2533037|CRISPRCasFinder
TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	GATTGGTTGAATTTAATAATTTGTGCTTCCCTTTTCGGGTTGTTCGTCCACT
TTTTTTAATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP002001.1\|AEO04543.1\|2523476_2524421_-\|internalin	unknown	unknown	gnl\|CDD\|275380
CP002001.1\|AEO04548.1\|2532002_2532749_-\|carboxylesterase	unknown	unknown	gnl\|CDD\|224561
CP002001.1\|AEO04544.1\|2524481_2527757_-\|glycosyl-hydrolase,-family-31	unknown	unknown	gnl\|CDD\|224418
CP002001.1\|AEO04555.1\|2538460_2539228_-\|triosephosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
CP002001.1\|AEO04556.1\|2539261_2540452_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
CP002001.1\|AEO04542.1\|2519529_2523462_-\|glycosyl-hydrolase,-family-31	unknown	unknown	gnl\|CDD\|224418
CP002001.1\|AEO04540.1\|2517415_2517985_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99750
CP002001.1\|AEO04551.1\|2534370_2535090_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223669
CP002001.1\|AEO04550.1\|2533444_2534188_-\|carboxylesterase	unknown	unknown	gnl\|CDD\|224561
CP002001.1\|AEO04553.1\|2535498_2536791_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
CP002001.1\|AEO04547.1\|2529587_2531969_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
CP002001.1\|AEO04539.1\|2516474_2517371_-\|helix-turn-helix-type-11-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
CP002001.1\|AEO04546.1\|2529107_2529572_-\|SsrA-binding-protein	unknown	unknown	gnl\|CDD\|376590
CP002001.1\|AEO04541.1\|2518160_2518580_-\|hypothetical-protein	unknown	unknown	unknown
CP002001.1\|AEO04545.1\|2528139_2529048_+\|transcriptional-activator	unknown	unknown	gnl\|CDD\|238045
CP002001.1\|AEO04557.1\|2540586_2541597_-\|glyceraldehyde-3-phosphate-dehydrogenase-type-I	unknown	unknown	gnl\|CDD\|273675
CP002001.1\|AEO04552.1\|2535222_2535390_-\|hypothetical-protein	unknown	unknown	unknown
CP002001.1\|AEO04558.1\|2541628_2542675_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
CP002001.1\|AEO04554.1\|2536926_2538459_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
CP002001.1\|AEO04549.1\|2533111_2533345_-\|preprotein-translocase-SecG-subunit	unknown	unknown	gnl\|CDD\|224233

Protein	Function_ID	Function_description	E-value
CP002001.1\|AEO04543.1\|2523476_2524421_-\|internalin	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	4.02295e-06
CP002001.1\|AEO04548.1\|2532002_2532749_-\|carboxylesterase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	3.8639e-136
CP002001.1\|AEO04544.1\|2524481_2527757_-\|glycosyl-hydrolase,-family-31	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	0
CP002001.1\|AEO04555.1\|2538460_2539228_-\|triosephosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	3.82891e-145
CP002001.1\|AEO04558.1\|2541628_2542675_-\|transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	5.20149e-91
CP002001.1\|AEO04542.1\|2519529_2523462_-\|glycosyl-hydrolase,-family-31	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	0
CP002001.1\|AEO04540.1\|2517415_2517985_-\|hypothetical-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	2.8348e-39
CP002001.1\|AEO04551.1\|2534370_2535090_-\|hypothetical-protein	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.44979e-18
CP002001.1\|AEO04553.1\|2535498_2536791_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP002001.1\|AEO04547.1\|2529587_2531969_-\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
CP002001.1\|AEO04539.1\|2516474_2517371_-\|helix-turn-helix-type-11-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.6084e-71
CP002001.1\|AEO04546.1\|2529107_2529572_-\|SsrA-binding-protein	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	2.29197e-92
CP002001.1\|AEO04550.1\|2533444_2534188_-\|carboxylesterase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	1.94931e-122
CP002001.1\|AEO04545.1\|2528139_2529048_+\|transcriptional-activator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.22542e-08
CP002001.1\|AEO04557.1\|2540586_2541597_-\|glyceraldehyde-3-phosphate-dehydrogenase-type-I	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
CP002001.1\|AEO04556.1\|2539261_2540452_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
CP002001.1\|AEO04554.1\|2536926_2538459_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
CP002001.1\|AEO04549.1\|2533111_2533345_-\|preprotein-translocase-SecG-subunit	gnl\|CDD\|224233	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion].	6.04836e-13

>CP002001.1|AEO04548.1|2532002_2532749_-|carboxylesterase
MKITPPQPFLFEKGKRAVLLLHGFTGSSADVRILGRFLQENNYTCYAPQYRGHGVSPDLLLKTGPNDWWEDVLEAYDHLKSLGYTEIAVAGLSLGGLFSLKLGFSRPLKGIIAMSTPTRMDSSSPIIQGFLDYVRNYKKLEGKTTEQIDAEMVAYKDAPMNTIAKLKDEISGVVAEIDMIYAPIMVVQGEKDDMVDVSGAQLIYDTVESTKKELHWFKESGHVITLDKERKEVNQAILTFLDSLDWQE
>CP002001.1|AEO04547.1|2529587_2531969_-|ribonuclease-R
MEQKQMEEKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRKNRYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRKGDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHKVIVELTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDVVDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDIEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEINQEGHVVNHEIFESIIKTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEARVVVDEDGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPKEDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEHSSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSDKQKRQREKPIDKTRNFKSSSKNNRNKRRTGKSEDVKPKTERKDDEWYTKPKKKKKKKPFYQGVAKESPKKKKRR
>CP002001.1|AEO04546.1|2529107_2529572_-|SsrA-binding-protein
MPKGDGKLVAQNKKARHDYAIEETFEAGIVLQGTEIKSVRNARVNLKDSYARIDKGEIFLHNMHISPYEQGNRYNHDPLRTRKLLLHKKQISRLIGETKESGYSIVPLKMYIKDGYAKVLIGVARGKKKYDKRQDLKQKEAKRDIERAFKERQQ
>CP002001.1|AEO04545.1|2528139_2529048_+|transcriptional-activator
MQNVGDTLKFIRKSKNLTQQEACTGALSRSNYQKIENNKIMPSMDRFIQLLLNFNMTLEEFEFVKRDFTPSPKENILYLYSKIITSSETDILLDVISKCDEYLATQNDYFISDIKASLEGILLVEKEHDFELARQKVTYIWDRLSEADELFWNDILILRNIFFIFENETAQHIVNRLIKQLKKYRYLHPTLPIEISLHVNRATYLILDEKYELALHYIEQSIKIAKQNHYYLQFCMAIAKKGIVLYKLGQKQDGKRFMQRALRVAKFLEEERILNGIKNEIDYFLHDELPVLSLNEFTKIDI
>CP002001.1|AEO04544.1|2524481_2527757_-|glycosyl-hydrolase,-family-31
MKRRTRKCSLVFILGILIFSCLSGFGTNVFAMDGEYHSPYGDDDLYSVQPTERSPRDPKAGEDVILNITTWPIEDGQNVWVEWTKNGVAQENVTAAYDYNSGNNTYWKADLGKFEKGDEITYTTKGSTNGGTAYESGPFTFYVTDWEYVQDVTSVVDNGDSITLNMTATAGDFSPKLYLSFEDLDTLRMELSPTGKETGHAGKSGYTVEDTAEKVTVTTEDLSIEIQKSPYRMEVHQADGTLLTSEYTTANSLGWLTDGKNVINQYQNNFMTPSDEAFYGFGERYDTINQRGKDVETYVYNEYQDQAQKERTYLAVPFFVSANKYGMYVNSDFHSQFQMASKVEDKYSFVLDNDGDMTNMLDYYVISGKDQNDIVNNYTDITGKTTLLPKWAFGLWMSANEWDRESDVSSALSNAKANDIPATGFVLEQWSDEETYYIWNNATYTAKKNGEAFSYDDFTFNGKWTDPKGMVDSVHDAGMNIVLWQVPVLKDDGTVYEQRDNDEAYMISQGYSADDGTGAPYRVPASQWFGNGILLDFTNKDAVDWWTSQREYLLTEVGIDGFKTDGGEMVWGRDTTFSNGEKGQEMRNRYPTDYVSSYFDFAKSINPEAVSFSRSGTSGAQKSGIYWSGDQTSTFDSFQASLKAGLSASTSGVSYWAWDMAGFTGDYPTAELYKRATAMAAFAPIMQFHSEKSDPSPSEERSPWNAVARTGDETILPTFQKYLYTRMNLLPYIYTAAKDTADNGKSMMRQMAMDYPEDINARDLDEQYMFGDDLLVAPIVQEGQTEKEVYLPEGEWVDLWNGGIHPGGETISYYADVDTLPVFAKAGAIIPMNMTDGYQLGQNVGNDLKSYDNLTFRVYPSGDSEYSFYDDVNGGEMRDISVSEDFANEKVSVDLPAMADETTMQVFSTEPTSVTIDGADVAKADTLGAFNEATTGYYYDTVQNLTYVKAAAKDAKQAIVLNGVNHAPYEAEFAHLTNVSTASDHAGYTGTGFVAGFDAEKEAVEFDVDAVDGASDYTMEVRYSAGVEDATRTVYINGKKQQITLPKTADWDTWSTIEVPVTLQAGNNQVVFDFEADDTAGINFDHVVFKK
>CP002001.1|AEO04543.1|2523476_2524421_-|internalin
MKKIIGLAFIAFCCILFAPTIKAQADTVPLPAPIIEAFPVEAIAEAIAGELDKDSVNDTITQADLDTMTFIPLPSLGLTGEDLSVLNNEVFTNAIELAIWSNNIGELPDLSDALPALENIEANGANITLFPDANYPNLTNADLSQNNFGFNIPKFVGMEALESINISDAGLSGYVAEDIWMNMPNLDSLLLNENHLISIPEDIFLSEQLSTHSFANQTATYPHTTIKQGENLEVFVPFIYQALDFIAPSKHDLIIIKDNGRTLYEPPYPTYDGSYMYKIETAGLQPGEHLLEISLGYNSGEYTGWYDFPVTITE
>CP002001.1|AEO04542.1|2519529_2523462_-|glycosyl-hydrolase,-family-31
MKKGMKQVCVSLAVVPLVWLNLGITQPLQVEVKAEETKKKETQKKANTETAKQLSKEEYAKLSAEEGLGNVLEATVTDNVITLKIDNGDEAEDDYLEISPLANNLLKVNLRPRNIENSPSTPMIDPNATFTAIGATIDLESDPMIISTDECTLEIAKEPARMTFKDKNGKTLLSESADGGIFDGGVRFKRGASDHVYGAYGISFSDGDLGMERDNTAADSNKTAQAGQQGNAGGPFMWSTAGYGLLVDSDGGYPYSVSDEEKLEFYYGDTIVEGRRYVKENVEMYLMSGEPEEIMSSYADVTGHTPMMPKWSLGFSNFEWGTNETEFRENINTYRAKGIPIDSFAFDYDWKFYGDPTYGGDYGEFAWNTENFPSAKDTTLKSDMDALGVKMIGITKPRVVTNLEDGTATQQGKDAEANGYWYPGQSAYEDYAFPVTVRSIDPYNADERNWWWSHSEDALDKGIVGWWNDETDKVSSNGADYWFGNFTTGFTSEAMYEGQRDYTNERVWQTGRTFYPGAQRYSTSTWSGDIGVQWKKGEVIDWANGMQEQPSTMLSTINLGQTKWGMDTGGFNANSGQVLNPDPELYSRWMEFSSLVPVFRTHGNQNQQRQPWFYGGTAEEVAKSSMTWRYSMIPYMYAYERQAYDSGVGLVQPLTFDNPTDENVVNLTDEWMFGDGLLAAPVLEEGAGSRDIYLPAGTWIDYNRGDVYEGNQTINYEVNDDDWTDVPMFVKQGAIMPMQQPQNYVGESAVKTIYLDTFASDKETSFTHYDDDGKSFDYEKDTYLKQKMTTSKTADTSTFTIGAKEGSYKADTENYIVKLHGNAAESVQVNGADSKVYDDLSALENADGSGYAVGSDVYGAVTYVKVPAQADADTVITTSGSASIVQTGTYEMETGSNFADTVADKPVAEKTYVDGYDKDGAGTTIYANVKDSGDYNVDLTYKNASSDNQALSIFVNGEYVKQTTLKPNTDWSVQSEALPLSAGKNSISYKVVTDTGDKADQVSLDKVNIGFTPTVAKVEAEEADLAGTLKVANDHWFYSGEGFVGGFGTAGDEIKFEVDVPADGEYVLNTRTANGTGMPQTLDLYTNGDYNSRVTFPSKGENWNIWSDTEKAVNLKAGTNKITFLRDGETTGNVNIDRILFSAEPINSPVQSEVNLLDNGGFERDAAATTNWVESHPDGQDKAYGVDSGSGVNPPESPAFGKQSAYFYLPGAYKQTLAQQIAVPVNNANYDVEAWVKVSKDDAAKAQMTVNNYDSSGGKTIDLVADDVWHYVTIKDVKVTKGNINTSFQMDSPGGTSIHIDNVRVMPSAE
>CP002001.1|AEO04541.1|2518160_2518580_-|hypothetical-protein
MYRLLSIAFFGIAVICLLFPWMSSGIDAATFELVYEPAYKLIWMQPIIIVGYLGFLCTIFIPKFQRGKNRIVPFIGILILVLGLLNLAVRPLFGFDSFNFSIIDAYVSELVEPAFLIAVSASILSLIMYAIYLKKLENL
>CP002001.1|AEO04540.1|2517415_2517985_-|hypothetical-protein
MRSLRKIVIILIIIGFMYLLIVAAFMFSGSRTKPSENADTVLILGAKVKGNPAVPSLVLQERLDAAVAYLNEYPKAKVIVSGGQGADESATEASVMEEYLVNEGIARKRIETETKSKRTEENIKYSNAKFNLGKTVIVTSDYHMYRALMLAKRQGIDASGLPATSQTFAKYKGMMREVLSITYAWVFDH
>CP002001.1|AEO04539.1|2516474_2517371_-|helix-turn-helix-type-11-domain-containing-protein
MKLERILAILVMILERKVLASELAEKFEVSTRTIYRDMDTLLYAGFPVVALPGKNGGFTMLDTYKLATFTFSEAEKQILLEALEARSEFMLNDSQEILREKITLLQTEKPTSKHIFFDSATQHRQQIEAEVKRKIAYIQKAFTTNKQLKITYIAMSGAETTREISPQKLNLMDGSWYLEAYCHKRAAIRHFKLTRITSLKEIDKAIMEVEEKEYQPAEMKRIVLEFPKNQLGKLLDYFLQEEMETGDDYVRVSFFYDLERNIIPFLLMFGSAVKILEPASLQKDYKSEVEKLYFNLNC
>CP002001.1|AEO04549.1|2533111_2533345_-|preprotein-translocase-SecG-subunit
MSTVLTVLLIIVSVLLITVIILQPGKSAGLSGAISGGAEQLFGKQKARGLELILHRTTIVLSVVFFAILIALAYFVQ
>CP002001.1|AEO04550.1|2533444_2534188_-|carboxylesterase
MSADRSFTLKAGNRAVLLLHGFAGTTEDVRELGEILAENGYTVHAPNFRGHGDEPAIFLKTTPEMWYEDAVAGYRQLEKDGYDEIAIVGVAMGGVFALKMAESFSPKAIVPLCANVNRKMRYIPIENYLTKQLKKQGIVEQEADQMLKNYLPEIDVMTEARATFYKNVARDIEKIHVPTMIGQGCQDEEIDADNANYIFKHIHTNDKQLCFYAGSGHDIVNDCEKDILEEDLIYFLDDLVWLEEKVV
>CP002001.1|AEO04551.1|2534370_2535090_-|hypothetical-protein
MIAEINGINLFYQIIGKGEPILLIHGNGQNHRSLKRMIDDLSTNHQVIAVDSRAHGKSEAGNTPLDFEVMALDMLSLLDYLKIDKYKVIGYSDGGIVALVMGKMQPNRQIASVVIGTNYHVNQIRFLPDLFCRVAYGAAFLLAPFSRFFERMKRQLALTIYHPHMSEADLQKISAPLLAVVGEYDLISSKDTKKMVHSVQHGEMVIVRNGLHYLPRQKPKQLLQLIHSFFSNLSAEIHK
>CP002001.1|AEO04552.1|2535222_2535390_-|hypothetical-protein
MKVKNSQASKVLETPKIKDAVVHEKSHPLAEKHSVQKKIINADMPQQQFHRRLMK
>CP002001.1|AEO04553.1|2535498_2536791_-|phosphopyruvate-hydratase
MSIITEVYAREVLDSRGNPTVEVEVYTEAGAFGRALVPSGASTGEYEAVELRDGDKARYLGKGVLKAVENVNDIIADKIIGFDVTDQIGIDKAMIELDGTPNKGKLGANAILGVSLAAARAAADELGVHLYEYLGGVNGKVLPVPMMNILNGGEHADNNVDVQEFMVMPVGAPNFKEALRMGAEILHALKAVLKGKGLNTGVGDEGGFAPNLKSNEEALETIMQAIKDAGYKPGEEVKLAMDAASSEFYNRETGKYELKGEGVTRTSEEMVTWYEEMITKYPIISIEDGLDENDWDGFKLLTERIGDRVQLVGDDLFVTNTTKLKEGIEKGIANSILIKVNQIGTLTETLDAIEMAKRAGYTAVISHRSGETEDSTIADIAVATNAGQIKTGAPTRTDRVAKYNQLLRIEDNLADLAEYHGNDTFYNLKK
>CP002001.1|AEO04554.1|2536926_2538459_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MSKSPVAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGELKAAGLDVGLPEGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLEKAISDLNYGAIATVSGRFYAMDRDKRWERVEKAYKAIVSAEGEKFEDPIELVKASYANDKNDEFVVPAIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEWDHFDRGADHPKNIKFVTMTLYNPSVDAEVAFKPIEMKNVIGEVLSNEGLAQLRIAETEKYPHVTFFMNGGRNEEFPGESRILINSPKVETYDLQPEMSAYEVTDALVEDIKNDKHDAIILNFANPDMVGHSGMLEPTIKAIEAVDENLGRVVDLILEKGGSAIIFADHGNSETMSTPEGKPHTAHTTVPVPVIVTKKGVTLREGGRLADVAPTMLDLLGVKKPAEMTGESLIQK
>CP002001.1|AEO04555.1|2538460_2539228_-|triosephosphate-isomerase
MFIQMRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTNLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
>CP002001.1|AEO04556.1|2539261_2540452_-|phosphoglycerate-kinase
MAKKVVTDLDLKDKKVLVRVDFNVPMKDGKITNDNRIVAALPTIEYILEQNGKAILFSHLGKVKTEEDKEGKSLRPVAARLSELLGKEVKFVPTTRGPELEAAIAELKDGEVLLFENTRFEDIDGKKESKNDPELGKYWASLGDVFVNDAFGTAHRAHASNVGIASNLESAAGFLMEKEIKFIGGVVDNPARPLVAILGGAKVSDKIGVIENLLTKADKVLVGGGMTFTFMAAQGQEIGKSLLEADKVELAKGLLEKAGDKLVLPVDAVVSKEFSNDAPFHTVSADSIPADEMGLDIGQATIDLFTKELQGAKTVVWNGPMGVFELSNFAKGTIGVCEAIANLTDATTIIGGGDSAAAAMDLGFADKFTHISTGGGASLEYLEGKELPGVASISDK
>CP002001.1|AEO04557.1|2540586_2541597_-|glyceraldehyde-3-phosphate-dehydrogenase-type-I
MTVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQGRFDGEVEVHDGFFKVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTAQDKAELHIKAGAKKVVISAPATGDMKTIVYNVNHETLDGTETVISGASCTTNCLAPMAKVLEDKFGVVEGLMTTIHAYTGDQNTLDAPHPKGDFRRARAAAENIIPNTTGAAKAIGEVLPTLKGKLDGAAQRVPVPTGSLTELVTVLDKKVTVDEVNAAMETASDSETFGYTSDQVVSSDIKGMTFGSLFDETQTKVLTVGDQQLVKTVAWYDNEMSYTAQLVRTLEYFAKIAK
>CP002001.1|AEO04558.1|2541628_2542675_-|transcriptional-regulator
MSDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGMLGMSERVLRGEVEFLKAQGLVEIASSGMTVTKEGLVVFRDLESVMNQLSGLHSMEEQLAKKLQIKKCLVVQGDSDDTPWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEMMTTDFAKGRELLFVPGRGGIGEDLDNQANTICDKMATKTNTKHRVLYVPEQLGEEAYRSLLKEPAIQEGLRLVQSANAIILGIGDALAMAKRRHTGEDVLGKIIHRKAVGEAFGYYFDEQGEVVHKVPTFGLQFEDLAQIPHIIAVAGGTSKAKAIKSYMKSAPKNTILITDEGAAKSLLKGSNTLLK

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Crispr_ID: CP002001_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP002001_5

2732100-2733388

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRT
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	PILER-CR

19 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of CP002001_5

>merge|CP002001|5|2732100-2733388|CRISPRCasFinder,CRT,PILER-CR
TGTGTGTTGGTGTTCAGAATAATGTAGCTCTAAAACCCCTGTTAGTCATGGGGGGAAGAATATTCGTTTTGGTAGCATTCGAAATAACATAGCTCTAAAACCGAACGGCAGAGGAACAGTATTATGCGACGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGGCATTCTTGCTCTTGATCTTGACCTTGAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTAACTATCCATCTTGCTATCTGTATATGCTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTCTAACAATAAATGAATACATCAAAAAGAGATTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAAGTGCACGCAAAGGAAGGCACAACAGTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTGGCGTGTTCAAAAAATGAAAAGTGCCTTGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTAGTATCTAATTCGTGTTAATATTTTTTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACGACGCCATCAACATGTGTTTGCGGATAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTAATAAATCCATTCTGGTTCATCATCAAAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGACATGGTTTTCTTATCTGCAACTTGCTTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACTCGGTCATTTAAAATATCAAGGCATAGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGAACAACAGTTAACAGTGTTTATAACAACAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCTGTACTCATTAATTAATTCTTGCATTCTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCAACATAATGCCTAGGGTTCCAAACGTTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCTGGGAAAGACTCTTCGTTCACTTCGTCTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTGTACATCCAATTTGTAGCTTGATAGATGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACAACAGTGTATCGTTCATCAGAAACGGGTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAAAAGTATCTTGTGAAAGCGAAAGAACCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>CP002001|5|4|2732100-2733388|CRISPRCasFinder
TGTGTGTTGGTGTTCAGAATAATGTAGCTCTAAAAC	CCCTGTTAGTCATGGGGGGAAGAATATTC
GTTTTGGTAGCATTCGAAATAACATAGCTCTAAAAC	CGAACGGCAGAGGAACAGTATTATGCGACG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGCATTCTTGCTCTTGATCTTGACCTTGAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAACTATCCATCTTGCTATCTGTATATGCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCTAACAATAAATGAATACATCAAAAAGA
GATTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGTGCACGCAAAGGAAGGCACAACAGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGGCGTGTTCAAAAAATGAAAAGTGCCTTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTAGTATCTAATTCGTGTTAATATTTTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACGACGCCATCAACATGTGTTTGCGGATAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAATAAATCCATTCTGGTTCATCATCAAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GACATGGTTTTCTTATCTGCAACTTGCTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTCGGTCATTTAAAATATCAAGGCATAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAACAACAGTTAACAGTGTTTATAACAACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTGTACTCATTAATTAATTCTTGCATTCTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCAACATAATGCCTAGGGTTCCAAACGTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTGGGAAAGACTCTTCGTTCACTTCGTCTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTGTACATCCAATTTGTAGCTTGATAGATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACAACAGTGTATCGTTCATCAGAAACGGGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAAAGTATCTTGTGAAAGCGAAAGAACCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>CP002001|5|4|2732100-2733388|CRT
TGTGTGTTGGTGTTCAGAATAATGTAGCTCTAAAAC	CCCTGTTAGTCATGGGGGGAAGAATATTC
GTTTTGGTAGCATTCGAAATAACATAGCTCTAAAAC	CGAACGGCAGAGGAACAGTATTATGCGACG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGCATTCTTGCTCTTGATCTTGACCTTGAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAACTATCCATCTTGCTATCTGTATATGCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCTAACAATAAATGAATACATCAAAAAGA
GATTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGTGCACGCAAAGGAAGGCACAACAGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGGCGTGTTCAAAAAATGAAAAGTGCCTTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTAGTATCTAATTCGTGTTAATATTTTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACGACGCCATCAACATGTGTTTGCGGATAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAATAAATCCATTCTGGTTCATCATCAAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GACATGGTTTTCTTATCTGCAACTTGCTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTCGGTCATTTAAAATATCAAGGCATAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAACAACAGTTAACAGTGTTTATAACAACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTGTACTCATTAATTAATTCTTGCATTCTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCAACATAATGCCTAGGGTTCCAAACGTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTGGGAAAGACTCTTCGTTCACTTCGTCTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTGTACATCCAATTTGTAGCTTGATAGATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACAACAGTGTATCGTTCATCAGAAACGGGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAAAGTATCTTGTGAAAGCGAAAGAACCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>CP002001|5|3|2732165-2733388|PILER-CR
GTTTTGGTAGCATTCGAAATAACATAGCTCTAAAAC	CGAACGGCAGAGGAACAGTATTATGCGACG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGCATTCTTGCTCTTGATCTTGACCTTGAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAACTATCCATCTTGCTATCTGTATATGCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCTAACAATAAATGAATACATCAAAAAGA
GATTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGTGCACGCAAAGGAAGGCACAACAGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGGCGTGTTCAAAAAATGAAAAGTGCCTTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTAGTATCTAATTCGTGTTAATATTTTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACGACGCCATCAACATGTGTTTGCGGATAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAATAAATCCATTCTGGTTCATCATCAAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GACATGGTTTTCTTATCTGCAACTTGCTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTCGGTCATTTAAAATATCAAGGCATAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAACAACAGTTAACAGTGTTTATAACAACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTGTACTCATTAATTAATTCTTGCATTCTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCAACATAATGCCTAGGGTTCCAAACGTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTGGGAAAGACTCTTCGTTCACTTCGTCTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTGTACATCCAATTTGTAGCTTGATAGATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACAACAGTGTATCGTTCATCAGAAACGGGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAAAGTATCTTGTGAAAGCGAAAGAACCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP002001.1\|AEO04756.1\|2735373_2739378_-\|CRISPR-associated-protein	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
CP002001.1\|AEO04745.1\|2718604_2719312_+\|hypothetical-protein	unknown	unknown	unknown
CP002001.1\|AEO04752.1\|2731211_2731574_-\|lipoprotein	unknown	unknown	unknown
CP002001.1\|AEO04749.1\|2728226_2729753_+\|N-acetylmuramoyl-L-alanine-amidase,-family-4	unknown	unknown	gnl\|CDD\|224619
CP002001.1\|AEO04750.1\|2729794_2730646_-\|morphine-6-dehydrogenase	unknown	unknown	gnl\|CDD\|381359
CP002001.1\|AEO04743.1\|2717726_2718149_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP002001.1\|AEO04762.1\|2743187_2744054_-\|cobalt-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237454
CP002001.1\|AEO04760.1\|2741635_2742382_-\|tRNA-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|234577
CP002001.1\|AEO04758.1\|2740589_2740982_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
CP002001.1\|AEO04751.1\|2730667_2731090_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
CP002001.1\|AEO04759.1\|2741003_2741441_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
CP002001.1\|AEO04747.1\|2720020_2721202_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271189
CP002001.1\|AEO04753.1\|2733516_2734179_-\|csn2-family-CRISPR-associated-protein	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
CP002001.1\|AEO04746.1\|2719370_2719976_+\|gp15	unknown	unknown	unknown
CP002001.1\|AEO04757.1\|2739887_2740367_-\|hypothetical-protein	unknown	unknown	unknown
CP002001.1\|AEO04754.1\|2734168_2734510_-\|CRISPR-associated-protein-cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
CP002001.1\|AEO04755.1\|2734506_2735373_-\|CRISPR-associated-protein-cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
CP002001.1\|AEO04744.1\|2718164_2718590_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225412
CP002001.1\|AEO04748.1\|2726930_2727959_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
CP002001.1\|AEO04761.1\|2742387_2743185_-\|cobalt-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223692

Protein	Function_ID	Function_description	E-value
CP002001.1\|AEO04744.1\|2718164_2718590_+\|hypothetical-protein	gnl\|CDD\|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	6.38766e-17
CP002001.1\|AEO04749.1\|2728226_2729753_+\|N-acetylmuramoyl-L-alanine-amidase,-family-4	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	5.31629e-69
CP002001.1\|AEO04753.1\|2733516_2734179_-\|csn2-family-CRISPR-associated-protein	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.33437e-112
CP002001.1\|AEO04743.1\|2717726_2718149_+\|transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.10783e-14
CP002001.1\|AEO04762.1\|2743187_2744054_-\|cobalt-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237454	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
CP002001.1\|AEO04760.1\|2741635_2742382_-\|tRNA-pseudouridine-synthase-A	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	2.82266e-128
CP002001.1\|AEO04758.1\|2740589_2740982_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	4.44953e-85
CP002001.1\|AEO04751.1\|2730667_2731090_-\|transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.26033e-42
CP002001.1\|AEO04759.1\|2741003_2741441_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.08607e-102
CP002001.1\|AEO04747.1\|2720020_2721202_+\|hypothetical-protein	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.46409e-40
CP002001.1\|AEO04750.1\|2729794_2730646_-\|morphine-6-dehydrogenase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	5.13526e-171
CP002001.1\|AEO04754.1\|2734168_2734510_-\|CRISPR-associated-protein-cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.60762e-45
CP002001.1\|AEO04755.1\|2734506_2735373_-\|CRISPR-associated-protein-cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.51602e-136
CP002001.1\|AEO04756.1\|2735373_2739378_-\|CRISPR-associated-protein	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
CP002001.1\|AEO04748.1\|2726930_2727959_-\|ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	4.13281e-115
CP002001.1\|AEO04761.1\|2742387_2743185_-\|cobalt-ABC-transporter-permease	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	7.70432e-53

>CP002001.1|AEO04752.1|2731211_2731574_-|lipoprotein
MKKTSIIFIFCALLLTACSTTTKEIPRQTTEATGTIEQVETESILIKNFKIKNDNNTPELSVRFHISEKYHDETGNKIKRTELNKNDNIKIILTKDFQIQETSPAQIDPKYVQKIILLNK
>CP002001.1|AEO04751.1|2730667_2731090_-|transcriptional-regulator
MNIKQAADMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDLNWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKKVRELLVYKIDSYDSHIAQFKAGELNADNVEKLWERNKF
>CP002001.1|AEO04750.1|2729794_2730646_-|morphine-6-dehydrogenase
MKTVKLNNGVEVPILGFGTYQITDAAEAEQAVKDAIKTGYRHIDTAQSYMNEEAVGRGIAASGVDRKELFITTKIWVENVSYKGVMSSFDRSLKRLGLDYVDLLLIHQPFNDVYGAWIAMEELQASGKIRAIGVSNFSPDRVIDLAAFNEVTPQVNQIEVNPFQQQTANLAILRKEGVAIEAWAPFAEGKNDVFNNPVLTKIGAKYGKSAAQVILRWLVEQDIIVLAKSVKPERMAQNLAIFDFELTEADKEEIAGLNQGESQFFSHADPEMVKWMASRKLNV
>CP002001.1|AEO04749.1|2728226_2729753_+|N-acetylmuramoyl-L-alanine-amidase,-family-4
MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTAQVNLTTSQQAFIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSNNLFGIKGTYKGKSVSMGTMEASGSTTANFRVYPSWKESIEDHTALITENARYQDAVGETNYRKALQAIKDGGYATDPDYVSKLVAIIERYNLDKYDVIYDKIDSNQSLAAIGTVAENKKQEVIWSAPYNTEDANKIGTLENYSGRNLEISWEAKTEKGLWYFIRENNKDIGWVNSNALKINYHQKEDENVHLTKYVDDLSAHVYRLPSPEKQFDNGTIAKYDRKALQVDKKITRGGYAWFRISEGEKVIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATDNVWTAPFNTKNAEKLAPLADYNNEKLEIVTRAKAGNTLWYQFKVDGKLVGWASEKDLNVFYTPAKEEPVKQVAYVKDPTAKLYNKPVESTSTNPKAVGFYYGKLLAVDKTATILGEDWLHLKDSQNSLGWIKAIDINS
>CP002001.1|AEO04748.1|2726930_2727959_-|ATP-binding-protein
MLNEQQITRLLYRLQDPVLEASLEETEGVLEVQVLEETANIKIALADPAVETDHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSEASETKFLAIASGKGGVGKSTVSANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPHKENGQIIPVETHGIQMISMDFFVEQGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGTGDVALDIHTLIPKCNELIVTTPHYAAASVASRAGYMAAKNNHKIIGVIENMSYLTLADGQVLKVFGQGGGEKVAADLETQLLIQLPIEQPEPNGNGYVSALFNSSSTSGKAYKTLAEKIIPCLS
>CP002001.1|AEO04747.1|2720020_2721202_+|hypothetical-protein
MLRRYDMASYVNLGNNKYELRVSKGYDARGKQIRKTKNVTVKTVKALKLELSNFEAYVYSSDYTEIKDMRFIDFVEKWRLNYAKRELKGNTIDKYNLFLENWIIPYFERKKISKITTMQLLDYFHEVQKKGVGPSALEGHHRVIRSLFKYATLWGITETDVSLSVKKPTYKVPEKNIYNRREIEVLIDRIKILQKYQQVMIKLALYCGLRRGEVIGLTTKDMNYNKNTINVYRAVIKSASEGIKLDETKNKRKRIVPAPAGLMQEIKELAKEKQKNKDKLGLLWKGTKDLDGKTVVLIFSHDDGTPFTPASVTRMFNRFLEKEENNDLTKISFHDLRHSAASFLLEQGINVKVIQNILGHSDIKVTLNTYAHITEDGYSEAAKTFDNFYKSSK
>CP002001.1|AEO04746.1|2719370_2719976_+|gp15
MSKYRHLLKKWWLWVIFLLVIIGIVSLFWYTQVYSSEWGKGLSKEDKEVLEKANKSTNEFNKFAKEANSGIKSFNNDATINPQIVINPFTKMGDNITERSDEFIKDYDEYSISIQNILKDDYNNIKKLRDDVVAQQEEIKSIYSNAHNYNRELSTVESRIVENIYQEMHKEQKESLGLKNHEFKKNAEFSDKAIKLMPGVD
>CP002001.1|AEO04745.1|2718604_2719312_+|hypothetical-protein
MKKWIVLCFILLLSLVLYACGEPELDISDSTGKGYYLNQTGKTSDNAKITLKDENGDSKKIETDNNSFTMLFPRLNSKATYTVLAEKDEKTSETEIVVPKQKKLVSYEDLQGQFNYIFETEDDLSISLPESVTSDAEVTNGFKIMSDGNNVMSLLLTYSSNDKIGITDYNDFTYSIAAIMMSLDSENGLDKVLNALNNSMDDQKDTKVSVNEITYQFSTINTSSTNLTTLEIYPS
>CP002001.1|AEO04744.1|2718164_2718590_+|hypothetical-protein
MEMSEFIQQQIQKLVNIHETRNPFLIAKEKDILILKEDLGEVYGYYNKINRIKMIHLNNLFSDERQLFTCAHELCHALIHQDENTPQLSKQTIVSEWKVEKEANYFATQLLIDGSHLEHYIDTTDKIINFYGLPEEMKKYI
>CP002001.1|AEO04743.1|2717726_2718149_+|transcriptional-regulator
MFGDRLRSLRENKNLTQQKVADDLNIKRENLSNYERNKREPDYEMLKKLAEYYGVSRSYILGETDKKQYWELDDKDERSIQKDLQKMIDDLSNSDAFAYSKEDGEMDENTKKLLIMSLENSLRIAKEESKKRFTPKKYRK
>CP002001.1|AEO04753.1|2733516_2734179_-|csn2-family-CRISPR-associated-protein
MNFNFKLLDDPIQIEDSTIFVIEDVRVFANVTRFFYQYEETEELTIFGATHQPLKSSELMLITDVLGHDINSAATLKLIYADLEQQLNEKPEVKSMIDKLTATISELIGYELLEHELDLEEDEIMVIELFKALGIKIETKSDTVFEKLIEIVQVYKYLSKKKLLVLINVCSYLTEEELLELRRYISLYQVKVLFIEPRKIKGSPQVTLDPDYFLHVENSV
>CP002001.1|AEO04754.1|2734168_2734510_-|CRISPR-associated-protein-cas2
MSYRYMRMLLMFDMPTDTAKERKAYRQFRRFILSEGFIMHQYSVYSKILLNGTASKAMLARLKQQNPKKGLITLLTVTEKQFARMVYLSGEQNKSIGNSDARLVFLGDDADEF
>CP002001.1|AEO04755.1|2734506_2735373_-|CRISPR-associated-protein-cas1
MGWRTVVVNSHSKLSYKNQHLVFKSAYQQEMIHLSEIDVLILETTDITLTTMLINCLVAENILILFCDDKRLPIGKVLPFYGRHDSSLQLTKQLEWEAELKAAVWTEIISQKILNQSTYLSMLNYDEKASSLINLHETLAVFDPTNREGHAARIYFNQLFGNDFTREQENDINSGLNYGYTLLLSVFARELVKSGCMTQFGLKHANQFNDFNLASDLMEPFRPLVDQIVYEKRNEDFQVIKRSLFELFTKQFDYNDQHMFLTNIASDYTKKIVKVLNEEREGVPEFRI
>CP002001.1|AEO04756.1|2735373_2739378_-|CRISPR-associated-protein
MKNPYTIGLDIGTNSVGWAVLTNQYDLVKRKMKVAGNSDKKQIKKNFWGVRLFDDGQTAVDRRMNRTARRRIERRRNRISYLQEIFAVEMANIDANFFCRLNDSFYVDSEKRNSRHPFFATIEEEVAYHDNYRTIYHLREKLVNSSEKADLRLVYLALAHIIKYRGNFLIEGALDTKNTSVDEVYKQFIETYNQVFMSNIEEGALAKVEENIEVANILAGKFTRREKFERILQLYPGEKSTGMFAQFISLIVGSKGNFQKVFDLIEKTDIECAKDSYEEDLETLLAIIGDEYAELFVAAKNTYNAVVLSSIITVTDTETNAKLSASMIERFDAHEKDLVELKAFIKLNLPKQYEEIFSNAAIDGYAGYIDGKTKQVDFYKYLKTILENIEGSDYFIAKIEEENFLRKQRTFDNGAIPHQLHLEELEAIIHQQAKYYPFLKEDYDKIKSLVTFRIPYFVGPLANGQSEFAWLTRKADGEIRPWNIEEKVDFGKSAVDFIEKMTNKDTYLPKENVLPKHSLCYQKYMVYNELTKIRYIDDQGKTNYFSGREKQQVFNDLFKQKRKVKKKDLELFLRNINHIESPTIEGLEDSFNASYATYHDLLKVGMKQEILDNPLNTEMLEDIVKILTVFEDKPMIKEQLQQFSDVLDGGVLKKLERRHYTGWGRLSAKLLVGIREKQSHLTILDYLMNDDGLNRNLMQLINDSNLSFKSIIEKEQVSTTDKDLQSIVAELAGSPAIKKGILQSLKIVDELVSIMGYPPQTIVVEMARENQTTGKGKNNSKPRYKSLEKAIKEFGSQILKEHPTDNQELKNNRLYLYYLQNGKDMYTGQELDIHNLSNYDIDHIVPQSFITDNSIDNLVLTSSAGNREKGGDVPPLEIVRKRKVFWEKLYQGNLMSKRKFDYLTKAERGGLTEADKARFIHRQLVETRQITKNVANILYQRFNKETDNHGNTMEQVRIVTLKSALVSQFRKQFQLYKVREVNGYHHAHDAYLNGVVANTLLKVYPQLEPEFVYGEYHQFDWFKANKATAKKQFYTNIMLFFAQKERIIDENGEILWDKKYLETIKKVLDYRQMNIVKKTEIQKGEFSKATIKPKGNSSKLIPRKENWDPMKYGGLDSPNMAYAVIIEHAKGKKKIVIEKKLIQINIMERKMFEKDEEAFLEEKGYRHPKVLTKLPKYTLYECEKGRRRMLASANEAQKGNQLVLSNHLVSLLYHAKNCEASDGKSLKYIEAHRETFSELLAQVSEFATRYTLADANLSKINNLFEQNKEGDIKAIAQSFVDLMAFNAMGAPASFKFFEATIDRKRYTNLKELLSSTIIYQSITGLYESRKRLDD
>CP002001.1|AEO04757.1|2739887_2740367_-|hypothetical-protein
MKGLIINKMHSGYFTNMSEVFNLLPEEELNCMWLVSSYECNIYPFEQIPFEEEYVWMKGTELKEILNQEEVMFIWGNFTSYPSNTKLKEILKYPIPFADGNSDLWKKDVHLSNPLSNTELISWDSSIFLALSKNTNLIEGLKDNYPDSEDLSTYNSDID
>CP002001.1|AEO04758.1|2740589_2740982_-|30S-ribosomal-protein-S9
MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDSRMKERKKPGLKGARRAPQFSKR
>CP002001.1|AEO04759.1|2741003_2741441_-|50S-ribosomal-protein-L13
MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQQPEVYELRG
>CP002001.1|AEO04760.1|2741635_2742382_-|tRNA-pseudouridine-synthase-A
MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRVTASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQGLYLWRVDYE
>CP002001.1|AEO04761.1|2742387_2743185_-|cobalt-ABC-transporter-permease
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFVYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLANGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRILRWRFADTFLLISLAVLSGLLFWLRS
>CP002001.1|AEO04762.1|2743187_2744054_-|cobalt-ABC-transporter-ATP-binding-protein
MEIKLEQLGYCYQKNSPFEKRALLDVNVSFDSGSYSAIIGHTGSGKSTLLQHLNALLMPTEGKITVGDREIVAGVKQKKLRDLRKKVGIVFQFPEAQLFEETVEKDICFGPMNFGVSEEDAKLRAKKVIYEVGLTEEILSRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPHGREEIMEMFYNLHKQKGLTTVLVTHSMEDAARYAEKIVLMKAGTVLQIGTPREIFAKPDELVDLGLSVPDVVRFQGLFERKFDVKLTKTCLTIDELTSEMAPYLAKGGA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP002001_3	3.25\|570449\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570449-570484	36	CP002001.1	2376518-2376553	0	1.0
CP002001_5	5.4\|2732333\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732333-2732362	30	CP002001.1	2365027-2365056	0	1.0
CP002001_3	3.9\|569414\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569414-569449	36	CP002001.1	2364962-2364997	1	0.972
CP002001_5	5.18\|2733257\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2733257-2733286	30	CP002001.1	2367051-2367080	1	0.967

1. spacer 3.25|570449|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to position: 2376518-2376553, mismatch: 0, identity: 1.0

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaaccacctcgatttc	Protospacer
************************************

2. spacer 5.4|2732333|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to position: 2365027-2365056, mismatch: 0, identity: 1.0

taactatccatcttgctatctgtatatgct	CRISPR spacer
taactatccatcttgctatctgtatatgct	Protospacer
******************************

3. spacer 3.9|569414|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to position: 2364962-2364997, mismatch: 1, identity: 0.972

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtagtacacctcaat	Protospacer
************************.***********

4. spacer 5.18|2733257|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to position: 2367051-2367080, mismatch: 1, identity: 0.967

acaacagtgtatcgttcatcagaaacgggt	CRISPR spacer
acaacagtgtatcgttcatctgaaacgggt	Protospacer
******************** *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP002001_3	3.9\|569414\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569414-569449	36	NC_003216	Listeria phage A118, complete genome	18563-18598	0	1.0
CP002001_3	3.9\|569414\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569414-569449	36	AJ242593	Bacteriophage A118 complete genome	18563-18598	0	1.0
CP002001_3	3.13\|569671\|34\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569671-569704	34	NC_003216	Listeria phage A118, complete genome	19172-19205	0	1.0
CP002001_3	3.13\|569671\|34\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569671-569704	34	AJ242593	Bacteriophage A118 complete genome	19172-19205	0	1.0
CP002001_3	3.25\|570449\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570449-570484	36	KP399678	Listeria phage vB_LmoS_293, complete genome	6980-7015	0	1.0
CP002001_5	5.4\|2732333\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732333-2732362	30	NC_003216	Listeria phage A118, complete genome	18504-18533	0	1.0
CP002001_5	5.4\|2732333\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732333-2732362	30	AJ242593	Bacteriophage A118 complete genome	18504-18533	0	1.0
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	MN172529	Listeria phage LP-039, complete genome	125154-125183	0	1.0
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	NC_025440	Listeria phage WIL-1, complete genome	41574-41603	0	1.0
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	NC_047872	Listeria phage LMTA-94, complete genome	7851-7880	0	1.0
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	KJ591604	Listeria phage LMTA-148, complete genome	2823-2852	0	1.0
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	KJ591605	Listeria phage LMTA-57, complete genome	18226-18255	0	1.0
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	KJ094033	Listeria phage LP-048, complete genome	127611-127640	0	1.0
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	MN128594	Listeria phage LP-066, complete genome	126014-126043	0	1.0
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	NC_042048	Listeria phage LMTA-34, complete genome	3149-3178	0	1.0
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	KJ094030	Listeria phage LP-083-2, complete genome	131180-131209	0	1.0
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	NC_024360	Listeria phage LMSP-25, complete genome	3149-3178	0	1.0
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	125046-125075	0	1.0
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	KJ535721	Listeria phage List-36, complete genome	2656-2685	0	1.0
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	KJ094031	Listeria phage LP-124, complete genome	93295-93324	0	1.0
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	MT438761	Listeria virus P61, complete genome	6334-6363	0	1.0
CP002001_5	5.13\|2732927\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732927-2732956	30	KP399678	Listeria phage vB_LmoS_293, complete genome	3977-4006	0	1.0
CP002001_5	5.14\|2732993\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732993-2733022	30	MH341452	Listeria phage PSU-VKH-LP040, complete genome	38055-38084	0	1.0
CP002001_5	5.14\|2732993\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732993-2733022	30	MH341451	Listeria phage PSU-VKH-LP019, complete genome	37522-37551	0	1.0
CP002001_5	5.14\|2732993\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732993-2733022	30	KP399677	Listeria phage vB_LmoS_188, complete genome	37313-37342	0	1.0
CP002001_5	5.17\|2733191\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2733191-2733220	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	5858-5887	0	1.0
CP002001_3	3.3\|569024\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569024-569059	36	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	60125-60160	1	0.972
CP002001_3	3.3\|569024\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569024-569059	36	NC_009812	Listeria phage B025, complete genome	27503-27538	1	0.972
CP002001_3	3.25\|570449\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570449-570484	36	NC_003216	Listeria phage A118, complete genome	6982-7017	1	0.972
CP002001_3	3.25\|570449\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570449-570484	36	AJ242593	Bacteriophage A118 complete genome	6982-7017	1	0.972
CP002001_3	3.25\|570449\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570449-570484	36	MH341452	Listeria phage PSU-VKH-LP040, complete genome	6993-7028	1	0.972
CP002001_3	3.27\|570577\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570577-570612	36	NC_021539	Listeria phage LP-030-2, complete genome	14044-14079	1	0.972
CP002001_3	3.27\|570577\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570577-570612	36	AJ312240	Bacteriophage PSA complete genome	14022-14057	1	0.972
CP002001_3	3.28\|570642\|37\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	KY705255	Streptococcus phage P0095, complete genome	33666-33702	1	0.973
CP002001_3	3.28\|570642\|37\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	KY705251	Streptococcus phage P0091, complete genome	32778-32814	1	0.973
CP002001_3	3.28\|570642\|37\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	KX879643	Streptococcus phage CHPC1151, complete genome	31697-31733	1	0.973
CP002001_3	3.28\|570642\|37\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	MK202161	Streptococcus phage CHPC1282, complete genome	32484-32520	1	0.973
CP002001_3	3.28\|570642\|37\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	KY705252	Streptococcus phage P0092, complete genome	31845-31881	1	0.973
CP002001_3	3.28\|570642\|37\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	MH937506	Streptococcus phage CHPC1148, complete genome	35552-35588	1	0.973
CP002001_3	3.28\|570642\|37\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	KY705253	Streptococcus phage P0093, complete genome	32631-32667	1	0.973
CP002001_3	3.28\|570642\|37\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	KY705254	Streptococcus phage P0094, complete genome	31034-31070	1	0.973
CP002001_5	5.7\|2732531\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732531-2732560	30	KJ094028	Listeria phage LP-083-1 contig 2, partial genome	19214-19243	1	0.967
CP002001_5	5.7\|2732531\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732531-2732560	30	DQ003641	Listeria phage P35, complete genome	35344-35373	1	0.967
CP002001_5	5.8\|2732597\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732597-2732626	30	MH341452	Listeria phage PSU-VKH-LP040, complete genome	25335-25364	1	0.967
CP002001_5	5.8\|2732597\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732597-2732626	30	DQ003637	Listeria phage A500, complete genome	26869-26898	1	0.967
CP002001_5	5.10\|2732729\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732729-2732758	30	KJ094023	Listeria phage LP-101, complete genome	13135-13164	1	0.967
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	126453-126482	1	0.967
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	MT178766	Listeria virus P100plus, complete genome	91489-91518	1	0.967
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	DQ003638	Listeria phage A511, complete genome	125675-125704	1	0.967
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	MT178767	Listeria virus P200, complete genome	91490-91519	1	0.967
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	DQ004855	Listeria bacteriophage P100, complete genome	91484-91513	1	0.967
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	10033-10062	1	0.967
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	KJ668717	Listeria phage LMTA-34 hypothetical proteins, transposase domain-containing protein, and hypothetical proteins genes, complete cds	3343-3372	1	0.967
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	NC_041862	Listeria phage LP-064, complete genome	134499-134528	1	0.967
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	JX126918	Listeria phage LP-125, complete genome	134501-134530	1	0.967
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	7289-7318	1	0.967
CP002001_5	5.14\|2732993\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732993-2733022	30	KP399678	Listeria phage vB_LmoS_293, complete genome	39597-39626	1	0.967
CP002001_5	5.17\|2733191\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2733191-2733220	30	KJ668718	Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds	2013-2042	1	0.967
CP002001_5	5.18\|2733257\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2733257-2733286	30	NC_003216	Listeria phage A118, complete genome	16480-16509	1	0.967
CP002001_5	5.18\|2733257\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2733257-2733286	30	AJ242593	Bacteriophage A118 complete genome	16480-16509	1	0.967
CP002001_3	3.3\|569024\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569024-569059	36	KJ094023	Listeria phage LP-101, complete genome	27001-27036	2	0.944
CP002001_3	3.8\|569349\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569349-569384	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	26132-26167	2	0.944
CP002001_3	3.14\|569734\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569734-569769	36	KJ094022	Listeria phage LP-030-3, complete genome	38302-38337	2	0.944
CP002001_3	3.16\|569864\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569864-569899	36	KP399678	Listeria phage vB_LmoS_293, complete genome	1049-1084	2	0.944
CP002001_3	3.25\|570449\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570449-570484	36	DQ003637	Listeria phage A500, complete genome	6959-6994	2	0.944
CP002001_3	3.28\|570642\|37\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	MN689509	Lactococcus phage CHPC1175, complete genome	29544-29580	2	0.946
CP002001_3	3.28\|570642\|37\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570642-570678	37	MK448735	Streptococcus phage Javan349, complete genome	11483-11519	2	0.946
CP002001_5	5.10\|2732729\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732729-2732758	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	222662-222691	2	0.933
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	MT438761	Listeria virus P61, complete genome	2356-2385	2	0.933
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	130424-130453	2	0.933
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NC_041862	Listeria phage LP-064, complete genome	3238-3267	2	0.933
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	JX126918	Listeria phage LP-125, complete genome	3238-3267	2	0.933
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	KJ668718	Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds	582-611	2	0.933
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	MT178766	Listeria virus P100plus, complete genome	95444-95473	2	0.933
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NC_025440	Listeria phage WIL-1, complete genome	38923-38952	2	0.933
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NC_047872	Listeria phage LMTA-94, complete genome	3174-3203	2	0.933
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	MT178767	Listeria virus P200, complete genome	95445-95474	2	0.933
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	DQ004855	Listeria bacteriophage P100, complete genome	95437-95466	2	0.933
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	KJ591605	Listeria phage LMTA-57, complete genome	13555-13584	2	0.933
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	MN128594	Listeria phage LP-066, complete genome	130914-130943	2	0.933
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NC_042048	Listeria phage LMTA-34, complete genome	7886-7915	2	0.933
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	KJ094030	Listeria phage LP-083-2, complete genome	305-334	2	0.933
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NC_024360	Listeria phage LMSP-25, complete genome	7886-7915	2	0.933
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	KJ094031	Listeria phage LP-124, complete genome	98190-98219	2	0.933
CP002001_5	5.13\|2732927\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732927-2732956	30	MH341452	Listeria phage PSU-VKH-LP040, complete genome	4024-4053	2	0.933
CP002001_3	3.1\|568894\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	568894-568929	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	228347-228382	3	0.917
CP002001_3	3.15\|569799\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569799-569834	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	41996-42031	3	0.917
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	MN172529	Listeria phage LP-039, complete genome	129216-129245	3	0.9
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	DQ003638	Listeria phage A511, complete genome	128345-128374	3	0.9
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	KJ591604	Listeria phage LMTA-148, complete genome	5611-5640	3	0.9
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	KJ094033	Listeria phage LP-048, complete genome	131673-131702	3	0.9
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	129041-129070	3	0.9
CP002001_3	3.15\|569799\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569799-569834	36	KJ094023	Listeria phage LP-101, complete genome	32760-32795	5	0.861
CP002001_5	5.16\|2733125\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2733125-2733154	30	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	209438-209467	5	0.833
CP002001_5	5.16\|2733125\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2733125-2733154	30	NZ_CP011450	Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence	86777-86806	5	0.833
CP002001_3	3.12\|569608\|34\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569608-569641	34	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1764851-1764884	6	0.824
CP002001_3	3.25\|570449\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570449-570484	36	KJ094022	Listeria phage LP-030-3, complete genome	15373-15408	6	0.833
CP002001_3	3.29\|570708\|35\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570708-570742	35	MN694189	Marine virus AFVG_250M578, complete genome	47879-47913	6	0.829
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NZ_CP039041	Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence	142013-142042	6	0.8
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NZ_LN831788	Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence	3191-3220	6	0.8
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NC_041973	Erwinia phage vB_EamM_RAY, complete genome	97903-97932	6	0.8
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NC_042098	Erwinia phage vB_EamM_Desertfox, complete genome	98325-98354	6	0.8
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	MG655267	Erwinia phage vB_EamM_Bosolaphorus, complete genome	98238-98267	6	0.8
CP002001_5	5.5\|2732399\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732399-2732428	30	CP031025	Lactobacillus phage ViSo-2018b, partial genome	5042-5071	6	0.8
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NZ_CP033143	Vibrio parahaemolyticus strain 160807 plasmid pVPWZ1, complete sequence	25104-25133	6	0.8
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NZ_CP021149	Vibrio campbellii strain LA16-V1 plasmid pLA16-3, complete sequence	52279-52308	6	0.8
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NZ_CP034300	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-1, complete sequence	36024-36053	6	0.8
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NZ_CP034291	Vibrio parahaemolyticus strain 20140722001-1 plasmid pVPCZ2014-1, complete sequence	65169-65198	6	0.8
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NZ_CP034296	Vibrio parahaemolyticus strain 20140829008-1 plasmid pVPGD2014-1, complete sequence	36481-36510	6	0.8
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	AP014859	Vibrio parahaemolyticus plasmid pVP2HP DNA, complete sequence, strain: VPE61	125738-125767	6	0.8
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	AP014861	Vibrio parahaemolyticus plasmid pVPE61b DNA, complete sequence, strain: VPE61	73236-73265	6	0.8
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NZ_CP034287	Vibrio parahaemolyticus strain 20140624012-1 plasmid pVPHB2014-1, complete sequence	12210-12239	6	0.8
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NZ_CP046413	Vibrio parahaemolyticus strain 19-021-D1 plasmid pVp_Kor-D1-1, complete sequence	111674-111703	6	0.8
CP002001_5	5.12\|2732861\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732861-2732890	30	NZ_CP033139	Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence	91576-91605	6	0.8
CP002001_5	5.17\|2733191\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2733191-2733220	30	AP014346	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S38-C5, * SEQUENCING IN PROGRESS *	30872-30901	6	0.8
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NZ_KY290886	Enterococcus faecalis strain Transconjugant T4 plasmid pJH-T4, complete sequence	64389-64418	7	0.767
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NZ_CP027515	Enterococcus faecium strain AUSMDU00004028 plasmid unnamed3, complete sequence	21254-21283	7	0.767
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NZ_CP039048	Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence	113574-113603	7	0.767
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	MT701594	Streptomyces phage Spernnie, complete genome	7197-7226	7	0.767
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	MK433268	Streptomyces phage Popy, complete genome	7002-7031	7	0.767
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	MF467948	Streptomyces phage DrGrey, complete genome	7002-7031	7	0.767
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	MN586054	Streptomyces phage FrodoSwaggins, complete genome	7002-7031	7	0.767
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	MN204504	Streptomyces phage Soshi, complete genome	7002-7031	7	0.767
CP002001_5	5.5\|2732399\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732399-2732428	30	NZ_CP027463	Escherichia coli isolate 07-4299 plasmid unnamed	104966-104995	7	0.767
CP002001_5	5.5\|2732399\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732399-2732428	30	MH356730	Staphylococcus phage VB-SauS-SA2, complete genome	40543-40572	7	0.767
CP002001_5	5.7\|2732531\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732531-2732560	30	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	1489905-1489934	7	0.767
CP002001_5	5.8\|2732597\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732597-2732626	30	NZ_CP028888	Borrelia turcica IST7 plasmid cp33, complete sequence	17581-17610	7	0.767
CP002001_5	5.18\|2733257\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2733257-2733286	30	NZ_KY888886	Acinetobacter pittii strain IHIT24944 plasmid pAP24944-OXA-58, complete sequence	13227-13256	7	0.767
CP002001_5	5.18\|2733257\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2733257-2733286	30	NZ_CP033131	Acinetobacter wuhouensis strain WCHAW010062 plasmid pOXA58_010062, complete sequence	11597-11626	7	0.767
CP002001_5	5.18\|2733257\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2733257-2733286	30	NZ_CP032281	Acinetobacter sp. WCHA55 plasmid p2_010055, complete sequence	5197-5226	7	0.767
CP002001_5	5.19\|2733323\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2733323-2733352	30	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	880388-880417	7	0.767
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	67660-67689	8	0.733
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	GQ919031	Streptomyces phage ZL12, complete genome	40400-40429	8	0.733
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	MN204492	Streptomyces phage GirlPower, complete genome	8525-8554	8	0.733
CP002001_5	5.5\|2732399\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732399-2732428	30	NZ_MF477836	Macrococcus canis strain KM0218 plasmid pKM0218, complete sequence	32562-32591	8	0.733
CP002001_5	5.5\|2732399\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732399-2732428	30	AP014435	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22C-MedDCM-OCT-S41-C155, * SEQUENCING IN PROGRESS *, 2 ordered pieces	10770-10799	8	0.733
CP002001_5	5.5\|2732399\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732399-2732428	30	AP013443	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C22C-MedDCM-OCT-S23-C7	19661-19690	8	0.733
CP002001_5	5.5\|2732399\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732399-2732428	30	AP014428	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S29-C101, * SEQUENCING IN PROGRESS *, 7 ordered pieces	8975-9004	8	0.733
CP002001_5	5.16\|2733125\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2733125-2733154	30	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1345009-1345038	8	0.733
CP002001_3	3.12\|569608\|34\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569608-569641	34	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	39302-39335	9	0.735
CP002001_3	3.17\|569929\|35\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569929-569963	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	491525-491559	9	0.743
CP002001_3	3.29\|570708\|35\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570708-570742	35	MK448625	Streptococcus satellite phage Javan738, complete genome	5960-5994	9	0.743
CP002001_3	3.29\|570708\|35\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570708-570742	35	MK448449	Streptococcus satellite phage Javan356, complete genome	4490-4524	9	0.743
CP002001_3	3.29\|570708\|35\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570708-570742	35	MK448636	Streptococcus satellite phage Javan749, complete genome	6112-6146	9	0.743
CP002001_3	3.29\|570708\|35\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570708-570742	35	NZ_CP045037	Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence	34734-34768	9	0.743
CP002001_3	3.29\|570708\|35\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570708-570742	35	NZ_CP018177	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence	11325-11359	9	0.743
CP002001_3	3.29\|570708\|35\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570708-570742	35	NZ_CP018181	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence	63608-63642	9	0.743
CP002001_5	5.3\|2732267\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732267-2732296	30	NZ_CP039048	Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence	113568-113597	9	0.7
CP002001_5	5.7\|2732531\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732531-2732560	30	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	412741-412770	9	0.7
CP002001_5	5.11\|2732795\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732795-2732824	30	NZ_CP026119	Halobacillus litoralis strain ERB 031 plasmid pLDW-31, complete sequence	93109-93138	9	0.7
CP002001_5	5.17\|2733191\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2733191-2733220	30	NC_007412	Trichormus variabilis ATCC 29413 plasmid C, complete sequence	152644-152673	9	0.7
CP002001_5	5.17\|2733191\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2733191-2733220	30	NZ_CP047244	Trichormus variabilis 0441 plasmid unnamed2, complete sequence	86875-86904	9	0.7
CP002001_3	3.26\|570514\|34\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570514-570547	34	NZ_CP034816	Paracoccus sp. Arc7-R13 plasmid unnamed6, complete sequence	26153-26186	11	0.676

1. spacer 3.9|569414|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

2. spacer 3.9|569414|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

3. spacer 3.13|569671|34|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

4. spacer 3.13|569671|34|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

5. spacer 3.25|570449|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaaccacctcgatttc	Protospacer
************************************

6. spacer 5.4|2732333|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

taactatccatcttgctatctgtatatgct	CRISPR spacer
taactatccatcttgctatctgtatatgct	Protospacer
******************************

7. spacer 5.4|2732333|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

taactatccatcttgctatctgtatatgct	CRISPR spacer
taactatccatcttgctatctgtatatgct	Protospacer
******************************

8. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

9. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

10. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

11. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

12. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

13. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

14. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

15. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

16. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

17. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

18. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

19. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KJ535721 (Listeria phage List-36, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

20. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 0, identity: 1.0

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgcaacttgctta	Protospacer
******************************

21. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 0, identity: 1.0

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcataga	Protospacer
******************************

22. spacer 5.13|2732927|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

gaacaacagttaacagtgtttataacaaca	CRISPR spacer
gaacaacagttaacagtgtttataacaaca	Protospacer
******************************

23. spacer 5.14|2732993|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 0, identity: 1.0

ctgtactcattaattaattcttgcattctc	CRISPR spacer
ctgtactcattaattaattcttgcattctc	Protospacer
******************************

24. spacer 5.14|2732993|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 0, identity: 1.0

ctgtactcattaattaattcttgcattctc	CRISPR spacer
ctgtactcattaattaattcttgcattctc	Protospacer
******************************

25. spacer 5.14|2732993|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 0, identity: 1.0

ctgtactcattaattaattcttgcattctc	CRISPR spacer
ctgtactcattaattaattcttgcattctc	Protospacer
******************************

26. spacer 5.17|2733191|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 0, identity: 1.0

gtgtacatccaatttgtagcttgatagatg	CRISPR spacer
gtgtacatccaatttgtagcttgatagatg	Protospacer
******************************

27. spacer 3.3|569024|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 1, identity: 0.972

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgatttttcgtagcccaattgctaaa	Protospacer
************.***********************

28. spacer 3.3|569024|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.972

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgatttttcgtagcccaattgctaaa	Protospacer
************.***********************

29. spacer 3.25|570449|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctcgatttc	Protospacer
***********************.************

30. spacer 3.25|570449|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctcgatttc	Protospacer
***********************.************

31. spacer 3.25|570449|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcattaaaccacctcgatttc	Protospacer
*******************.****************

32. spacer 3.27|570577|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.972

acgtttgcggtagttttaccgggcacggtcaaatat	CRISPR spacer
acgttcgcggtagttttaccgggcacggtcaaatat	Protospacer
*****.******************************

33. spacer 3.27|570577|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 1, identity: 0.972

acgtttgcggtagttttaccgggcacggtcaaatat	CRISPR spacer
acgttcgcggtagttttaccgggcacggtcaaatat	Protospacer
*****.******************************

34. spacer 3.28|570642|37|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to KY705255 (Streptococcus phage P0095, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

35. spacer 3.28|570642|37|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to KY705251 (Streptococcus phage P0091, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

36. spacer 3.28|570642|37|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to KX879643 (Streptococcus phage CHPC1151, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

37. spacer 3.28|570642|37|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to MK202161 (Streptococcus phage CHPC1282, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

38. spacer 3.28|570642|37|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to KY705252 (Streptococcus phage P0092, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

39. spacer 3.28|570642|37|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to MH937506 (Streptococcus phage CHPC1148, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

40. spacer 3.28|570642|37|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to KY705253 (Streptococcus phage P0093, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

41. spacer 3.28|570642|37|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to KY705254 (Streptococcus phage P0094, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

42. spacer 5.7|2732531|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KJ094028 (Listeria phage LP-083-1 contig 2, partial genome) position: , mismatch: 1, identity: 0.967

tggcgtgttcaaaaaatgaaaagtgccttg	CRISPR spacer
tggcgtgttcaaaaaatgaaaagtaccttg	Protospacer
************************.*****

43. spacer 5.7|2732531|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to DQ003641 (Listeria phage P35, complete genome) position: , mismatch: 1, identity: 0.967

tggcgtgttcaaaaaatgaaaagtgccttg	CRISPR spacer
tggcgtgttcaaaaaatgaaaagtaccttg	Protospacer
************************.*****

44. spacer 5.8|2732597|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 1, identity: 0.967

ttagtatctaattcgtgttaatattttttt	CRISPR spacer
ttagtatctaattcatgttaatattttttt	Protospacer
**************.***************

45. spacer 5.8|2732597|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 1, identity: 0.967

ttagtatctaattcgtgttaatattttttt	CRISPR spacer
ttagtatctaattcatgttaatattttttt	Protospacer
**************.***************

46. spacer 5.10|2732729|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.967

taataaatccattctggttcatcatcaaaa	CRISPR spacer
taataaatccattctggttcatcatcaaag	Protospacer
*****************************.

47. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacaaggttttcttatctgcaacttgctta	Protospacer
**** *************************

48. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacaaggttttcttatctgcaacttgctta	Protospacer
**** *************************

49. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatccgcaacttgctta	Protospacer
*****************.************

50. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacaaggttttcttatctgcaacttgctta	Protospacer
**** *************************

51. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacaaggttttcttatctgcaacttgctta	Protospacer
**** *************************

52. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatccgcaacttgctta	Protospacer
*****************.************

53. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KJ668717 (Listeria phage LMTA-34 hypothetical proteins, transposase domain-containing protein, and hypothetical proteins genes, complete cds) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttgtctgcaacttgctta	Protospacer
**************.***************

54. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacaaggttttcttatctgcaacttgctta	Protospacer
**** *************************

55. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 1, identity: 0.967

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacaaggttttcttatctgcaacttgctta	Protospacer
**** *************************

56. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 1, identity: 0.967

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
acttggtcatttaaaatatcaaggcataga	Protospacer
***.**************************

57. spacer 5.14|2732993|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 1, identity: 0.967

ctgtactcattaattaattcttgcattctc	CRISPR spacer
ttgtactcattaattaattcttgcattctc	Protospacer
.*****************************

58. spacer 5.17|2733191|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KJ668718 (Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds) position: , mismatch: 1, identity: 0.967

gtgtacatccaatttgtagcttgatagatg	CRISPR spacer
gtatacatccaatttgtagcttgatagatg	Protospacer
**.***************************

59. spacer 5.18|2733257|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.967

acaacagtgtatcgttcatcagaaacgggt	CRISPR spacer
acaacagtgtatcgttcatctgaaacgggt	Protospacer
******************** *********

60. spacer 5.18|2733257|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.967

acaacagtgtatcgttcatcagaaacgggt	CRISPR spacer
acaacagtgtatcgttcatctgaaacgggt	Protospacer
******************** *********

61. spacer 3.3|569024|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.944

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgattttttgtagcccaattgctaaa	Protospacer
************.*****.*****************

62. spacer 3.8|569349|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 2, identity: 0.944

gtccacatcgacaataaaaaacacattgtatcactt	CRISPR spacer
gtccacattgacaacaaaaaacacattgtatcactt	Protospacer
********.*****.*********************

63. spacer 3.14|569734|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.944

ttgttcgacggcttagacaaccatcacgcttcttta	CRISPR spacer
cttttcgacggcttagacaaccatcacgcttcttta	Protospacer
.* *********************************

64. spacer 3.16|569864|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 2, identity: 0.944

ctcataaggatttcgaggcgggttaaacgacatgta	CRISPR spacer
ctcataaggattgcgaggcgggttaaatgacatgta	Protospacer
************ **************.********

65. spacer 3.25|570449|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 2, identity: 0.944

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctctatttc	Protospacer
***********************.****** *****

66. spacer 3.28|570642|37|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to MN689509 (Lactococcus phage CHPC1175, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaaccgagaacgtgtgttcattatcggacatctta	Protospacer
****** *******.**********************

67. spacer 3.28|570642|37|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to MK448735 (Streptococcus phage Javan349, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgggtgttcattgtcggacatctta	Protospacer
************** *********.************

68. spacer 5.10|2732729|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 2, identity: 0.933

taataaatccattctggttcatcatcaaaa	CRISPR spacer
taataaatccattccggttcatcatcaaag	Protospacer
**************.**************.

69. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 2, identity: 0.933

gacatggttttcttatctgcaacttgctta	CRISPR spacer
gacatggttttcttatctgtgacttgctta	Protospacer
*******************..*********

70. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcataag	Protospacer
****************************..

71. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcataag	Protospacer
****************************..

72. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcataag	Protospacer
****************************..

73. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KJ668718 (Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

74. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

75. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

76. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

77. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

78. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

79. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

80. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

81. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

82. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

83. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

84. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 2, identity: 0.933

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatttaaaatatcaaggcacagg	Protospacer
**************************.**.

85. spacer 5.13|2732927|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 2, identity: 0.933

gaacaacagttaacagtgtttataacaaca	CRISPR spacer
gaacaacagttaacagtgtttataacagcg	Protospacer
***************************.*.

86. spacer 3.1|568894|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 3, identity: 0.917

aaagaccttcgatttcattctcactttccagttaat	CRISPR spacer
gaaaaccttcgatttcattcttactttccagttaat	Protospacer
.**.*****************.**************

87. spacer 3.15|569799|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 3, identity: 0.917

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
tataaaatattgtccaatgtgtggaaggagtttggg	Protospacer
************.********.*************.

88. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 3, identity: 0.9

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
acttggtcatttaaaatatcaaggcacagg	Protospacer
***.**********************.**.

89. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 3, identity: 0.9

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
acttggtcatttaaaatatcaaggcacagg	Protospacer
***.**********************.**.

90. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 3, identity: 0.9

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
acttggtcatttaaaatatcaaggcacagg	Protospacer
***.**********************.**.

91. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 3, identity: 0.9

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
acttggtcatttaaaatatcaaggcacagg	Protospacer
***.**********************.**.

92. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 3, identity: 0.9

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
acttggtcatttaaaatatcaaggcacagg	Protospacer
***.**********************.**.

93. spacer 3.15|569799|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 5, identity: 0.861

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
cattgaattttgcccaatgtgcggaaggagcttgga	Protospacer
.** .*** *********************.*****

94. spacer 5.16|2733125|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 5, identity: 0.833

ctgggaaagactcttcgttcacttcgtctt	CRISPR spacer
cggggaaagactcttcgatcgcttcgtcga	Protospacer
* *************** **.*******

95. spacer 5.16|2733125|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011450 (Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence) position: , mismatch: 5, identity: 0.833

ctgggaaagactcttcgttcacttcgtctt	CRISPR spacer
cggggaaagactcttcgatcgcttcgtcga	Protospacer
* *************** **.*******

96. spacer 3.12|569608|34|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.824

agaaaaaaaacatctttccaatttgttgttttgc	CRISPR spacer
agcaaaaaaacatctttcctatttgttttatcac	Protospacer
** **************** ******* * *..*

97. spacer 3.25|570449|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 6, identity: 0.833

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
tattaactttaatcggcatcaaaccacctctatctc	Protospacer
.*.  ************************* **.**

98. spacer 3.29|570708|35|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 6, identity: 0.829

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
taataaaaaatgagggcttagaaaatgaaaaaatt	Protospacer
*  *.*** ******.***************** *

99. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039041 (Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
tgttttcttgatcttgatcttgatcttgat	Protospacer
 *. ****** ************.*****

100. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN831788 (Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence) position: , mismatch: 6, identity: 0.8

--ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
ctgcca--cttgcccttgaccttgaccttgac	Protospacer
  * **  *****.*****.***********

101. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NC_041973 (Erwinia phage vB_EamM_RAY, complete genome) position: , mismatch: 6, identity: 0.8

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
gccattcttgatcttgatcttcaccgtcat	Protospacer
* ******** ********** *** * *

102. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NC_042098 (Erwinia phage vB_EamM_Desertfox, complete genome) position: , mismatch: 6, identity: 0.8

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
gccattcttgatcttgatcttcaccgtcat	Protospacer
* ******** ********** *** * *

103. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MG655267 (Erwinia phage vB_EamM_Bosolaphorus, complete genome) position: , mismatch: 6, identity: 0.8

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
gccattcttgatcttgatcttcaccgtcat	Protospacer
* ******** ********** *** * *

104. spacer 5.5|2732399|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to CP031025 (Lactobacillus phage ViSo-2018b, partial genome) position: , mismatch: 6, identity: 0.8

ttctaacaataaat----gaatacatcaaaaaga	CRISPR spacer
----aacagtaagtaaaagaatacatcaaaaaga	Protospacer
    ****.***.*    ****************

105. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033143 (Vibrio parahaemolyticus strain 160807 plasmid pVPWZ1, complete sequence) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

106. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021149 (Vibrio campbellii strain LA16-V1 plasmid pLA16-3, complete sequence) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

107. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034300 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-1, complete sequence) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

108. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034291 (Vibrio parahaemolyticus strain 20140722001-1 plasmid pVPCZ2014-1, complete sequence) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

109. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034296 (Vibrio parahaemolyticus strain 20140829008-1 plasmid pVPGD2014-1, complete sequence) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

110. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to AP014859 (Vibrio parahaemolyticus plasmid pVP2HP DNA, complete sequence, strain: VPE61) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

111. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to AP014861 (Vibrio parahaemolyticus plasmid pVPE61b DNA, complete sequence, strain: VPE61) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

112. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034287 (Vibrio parahaemolyticus strain 20140624012-1 plasmid pVPHB2014-1, complete sequence) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

113. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046413 (Vibrio parahaemolyticus strain 19-021-D1 plasmid pVp_Kor-D1-1, complete sequence) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

114. spacer 5.12|2732861|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033139 (Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence) position: , mismatch: 6, identity: 0.8

actcggtcatttaaaatatcaaggcataga	CRISPR spacer
actcggtcatataaaatatcactgaattgc	Protospacer
********** **********  * ** *

115. spacer 5.17|2733191|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to AP014346 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S38-C5, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.8

gtgtacatccaatttgtagcttgatagatg	CRISPR spacer
tgataaatccaattagtagcttgatagata	Protospacer
  .** ******** **************.

116. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY290886 (Enterococcus faecalis strain Transconjugant T4 plasmid pJH-T4, complete sequence) position: , mismatch: 7, identity: 0.767

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
attactaatgctcttgatctagaccttgaa	Protospacer
. .*.*  ************ *********

117. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027515 (Enterococcus faecium strain AUSMDU00004028 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
attactaatgctcttgatctagaccttgaa	Protospacer
. .*.*  ************ *********

118. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039048 (Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
acccatcttgatcttgatcttgatcttgat	Protospacer
. *  ***** ************.*****

119. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MT701594 (Streptomyces phage Spernnie, complete genome) position: , mismatch: 7, identity: 0.767

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
gatcttcttgcgcttgaccttgaccttggg	Protospacer
*.. ******* *****.**********..

120. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MK433268 (Streptomyces phage Popy, complete genome) position: , mismatch: 7, identity: 0.767

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
cgggttcttgctcttgctctcgaccttggc	Protospacer
 * .************ ***.*******.

121. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MF467948 (Streptomyces phage DrGrey, complete genome) position: , mismatch: 7, identity: 0.767

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
cgggttcttgctcttgctctcgaccttggc	Protospacer
 * .************ ***.*******.

122. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MN586054 (Streptomyces phage FrodoSwaggins, complete genome) position: , mismatch: 7, identity: 0.767

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
cgggttcttgctcttgctctcgaccttggc	Protospacer
 * .************ ***.*******.

123. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MN204504 (Streptomyces phage Soshi, complete genome) position: , mismatch: 7, identity: 0.767

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
cgggttcttgctcttgctctcgaccttggc	Protospacer
 * .************ ***.*******.

124. spacer 5.5|2732399|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027463 (Escherichia coli isolate 07-4299 plasmid unnamed) position: , mismatch: 7, identity: 0.767

ttctaacaataaatgaatacatcaaaaaga	CRISPR spacer
ataaaacaataaatgaaaacatcgaaaaac	Protospacer
 *  ************* *****.****.

125. spacer 5.5|2732399|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MH356730 (Staphylococcus phage VB-SauS-SA2, complete genome) position: , mismatch: 7, identity: 0.767

ttctaa----caataaatgaatacatcaaaaaga	CRISPR spacer
----aaagttaaatgaatgaatacattaaaaaga	Protospacer
    **     ***.***********.*******

126. spacer 5.7|2732531|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 7, identity: 0.767

---tggcgtgttcaaaaaatgaaaagtgccttg	CRISPR spacer
cctctgcg---tcataaaatgaaaagtgcctta	Protospacer
   . ***   *** *****************.

127. spacer 5.8|2732597|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028888 (Borrelia turcica IST7 plasmid cp33, complete sequence) position: , mismatch: 7, identity: 0.767

---ttagtatctaattcgtgttaatattttttt	CRISPR spacer
aatttag---ctaatttgtgttaatattttaac	Protospacer
   ****   ******.*************  .

128. spacer 5.18|2733257|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY888886 (Acinetobacter pittii strain IHIT24944 plasmid pAP24944-OXA-58, complete sequence) position: , mismatch: 7, identity: 0.767

acaacagtgtatcgttcatcagaaacgggt	CRISPR spacer
acaactgtgtatcgttcatcaaatccgtaa	Protospacer
***** ***************.*  ** .

129. spacer 5.18|2733257|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033131 (Acinetobacter wuhouensis strain WCHAW010062 plasmid pOXA58_010062, complete sequence) position: , mismatch: 7, identity: 0.767

acaacagtgtatcgttcatcagaaacgggt	CRISPR spacer
acaactgtgtatcgttcatcaaatccgtaa	Protospacer
***** ***************.*  ** .

130. spacer 5.18|2733257|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032281 (Acinetobacter sp. WCHA55 plasmid p2_010055, complete sequence) position: , mismatch: 7, identity: 0.767

acaacagtgtatcgttcatcagaaacgggt	CRISPR spacer
acaactgtgtatcgttcatcaaatccgtaa	Protospacer
***** ***************.*  ** .

131. spacer 5.19|2733323|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.767

caaaagtatcttgtgaaagcgaaagaacca	CRISPR spacer
cgctattatcttttgaaagccaaagaacct	Protospacer
*.  * ****** ******* ********

132. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
gatcttcctgctcttgatgttgaccttccg	Protospacer
*.. ***.********** ********  .

133. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to GQ919031 (Streptomyces phage ZL12, complete genome) position: , mismatch: 8, identity: 0.733

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
cccgttcttgcccttgaccttgaccttctt	Protospacer
  *.*******.*****.*********

134. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to MN204492 (Streptomyces phage GirlPower, complete genome) position: , mismatch: 8, identity: 0.733

ggcattcttgctcttgatcttgaccttgaa	CRISPR spacer
gttgctcttgctcttgctctcgaccttggc	Protospacer
* ...*********** ***.*******.

135. spacer 5.5|2732399|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MF477836 (Macrococcus canis strain KM0218 plasmid pKM0218, complete sequence) position: , mismatch: 8, identity: 0.733

ttctaacaataaatgaatacatcaaaaaga	CRISPR spacer
ataatgaaataaatgaatacatcaataata	Protospacer
 *   . ****************** ** *

136. spacer 5.5|2732399|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to AP014435 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22C-MedDCM-OCT-S41-C155, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 8, identity: 0.733

ttctaacaataaatgaatacatcaaaaaga	CRISPR spacer
aaaggacaataaatgaaaaaatcaaaaata	Protospacer
    .************ * ******** *

137. spacer 5.5|2732399|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to AP013443 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C22C-MedDCM-OCT-S23-C7) position: , mismatch: 8, identity: 0.733

ttctaacaataaatgaatacatcaaaaaga	CRISPR spacer
aaaggacaataaatgaaaaaatcaaaaata	Protospacer
    .************ * ******** *

138. spacer 5.5|2732399|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to AP014428 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S29-C101, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 8, identity: 0.733

ttctaacaataaatgaatacatcaaaaaga	CRISPR spacer
aaaggacaataaatgaaaaaatcaaaaata	Protospacer
    .************ * ******** *

139. spacer 5.16|2733125|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 8, identity: 0.733

ctgggaa-----agactcttcgttcacttcgtctt	CRISPR spacer
-----aatcgttgaactcttcgatcacttcgtctt	Protospacer
     **     ..******** ************

140. spacer 3.12|569608|34|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

agaaaaaaaacatctttccaatttgttgttttgc-----	CRISPR spacer
aagaaaaaaacatatttccaatt-----ttttccaaaaa	Protospacer
*..********** *********     **** *

141. spacer 3.17|569929|35|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 9, identity: 0.743

gcttttttcaacaattttatcaccagatgtcatta	CRISPR spacer
agttttttcaacaattttatgaacagataattttt	Protospacer
. ****************** * *****. . **

142. spacer 3.29|570708|35|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to MK448625 (Streptococcus satellite phage Javan738, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

143. spacer 3.29|570708|35|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

144. spacer 3.29|570708|35|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtctgaactatgaggacttagaaagtgaagacctg	Protospacer
 *.**** ****************.****.*

145. spacer 3.29|570708|35|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

146. spacer 3.29|570708|35|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

147. spacer 3.29|570708|35|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

148. spacer 5.3|2732267|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039048 (Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

ggcattcttgctcttgatcttgaccttgaa------	CRISPR spacer
------cttgatcttgatcttgatcttgatcttgat	Protospacer
      **** ************.*****

149. spacer 5.7|2732531|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tggcgtgttcaaaaaatgaaaagtgccttg	CRISPR spacer
aatggaaaacaaaaaatgaaaagcgccttg	Protospacer
 .  * .  **************.******

150. spacer 5.11|2732795|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026119 (Halobacillus litoralis strain ERB 031 plasmid pLDW-31, complete sequence) position: , mismatch: 9, identity: 0.7

gacatggttttcttatctgcaacttgctta	CRISPR spacer
agagacgttttcttatgagcaacttgcttc	Protospacer
.. .  **********  ***********

151. spacer 5.17|2733191|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NC_007412 (Trichormus variabilis ATCC 29413 plasmid C, complete sequence) position: , mismatch: 9, identity: 0.7

gtgtacatccaatttgtagcttgatagatg	CRISPR spacer
actatcatcgaatttgtagcttgatatctt	Protospacer
..   **** ****************  *

152. spacer 5.17|2733191|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047244 (Trichormus variabilis 0441 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

gtgtacatccaatttgtagcttgatagatg	CRISPR spacer
actatcatcgaatttgtagcttgatatctt	Protospacer
..   **** ****************  *

153. spacer 3.26|570514|34|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034816 (Paracoccus sp. Arc7-R13 plasmid unnamed6, complete sequence) position: , mismatch: 11, identity: 0.676

caagatatgctagaaatggcgcaaatagcgcgcg	CRISPR spacer
gtccggctgcttgaaatggcgcagatagcgcgtc	Protospacer
    .  **** ***********.********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

126289 : 132814

Listeria_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AEO02188.1\|126289_126742_-	bacteriophage gp35-type protein	A0A059T7S0	Listeria_phage	4.0e-31	47.9
AEO02189.1\|126747_127083_-	helix-turn-helix domain-containing protein	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
AEO02190.1\|127299_127728_+	antigen D	NA	NA	NA	NA
AEO02191.1\|127739_128156_+	lmaC protein	A8ASQ1	Listeria_phage	1.3e-20	39.3
AEO02192.1\|128433_128823_+	prophage LambdaLm01	NA	NA	NA	NA
AEO02193.1\|128835_129348_+	prophage LambdaLm01	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
AEO02194.1\|129395_129698_+	hypothetical protein	NA	NA	NA	NA
AEO02195.1\|129751_130144_+	hypothetical protein	NA	NA	NA	NA
AEO02196.1\|130130_131999_+	hypothetical protein	A0A097PAU2	Streptococcus_pyogenes_phage	1.7e-19	45.3
AEO02197.1\|131995_132814_+	hypothetical protein	A0A060AFE1	Staphylococcus_phage	4.2e-39	35.0

DBSCAN-SWA_2

1145120 : 1154078

Hokovirus(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AEO03184.1\|1145120_1145504_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
AEO03185.1\|1145525_1146509_+	glycosyltransferase	A0A1V0SAH6	Catovirus	3.1e-12	35.3
AEO03186.1\|1146538_1147537_+	hypothetical protein	A0A1V0SAH6	Catovirus	3.0e-10	31.7
AEO03187.1\|1147745_1149236_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
AEO03188.1\|1149247_1150072_+	NAD+ synthetase	G3MA24	Bacillus_virus	2.2e-67	52.6
AEO03189.1\|1150084_1150393_+	monooxygenase	NA	NA	NA	NA
AEO03190.1\|1150452_1150857_+	PTS system IIB component	NA	NA	NA	NA
AEO03191.1\|1150985_1152542_+	GMP synthase	A0A1V0SH76	Hokovirus	3.9e-17	28.1
AEO03192.1\|1152674_1154078_+	hypothetical protein	Q38324	Lactococcus_phage	9.2e-18	26.0

DBSCAN-SWA_3

1419193 : 1460639

Streptococcus_phage(14.29%)

holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AEO03476.1\|1419193_1420486_+\|protease	zinc protease	A0A1X9I714	Streptococcus_phage	1.1e-54	30.8
AEO03477.1\|1420466_1421753_+	peptidase	NA	NA	NA	NA
AEO03478.1\|1421844_1422576_+	3-ketoacyl-(acyl-carrier-protein) reductase	NA	NA	NA	NA
AEO03479.1\|1422626_1423556_+	DNA-binding domain-containing protein	NA	NA	NA	NA
AEO03480.1\|1423645_1424224_+	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
AEO03481.1\|1424292_1425537_+	cinA	NA	NA	NA	NA
AEO03482.1\|1425809_1426856_+	RecA protein	A0A0S2MVG1	Bacillus_phage	6.0e-131	68.5
AEO03483.1\|1427156_1428719_+	hypothetical protein	NA	NA	NA	NA
AEO03484.1\|1428832_1429330_+	acetyltransferase	NA	NA	NA	NA
AEO03485.1\|1429334_1430138_+	hypothetical protein	NA	NA	NA	NA
AEO03486.1\|1430130_1430517_+	YmcA	NA	NA	NA	NA
AEO03487.1\|1430626_1433209_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.0e-38	24.9
AEO03488.1\|1433231_1435043_+	DNA mismatch repair protein MutL	A0A1B2LRQ5	Wolbachia_phage	1.3e-72	34.6
AEO03489.1\|1435059_1435608_+	glycerol uptake operon antiterminator regulatory protein	NA	NA	NA	NA
AEO03490.1\|1436033_1438265_+	formate acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	2.5e-182	43.4
AEO03491.1\|1438341_1439088_+	pyruvate formate-lyase 1-activating enzyme	E5DI79	Enterobacter_phage	2.5e-06	35.3
AEO03492.1\|1439122_1439653_-	transcriptional regulator	NA	NA	NA	NA
AEO03493.1\|1439819_1441013_+	multidrug resistance transporter	NA	NA	NA	NA
AEO03494.1\|1441146_1441695_+	hypothetical protein	NA	NA	NA	NA
AEO03495.1\|1441711_1441939_+	DNA-binding protein	NA	NA	NA	NA
AEO03496.1\|1441979_1442513_+	DNA topology modulation protein FlaR	NA	NA	NA	NA
AEO03497.1\|1442766_1444086_-	peptidoglycan bound protein	NA	NA	NA	NA
AEO03498.1\|1444271_1445441_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA
AEO03499.1\|1445590_1446757_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
AEO03500.1\|1446780_1447380_-	hypothetical protein	NA	NA	NA	NA
AEO03501.1\|1447449_1448694_-	BtlA	NA	NA	NA	NA
AEO03502.1\|1448712_1449981_-	type I phosphodiesterase/nucleotide pyrophosphatase	NA	NA	NA	NA
AEO03503.1\|1450044_1451082_-	integral membrane protein	NA	NA	NA	NA
AEO03504.1\|1451098_1451995_-	UDP-N-acetylenolpyruvoylglucosamine reductase	NA	NA	NA	NA
AEO03505.1\|1452210_1453197_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	NA	NA	NA
AEO03506.1\|1453193_1454708_+\|holin	osmotically activated L-carnitine/choline ABC transporter	NA	NA	NA	NA
AEO03507.1\|1454743_1455574_-	hypothetical protein	NA	NA	NA	NA
AEO03508.1\|1455712_1457059_-	nramp family mn2+/fe2+ transporter	NA	NA	NA	NA
AEO03509.1\|1457171_1457843_-\|holin	glycine betaine/carnitine/choline transport system permease opuCD	NA	NA	NA	NA
AEO03510.1\|1457857_1458784_-\|holin	osmotically activated L-carnitine/choline ABC transporter	NA	NA	NA	NA
AEO03511.1\|1458785_1459442_-\|holin	osmotically activated L-carnitine/choline ABC transporter	NA	NA	NA	NA
AEO03512.1\|1459445_1460639_-\|holin	osmotically activated L-carnitine/choline ABC transporter	F2Y1V5	Organic_Lake_phycodnavirus	3.2e-11	29.6

DBSCAN-SWA_4

1836780 : 1845066

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AEO03850.1\|1836780_1837347_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9
AEO03851.1\|1837343_1838393_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.0e-61	43.2
AEO03852.1\|1838411_1839839_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
AEO03853.1\|1839823_1842043_-	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	2.6e-160	41.4
AEO03854.1\|1842035_1842719_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
AEO03855.1\|1842722_1842968_-	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
AEO03856.1\|1842979_1843693_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	2.7e-42	38.7
AEO03857.1\|1843773_1845066_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.2e-17	32.6

DBSCAN-SWA_5

2344079 : 2402361

Listeria_phage(88.24%)

tail,plate,capsid,holin,portal,protease,integrase,terminase

attL 2353022:2353036|attR 2405467:2405481

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AEO04345.1\|2344079_2344601_-\|protease	intracellular protease 1	NA	NA	NA	NA
AEO04346.1\|2344764_2345109_-	hypothetical protein	NA	NA	NA	NA
AEO04347.1\|2345105_2345297_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
AEO04348.1\|2345447_2345798_+	beta-glucoside-specific PTS system IIA component	NA	NA	NA	NA
AEO04349.1\|2345788_2346664_-	acetyltransferase	NA	NA	NA	NA
AEO04350.1\|2346743_2347052_-	N-6 Adenine-specific DNA methylase YitW	NA	NA	NA	NA
AEO04351.1\|2347116_2347869_-	hypothetical protein	NA	NA	NA	NA
AEO04352.1\|2348020_2348833_+	HAD-superfamily hydrolase	NA	NA	NA	NA
AEO04353.1\|2348910_2349813_-	YitT family protein	NA	NA	NA	NA
AEO04354.1\|2349896_2350259_-	hypothetical protein	NA	NA	NA	NA
AEO04355.1\|2350279_2351128_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA
AEO04356.1\|2351128_2354836_-	recombination helicase AddA	G3MA40	Bacillus_virus	1.4e-20	30.9
2353022:2353036	attL	NA	NA	NA	NA
AEO04357.1\|2354837_2358311_-	ATP-dependent nuclease subunit B	NA	NA	NA	NA
AEO04358.1\|2358460_2358817_-	yhzC protein	NA	NA	NA	NA
AEO04359.1\|2358947_2359226_+	comK'	NA	NA	NA	NA
AEO04360.1\|2359226_2359439_-	gp33	A8ATC6	Listeria_phage	1.2e-14	64.9
AEO04361.1\|2359420_2359654_-	gp22	A0A059T6E1	Listeria_phage	1.8e-35	94.8
AEO04362.1\|2359941_2360187_+	gp25	A8ATW9	Listeria_phage	9.7e-08	48.1
AEO04363.1\|2360215_2360587_+	gp29	A0A059T5F6	Listeria_phage	5.3e-58	92.7
AEO04364.1\|2360592_2361042_+	gp28	A8ATW7	Listeria_phage	2.4e-76	100.0
AEO04365.1\|2361066_2361564_+	hypothetical protein	A8ATW6	Listeria_phage	2.3e-88	95.8
AEO04366.1\|2361823_2362612_+	gp21	A8ATW5	Listeria_phage	4.2e-153	100.0
AEO04367.1\|2362652_2363498_-	endolysin	A0A059T7Y8	Listeria_phage	2.0e-137	89.4
AEO04368.1\|2363497_2363779_-\|holin	phage holin	A8ASL4	Listeria_phage	3.4e-41	94.6
AEO04369.1\|2363791_2364157_-	gp23	Q9T1A0	Listeria_phage	7.4e-12	100.0
AEO04370.1\|2364185_2364344_-	gp22	Q9T1A1	Listeria_phage	3.0e-18	98.1
AEO04371.1\|2364348_2364666_-\|tail	short tail fibre	Q9T1A2	Listeria_phage	1.3e-49	92.4
AEO04372.1\|2364677_2365751_-	gp20	Q9T1A3	Listeria_phage	2.8e-192	96.6
AEO04373.1\|2365750_2366779_-\|plate,tail	tail or base plate protein gp19	Q9T1A4	Listeria_phage	5.6e-190	99.1
AEO04374.1\|2366779_2367805_-	gp18	Q9T1A5	Listeria_phage	4.3e-198	98.2
AEO04375.1\|2367813_2368632_-	gp17	Q9T1A6	Listeria_phage	6.1e-147	93.0
AEO04376.1\|2368633_2373997_-\|tail	tail tape-measure protein	A8ASK6	Listeria_phage	0.0e+00	93.1
AEO04377.1\|2374007_2374613_-	gp15	Q9T1A8	Listeria_phage	1.3e-109	100.0
AEO04378.1\|2374617_2375040_-	gp14	A8ASK4	Listeria_phage	9.1e-70	99.3
AEO04379.1\|2375091_2375424_-	gp13	A0A059T5E4	Listeria_phage	1.7e-39	95.9
AEO04380.1\|2375353_2375788_-\|tail	major tail shaft protein	Q9T1B1	Listeria_phage	1.5e-75	97.2
AEO04381.1\|2375790_2376198_-	gp11	Q9T1B2	Listeria_phage	9.0e-67	98.5
AEO04382.1\|2376197_2376536_-	gp10	Q9T1B3	Listeria_phage	2.2e-58	100.0
AEO04383.1\|2376535_2376898_-	gp9	A0A0B5D151	Listeria_phage	8.6e-61	95.8
AEO04384.1\|2376897_2377293_-	gp8	A0A059T5E3	Listeria_phage	3.7e-65	97.7
AEO04385.1\|2377311_2378313_-\|capsid	phage capsid protein	A0A059T6D4	Listeria_phage	5.0e-183	97.9
AEO04386.1\|2378312_2378903_-	scaffolding protein	Q9T1B8	Listeria_phage	2.6e-75	89.8
AEO04387.1\|2378993_2380121_-\|capsid	minor capsid protein	A0A059T7W2	Listeria_phage	4.3e-199	95.7
AEO04388.1\|2380121_2381891_-\|portal	phage portal protein	A0A0B5D0F2	Listeria_phage	2.3e-268	93.8
AEO04389.1\|2381894_2383205_-\|terminase	phage terminase large subunit	A0A286QNX6	Streptococcus_phage	6.5e-167	65.6
AEO04390.1\|2383197_2383953_-\|terminase	phage terminase small subunit	V5URT8	Oenococcus_phage	2.4e-44	46.1
AEO04391.1\|2383998_2384538_-	hypothetical protein	NA	NA	NA	NA
AEO04392.1\|2384797_2385232_-	gp66	A8AU03	Listeria_phage	9.0e-73	95.1
AEO04393.1\|2385250_2385415_-	gp65	A8ASQ0	Listeria_phage	6.7e-21	96.3
AEO04394.1\|2385426_2385552_-	gp64	A8AU01	Listeria_phage	1.9e-12	95.1
AEO04395.1\|2385544_2385949_-	gp63	A8AU00	Listeria_phage	1.7e-70	98.5
AEO04396.1\|2385914_2386055_-	gp62	A8ATZ9	Listeria_phage	2.6e-18	100.0
AEO04397.1\|2386051_2386357_-	gp61	A8ATZ8	Listeria_phage	1.5e-45	98.0
AEO04398.1\|2386384_2386768_-	hypothetical protein	NA	NA	NA	NA
AEO04399.1\|2386783_2387266_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	2.7e-78	93.1
AEO04400.1\|2387262_2387442_-	hypothetical protein	A0A076G7F4	Listeria_phage	8.1e-20	87.3
AEO04401.1\|2387438_2387909_-	gp54	A0A060AFJ6	Listeria_phage	2.9e-40	89.7
AEO04402.1\|2387905_2388349_-	hypothetical protein	A8ASP1	Listeria_phage	2.1e-45	87.1
AEO04403.1\|2388345_2388543_-	hypothetical protein	A0A0B5CU49	Listeria_phage	2.0e-27	95.4
AEO04404.1\|2388545_2389142_-	gp51	Q8W5X2	Listeria_phage	5.8e-54	52.5
AEO04405.1\|2389153_2390116_-	hypothetical protein	H7BVD3	unidentified_phage	4.5e-48	38.7
AEO04406.1\|2390133_2390388_-	gp32	Q8W5X5	Listeria_phage	2.7e-37	97.6
AEO04407.1\|2390384_2391314_-	gp49	I1W658	Staphylococcus_phage	8.8e-17	40.5
AEO04408.1\|2391334_2392126_-	hypothetical protein	A0A290GJV0	Caldibacillus_phage	1.7e-77	54.2
AEO04409.1\|2392097_2392979_-	hypothetical protein	A0A2P1JTZ5	Anoxybacillus_phage	1.2e-87	59.0
AEO04410.1\|2392975_2393179_-	hypothetical protein	NA	NA	NA	NA
AEO04411.1\|2393396_2393585_-	gp39	A0A0B5CU43	Listeria_phage	1.0e-28	98.4
AEO04412.1\|2393693_2393909_-	gp44	Q9T176	Listeria_phage	1.8e-26	90.1
AEO04413.1\|2393905_2394439_-	gp43	A0A059T5F0	Listeria_phage	1.1e-83	93.1
AEO04414.1\|2394559_2395339_-	gp37	A0A059T6E7	Listeria_phage	1.1e-142	98.5
AEO04415.1\|2395402_2395645_+	hypothetical protein	A0A059T7Q3	Listeria_phage	1.8e-38	100.0
AEO04416.1\|2395637_2395799_-	hypothetical protein	A0A059T7X7	Listeria_phage	1.2e-19	98.1
AEO04417.1\|2395830_2396112_-	gp41	A0A0B5CTX3	Listeria_phage	1.0e-40	100.0
AEO04418.1\|2396137_2396422_-	hypothetical protein	A0A0B5D168	Listeria_phage	2.9e-40	85.1
AEO04419.1\|2396433_2396628_-	hypothetical protein	A0A059T6E5	Listeria_phage	6.3e-26	96.9
AEO04420.1\|2396693_2396924_+	gp37-1	Q9T185	Listeria_phage	4.6e-36	100.0
AEO04421.1\|2396852_2397119_-	gp37	A0A059T7Q1	Listeria_phage	2.5e-41	100.0
AEO04422.1\|2397122_2397365_-	hypothetical protein	A0A059T7X5	Listeria_phage	1.7e-36	100.0
AEO04423.1\|2397490_2397796_+	transcriptional regulator	A0A059T669	Listeria_phage	6.4e-49	100.0
AEO04424.1\|2397828_2398320_+	gp35	A0A059T5E8	Listeria_phage	3.4e-92	100.0
AEO04425.1\|2398342_2398561_+	gp34	A0A059T6E3	Listeria_phage	5.4e-34	100.0
AEO04426.1\|2398576_2399299_+	gp33	A0A059T7P9	Listeria_phage	1.3e-105	100.0
AEO04427.1\|2399320_2400061_+	gp32	Q9T192	Listeria_phage	4.5e-133	100.0
AEO04428.1\|2400124_2401483_+\|integrase	integrase	Q8LTD8	Listeria_phage	3.0e-255	98.7
AEO04429.1\|2401500_2401950_+	competence transcription factor ComK	NA	NA	NA	NA
AEO04430.1\|2402004_2402361_-	DNA-binding protein	A0A0A7RTK4	Clostridium_phage	7.8e-06	40.7
2405467:2405481	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2555805 : 2563649

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AEO04570.1\|2555805_2556777_-	hypothetical protein	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
AEO04571.1\|2556784_2557753_-	hypothetical protein	A1IMD5	Streptococcus_phage	6.7e-68	43.3
AEO04572.1\|2557754_2558630_-	hypothetical protein	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
AEO04573.1\|2558737_2560468_-	phosphoglucomutase/phosphomannomutase	A0A1X9I671	Streptococcus_phage	7.8e-176	54.2
AEO04574.1\|2560509_2561553_-	aldose 1-epimerase	NA	NA	NA	NA
AEO04575.1\|2561587_2562571_-	UDP-glucose 4-epimerase	A0A2K9L1R4	Tupanvirus	2.2e-50	36.9
AEO04576.1\|2562689_2563649_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

DBSCAN-SWA_7

2682415 : 2721202

Listeria_phage(94.0%)

holin,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AEO04689.1\|2682415_2682679_+	hypothetical protein	A0A2D0TCG7	unidentified_phage	1.9e-41	100.0
AEO04690.1\|2682683_2683133_+	gp28	Q9T196	Listeria_phage	1.3e-71	94.6
AEO04691.1\|2683206_2683806_-	gp27	Q9T197	Listeria_phage	1.0e-111	100.0
AEO04692.1\|2683792_2683969_-	gp26	Q9T198	Listeria_phage	6.3e-25	100.0
AEO04693.1\|2684207_2684915_-	phagelysin	A8ATW4	Listeria_phage	2.0e-130	98.7
AEO04694.1\|2684914_2685196_-\|holin	phage phi LC3 family holin	A8ATW3	Listeria_phage	3.0e-45	100.0
AEO04695.1\|2685195_2685501_-	gp18	A0A059T5E6	Listeria_phage	1.8e-43	100.0
AEO04696.1\|2685551_2687714_-	phage minor structural protein	A8ATW1	Listeria_phage	0.0e+00	99.7
AEO04697.1\|2687726_2689295_-	gp16	A8ATW0	Listeria_phage	3.1e-304	99.6
AEO04698.1\|2689291_2694082_-	gp15	A8ATV9	Listeria_phage	0.0e+00	88.2
AEO04699.1\|2694086_2694362_-	gp14	A0A0B5D116	Listeria_phage	5.7e-41	95.6
AEO04700.1\|2694394_2694826_-	gp13	A8ATV7	Listeria_phage	9.3e-70	94.4
AEO04701.1\|2695539_2695944_-	gp11	A8ATV5	Listeria_phage	2.1e-63	98.4
AEO04702.1\|2695940_2696258_-	gp10	A8ATV4	Listeria_phage	1.7e-49	95.2
AEO04703.1\|2696247_2696613_-	gp9	A8ATV3	Listeria_phage	1.6e-62	95.9
AEO04704.1\|2696612_2696966_-	gp8	A8ATV2	Listeria_phage	8.4e-61	99.1
AEO04705.1\|2696966_2697122_-	hypothetical protein	A0A0B5CYK6	Listeria_phage	1.0e-18	98.0
AEO04706.1\|2697135_2698008_-\|capsid	main capsid protein Gp34	A0A0B5CTX8	Listeria_phage	2.3e-152	93.8
AEO04707.1\|2698030_2698585_-	gp5	A8ATU9	Listeria_phage	8.8e-89	98.9
AEO04708.1\|2698680_2699724_-\|capsid	minor capsid protein	A0A0B5D111	Listeria_phage	9.1e-196	97.1
AEO04709.1\|2699728_2701285_-	gp3	A8ATU7	Listeria_phage	4.5e-300	98.8
AEO04710.1\|2701299_2702619_-\|terminase	phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	1.5e-232	88.3
AEO04711.1\|2702557_2703343_-	TerS	A0A0B5CTX0	Listeria_phage	3.0e-127	95.1
AEO04712.1\|2703382_2703610_-	gp62	A0A0B5CTV3	Listeria_phage	6.8e-32	94.7
AEO04713.1\|2704155_2704758_-	hypothetical protein	NA	NA	NA	NA
AEO04714.1\|2704784_2705222_-	gp66	A8ASQ1	Listeria_phage	8.5e-71	95.8
AEO04715.1\|2705387_2705774_-	hypothetical protein	A0A0B5CU14	Listeria_phage	5.6e-42	65.4
AEO04716.1\|2705777_2706182_-	hypothetical protein	A8ASP7	Listeria_phage	4.5e-58	86.6
AEO04717.1\|2706126_2706318_-	hypothetical protein	A8ASP6	Listeria_phage	1.8e-25	98.4
AEO04718.1\|2706336_2706819_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	7.4e-76	91.2
AEO04719.1\|2706815_2707316_-	hypothetical protein	NA	NA	NA	NA
AEO04720.1\|2707312_2707714_-	gp59	A8ATZ6	Listeria_phage	1.1e-43	72.5
AEO04721.1\|2707710_2707971_-	hypothetical protein	NA	NA	NA	NA
AEO04722.1\|2707970_2708177_-	gp127	A0A059T5G1	Listeria_phage	6.0e-27	100.0
AEO04723.1\|2708173_2708659_-	gp54	A0A059T6G6	Listeria_phage	6.6e-48	94.4
AEO04724.1\|2708655_2708865_-	gp55	A0A060ALG0	Listeria_phage	3.8e-29	92.8
AEO04725.1\|2708861_2709269_-	hypothetical protein	A0A0B5CYR4	Listeria_phage	5.2e-30	53.7
AEO04726.1\|2709265_2709454_-	hypothetical protein	NA	NA	NA	NA
AEO04727.1\|2709446_2710049_-	gp51	A8ATY9	Listeria_phage	4.2e-36	44.7
AEO04728.1\|2710045_2710255_-	gp48	A8ASN7	Listeria_phage	2.7e-27	92.8
AEO04729.1\|2710251_2710545_-	gp47	A8ASN6	Listeria_phage	4.0e-48	95.9
AEO04730.1\|2710561_2710759_-	hypothetical protein	NA	NA	NA	NA
AEO04731.1\|2710762_2711668_-	gp49	A0A0B5D175	Listeria_phage	9.1e-144	93.4
AEO04732.1\|2711705_2712617_-	recombinational DNA repair protein RecT	NA	NA	NA	NA
AEO04733.1\|2712609_2714121_-	hypothetical protein	A0A2I7SC81	Paenibacillus_phage	6.1e-76	36.2
AEO04734.1\|2714353_2714542_-	gp45	Q9T175	Listeria_phage	1.8e-22	82.3
AEO04735.1\|2714644_2714851_-	hypothetical protein	NA	NA	NA	NA
AEO04736.1\|2714840_2715371_-	gp43	A0A0B5D173	Listeria_phage	2.7e-79	89.6
AEO04737.1\|2715494_2716271_-	phage antirepressor protein/Antirepressor	A0A0B5D0I2	Listeria_phage	6.9e-140	97.7
AEO04738.1\|2716252_2716528_-	hypothetical protein	NA	NA	NA	NA
AEO04739.1\|2716533_2716815_-	gp41	A8ATX8	Listeria_phage	1.8e-37	95.7
AEO04740.1\|2716840_2717125_-	hypothetical protein	A0A0B5D168	Listeria_phage	4.5e-41	85.1
AEO04741.1\|2717136_2717331_-	hypothetical protein	A0A059T6E5	Listeria_phage	1.4e-25	95.3
AEO04742.1\|2717351_2717561_-	hypothetical protein	A0A0B5D0D3	Listeria_phage	3.5e-30	95.6
AEO04743.1\|2717726_2718149_+	transcriptional regulator	A0A0B5CYL9	Listeria_phage	7.7e-69	98.6
AEO04744.1\|2718164_2718590_+	hypothetical protein	A0A0B5CTZ7	Listeria_phage	2.2e-76	100.0
AEO04745.1\|2718604_2719312_+	hypothetical protein	A0A0B5CTT6	Listeria_phage	2.8e-124	100.0
AEO04746.1\|2719370_2719976_+	gp15	NA	NA	NA	NA
AEO04747.1\|2720020_2721202_+	hypothetical protein	S5MNZ2	Brevibacillus_phage	4.5e-50	31.2

Anti-CRISPR protein detection

Acr_ID: CP002001.1|AEO04689.1|2682415_2682679_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: CP002001.1|AEO04393.1|2385250_2385415_-|gp65

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP002001.1|AEO04689.1|2682415_2682679_+|hypothetical-protein

2682415_2682679_+

87 aa aa

AcrIIA4

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR0384\|AEO04689.1\|AcrIIA4\|II-A\|Verified\|Listeria-monocytogenes-J0161	1.0	1	1.0

2682415-2721202

CP002001.1|AEO04393.1|2385250_2385415_-|gp65

2385250_2385415_-

54 aa aa

2344079-2402361

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP002001_3	Unclear	3.9\|569414\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	569414-569449	36	2364997-2364962	1
CP002001_3	Unclear	3.25\|570449\|36\|CP002001\|PILER-CR,CRISPRCasFinder,CRT	570449-570484	36	2376518-2376553	0
CP002001_5	TypeII	5.4\|2732333\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2732333-2732362	30	2365027-2365056	0
CP002001_5	TypeII	5.18\|2733257\|30\|CP002001\|CRISPRCasFinder,CRT,PILER-CR	2733257-2733286	30	2367051-2367080	1

1. spacer 3.9|569414|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to CP002001 position: 2364997-2364962, mismatch: 1

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtagtacacctcaat	Protospacer
************************.***********

2. spacer 3.25|570449|36|CP002001|PILER-CR,CRISPRCasFinder,CRT matches to CP002001 position: 2376518-2376553, mismatch: 0

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaaccacctcgatttc	Protospacer
************************************

3. spacer 5.4|2732333|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to CP002001 position: 2365027-2365056, mismatch: 0

taactatccatcttgctatctgtatatgct	CRISPR spacer
taactatccatcttgctatctgtatatgct	Protospacer
******************************

4. spacer 5.18|2733257|30|CP002001|CRISPRCasFinder,CRT,PILER-CR matches to CP002001 position: 2367051-2367080, mismatch: 1

acaacagtgtatcgttcatcagaaacgggt	CRISPR spacer
acaacagtgtatcgttcatctgaaacgggt	Protospacer
******************** *********

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP002001

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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