CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_ALSM01000025	Streptococcus agalactiae GB00003 ctg7180000003148, whole genome shotgun sequence	1 crisprs	DinG,cas2,cas1,cas4,cas7,cas8c,cas5,cas3	13	1	0
NZ_ALSM01000012	Streptococcus agalactiae GB00003 ctg7180000003135, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALSM01000007	Streptococcus agalactiae GB00003 ctg7180000003130, whole genome shotgun sequence	0 crisprs	NA	0	0	1
NZ_ALSM01000019	Streptococcus agalactiae GB00003 ctg7180000003142, whole genome shotgun sequence	1 crisprs	cas9,cas1,cas2,csn2	4	0	0
NZ_ALSM01000022	Streptococcus agalactiae GB00003 ctg7180000003145, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_ALSM01000003	Streptococcus agalactiae GB00003 ctg7180000003126, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALSM01000021	Streptococcus agalactiae GB00003 ctg7180000003144, whole genome shotgun sequence	0 crisprs	WYL,DEDDh	0	1	0
NZ_ALSM01000010	Streptococcus agalactiae GB00003 ctg7180000003133, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_ALSM01000015	Streptococcus agalactiae GB00003 ctg7180000003138, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALSM01000023	Streptococcus agalactiae GB00003 ctg7180000003146, whole genome shotgun sequence	0 crisprs	csm6	0	1	0
NZ_ALSM01000024	Streptococcus agalactiae GB00003 ctg7180000003147, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALSM01000002	Streptococcus agalactiae GB00003 ctg7180000003125, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALSM01000013	Streptococcus agalactiae GB00003 ctg7180000003136, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALSM01000020	Streptococcus agalactiae GB00003 ctg7180000003143, whole genome shotgun sequence	0 crisprs	cas3	0	0	0
NZ_ALSM01000008	Streptococcus agalactiae GB00003 ctg7180000003131, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALSM01000018	Streptococcus agalactiae GB00003 ctg7180000003141, whole genome shotgun sequence	0 crisprs	csa3,cas3	0	2	0
NZ_ALSM01000011	Streptococcus agalactiae GB00003 ctg7180000003134, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALSM01000009	Streptococcus agalactiae GB00003 ctg7180000003132, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALSM01000014	Streptococcus agalactiae GB00003 ctg7180000003137, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_ALSM01000017	Streptococcus agalactiae GB00003 ctg7180000003140, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALSM01000001	Streptococcus agalactiae GB00003 ctg7180000003124, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALSM01000005	Streptococcus agalactiae GB00003 ctg7180000003128, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALSM01000006	Streptococcus agalactiae GB00003 ctg7180000003129, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALSM01000016	Streptococcus agalactiae GB00003 ctg7180000003139, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_ALSM01000004	Streptococcus agalactiae GB00003 ctg7180000003127, whole genome shotgun sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_ALSM01000025_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_ALSM01000025_1

106937-107364

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	CRT
TAATTTCAATCCACGCACCCGCAAAGGGTGCGAC	CRISPRCasFinder
AATTTCAATCCACGCACCCGCAAAGGGTGCGAC	PILER-CR

6 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_ALSM01000025_1

>merge|NZ_ALSM01000025|1|106937-107364|CRT,CRISPRCasFinder,PILER-CR
AGTTGAAACTACACACCCGCAAAGGGGCGATGATAATGAATTAATAAAAAAATAATCATTATTAATTTCAATCCACGCACCCGCAAAGGGTGCGACGCGTTGATATGAAAGGAAATTATAGAGATATGATATTTCAATCCACGCACCCGCAAAGGGTGCGACAAAACGGATGGTTGTATATTGCAGGCTATCAGCTAATTTCAATCCACGCACCCGCAAAGGGTGCGACATAATTATGGTAGTCTTATTTTTAATATAAAATAATTTCAATCCACGCACCCGCAAAGGGTGCGACGTTTGCTCTGCGTCAAGCGTAACAGCGAGACTTAATTTCAATCCACGCACCCGCAAAGGGTGCGACGTCTTTTCAGACAGAACATAAATGGAAATATAGTAATTTCAATCCACGCACCCGCAAAGGGTGCGAC

>NZ_ALSM01000025|1|1|106937-107364|CRT
AGTTGAAACTACACACCCGCAAAGGGGCGATG	ATAATGAATTAATAAAAAAATAATCATTATTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GCGTTGATATGAAAGGAAATTATAGAGATATGAT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	AAAACGGATGGTTGTATATTGCAGGCTATCAGCTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	ATAATTATGGTAGTCTTATTTTTAATATAAAATA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GTTTGCTCTGCGTCAAGCGTAACAGCGAGACTTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GTCTTTTCAGACAGAACATAAATGGAAATATAGTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC

>NZ_ALSM01000025|1|1|106999-107364|CRISPRCasFinder
TAATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GCGTTGATATGAAAGGAAATTATAGAGATATG
ATATTTCAATCCACGCACCCGCAAAGGGTGCGAC	AAAACGGATGGTTGTATATTGCAGGCTATCAGC
TAATTTCAATCCACGCACCCGCAAAGGGTGCGAC	ATAATTATGGTAGTCTTATTTTTAATATAAAA
TAATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GTTTGCTCTGCGTCAAGCGTAACAGCGAGACT
TAATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GTCTTTTCAGACAGAACATAAATGGAAATATAG
TAATTTCAATCCACGCACCCGCAAAGGGTGCGAC

>NZ_ALSM01000025|1|1|107000-107364|PILER-CR
AATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GCGTTGATATGAAAGGAAATTATAGAGATATGA
TATTTCAATCCACGCACCCGCAAAGGGTGCGAC	AAAACGGATGGTTGTATATTGCAGGCTATCAGCT
AATTTCAATCCACGCACCCGCAAAGGGTGCGAC	ATAATTATGGTAGTCTTATTTTTAATATAAAAT
AATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GTTTGCTCTGCGTCAAGCGTAACAGCGAGACTT
AATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GTCTTTTCAGACAGAACATAAATGGAAATATAGT
AATTTCAATCCACGCACCCGCAAAGGGTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_ALSM01000025.1\|WP_000049316.1\|105840_106800_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_ALSM01000025.1\|WP_000161892.1\|100499_100985_-\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|173914
NZ_ALSM01000025.1\|WP_000021305.1\|103552_104617_-\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_ALSM01000025.1\|WP_000262367.1\|108836_109508_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|224385
NZ_ALSM01000025.1\|WP_000790647.1\|99436_100510_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|226011
NZ_ALSM01000025.1\|WP_000592256.1\|101953_102403_+\|thiol-reductase-thioredoxin	unknown	unknown	gnl\|CDD\|273542
NZ_ALSM01000025.1\|WP_000032189.1\|117559_120211_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_ALSM01000025.1\|WP_000997618.1\|120232_120925_-\|hypothetical-protein	unknown	unknown	unknown
NZ_ALSM01000025.1\|WP_000384889.1\|100981_101272_-\|hypothetical-protein	unknown	unknown	unknown
NZ_ALSM01000025.1\|WP_000748012.1\|102447_103440_-\|aspartate--ammonia-ligase	unknown	unknown	gnl\|CDD\|225304
NZ_ALSM01000025.1\|WP_000492962.1\|104777_105680_-\|magnesium-transporter-CorA-family-protein	unknown	unknown	gnl\|CDD\|213361
NZ_ALSM01000025.1\|WP_000934859.1\|116562_117342_+\|hypothetical-protein	unknown	unknown	unknown
NZ_ALSM01000025.1\|WP_000345444.1\|110362_112258_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|187773
NZ_ALSM01000025.1\|WP_032455446.1\|112257_112986_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NZ_ALSM01000025.1\|WP_000988351.1\|113118_115542_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_ALSM01000025.1\|WP_000985604.1\|101283_101988_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|367574
NZ_ALSM01000025.1\|WP_000735207.1\|107814_108840_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_ALSM01000025.1\|WP_000137511.1\|98027_99362_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277323
NZ_ALSM01000025.1\|WP_000989528.1\|107510_107804_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_ALSM01000025.1\|WP_000889456.1\|109509_110358_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|226175

Protein	Function_ID	Function_description	E-value
NZ_ALSM01000025.1\|WP_000049316.1\|105840_106800_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.72879e-57
NZ_ALSM01000025.1\|WP_000161892.1\|100499_100985_-\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|173914	cd02163, PPAT, Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.	9.07742e-77
NZ_ALSM01000025.1\|WP_000021305.1\|103552_104617_-\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	1.01714e-19
NZ_ALSM01000025.1\|WP_000262367.1\|108836_109508_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	2.63288e-30
NZ_ALSM01000025.1\|WP_000790647.1\|99436_100510_-\|PDZ-domain-containing-protein	gnl\|CDD\|226011	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms].	1.28781e-135
NZ_ALSM01000025.1\|WP_000592256.1\|101953_102403_+\|thiol-reductase-thioredoxin	gnl\|CDD\|273542	TIGR01295, Pediocin_PA-1_biosynthesis_protein_PedC, bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.	2.96539e-08
NZ_ALSM01000025.1\|WP_000032189.1\|117559_120211_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_ALSM01000025.1\|WP_000748012.1\|102447_103440_-\|aspartate--ammonia-ligase	gnl\|CDD\|225304	COG2502, AsnA, Asparagine synthetase A [Amino acid transport and metabolism].	0
NZ_ALSM01000025.1\|WP_000492962.1\|104777_105680_-\|magnesium-transporter-CorA-family-protein	gnl\|CDD\|213361	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family. A uncharacterized subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes.The EcCorA-ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA-ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	4.87179e-70
NZ_ALSM01000025.1\|WP_000345444.1\|110362_112258_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187773	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-C subtype; also known as Csd1 family.	0
NZ_ALSM01000025.1\|WP_032455446.1\|112257_112986_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	1.52076e-112
NZ_ALSM01000025.1\|WP_000988351.1\|113118_115542_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.11439e-155
NZ_ALSM01000025.1\|WP_000985604.1\|101283_101988_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|367574	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.	3.89521e-82
NZ_ALSM01000025.1\|WP_000735207.1\|107814_108840_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	5.95494e-174
NZ_ALSM01000025.1\|WP_000137511.1\|98027_99362_-\|metallophosphoesterase	gnl\|CDD\|277323	cd00845, MPP_UshA_N_like, Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	7.10499e-59
NZ_ALSM01000025.1\|WP_000989528.1\|107510_107804_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.98207e-31
NZ_ALSM01000025.1\|WP_000889456.1\|109509_110358_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|226175	COG3649, COG3649, CRISPR system related protein [Defense mechanisms].	5.09634e-156

>NZ_ALSM01000025.1|WP_000049316.1|105840_106800_-|Gfo/Idh/MocA-family-oxidoreductase
MSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLASGEIGEVISISSTTAYPNIDHVTWFRELELGGGTVHFMAPYALSYLQYLFDATITHASGTATFPKGQSDSQSKLLLQLSNGVLVDIFLTTRLNLPHEMIIYGTEGRLIIPHFWKTTHAKLVRNDTSAQTIQVDMVSDFEKEAYHVSQMILEGQRVSHIMTPQLTLSGVKIIEDLYRSWGK
>NZ_ALSM01000025.1|WP_000492962.1|104777_105680_-|magnesium-transporter-CorA-family-protein
MFSSDFGFEIINVDDLSLQEERFLPSELLAYARDENESSFVRDIEGHLTLVYQLLDTQGHVDDVRHVPRVIPVTLFLKEDGLFVLANHKNINLVKKALNRVEKVDSPKHLLLSLVTAFSKQYFDVLDTISEERDKLINDLRKRPNKSNLARLANLQSGTVHLMMGTKQNFEMLTDLQNIEQDKENTRNEKMQLQDAIIEARQLSNMCSLNSQVFQELSSSYNNVLSNNLNDNVTTLTIISIGISIIAMVTSFYGMNVKLPFDSVDAVWVLIILITTIITIMLSIVMYIYVHKEDNHPKHK
>NZ_ALSM01000025.1|WP_000021305.1|103552_104617_-|MmcQ/YjbR-family-DNA-binding-protein
MSIESDFFRKKRFIFSSLEEFGFIKSDQEYIYCQTFMDNDFKAIITISLDGKIAGKVIDSALEEEYLPLRAANYNGSFVGEVRSAYMAILGDISDSCCKDLLFTKDQSNRLAEKIAKTFEDSVDYPFAKHPQYASYRVSGKWYALLFPLKMGKLENVPAQLSEDEVEVLNIKVNPQDMEILLQKEGIYPSYHMSKKTWVSIVLDNTLSDIEIFKLVSDSRKLVSPNKKSNSEPEFWIIPANPKFYDIDKEFAEHQLIDWTQKGKIAVGDYVFIYITAPIRALRYVCQVIERDLKTSTYLGARDVKAYMRLKLIRQFEDSTYPVAFLAEHGVKTVRGPRRMTKELRQVMAKTILE
>NZ_ALSM01000025.1|WP_000748012.1|102447_103440_-|aspartate--ammonia-ligase
MKKSFIHQQQEISFVKNTFTQYLIDKLEIVEVQGPILSQVGDGMQDNLSGIEHPVSVKVLNIPEAEFEVVHSLAKWKRHTLARFGFNEGEGLFVHMKALRPDEDSLDPTHSVYVDQWDWEKVIPDGRRNLDYLKETVEKIYKAIRLTELAVEARFDIESILPKRITFIHTEELVEKYPDLSPKERENAIAKEYGAVFLIGIGGELADGKPHDGRAPDYDDWTTPSENGFKGLNGDILVWNEQLGTAFELSSMGIRVDEDALKRQVVLTGDEDRLEFEWHKTLLRGFFPLTIGGGIGQSRLVMFLLRKKHIGEVQSSVWPKEVRDTFENIL
>NZ_ALSM01000025.1|WP_000592256.1|101953_102403_+|thiol-reductase-thioredoxin
MIKKLLLSLIAILCLTTLKSNLSSADTMTISPQQYQHMITNSDLIAITDKALVSKSQQSEATIFIGRPTCQYCRAFLPKLLKSQATLHSKIYYLDSQKYKGERLKSFFKKHHITTVPNLAHYQRGKMTKYLVQGSQATPQQIQTFLSQK
>NZ_ALSM01000025.1|WP_000985604.1|101283_101988_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MAIKLNNNFLIIMGTSFLLLLAYHIKKEGKEIPSSLFVISNFFDNSTLFFVIIVVMRVVAGTFGGRPLKTLDGKTTRPTTDKVKGAIFNMIGPFFEGGRVLDLFSGSGSLAIEAISRGMDQAVLVEKDRRAQVVIQENIAMTKSPEQFQLLKMEANRALEQLTGQFDLVLLDPPYAKEEIVKQIQIMDSKGLLGDDIMIVCETDKSVDLPEEIASFGIWKQKIYGISKVTVYVR
>NZ_ALSM01000025.1|WP_000384889.1|100981_101272_-|hypothetical-protein
MDYKLVMIILILVILIYLLLRLHYLEELLKHYHFKNDEGVCSLSRTKNPLYLLMAMITFLPNLINWIANGFEAIDIVRLIPVVVFLWLYYCGDDDE
>NZ_ALSM01000025.1|WP_000161892.1|100499_100985_-|pantetheine-phosphate-adenylyltransferase
MTKKALFTGSFDPVTNGHLDIIERASYLFDHVYIGLFYNLEKQGYFSIECRKKMLEEAIRQFKNVSVLVAQDRLAVDLAREVGAKYFVRGLRNSQDFDYEANLEFFNKQLADDIETVYLSTSPSLSPISSSRIRELIHFKASVKPFVPKSVVREVEKMSEE
>NZ_ALSM01000025.1|WP_000790647.1|99436_100510_-|PDZ-domain-containing-protein
MKNKDPKRKHKSLLGLLKWWIIGFAFLLLVLASLVVRLPYYLEMPGGAYDIRSVLKVNKKADKAKGSYNFVAVSVSQATPAQVFYAWLTPFTELSSKEETTGGFSNDDYLRINQFYMETSQNESVYQALKLANKQVSLTYKGVYVLNLAKNSTFKDRLHLADTVTGVNGKSFKNSSQLIKYVAALHLGDKVKVQYTSQGKKKESVGKVIKLSNGKNGIGIGLTDHTEVSSDVPVDFNTEGVGGPSAGLMFTLAIYDQLVKEDLRKGRKIAGTGTIEQNGHVGDIGGAGLKVVSAAKKGMDIFFVPNNPIDKNAKKGKTKVQTNYQEAKAAAKRLGTKMKIVPVQNVQQAIDYLKKTK
>NZ_ALSM01000025.1|WP_000137511.1|98027_99362_-|metallophosphoesterase
MTELIRILHLNDLHSHFENFPKVKRFFHDNQAQPIETISLDLGDNIDKSHPLTEASSGKANIQLMNELGIELATIGNNEGVGLSKKDLDQVYKDSDFTVIVGNLKDNTIEPSWAKPYIIYETQQGTKLAFLAYTFPYYKTYEPHGWMIEDPIDCLKCHLQINEIKEANCRILMSHLGIRFDTRIAQEFSEIDLIIGAHTHHLFEEGELINGTYLAAAGKYGRFVGSIDITFDNHTLKDILISTCDTKQLTGYPSDSDWAKKIESEGKEQLRKESLISFPAPLSLEESCQLVMDAMLFYAGADVAIINSGLIVQPFRKDFSRKNLHESLPHQMRLAKLTVSSQELLEIYETIYQQGQFLAQQKIHGMGFRGKYFGDVLHSGFDYKNGKIVYNEKDIDAKEEVILVIVDQYYFASYFECLKTKKVDLLFPELLRDVVADYLINMTL
>NZ_ALSM01000025.1|WP_000989528.1|107510_107804_-|CRISPR-associated-endonuclease-Cas2
MMVLVTYDVNTKTVAGRRRLRHVAKLCVDYGQRVQNSVFECSVTPAEFVEIKNELLTIIDQKSDSIRFYLLGKNWQNRVETIGKNDSYDPDIGVLLL
>NZ_ALSM01000025.1|WP_000735207.1|107814_108840_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYLTQDNFYLTRERDNIVIKQEGKIVHRFPYRIIDGIICFSYLGASPSLIELCTEKQINLSFHTPQGRFCGRFVGSTNGNVLLRREHYRLADHALSIEYAKRFILAKVSNSRKYLIRFKRDHRDRIDIQLFEDINTELMWALELIQSAPDKETLLGIEGQAANQYFRAFNELVLTDKDTFRFNGRTRRPPQDCINALMSLGYSLLTYECQSALEAVGLDSYVGFYHTDRPGRASLALDLVEEFRSYIVDRFVFSLVNKGQLNKRHFDIKENSSVILTEKGRTIFIESWQKRKHTVVEHPFTKEKVKLMLLPYVQAQLLSKAIRGDLESYPPFLI
>NZ_ALSM01000025.1|WP_000262367.1|108836_109508_-|CRISPR-associated-protein-Cas4
MVYAEDDYLMLSGIQHFQFCKRQWALIHIEQQWLDNEATAHGQILHTKADNPYIKEKRKDFLVSRAMHVSSKILGLYGILDVVEFYKDENGFSLKGKRGKWLPCIVEYKRGKPKKDRRDIVQLVAQTICLEETFGCYIEKGCLYYHSVNQKKTIEITEELRQEVLDLAEQMHFYYDNKIIGKAEYFKNCPLCSLVDICKPRLSKKTRNVDNYIRQSLVNEDSL
>NZ_ALSM01000025.1|WP_000889456.1|109509_110358_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MLEHKIDFIVTFEVKEANANGDPLNGNMPRTDAKGYGVMSDVSIKRKIRNRLQDMGKPIFVQANERIEDDFRSLEKRFSQHFTAKTPDKEIEEKANALWFDVRAFGQVFTYLKKSIGVRGPISISMAKSLEPIVISSLQITRSTNGMEAKNNSGRSSDTMGTKHFVDYGIYVLKGSINAYFAEKTGFSQEDAEAIKEVLVSLFENDASSARPEGSMRVREVFWFTHSSKLGNVSSARVFDLLEYNQSIEEKSTYDAYQIHLNQEKLAKYEAKGLTVKILEGL
>NZ_ALSM01000025.1|WP_000345444.1|110362_112258_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MDFFTSLLKTYEKAELADLVDHQKRNNEPVLLPIYHTSLKSNGKNIISVKLDKDGQFHKAEFMTDKQMIIFPVTADSVARSGSNPAPHPLVDKFAYYSAEMGQSQYDSFHKQLNNWIDYCEEGDVKRFLTIVQQFILKPEFLTLILDSLIGPDYQNNQLKVTFCDATGKEKLIDLSACFLEFSIDQFQGFKNESVSTFKTLHQSYISFVEANRENLGICNISGREEQLTDKHRGLMGNAKIISVSNKREAYKGRFREREDVFSVGYETSEKIHLMIKYLLENKNTSTWLGSSQYLINWFSDDLTNDSRLDIVSPIFDDGLEEDDDEDMPSVIALATEENKRIGKSFIKGQKLFANDATYYIAILNKTSNGRIALKYFRQIQASQLLTNLDKWQEKYSWESRSKSGKSRLRTPAFHDILNVSYGVDRDRFLELDNDNFKSDQVQKLVTSLIDGKPMPQSIVKKLGNNVKERHRYRKHWYQVEQVCLAILHKQNGEEFSPMLNHTNQNRSYLFGRLLAIFELIETLRYSLEGNGSDRITNAERYWTAYTGQPTKLMMLLENKIKPYEETLKLNRRGSWKKLEKEKEEILELLNPLLETETMEKPLDYRFIFGYYAEKNYYYPKQNTEVTESEE
>NZ_ALSM01000025.1|WP_032455446.1|112257_112986_-|type-I-C-CRISPR-associated-protein-Cas5
MYRSRDFYVRVSGQRALFTNPATKGGSERASYSVPTRQALNGIVDAIYYKPTFTNIVTEVKVINQIQTELQGVRALLHDYSADLSYVSYLSDVVYLIKFHFIWNEDRKDLNSDRLPAKHEAIMERSIRKGGRRDVFLGTRESVGLVDDISQEEYEAAVSYYNGVNIDLGIMFHSFAYPKDKKTPLKSYFTKTVMENGVITFKTQSDCDIVNTLSSYAFKVPGEIKSVNDEYMEYDAMEKGEN
>NZ_ALSM01000025.1|WP_000988351.1|113118_115542_-|CRISPR-associated-helicase/endonuclease-Cas3
MMTKETLAHYQKKIEQESEKKQSLDEHLWHVACFSRQEASIIGQGDVLFLISLYHDLGKADRAFQDKLLNNPNRHVDHSYAGAKYLCSIIGPHLKSRGVDKDERMTFNEMVGYVISAHHGMYDFCYCSDDAEYYSFNKFKNRINRDLDDYHYHEDIKGYAIKLEEKLCDYGYKDLRELIDKAFDNYQQAMSSLNWQDNSEWDYYQSCMVRLYLSLLKNADILDTVNAYGLEISPMDKTERSSLKHSYLAAIEQKYASFGRPNNQLNTIRTEIAERVKERGKRDSKGIYRLDLPTGAGKTNLSMRYAFHQLVHQDKSRFFYITPFLSVLEQNASEIRKVTGDLGVLEHHSNMVKQANEDDDKDSLLSAYLIDSWDSQVVLTSMVQFFQTLFKTKSANLRRFSSLINSVVILDEVQSLPIEVTTLFNLTMNFLNKVMDTTIVLCTATQPAYDSSEIDHRICYGGNLGELAEIVELTIEEKQIFSRTELRKFDDSDQKVYLTDVINLILGEENSVLAIFNTKKTVHNCYTMLKDMTDRPIYQLSTNMCAQHRLDLVAKIKTELQNNTPIICISTQLIEAGVDVDFHRVIRSYSGIDSIVQAAGRCNREGKRDKGQVTLVNLTNEEENISRLTEIKAKKEATESILYKIGSPINISTLNRDFFEYYYANNQGLMDYPLEDNISIYDYLSLNTYQTANKKFKGKLKQAFKTAGAKMNLINNDMIGILVPYGDAEKKLAYLEELGTSHFLSAEDYQTIKSLLKELQPFTVNVRENDPLLEATKSYLNGQILVLTSEYYDTERGVKYDSASFYF
>NZ_ALSM01000025.1|WP_000934859.1|116562_117342_+|hypothetical-protein
MLNSDFIISKSLANYIHHRRLEVGVSSTDLAEISNMSKSDWESFEKNGGAIPLKSKDIILDLLFLERFPKEKECDFIDKLFEEAKENKLWPEKIYQTMGLTPALSFIAGCEILSDDINNDLEELSKLPKESHLGQLDTSLLLSLLPQQFITKYDYEFVYKLSKVLAQYTSRNKVGSSYTAHNVIEEICLYLIAKESILYFESLDENSHLQLKELLDYNDEWPFDIFDDMDSYTFLYTDIYIEEDSPYHFKNWFVPQFYL
>NZ_ALSM01000025.1|WP_000032189.1|117559_120211_-|valine--tRNA-ligase
MSKELSPKYNPAEVEAGRYQTWLDQDVFKPSGDAEAKPYSIVIPPPNVTGKLHLGHAWDTTLQDIIIRQKRMQGFDTLWLPGMDHAGIATQAKVEERLREQGISRYDLGREKFLDKVWEWKDEYAATIKSQWGKMGLSVDYSRERFTLDEGLSKAVRKVFVDLYNRGWIYRGEFIINWDPAARTALSDIEVIHKDVEGAFYHMNYMLEDGSRALEVATTRPETMFGDVAVAVNPEDPRYKDLIGQNVILPIINKPIPIVADEHADPEFGTGVVKITPAHDPNDFAVGQRHNLPQVNVMNDDGTMNELADEFNGMDRFEARKAVVAKLESLGNLVKIEKMTHSVGHSERTGVVVEPRLSTQWFVKMDQLAKNAIANQDTEDKVEFYPPRFNDTFMSWMENVHDWVISRQLWWGHQIPAWYNVNGEMYVGEDAPEGDGWTQDEDVLDTWFSSALWPFSTMGWPDTEAADFKRYFPTSTLVTGYDIIFFWVSRMIFQSLEFTGRQPFSNVLIHGLIRDEEGRKMSKSLGNGIDPMDVIEKYGADALRWFLSNGSAPGQDVRFSYEKMDASWNFINKIWNISRYILMNNEGLTLDQARENVEKVVNSQVGNVTDRWILHNLNETVGKITENFDKFEFGVAGHILYNFIWEEFANWYVELTKEVLYSDNEDEKVVTRSVLLYTLDQILRLLHPIMPFVTEEIFGQYAEGSIVLASYPQVNATFENQTAHKGVESLKDLIRSVRNSRAEVNVAPSKPITILVKTSDSELESFFKDNSNYIKRFTNPETLEISSAIATPELAMSSVITGAEIFLPLADLLNVEEELARLEKELAKWQKELDMVGKKLSNERFVANAKPEVVQKEKDKQADYQAKYDATQERIVEMQKLVK
>NZ_ALSM01000025.1|WP_000997618.1|120232_120925_-|hypothetical-protein
MNDFFNWLITLYNDDKVAFVSLCLTLVFGFFSWLAQLKRNKQDDIRQAEQDEFNRLAQDELKEFQSFQKKFAEYQQKVSELQFNFESQENFKPYFEFSKTKSSTYVEEGKLIARICLTNVGRGTATKITTNPIDYDQDGNPMYFRTIPTKQTHAIYDYFSETFAIPNDSIFLSTTALEQTENQNHCIEFKIKFCDSSGRTYEQKFEFGYDNFLVRGINLKSVTYEPTLIK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_ALSM01000025_1	1.3\|107099\|35\|NZ_ALSM01000025\|CRT	107099-107133	35	MK448768	Streptococcus phage Javan47, complete genome	34297-34331	0	1.0
NZ_ALSM01000025_1	1.6\|107298\|35\|NZ_ALSM01000025\|CRT	107298-107332	35	MK448796	Streptococcus phage Javan53, complete genome	31059-31093	0	1.0
NZ_ALSM01000025_1	1.8\|107099\|33\|NZ_ALSM01000025\|CRISPRCasFinder	107099-107131	33	MK448768	Streptococcus phage Javan47, complete genome	34297-34329	0	1.0
NZ_ALSM01000025_1	1.11\|107298\|33\|NZ_ALSM01000025\|CRISPRCasFinder	107298-107330	33	MK448796	Streptococcus phage Javan53, complete genome	31059-31091	0	1.0
NZ_ALSM01000025_1	1.13\|107099\|34\|NZ_ALSM01000025\|PILER-CR	107099-107132	34	MK448768	Streptococcus phage Javan47, complete genome	34297-34330	0	1.0
NZ_ALSM01000025_1	1.16\|107298\|34\|NZ_ALSM01000025\|PILER-CR	107298-107331	34	MK448796	Streptococcus phage Javan53, complete genome	31059-31092	0	1.0
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_MG205643	Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence	72996-73027	5	0.844
NZ_ALSM01000025_1	1.9\|107166\|32\|NZ_ALSM01000025\|CRISPRCasFinder	107166-107197	32	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	180180-180211	5	0.844
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	548430-548461	6	0.812
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP038623	Arsenophonus nasoniae strain FIN plasmid pArsFIN11, complete sequence	39364-39395	6	0.812
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NC_017421	Borreliella burgdorferi N40 plasmid N40_lp38, complete sequence	28345-28376	6	0.812
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NC_001856	Borreliella burgdorferi B31 plasmid lp38, complete sequence	28055-28086	6	0.812
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP019853	Borreliella burgdorferi plasmid lp38, complete sequence	28068-28099	6	0.812
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP019764	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp38, complete sequence	28061-28092	6	0.812
NZ_ALSM01000025_1	1.4\|107166\|34\|NZ_ALSM01000025\|CRT	107166-107199	34	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	606095-606128	6	0.824
NZ_ALSM01000025_1	1.9\|107166\|32\|NZ_ALSM01000025\|CRISPRCasFinder	107166-107197	32	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	617393-617424	6	0.812
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	484591-484622	7	0.781
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	AP014284	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S23-C63, * SEQUENCING IN PROGRESS *	9262-9293	7	0.781
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	46517-46548	7	0.781
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	131643-131674	7	0.781
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	15273-15304	7	0.781
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	232837-232868	7	0.781
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	25057-25088	7	0.781
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	158727-158758	7	0.781
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	158558-158589	7	0.781
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	1638-1669	7	0.781
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NC_020380	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-16, complete sequence	13185-13216	7	0.781
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	MH517022	Acinetobacter phage SH-Ab 15599, complete genome	51037-51068	7	0.781
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	MK496784	Capybara microvirus Cap3_SP_414, complete genome	2372-2403	7	0.781
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	U72945	Virus-like particle CAK1 of Clostridium beijerinckii origin of replication region	829-860	7	0.781
NZ_ALSM01000025_1	1.14\|107166\|33\|NZ_ALSM01000025\|PILER-CR	107166-107198	33	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	617393-617425	7	0.788
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP029456	Bacillus cereus strain FORC087 plasmid pFORC087.2, complete sequence	61423-61454	8	0.75
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	70696-70727	8	0.75
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	CP016196	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-2, complete sequence	62259-62290	8	0.75
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP045061	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence	70700-70731	8	0.75
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP045054	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence	70707-70738	8	0.75
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP045058	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence	70706-70737	8	0.75
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	MH830339	Proteus phage Stubb, complete genome	26806-26837	8	0.75
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	MG030347	Proteus phage PM135, complete genome	76557-76588	8	0.75
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	MN935203	UNVERIFIED: Proteus phage VTCCBPA139, partial genome	26007-26038	8	0.75
NZ_ALSM01000025_1	1.2\|107033\|34\|NZ_ALSM01000025\|CRT	107033-107066	34	NZ_MH569712	Serratia marcescens strain S120 plasmid pPM120-2, complete sequence	42532-42565	8	0.765
NZ_ALSM01000025_1	1.4\|107166\|34\|NZ_ALSM01000025\|CRT	107166-107199	34	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	617393-617426	8	0.765
NZ_ALSM01000025_1	1.4\|107166\|34\|NZ_ALSM01000025\|CRT	107166-107199	34	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	378878-378911	8	0.765
NZ_ALSM01000025_1	1.4\|107166\|34\|NZ_ALSM01000025\|CRT	107166-107199	34	NC_015901	Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pVF22, complete sequence	18325-18358	8	0.765
NZ_ALSM01000025_1	1.14\|107166\|33\|NZ_ALSM01000025\|PILER-CR	107166-107198	33	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	378879-378911	8	0.758
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NC_007103	Bacillus cereus E33L plasmid pE33L466, complete sequence	93170-93201	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP009967	Bacillus cereus E33L plasmid pBCO_1, complete sequence	228972-229003	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_MG205643	Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence	9883-9914	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_AP017932	Lactobacillus sakei strain LK-145 plasmid pLs145-a, complete sequence	5632-5663	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP025208	Lactobacillus sakei strain WiKim0074 plasmid pLSW74_2, complete sequence	12385-12416	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP021933	Lactobacillus plantarum strain TMW 1.1478 plasmid pL11478-1, complete sequence	57054-57085	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP017376	Lactobacillus plantarum strain TMW 1.708 plasmid pL1708-2, complete sequence	17183-17214	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP021472	Pediococcus pentosaceus strain SRCM100892 plasmid pPC892-2, complete sequence	18052-18083	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP052067	Lactobacillus paracasei strain 347-16 plasmid unnamed2, complete sequence	1046-1077	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP031209	Lactobacillus brevis strain UCCLB521 plasmid pUCCLB521_A, complete sequence	42073-42104	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP035015	Lactobacillus plantarum strain 12_3 plasmid pldC, complete sequence	24116-24147	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NC_003383	Listeria innocua Clip11262 plasmid pLI100, complete sequence	34563-34594	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP048005	Lactobacillus paracasei strain CACC 566 plasmid p2CACC566, complete sequence	41814-41845	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP046038	Lactobacillus sakei strain CBA3614 plasmid unnamed1, complete sequence	31384-31415	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP017410	Lactobacillus plantarum strain RI-113 plasmid pRI113_4, complete sequence	12201-12232	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NC_016608	Pediococcus claussenii ATCC BAA-344 plasmid pPECL-5, complete sequence	15266-15297	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP029967	Lactobacillus curvatus strain ZJUNIT8 plasmid pnunamed1, complete sequence	42716-42747	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP028336	Lactobacillus plantarum strain SRCM101167 plasmid unnamed2, complete sequence	38185-38216	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP028231	Lactobacillus plantarum strain SRCM101222 plasmid unnamed2, complete sequence	3683-3714	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP018183	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-3, complete sequence	17219-17250	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	MH937473	Streptococcus phage CHPC929, complete genome	34811-34842	9	0.719
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NC_010353	Streptococcus phage 858, complete genome	33013-33044	9	0.719
NZ_ALSM01000025_1	1.4\|107166\|34\|NZ_ALSM01000025\|CRT	107166-107199	34	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	243737-243770	9	0.735
NZ_ALSM01000025_1	1.7\|107033\|32\|NZ_ALSM01000025\|CRISPRCasFinder	107033-107064	32	CP029330	Clostridium beijerinckii isolate WB53 plasmid unnamed1	3102-3133	9	0.719
NZ_ALSM01000025_1	1.7\|107033\|32\|NZ_ALSM01000025\|CRISPRCasFinder	107033-107064	32	CP029330	Clostridium beijerinckii isolate WB53 plasmid unnamed1	17601-17632	9	0.719
NZ_ALSM01000025_1	1.7\|107033\|32\|NZ_ALSM01000025\|CRISPRCasFinder	107033-107064	32	NZ_MH569712	Serratia marcescens strain S120 plasmid pPM120-2, complete sequence	42532-42563	9	0.719
NZ_ALSM01000025_1	1.7\|107033\|32\|NZ_ALSM01000025\|CRISPRCasFinder	107033-107064	32	NC_015916	Borreliella bissettii DN127 plasmid lp28-3, complete sequence	15065-15096	9	0.719
NZ_ALSM01000025_1	1.7\|107033\|32\|NZ_ALSM01000025\|CRISPRCasFinder	107033-107064	32	NZ_CP015806	Borrelia mayonii strain MN14-1539 plasmid lp28-3	19067-19098	9	0.719
NZ_ALSM01000025_1	1.7\|107033\|32\|NZ_ALSM01000025\|CRISPRCasFinder	107033-107064	32	NZ_CP015791	Borrelia mayonii strain MN14-1420 plasmid lp28-3, complete sequence	19067-19098	9	0.719
NZ_ALSM01000025_1	1.7\|107033\|32\|NZ_ALSM01000025\|CRISPRCasFinder	107033-107064	32	NZ_CP038639	Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence	357536-357567	9	0.719
NZ_ALSM01000025_1	1.9\|107166\|32\|NZ_ALSM01000025\|CRISPRCasFinder	107166-107197	32	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	243737-243768	9	0.719
NZ_ALSM01000025_1	1.9\|107166\|32\|NZ_ALSM01000025\|CRISPRCasFinder	107166-107197	32	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	378880-378911	9	0.719
NZ_ALSM01000025_1	1.9\|107166\|32\|NZ_ALSM01000025\|CRISPRCasFinder	107166-107197	32	MG945889	UNVERIFIED: Microviridae sp. isolate 1554-1801, partial genome	4926-4957	9	0.719
NZ_ALSM01000025_1	1.11\|107298\|33\|NZ_ALSM01000025\|CRISPRCasFinder	107298-107330	33	NZ_CP051683	Mucilaginibacter sp. F39-2 plasmid unnamed1, complete sequence	8254-8286	9	0.727
NZ_ALSM01000025_1	1.12\|107033\|33\|NZ_ALSM01000025\|PILER-CR	107033-107065	33	CP029330	Clostridium beijerinckii isolate WB53 plasmid unnamed1	3102-3134	9	0.727
NZ_ALSM01000025_1	1.12\|107033\|33\|NZ_ALSM01000025\|PILER-CR	107033-107065	33	CP029330	Clostridium beijerinckii isolate WB53 plasmid unnamed1	17601-17633	9	0.727
NZ_ALSM01000025_1	1.12\|107033\|33\|NZ_ALSM01000025\|PILER-CR	107033-107065	33	NZ_MH569712	Serratia marcescens strain S120 plasmid pPM120-2, complete sequence	42532-42564	9	0.727
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP015507	Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence	161310-161341	10	0.688
NZ_ALSM01000025_1	1.2\|107033\|34\|NZ_ALSM01000025\|CRT	107033-107066	34	CP029330	Clostridium beijerinckii isolate WB53 plasmid unnamed1	3102-3135	10	0.706
NZ_ALSM01000025_1	1.2\|107033\|34\|NZ_ALSM01000025\|CRT	107033-107066	34	CP029330	Clostridium beijerinckii isolate WB53 plasmid unnamed1	17601-17634	10	0.706
NZ_ALSM01000025_1	1.14\|107166\|33\|NZ_ALSM01000025\|PILER-CR	107166-107198	33	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	243737-243769	10	0.697
NZ_ALSM01000025_1	1.16\|107298\|34\|NZ_ALSM01000025\|PILER-CR	107298-107331	34	NZ_CP051683	Mucilaginibacter sp. F39-2 plasmid unnamed1, complete sequence	8253-8286	10	0.706
NZ_ALSM01000025_1	1.1\|106969\|32\|NZ_ALSM01000025\|CRT	106969-107000	32	NZ_CP031220	Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence	90370-90401	11	0.656
NZ_ALSM01000025_1	1.4\|107166\|34\|NZ_ALSM01000025\|CRT	107166-107199	34	NC_013792	Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequence	238853-238886	11	0.676

1. spacer 1.3|107099|35|NZ_ALSM01000025|CRT matches to MK448768 (Streptococcus phage Javan47, complete genome) position: , mismatch: 0, identity: 1.0

aaaacggatggttgtatattgcaggctatcagcta	CRISPR spacer
aaaacggatggttgtatattgcaggctatcagcta	Protospacer
***********************************

2. spacer 1.6|107298|35|NZ_ALSM01000025|CRT matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 0, identity: 1.0

gtcttttcagacagaacataaatggaaatatagta	CRISPR spacer
gtcttttcagacagaacataaatggaaatatagta	Protospacer
***********************************

3. spacer 1.8|107099|33|NZ_ALSM01000025|CRISPRCasFinder matches to MK448768 (Streptococcus phage Javan47, complete genome) position: , mismatch: 0, identity: 1.0

aaaacggatggttgtatattgcaggctatcagc	CRISPR spacer
aaaacggatggttgtatattgcaggctatcagc	Protospacer
*********************************

4. spacer 1.11|107298|33|NZ_ALSM01000025|CRISPRCasFinder matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 0, identity: 1.0

gtcttttcagacagaacataaatggaaatatag	CRISPR spacer
gtcttttcagacagaacataaatggaaatatag	Protospacer
*********************************

5. spacer 1.13|107099|34|NZ_ALSM01000025|PILER-CR matches to MK448768 (Streptococcus phage Javan47, complete genome) position: , mismatch: 0, identity: 1.0

aaaacggatggttgtatattgcaggctatcagct	CRISPR spacer
aaaacggatggttgtatattgcaggctatcagct	Protospacer
**********************************

6. spacer 1.16|107298|34|NZ_ALSM01000025|PILER-CR matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 0, identity: 1.0

gtcttttcagacagaacataaatggaaatatagt	CRISPR spacer
gtcttttcagacagaacataaatggaaatatagt	Protospacer
**********************************

7. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_MG205643 (Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence) position: , mismatch: 5, identity: 0.844

ataatgaattaataaaaaaataat-cattatta	CRISPR spacer
ataatgaatttatataaaaataatacagtttt-	Protospacer
********** *** ********* ** * **

8. spacer 1.9|107166|32|NZ_ALSM01000025|CRISPRCasFinder matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 5, identity: 0.844

ataattatggtagtctta-tttttaatataaaa	CRISPR spacer
ataattatggttgtattattttttcatataat-	Protospacer
*********** ** *** ***** ******

9. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aaaatttgctaataaaaaaataatcattaata	Protospacer
* ***  ..******************** **

10. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP038623 (Arsenophonus nasoniae strain FIN plasmid pArsFIN11, complete sequence) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
attatatgttaataactaaataatcattatta	Protospacer
** **. .*******  ***************

11. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NC_017421 (Borreliella burgdorferi N40 plasmid N40_lp38, complete sequence) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatca-ttatta	CRISPR spacer
ataatgaataactaaaaaaataaggaggtatt-	Protospacer
********* * ***********  *  ****

12. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NC_001856 (Borreliella burgdorferi B31 plasmid lp38, complete sequence) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatca-ttatta	CRISPR spacer
ataatgaataactaaaaaaataaggaggtatt-	Protospacer
********* * ***********  *  ****

13. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP019853 (Borreliella burgdorferi plasmid lp38, complete sequence) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatca-ttatta	CRISPR spacer
ataatgaataactaaaaaaataaggaggtatt-	Protospacer
********* * ***********  *  ****

14. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP019764 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp38, complete sequence) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatca-ttatta	CRISPR spacer
ataatgaataactaaaaaaataaggaggtatt-	Protospacer
********* * ***********  *  ****

15. spacer 1.4|107166|34|NZ_ALSM01000025|CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.824

-ataattatggtagtcttatttttaatataaaata	CRISPR spacer
cattcttat-ttattcttattttcaatataaaata	Protospacer
 **  ****  ** *********.***********

16. spacer 1.9|107166|32|NZ_ALSM01000025|CRISPRCasFinder matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 6, identity: 0.812

ataattatggtagtcttatttttaatataaaa	CRISPR spacer
acaaaaatgttagtcttatgtttaatataaac	Protospacer
*.**  *** ********* ***********

17. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 7, identity: 0.781

-ataatgaattaataaaaaaataatcattatta	CRISPR spacer
tataa-atattaataaaaaacaaatcattatct	Protospacer
 **** . ************  *********.

18. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to AP014284 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S23-C63, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
atccagaattaataaaaaaaaaattattagaa	Protospacer
**   *************** ***.****  *

19. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

20. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

21. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaagaaattttatact-	Protospacer
 ******************. ***. * **.*

22. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

23. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

24. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

25. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaagaaattttatact-	Protospacer
 ******************. ***. * **.*

26. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

27. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NC_020380 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-16, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcattatta--	CRISPR spacer
ataaataattaataaaaaaataa--aacactacg	Protospacer
****  *****************  * .*.**

28. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to MH517022 (Acinetobacter phage SH-Ab 15599, complete genome) position: , mismatch: 7, identity: 0.781

ataatgaat--taataaaaaaataatcattatta	CRISPR spacer
--gacgtattataatagaaaaataatcactatta	Protospacer
  .*.* **  *****.***********.*****

29. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to MK496784 (Capybara microvirus Cap3_SP_414, complete genome) position: , mismatch: 7, identity: 0.781

ataatg-aattaataaaaaaataatcattatta	CRISPR spacer
-tatcgtaattaataaaaaaatcattattacga	Protospacer
 ** .* *************** **.****. *

30. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to U72945 (Virus-like particle CAK1 of Clostridium beijerinckii origin of replication region) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcattatta-	CRISPR spacer
ttaaacaattaataaaaaaataatt-ttatgga	Protospacer
 ***  ******************. **** .

31. spacer 1.14|107166|33|NZ_ALSM01000025|PILER-CR matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 7, identity: 0.788

ataattatggtagtcttatttttaatataaaat	CRISPR spacer
acaaaaatgttagtcttatgtttaatataaaca	Protospacer
*.**  *** ********* ***********

32. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP029456 (Bacillus cereus strain FORC087 plasmid pFORC087.2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataat-cattatta	CRISPR spacer
gaaattaattaatagaaaaataatccaatgct-	Protospacer
. *** ********.********* ** *..*

33. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ttaataaattaatgaaaaaataatattaacaa	Protospacer
 ****.*******.**********  * *. *

34. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to CP016196 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ttaataaactaataaaaaaataataaaatata	Protospacer
 ****.**.*************** *    **

35. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ttaataaattaatgaaaaaataatattaacaa	Protospacer
 ****.*******.**********  * *. *

36. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ttaataaattaatgaaaaaataatattaacaa	Protospacer
 ****.*******.**********  * *. *

37. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ttaataaattaatgaaaaaataatattaacaa	Protospacer
 ****.*******.**********  * *. *

38. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to MH830339 (Proteus phage Stubb, complete genome) position: , mismatch: 8, identity: 0.75

ataatga-----attaataaaaaaataatcattatta	CRISPR spacer
-----gagcattattaataaataaataatcataataa	Protospacer
     **     ********* ********** ** *

39. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to MG030347 (Proteus phage PM135, complete genome) position: , mismatch: 8, identity: 0.75

ataatga-----attaataaaaaaataatcattatta	CRISPR spacer
-----gagcattattaataaataaataatcataataa	Protospacer
     **     ********* ********** ** *

40. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to MN935203 (UNVERIFIED: Proteus phage VTCCBPA139, partial genome) position: , mismatch: 8, identity: 0.75

ataatga-----attaataaaaaaataatcattatta	CRISPR spacer
-----gagcattattaataaataaataatcataataa	Protospacer
     **     ********* ********** ** *

41. spacer 1.2|107033|34|NZ_ALSM01000025|CRT matches to NZ_MH569712 (Serratia marcescens strain S120 plasmid pPM120-2, complete sequence) position: , mismatch: 8, identity: 0.765

gcgttgatatgaaaggaaattatag-agatatgat	CRISPR spacer
tcgttgatctaaaaggaaattatagcactcataa-	Protospacer
 ******* *.************** *  .**.*

42. spacer 1.4|107166|34|NZ_ALSM01000025|CRT matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 8, identity: 0.765

ataattatggtagtcttatttttaatataaaata	CRISPR spacer
acaaaaatgttagtcttatgtttaatataaacac	Protospacer
*.**  *** ********* ***********

43. spacer 1.4|107166|34|NZ_ALSM01000025|CRT matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 8, identity: 0.765

ataattatggtagtcttatttttaatataaaata-	CRISPR spacer
aaaattaaagtagtcttatttttaat-cattttac	Protospacer
* ***** .***************** .*   **

44. spacer 1.4|107166|34|NZ_ALSM01000025|CRT matches to NC_015901 (Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pVF22, complete sequence) position: , mismatch: 8, identity: 0.765

ataattatggtagtcttatttttaatataaaata	CRISPR spacer
taatttctattattctaatttttaatataaaata	Protospacer
  * ** *. ** *** *****************

45. spacer 1.14|107166|33|NZ_ALSM01000025|PILER-CR matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 8, identity: 0.758

ataattatggtagtcttatttttaatataaaat----	CRISPR spacer
aaaattaaagtagtcttatttttaat----catttta	Protospacer
* ***** .*****************     **

46. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ataatgaatttataaaaaaataaatttaggag	Protospacer
********** ************ . * .  .

47. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP009967 (Bacillus cereus E33L plasmid pBCO_1, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ataatgaatttataaaaaaataaatttaggag	Protospacer
********** ************ . * .  .

48. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_MG205643 (Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
caaaactattaatataaaagtaatcattatct	Protospacer
  **   ******* ****.**********.

49. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_AP017932 (Lactobacillus sakei strain LK-145 plasmid pLs145-a, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

50. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP025208 (Lactobacillus sakei strain WiKim0074 plasmid pLSW74_2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

51. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP021933 (Lactobacillus plantarum strain TMW 1.1478 plasmid pL11478-1, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

52. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP017376 (Lactobacillus plantarum strain TMW 1.708 plasmid pL1708-2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

53. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP021472 (Pediococcus pentosaceus strain SRCM100892 plasmid pPC892-2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

54. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP052067 (Lactobacillus paracasei strain 347-16 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

55. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP031209 (Lactobacillus brevis strain UCCLB521 plasmid pUCCLB521_A, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

56. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP035015 (Lactobacillus plantarum strain 12_3 plasmid pldC, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

57. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NC_003383 (Listeria innocua Clip11262 plasmid pLI100, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaat-taataaaaaaataatcattatta	CRISPR spacer
-tggcaggtgtaacaaaaaaattatcattatta	Protospacer
 *......* ***.******** **********

58. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP048005 (Lactobacillus paracasei strain CACC 566 plasmid p2CACC566, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

59. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP046038 (Lactobacillus sakei strain CBA3614 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

60. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP017410 (Lactobacillus plantarum strain RI-113 plasmid pRI113_4, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

61. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NC_016608 (Pediococcus claussenii ATCC BAA-344 plasmid pPECL-5, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

62. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP029967 (Lactobacillus curvatus strain ZJUNIT8 plasmid pnunamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

63. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP028336 (Lactobacillus plantarum strain SRCM101167 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

64. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP028231 (Lactobacillus plantarum strain SRCM101222 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

65. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP018183 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-3, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

66. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to MH937473 (Streptococcus phage CHPC929, complete genome) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
atattgaattaataaaaaagtaagtaagtaaa	Protospacer
*** ***************.*** .*     *

67. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NC_010353 (Streptococcus phage 858, complete genome) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
atattgaattaataaaaaagtaagtaagtaaa	Protospacer
*** ***************.*** .*     *

68. spacer 1.4|107166|34|NZ_ALSM01000025|CRT matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 9, identity: 0.735

ataattatggtagtcttatttttaa------tataaaata	CRISPR spacer
ttaattattgtagtattatttttaaagtgtttat------	Protospacer
 ******* ***** **********      ***

69. spacer 1.7|107033|32|NZ_ALSM01000025|CRISPRCasFinder matches to CP029330 (Clostridium beijerinckii isolate WB53 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

gcgttgatatgaaaggaaattatagagatatg	CRISPR spacer
caaactatatgaaagaaaattataaagatata	Protospacer
  . . *********.********.******.

70. spacer 1.7|107033|32|NZ_ALSM01000025|CRISPRCasFinder matches to CP029330 (Clostridium beijerinckii isolate WB53 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

gcgttgatatgaaaggaaattatagagatatg	CRISPR spacer
caaactatatgaaagaaaattataaagatata	Protospacer
  . . *********.********.******.

71. spacer 1.7|107033|32|NZ_ALSM01000025|CRISPRCasFinder matches to NZ_MH569712 (Serratia marcescens strain S120 plasmid pPM120-2, complete sequence) position: , mismatch: 9, identity: 0.719

gcgttgatatgaaaggaaattatagagatatg	CRISPR spacer
tcgttgatctaaaaggaaattatagcactcat	Protospacer
 ******* *.************** . *

72. spacer 1.7|107033|32|NZ_ALSM01000025|CRISPRCasFinder matches to NC_015916 (Borreliella bissettii DN127 plasmid lp28-3, complete sequence) position: , mismatch: 9, identity: 0.719

gcgttgatatgaaaggaaattatagagatatg	CRISPR spacer
aaaatgggatgagagggaattatagagatata	Protospacer
. . **. ****.***.**************.

73. spacer 1.7|107033|32|NZ_ALSM01000025|CRISPRCasFinder matches to NZ_CP015806 (Borrelia mayonii strain MN14-1539 plasmid lp28-3) position: , mismatch: 9, identity: 0.719

gcgttgatatgaaaggaaattatagagatatg	CRISPR spacer
aaaatgggatgagagggaattatagagatata	Protospacer
. . **. ****.***.**************.

74. spacer 1.7|107033|32|NZ_ALSM01000025|CRISPRCasFinder matches to NZ_CP015791 (Borrelia mayonii strain MN14-1420 plasmid lp28-3, complete sequence) position: , mismatch: 9, identity: 0.719

gcgttgatatgaaaggaaattatagagatatg	CRISPR spacer
aaaatgggatgagagggaattatagagatata	Protospacer
. . **. ****.***.**************.

75. spacer 1.7|107033|32|NZ_ALSM01000025|CRISPRCasFinder matches to NZ_CP038639 (Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

gcgttgatatgaaaggaaattatagagatatg	CRISPR spacer
acggcctgctgaaaggaaatcatagagaaatg	Protospacer
.** .    ***********.******* ***

76. spacer 1.9|107166|32|NZ_ALSM01000025|CRISPRCasFinder matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 9, identity: 0.719

ataattatggtagtcttatttttaatataaaa	CRISPR spacer
ttaattattgtagtattatttttaaagtgttt	Protospacer
 ******* ***** ********** .*.

77. spacer 1.9|107166|32|NZ_ALSM01000025|CRISPRCasFinder matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 9, identity: 0.719

ataattatggtagtcttatttttaatataaaa	CRISPR spacer
aaaattaaagtagtcttatttttaatcatttt	Protospacer
* ***** .*****************

78. spacer 1.9|107166|32|NZ_ALSM01000025|CRISPRCasFinder matches to MG945889 (UNVERIFIED: Microviridae sp. isolate 1554-1801, partial genome) position: , mismatch: 9, identity: 0.719

ataattatggtagtcttatttttaatataaaa	CRISPR spacer
atgggccgggtacacttatttttaatataaat	Protospacer
**.. .  ****  *****************

79. spacer 1.11|107298|33|NZ_ALSM01000025|CRISPRCasFinder matches to NZ_CP051683 (Mucilaginibacter sp. F39-2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

gtcttttcagacagaacataaatggaaatatag	CRISPR spacer
aacaatttaaacagaacataaatggaaatgaac	Protospacer
. *  **.*.*******************. *

80. spacer 1.12|107033|33|NZ_ALSM01000025|PILER-CR matches to CP029330 (Clostridium beijerinckii isolate WB53 plasmid unnamed1) position: , mismatch: 9, identity: 0.727

gcgttgatatgaaaggaaattatagagatatga	CRISPR spacer
caaactatatgaaagaaaattataaagatataa	Protospacer
  . . *********.********.******.*

81. spacer 1.12|107033|33|NZ_ALSM01000025|PILER-CR matches to CP029330 (Clostridium beijerinckii isolate WB53 plasmid unnamed1) position: , mismatch: 9, identity: 0.727

gcgttgatatgaaaggaaattatagagatatga	CRISPR spacer
caaactatatgaaagaaaattataaagatataa	Protospacer
  . . *********.********.******.*

82. spacer 1.12|107033|33|NZ_ALSM01000025|PILER-CR matches to NZ_MH569712 (Serratia marcescens strain S120 plasmid pPM120-2, complete sequence) position: , mismatch: 9, identity: 0.727

gcgttgatatgaaaggaaattatagagatatga	CRISPR spacer
tcgttgatctaaaaggaaattatagcactcata	Protospacer
 ******* *.************** . *   *

83. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP015507 (Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence) position: , mismatch: 10, identity: 0.688

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
gaaatgaataaatgaaaaaataatctaccctt	Protospacer
. ******* ***.***********  . .*

84. spacer 1.2|107033|34|NZ_ALSM01000025|CRT matches to CP029330 (Clostridium beijerinckii isolate WB53 plasmid unnamed1) position: , mismatch: 10, identity: 0.706

gcgttgatatgaaaggaaattatagagatatgat	CRISPR spacer
caaactatatgaaagaaaattataaagatataag	Protospacer
  . . *********.********.******.*

85. spacer 1.2|107033|34|NZ_ALSM01000025|CRT matches to CP029330 (Clostridium beijerinckii isolate WB53 plasmid unnamed1) position: , mismatch: 10, identity: 0.706

gcgttgatatgaaaggaaattatagagatatgat	CRISPR spacer
caaactatatgaaagaaaattataaagatataag	Protospacer
  . . *********.********.******.*

86. spacer 1.14|107166|33|NZ_ALSM01000025|PILER-CR matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 10, identity: 0.697

ataattatggtagtcttatttttaatataaaat	CRISPR spacer
ttaattattgtagtattatttttaaagtgttta	Protospacer
 ******* ***** ********** .*.

87. spacer 1.16|107298|34|NZ_ALSM01000025|PILER-CR matches to NZ_CP051683 (Mucilaginibacter sp. F39-2 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

gtcttttcagacagaacataaatggaaatatagt	CRISPR spacer
aacaatttaaacagaacataaatggaaatgaaca	Protospacer
. *  **.*.*******************. *

88. spacer 1.1|106969|32|NZ_ALSM01000025|CRT matches to NZ_CP031220 (Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence) position: , mismatch: 11, identity: 0.656

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
tagatgaattaataaataaatattcaaatggg	Protospacer
  .************* ***** ***     .

89. spacer 1.4|107166|34|NZ_ALSM01000025|CRT matches to NC_013792 (Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequence) position: , mismatch: 11, identity: 0.676

ataattatggtagtcttatttttaatataaaata	CRISPR spacer
ttttcaccactaattttatttttaatataaaata	Protospacer
 *  .  .. **.*.*******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6275 : 13829

Streptococcus_phage(50.0%)

integrase,transposase

attL 9205:9218|attR 14697:14710

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000353149.1\|6275_6932_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-22	31.8
WP_000594360.1\|6941_8219_-	ABC transporter permease	NA	NA	NA	NA
WP_000508795.1\|8960_9122_+	NINE protein	NA	NA	NA	NA
9205:9218	attL	NA	NA	NA	NA
WP_001867107.1\|9294_9504_-\|transposase	transposase	NA	NA	NA	NA
WP_001872364.1\|9629_9887_-\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	5.8e-11	43.5
WP_001122304.1\|9911_10112_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_000640620.1\|10273_10678_-	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	1.3e-20	43.6
WP_001872365.1\|10677_10944_+	hypothetical protein	Q77YW7	Streptococcus_phage	9.2e-20	65.2
WP_071659971.1\|10946_11561_+\|integrase	site-specific integrase	F8HGP4	Streptococcus_phage	9.2e-55	60.7
WP_001068667.1\|11705_12053_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000595708.1\|12632_13829_-	voltage-gated chloride channel family protein	A0A1X9I5Z9	Streptococcus_phage	4.6e-103	54.5
14697:14710	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_ALSM01000014

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

42284 : 54349

Gordonia_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000783424.1\|42284_43589_-	LysM peptidoglycan-binding domain-containing protein	A0A0E3XB61	Gordonia_phage	4.6e-11	36.0
WP_001045908.1\|43735_44635_-	peptidoglycan DD-metalloendopeptidase family protein	A0A221J6U0	Arthrobacter_phage	4.1e-19	45.9
WP_000166558.1\|44827_46375_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	4.4e-45	52.9
WP_000780020.1\|46394_47147_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000685111.1\|47166_47718_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.8e-25	35.6
WP_001291325.1\|47885_48908_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	9.6e-65	44.6
WP_000220672.1\|48935_50390_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.3e-54	32.5
WP_001042263.1\|50623_54349_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.6e-40	27.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_ALSM01000007

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr_ID: NZ_ALSM01000007.1|WP_000384271.1|15629_15956_-|replication-initiator-protein-A

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_ALSM01000007.1|WP_000384271.1|15629_15956_-|replication-initiator-protein-A

15629_15956_-

108 aa aa

AcrIIA21

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3639\|WP_000384271.1\|AcrIIA21\|II-A\|Verified\|Streptococcus	1.0	1	1.0

4. NZ_ALSM01000018

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

66240 : 81916

Streptococcus_phage(64.29%)

integrase

attL 65387:65406|attR 79319:79338

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
65387:65406	attL	NA	NA	NA	NA
WP_060474137.1\|66240_66618_-	DUF1492 domain-containing protein	A0A1L2JXS9	Streptococcus_phage	1.0e-08	37.4
WP_000500997.1\|66592_66955_-	DUF1492 domain-containing protein	NA	NA	NA	NA
WP_000661535.1\|67352_67841_-	hypothetical protein	A0A1X9I5V2	Streptococcus_phage	1.2e-46	56.2
WP_001258774.1\|67925_68531_-	hypothetical protein	A0A1X9I5U4	Streptococcus_phage	7.0e-39	46.8
WP_000694577.1\|68714_68888_-	hypothetical protein	A0A1X9I5U0	Streptococcus_phage	1.9e-10	59.6
WP_000838178.1\|69147_70650_-	DNA primase family protein	Q9AZI5	Lactococcus_phage	2.7e-63	37.2
WP_001029298.1\|70669_71527_-	primase C-terminal domain-containing protein	A0A1X9I6L2	Streptococcus_phage	4.3e-119	72.0
WP_000492120.1\|71527_71800_-	hypothetical protein	A0A1X9I5U9	Streptococcus_phage	2.5e-28	69.8
WP_000174504.1\|71792_72134_-	hypothetical protein	NA	NA	NA	NA
WP_000206024.1\|72130_72493_-	hypothetical protein	NA	NA	NA	NA
WP_001007346.1\|72504_72702_-	hypothetical protein	NA	NA	NA	NA
WP_017644535.1\|72682_72823_-	hypothetical protein	NA	NA	NA	NA
WP_000877492.1\|72819_73152_-	hypothetical protein	NA	NA	NA	NA
WP_000648621.1\|73406_73649_-	hypothetical protein	NA	NA	NA	NA
WP_000845516.1\|73675_74296_-	phage repressor protein	A0A1W6JPC3	Staphylococcus_phage	1.4e-39	42.3
WP_017644534.1\|74349_74511_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000906796.1\|74676_75369_+	helix-turn-helix transcriptional regulator	A0A0P0IV68	Lactobacillus_phage	4.3e-08	49.2
WP_001137532.1\|75473_75683_+	TM2 domain-containing protein	M4ZS56	Bacillus_phage	4.9e-08	55.8
WP_000876115.1\|76178_76364_+	hypothetical protein	NA	NA	NA	NA
WP_000350953.1\|76375_76717_+	hypothetical protein	A0A1S5SDB5	Streptococcus_phage	2.2e-13	59.7
WP_000429449.1\|76743_77709_+	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	7.1e-86	51.1
WP_011324955.1\|78047_79214_+\|integrase	site-specific integrase	A0A1X9I5Y5	Streptococcus_phage	3.3e-154	70.4
WP_000092759.1\|79320_79932_-	30S ribosomal protein S4	NA	NA	NA	NA
79319:79338	attR	NA	NA	NA	NA
WP_001278152.1\|80261_80549_-	Veg family protein	NA	NA	NA	NA
WP_000852645.1\|80560_81916_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.2e-152	62.6

DBSCAN-SWA_2

90236 : 97440

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001042661.1\|90236_90941_-	transglycosylase SLT domain-containing protein	A0A2H4J6C5	uncultured_Caudovirales_phage	3.2e-27	56.6
WP_000029067.1\|91046_91586_-	LysM peptidoglycan-binding domain-containing protein	A0A249XZV3	Enterococcus_phage	3.0e-17	46.4
WP_000359358.1\|91801_92596_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_000510606.1\|92588_93431_-	energy-coupling factor transporter ATPase	W6JKT0	Anomala_cuprea_entomopoxvirus	2.5e-18	25.5
WP_000181757.1\|93406_94246_-	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	3.5e-20	30.0
WP_000239224.1\|94245_94788_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_000217765.1\|94910_96194_-	insulinase family protein	A0A2K9V7S4	Bandra_megavirus	1.6e-21	33.3
WP_000706190.1\|96195_97440_-	insulinase family protein	A0A1X9I714	Streptococcus_phage	1.7e-87	41.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_ALSM01000023

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

102041 : 111029

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000998734.1\|102041_102638_+	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	3.7e-16	29.4
WP_000575546.1\|102729_103986_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	7.8e-93	51.7
WP_000968655.1\|103990_104968_+	nucleoid-associated protein	NA	NA	NA	NA
WP_000472259.1\|104969_105572_+	lysozyme family protein	A0A223LKM8	Bacillus_phage	1.1e-20	40.1
WP_000826945.1\|105583_107302_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.8e-40	26.7
WP_000647647.1\|107302_109036_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.0e-50	31.2
WP_000746856.1\|109049_109247_+	hypothetical protein	NA	NA	NA	NA
WP_000222544.1\|109310_111029_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.4e-278	84.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_ALSM01000016

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

84889 : 95161

Streptococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000638895.1\|84889_86035_-	cysteine desulfurase	A0A1X6WFP1	Pacmanvirus	9.5e-29	28.4
WP_000033715.1\|86281_86734_+	hypothetical protein	NA	NA	NA	NA
WP_000043884.1\|86776_88126_-	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	1.3e-32	25.5
WP_000024629.1\|88300_88636_-	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	1.5e-19	39.4
WP_001269904.1\|88719_89886_-	chorismate synthase	A0A291AU41	Pandoravirus	7.1e-40	34.4
WP_001195725.1\|89886_90954_-	3-dehydroquinate synthase	NA	NA	NA	NA
WP_000707048.1\|91047_91725_-	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	5.3e-88	68.4
WP_001037599.1\|91724_92882_-	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	6.0e-140	65.7
WP_000721255.1\|93016_95161_+	LTA synthase family protein	W6LM83	Streptococcus_phage	1.4e-259	67.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_ALSM01000019

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CRISPR-Cas detection and classification

Crispr_ID: NZ_ALSM01000019_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_ALSM01000019_1

135782-136146

TypeII

II-A

Consensus_repeat	Method
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	PILER-CR
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CRT

5 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_ALSM01000019_1

>merge|NZ_ALSM01000019|1|135782-136146|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTACCTACGAAGACTATAATTTCGAAACAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGTCGAAAAAGATGACTTCTATTACTGGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAATGAAGATATTCTAGCTCGTGTAAAAATAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGAAAAAATCAAAGAATTGTGCAAACAGCGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCA

>NZ_ALSM01000019|1|1|135782-136080|PILER-CR
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TACCTACGAAGACTATAATTTCGAAACAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGTCGAAAAAGATGACTTCTATTACTGG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AATGAAGATATTCTAGCTCGTGTAAAAATA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGAAAAAATCAAAGAATTGTGCAAACAGCG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

>NZ_ALSM01000019|1|1|135782-136080|CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TACCTACGAAGACTATAATTTCGAAACAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGTCGAAAAAGATGACTTCTATTACTGG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AATGAAGATATTCTAGCTCGTGTAAAAATA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGAAAAAATCAAAGAATTGTGCAAACAGCG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

>NZ_ALSM01000019|1|1|135782-136146|CRT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TACCTACGAAGACTATAATTTCGAAACAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGTCGAAAAAGATGACTTCTATTACTGG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AATGAAGATATTCTAGCTCGTGTAAAAATA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGAAAAAATCAAAGAATTGTGCAAACAGCG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATCTTCTTTTGACCTAACAAAAGGATATGT
GTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_ALSM01000019.1\|WP_000523795.1\|127165_127903_+\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
NZ_ALSM01000019.1\|WP_000621142.1\|142734_143199_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_ALSM01000019.1\|WP_000665410.1\|143198_143633_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NZ_ALSM01000019.1\|WP_001056394.1\|149149_149761_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_ALSM01000019.1\|WP_000146566.1\|147800_148439_-\|CatB-related-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
NZ_ALSM01000019.1\|WP_000590706.1\|135015_135681_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	pfam09711_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_ALSM01000019.1\|WP_001040088.1\|129707_133820_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NZ_ALSM01000019.1\|WP_000438314.1\|136703_137120_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_ALSM01000019.1\|WP_000159234.1\|125163_125535_+\|YbgA-family-protein	unknown	unknown	gnl\|CDD\|377982
NZ_ALSM01000019.1\|WP_000653357.1\|128663_129320_+\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884
NZ_ALSM01000019.1\|WP_001241816.1\|125559_125940_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131381
NZ_ALSM01000019.1\|WP_000065321.1\|146576_147680_+\|DUF2974-domain-containing-protein	unknown	unknown	gnl\|CDD\|371412
NZ_ALSM01000019.1\|WP_000180007.1\|142066_142726_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224336
NZ_ALSM01000019.1\|WP_000323544.1\|127903_128674_+\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_ALSM01000019.1\|WP_001019133.1\|137255_139088_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_ALSM01000019.1\|WP_000168898.1\|143784_146577_+\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|223550
NZ_ALSM01000019.1\|WP_000122194.1\|134687_135029_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_ALSM01000019.1\|WP_000929489.1\|133821_134691_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_ALSM01000019.1\|WP_000914664.1\|126031_127162_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NZ_ALSM01000019.1\|WP_029663839.1\|139348_141967_+\|pneumococcal-type-histidine-triad-protein	unknown	unknown	gnl\|CDD\|275380

Protein	Function_ID	Function_description	E-value
NZ_ALSM01000019.1\|WP_000523795.1\|127165_127903_+\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	3.68196e-111
NZ_ALSM01000019.1\|WP_000621142.1\|142734_143199_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.91796e-19
NZ_ALSM01000019.1\|WP_000665410.1\|143198_143633_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	6.40832e-86
NZ_ALSM01000019.1\|WP_001056394.1\|149149_149761_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	6.1265e-31
NZ_ALSM01000019.1\|WP_000146566.1\|147800_148439_-\|CatB-related-O-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	9.50556e-71
NZ_ALSM01000019.1\|WP_000590706.1\|135015_135681_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.61399e-122
NZ_ALSM01000019.1\|WP_001040088.1\|129707_133820_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	0
NZ_ALSM01000019.1\|WP_000438314.1\|136703_137120_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	4.64422e-78
NZ_ALSM01000019.1\|WP_000159234.1\|125163_125535_+\|YbgA-family-protein	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	6.08694e-28
NZ_ALSM01000019.1\|WP_000653357.1\|128663_129320_+\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	9.75792e-52
NZ_ALSM01000019.1\|WP_001241816.1\|125559_125940_+\|hypothetical-protein	gnl\|CDD\|131381	TIGR02328, TIGR02328, conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown. [Hypothetical proteins, Conserved].	6.45558e-80
NZ_ALSM01000019.1\|WP_000065321.1\|146576_147680_+\|DUF2974-domain-containing-protein	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	1.82724e-105
NZ_ALSM01000019.1\|WP_000180007.1\|142066_142726_+\|HD-domain-containing-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	2.66997e-33
NZ_ALSM01000019.1\|WP_000323544.1\|127903_128674_+\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.19143e-132
NZ_ALSM01000019.1\|WP_001019133.1\|137255_139088_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_ALSM01000019.1\|WP_000168898.1\|143784_146577_+\|cation-transporting-P-type-ATPase	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NZ_ALSM01000019.1\|WP_000122194.1\|134687_135029_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.38084e-52
NZ_ALSM01000019.1\|WP_000929489.1\|133821_134691_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.54315e-139
NZ_ALSM01000019.1\|WP_000914664.1\|126031_127162_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NZ_ALSM01000019.1\|WP_029663839.1\|139348_141967_+\|pneumococcal-type-histidine-triad-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	5.6742e-22

>NZ_ALSM01000019.1|WP_000590706.1|135015_135681_+|type-II-A-CRISPR-associated-protein-Csn2
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
>NZ_ALSM01000019.1|WP_000122194.1|134687_135029_+|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNTANNAMIGRLKVNNPKKGNITLLTVTEKQFARMVYLHGERNTSVANSDSRLVFLGDSYDQD
>NZ_ALSM01000019.1|WP_000929489.1|133821_134691_+|type-II-CRISPR-associated-endonuclease-Cas1
MAGWRTVVVNTHSKLSYKNNHLIFKDSYQTEMIHLSEIDILIMETTDIVLSTMLIKRLVDENILVIFCDDKRLPTAMLMPYYARHDSSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLGECSFFEKSQSIMNLYHDLEPFDPSNREGHAARIYFNTLFGNDFSREQDNPINAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIIYENRQSDFVKMKRELFSMFSETYSYNGKEMYLSNIVSDYTKKVIKSLNSDGNGIPEFRI
>NZ_ALSM01000019.1|WP_001040088.1|129707_133820_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNKPYSIGLDIGTNSVGWSIITDDYKVPAKKMRVLGNTDKEYIKKNLIGALLFDGGNTAADRRLKRTARRRYTRRRNRILYLQEIFAEEMSKVDDSFFHRLEDSFLVEEDKRGSKYPIFATLQEEKDYHEKFSTIYHLRKELADKKEKADLRLIYIALAHIIKFRGHFLIEDDSFDVRNTDISKQYQDFLEIFNTTFENNDLLSQNVDVEAILTDKISKSAKKDRILAQYPNQKSTGIFAEFLKLIVGNQADFKKYFNLEDKTPLQFAKDSYDEDLENLLGQIGDEFADLFSAAKKLYDSVLLSGILTVIDLSTKAPLSASMIQRYDEHREDLKQLKQFVKASLPEKYQEIFADSSKDGYAGYIEGKTNQEAFYKYLSKLLTKQEDSENFLEKIKNEDFLRKQRTFDNGSIPHQVHLTELKAIIRRQSEYYPFLKENQDRIEKILTFRIPYYIGPLAREKSDFAWMTRKTDDSIRPWNFEDLVDKEKSAEAFIHRMTNNDFYLPEEKVLPKHSLIYEKFTVYNELTKVRYKNEQGETYFFDSNIKQEIFDGVFKEHRKVSKKKLLDFLAKEYEEFRIVDVIGLDKENKAFNASLGTYHDLEKILDKDFLDNPDNESILEDIVQTLTLFEDREMIKKRLENYKDLFTESQLKKLYRRHYTGWGRLSAKLINGIRDKESQKTILDYLIDDGRSNRNFMQLINDDGLSFKSIISKAQAGSHSDNLKEVVGELAGSPAIKKGILQSLKIVDELVKVMGYEPEQIVVEMARENQTTNQGRRNSRQRYKLLDDGVKNLASDLNGNILKEYPTDNQALQNERLFLYYLQNGRDMYTGEALDIDNLSQYDIDHIIPQAFIKDDSIDNRVLVSSAKNRGKSDDVPSLEIVKDCKVFWKKLLDAKLMSQRKYDNLTKAERGGLTSDDKARFIQRQLVETRQITKHVARILDERFNNELDSKGRRIRKVKIVTLKSNLVSNFRKEFGFYKIREVNNYHHAHDAYLNAVVAKAILTKYPQLEPEFVYGDYPKYNSYKTRKSATEKLFFYSNIMNFFKTKVTLADGTVVVKDDIEVNNDTGEIVWDKKKHFATVRKVLSYPQNNIVKKTEIQTGGFSKESILAHGNSDKLIPRKTKDIYLDPKKYGGFDSPIVAYSVLVVADIKKGKAQKLKTVTELLGITIMERSRFEKNPSAFLESKGYLNIRADKLIILPKYSLFELENGRRRLLASAGELQKGNELALPTQFMKFLYLASRYNESKGKPEEIEKKQEFVNQHVSYFDDILQLINDFSKRVILADANLEKINKLYQDNKENISVDELANNIINLFTFTSLGAPAAFKFFDKIVDRKRYTSTKEVLNSTLIHQSITGLYETRIDLGKLGGD
>NZ_ALSM01000019.1|WP_000653357.1|128663_129320_+|TIGR01906-family-membrane-protein
MKDKLLVVLTWIWIISLATLATIYIAWLIYPIEIQFLKLEKVVYLKAETIYYNFNKLMIYLTHPFISDLNMPSFPSSEDGLKHFADVKYLFTLAHGLFVILTFPVIYFLRRGWKQKSIFLYEGFFKIAIMLPIFIVVCAFLLGFDQFFTLFHEVLFPGDSTWQFNPLTDPVIWILPETFFLHCFIIFLLIYETITIILLIIGRKHLKLRKYKNKMQAL
>NZ_ALSM01000019.1|WP_000323544.1|127903_128674_+|TIGR01457-family-HAD-type-hydrolase
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
>NZ_ALSM01000019.1|WP_000523795.1|127165_127903_+|acyl-ACP-thioesterase
MGLLYRETYEVPFYESDTNHYMKLPQLLALALQISAKQSLKLGIGDDIVFKRYGLVWVVTDYIIDIERLPKHAEKIVIETEAKAHNKLLCYRYFYIYGEDGQKIITISSAFVLMDFKTRKIHPVLDDITSIYQSQRIKKVIRGPKYHPIGDSKVKQYHVRYFDLDMNGHVNNSKYLEWMYDVLDLDFLSSHIPKKIDLKYIKEIQYGTDIKSHWYQDGLVTRHDIIGGDAIHAQARIEWQEKKED
>NZ_ALSM01000019.1|WP_000914664.1|126031_127162_+|oxygen-independent-coproporphyrinogen-III-oxidase
MLKKPTSAYVHIPFCTQICYYCDFSKVFIKNQPVDAYLQALIREFRSYDITELRTLYIGGGTPTSISAVQLDYLLTELSRDLNLNTLEEFTIEANPGDLTVDKIEVLQKSAVNRVSLGVQTFNDKHLKRIGRSHNEAQIYSTIDALKTAGFQNISIDLIYALPGQTMDDVRSNVAKALSLNIPHLSLYSLILEHHTVFMNKMRRGKLHLPTEDLEAEMFEYIISEMERNGFEHYEISNFTKPGFESRHNLMYWDNVEYYGVGAGASGYLDGIRYRNRGPIQHYLKGVSEGNARLSEEVLSKNEMMEEELFLGLRKKEGVSIGKFEQKFGTSFEKRYGQIVQELQSDGLLKENNGFIQMTKKGLFLGDTVAEKFIVE
>NZ_ALSM01000019.1|WP_001241816.1|125559_125940_+|hypothetical-protein
MRLWHQDIIELLPRQQLLGQHRECCALRGNGWGRKHETVDYVFRYSPYRLFAYHQLVMEEMMERGYRVSKEWLIAEYRGMKCPRYDTLNPVDLETPIYPEHNQDYLQECLWNLKAKGIDLPINKIK
>NZ_ALSM01000019.1|WP_000159234.1|125163_125535_+|YbgA-family-protein
MTKEAELLWAKHKYLVLSKSQKIYLDIRQTLKSPNCTVLDVQSLIDQAVLLEESPSQVTNAYMHIWGYFKNKAERQEKEEFLTLLEKYRKTGYQRRKLLAFLKQLLAKYPNSYLQNSSIFEEE
>NZ_ALSM01000019.1|WP_000438314.1|136703_137120_+|nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
>NZ_ALSM01000019.1|WP_001019133.1|137255_139088_+|elongation-factor-4
MNIEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRAEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGEVDAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTITLANNPAIEPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTRVDSIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKLIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDDKK
>NZ_ALSM01000019.1|WP_029663839.1|139348_141967_+|pneumococcal-type-histidine-triad-protein
MIALAGLVLSCHFALTACHTQEHKNSHHIKTKQVAKKKANKKKVSVKESHKKRKGVAGVDFPTDDGFLLTKDSKILSHTDSGIVVAHGNHSHFIFYSDLKGSKFSYLIPNANTKTNKNQAVRNFKAGAVAVNTLNDGYVFNPADIVSEDANGYVVRHGDHFHYIPKASLSQQKQVQASRAVSRLGNQSNSHYRVNSSKIAGLHYPTSNGFLFNGRGIKGTTPTGILVEHHNHLHFISFADLRKGGWGSIADRYQPQKKADSKKQSPSSKKPRTENTLPKDIKDKLAYLARELHLDISRIRVLKTLNGEIGFEYPHDDHTHVIMAKDIDLSKPIPNPHHDDEDHHKGHHHDESDHKHEEHEHTKSNKLSDEDQKKLIYLAEKLGLNPNQIEVLTSEDGSIIFKYPHDDHSHTIASKDIEIGKPIPDGHHDHSHAKDKVGMATLKQIGFDDEIIQDILHADAPTPFPSNETNPEKMRQWLATVTKINIGQRTNPFQRFGLSLMPNIEVLGIGFTPINDMTPVLQFKKLKQLWMTNTGITDYSFLDKMPLLEGLDISQNGIKDLSFLTKYKQLSLIAAANNGITSLKPLAELPNLQFLVLSHNNISDLTPLSNLTKLQELHLDHNNVKNLSALSGKKDLKVLDLSNNKSADLSTLKTTSLETLLLNETNTSNLSFLKQNPKVSNLTINNAKLASLDGIEESDEIVKVEAEGNQIKSLVLKNKQGLLKFLNVTNNQLTSLEGVNNYTSLETLSVSKNKLESLDIKTPNKTVTNLDFSHNNVPTSQLKLNEKNIPEAVAKNFPAVVEGSMVGNGSLAEKAAMASKEDKQVSDNTNHQKNTEKSAQANADSKKENPKTHDEHHDHEETDHAHVGHHHH
>NZ_ALSM01000019.1|WP_000180007.1|142066_142726_+|HD-domain-containing-protein
MTMVKREDVILNATENMVHHKLKNDPSGHDWFHIVRVRNLAVELAHKEGANTFICQMAALLHDIIDDKICQDSKQASYELTQWLYSQDLAIAEVEHILDILENISFKAGTGLTMKTLEGQIVQDADRLDAMGAIGIARTMAYSGSKGRLIHDPNLKPRENLTLEEYRNGQDTAIMHFYEKLLKLKDLMNTKQGKMLAQKRHDFLELYLAEFYAEWNGKR
>NZ_ALSM01000019.1|WP_000621142.1|142734_143199_+|GNAT-family-N-acetyltransferase
MIRRAKEKDLPDIAELLKQILMLHHEVRPDIFHTRGSKFSKEQLKEMLIDESKPIFVYESDEGKVVAHLFLQLQEKRDLPRKSFKTLYIDDLCIDEEVRGQQIGQKLMDFARQYAKKHGCYNITLNVWNDNQRAVSFYEKLGFKPQQTQMEEIL
>NZ_ALSM01000019.1|WP_000665410.1|143198_143633_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKETQEELRQRIGHTAYQVTQNSATEHAFTGKYDDFFEEGIYVDIVSGEVLFSSLDKFQSGCGWPAFSKPIENRMVTNHQDHSHGMHRIEVRSRQADSHLGHVFNDGPVDAGGLRYCINSAALDFIPYDQMAKRGYGDYLSLFD
>NZ_ALSM01000019.1|WP_000168898.1|143784_146577_+|cation-transporting-P-type-ATPase
MASTNNVSDTNTRFAKEELEEVFEELGTTQGGLSDEEVAVRQKKYGLNLLSEVKQESIILLFLKNFTSLMAILLWVGGFVAIVSNSLELGLAIWMVNVINGIFSFIQEYRASQATQALEKMLPSYSRVLRKGSEEKILSEQLVPGDIVLIEEGDRISADGRLIKTTDLQVNQSALTGESNPIYKDSNVENDQSKTLIECDNMVFAGTTVSSGSATMVVTAIGMQTQFGQIADLTQGMKSEKSPLQRELDRLTKQISIISITVGIIFFLAATFFVKEPVSKSFIFALGMIVAFIPEGLLPTVTLSLAMAVQRMAKEHALVKKLSSVETLGATSVICSDKTGTLTQNEMTVNHLWQNGKSYQVTGLGYAPEGQILFEGDNICFGNSDRGDLEKLIRFAHLCSNAQVLPPNDDRSTYTVLGDPTEACLNVLLEKSGINIQENRKFAPRLKELPFDSVRKRMTTIHSLGGDEKDKKISITKGAPKEILDLSDYVLSDGKVIPLNKEERNKIQLANDTFAKDGLRVLAVSYCDIEGFSKEQWTQENLEQHMVFIGLIAMSDPPREGVREAIDKCHAASIRIIMVTGDYGLTALSIAKNIGIIRNDDAKVISGLELSEMTDSQLKKELSGEVVFARVAPEQKYRVVTILQEMGEVVAVTGDGVNDAPALKKSDIGVAMGVTGTDVAKESADMILTDDHFASIVHAVEEGRAVYQNIKKFLTYIFNSNTPEAVPSAFFLFSKGFIPLPLTVMQILAVDLGTDMLPALGLGVEPPETDVMNRPPRRLTDRLLDKGLLIKSFLWYGTIESVLAMGGFFWAHYLRYGNFTFFVANGIPYREATTMTLGAIIFSQIGMVMNSRTSYQSIKALSIFGNKLINFGIIMEILAFLVLVYVPLFHNLFNTASLGLSHWLYLISCPFIMIGLDEVRKLFSSRKNKR
>NZ_ALSM01000019.1|WP_000065321.1|146576_147680_+|DUF2974-domain-containing-protein
MSNIITYLKNNSNLTFDELALNDVDILCLNEFGYISFEKLINTTEMKSVLVCELYHEYLQTMAKSYSFMFTSQRHDLCQLMMTSKRFKNLTLSYYRAEISLEFEKQFAAMVFTIPNINYHQVVFRGTDANLIGWKEDFKLTYMREISAHRSAIKYLNTILPYFDKVVLSGHSKGGNLALYAAMFTKPDLKAKIDLIWLIDSPGLQKTLLPTTEYKTTKQKCIRLLPEESIVGMMLYSDIEPLIISSNARGILQHDVTTWEIQEPAILKTGTGLSLKSICFEKTFQQWMAELKSQERKLFFDLLFDSFLSSGVSSLDDFNLASRAKMMKAFHSFRELDDDKKRLFNKSLKLLVTIFWGAYHDNSRETK
>NZ_ALSM01000019.1|WP_000146566.1|147800_148439_-|CatB-related-O-acetyltransferase
MASILKKHLEKRLELKNDPMRTDMSTGASYPKYGFSVGKYTYGYQQFFYEGVNLKEIGAFCSIAQNVTITGLNHPTDHITTNPFIYYKSRGFINEDRADLIDEKKNGKVIIGNDVWIGTNVTILPSVTIGNGAIIGAGSVITKDIPDYGVVAGTPAKIIKYRFSEEEITLLNASQWWNWSDEAIKEHISEFSDKKEFFNTLKSISENKNHKL
>NZ_ALSM01000019.1|WP_001056394.1|149149_149761_+|TVP38/TMEM64-family-protein
MNMKLSKRYRFWQKVIKALGVLALIATLVLVVYLYKLGILNDSNELKDLVHKYEFWGPMIFIVAQIVQIVFPVIPGGVTTVAGFLIFGPTLGFIYNYIGIIIGSVILFWLVKFYGRKFVLLFMDQKTFDKYESKLETSGYEKFFIFCMASPISPADIMVMITGLSNMSIKRFVTIIMITKPISIIGYSYLWIYGGDILKNFLN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_ALSM01000019_1	1.2\|135884\|29\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135884-135912	29	MK448736	Streptococcus phage Javan35, complete genome	13157-13185	0	1.0
NZ_ALSM01000019_1	1.2\|135884\|29\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135884-135912	29	MK448781	Streptococcus phage Javan5, complete genome	15179-15207	0	1.0
NZ_ALSM01000019_1	1.2\|135884\|29\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135884-135912	29	MK448938	Streptococcus phage Javan44, complete genome	13158-13186	0	1.0
NZ_ALSM01000019_1	1.2\|135884\|29\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135884-135912	29	MK448911	Streptococcus phage Javan34, complete genome	13157-13185	0	1.0
NZ_ALSM01000019_1	1.2\|135884\|29\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135884-135912	29	MK448916	Streptococcus phage Javan36, complete genome	13157-13185	0	1.0
NZ_ALSM01000019_1	1.3\|135949\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135949-135978	30	MK448924	Streptococcus phage Javan384, complete genome	23479-23508	0	1.0
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	MK448871	Streptococcus phage Javan196, complete genome	2242-2271	0	1.0
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	MK448697	Streptococcus phage Javan185, complete genome	2242-2271	0	1.0
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	MK448693	Streptococcus phage Javan177, complete genome	2242-2271	0	1.0
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	MK448729	Streptococcus phage Javan31, complete genome	2521-2550	0	1.0
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	MK448696	Streptococcus phage Javan183, complete genome	2242-2271	0	1.0
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	MK448837	Streptococcus phage Javan10, complete genome	2521-2550	0	1.0
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	MK448868	Streptococcus phage Javan188, complete genome	2242-2271	0	1.0
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	MK448691	Streptococcus phage Javan17, complete genome	2521-2550	0	1.0
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	MK448866	Streptococcus phage Javan184, complete genome	2242-2271	0	1.0
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	MK448699	Streptococcus phage Javan189, complete genome	2242-2271	0	1.0
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	MK448867	Streptococcus phage Javan186, complete genome	2242-2271	0	1.0
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	MK448948	Streptococcus phage Javan46, complete genome	2521-2550	0	1.0
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	MK448768	Streptococcus phage Javan47, complete genome	2521-2550	0	1.0
NZ_ALSM01000019_1	1.1\|135818\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135818-135847	30	MK448852	Streptococcus phage Javan140, complete genome	17195-17224	1	0.967
NZ_ALSM01000019_1	1.1\|135818\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135818-135847	30	MK448678	Streptococcus phage Javan135, complete genome	17183-17212	1	0.967
NZ_ALSM01000019_1	1.3\|135949\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135949-135978	30	MK448723	Streptococcus phage Javan271, complete genome	22317-22346	1	0.967
NZ_ALSM01000019_1	1.3\|135949\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135949-135978	30	MK448753	Streptococcus phage Javan407, complete genome	23326-23355	1	0.967
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	MK448976	Streptococcus phage Javan528, complete genome	2242-2271	1	0.967
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	MK448961	Streptococcus phage Javan494, complete genome	2242-2271	1	0.967
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	MK448855	Streptococcus phage Javan150, complete genome	2206-2235	1	0.967
NZ_ALSM01000019_1	1.1\|135818\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135818-135847	30	MK448784	Streptococcus phage Javan505, complete genome	18268-18297	2	0.933
NZ_ALSM01000019_1	1.1\|135818\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135818-135847	30	MK448947	Streptococcus phage Javan458, complete genome	18268-18297	2	0.933
NZ_ALSM01000019_1	1.1\|135818\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135818-135847	30	MK448689	Streptococcus phage Javan163, complete genome	18268-18297	2	0.933
NZ_ALSM01000019_1	1.1\|135818\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135818-135847	30	MK448974	Streptococcus phage Javan524, complete genome	18268-18297	2	0.933
NZ_ALSM01000019_1	1.1\|135818\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135818-135847	30	MK448789	Streptococcus phage Javan513, complete genome	18267-18296	2	0.933
NZ_ALSM01000019_1	1.2\|135884\|29\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135884-135912	29	MK448754	Streptococcus phage Javan411, complete genome	15409-15437	6	0.793
NZ_ALSM01000019_1	1.2\|135884\|29\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135884-135912	29	MK448929	Streptococcus phage Javan400, complete genome	15409-15437	6	0.793
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	KR131710	Fusobacterium phage Funu1, complete genome	31220-31249	7	0.767
NZ_ALSM01000019_1	1.2\|135884\|29\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135884-135912	29	NZ_CP018188	Streptococcus salivarius strain ICDC2 plasmid, complete sequence	28137-28165	8	0.724
NZ_ALSM01000019_1	1.2\|135884\|29\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135884-135912	29	MT310854	Streptomyces phage CricKo, complete genome	32420-32448	8	0.724
NZ_ALSM01000019_1	1.2\|135884\|29\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135884-135912	29	MH155877	Streptomyces phage Rainydai, complete genome	32420-32448	8	0.724
NZ_ALSM01000019_1	1.2\|135884\|29\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135884-135912	29	MT657340	Streptomyces phage Thiqqums, complete genome	32420-32448	8	0.724
NZ_ALSM01000019_1	1.2\|135884\|29\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	135884-135912	29	MH155880	Streptomyces phage SendItCS, complete genome	31733-31761	8	0.724
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	NC_031062	Erwinia phage vB_EamP_Frozen, complete genome	404-433	8	0.733
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	KX098391	Erwinia phage vB_EamP_Gutmeister, complete genome	401-430	8	0.733
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	KX098390	Erwinia phage vB_EamP_Rexella, complete genome	400-429	8	0.733
NZ_ALSM01000019_1	1.4\|136015\|30\|NZ_ALSM01000019\|PILER-CR,CRISPRCasFinder,CRT	136015-136044	30	KF806588	Erwinia phage Ea9-2, complete genome	380-409	8	0.733

1. spacer 1.2|135884|29|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448736 (Streptococcus phage Javan35, complete genome) position: , mismatch: 0, identity: 1.0

aagtcgaaaaagatgacttctattactgg	CRISPR spacer
aagtcgaaaaagatgacttctattactgg	Protospacer
*****************************

2. spacer 1.2|135884|29|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 0, identity: 1.0

aagtcgaaaaagatgacttctattactgg	CRISPR spacer
aagtcgaaaaagatgacttctattactgg	Protospacer
*****************************

3. spacer 1.2|135884|29|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448938 (Streptococcus phage Javan44, complete genome) position: , mismatch: 0, identity: 1.0

aagtcgaaaaagatgacttctattactgg	CRISPR spacer
aagtcgaaaaagatgacttctattactgg	Protospacer
*****************************

4. spacer 1.2|135884|29|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448911 (Streptococcus phage Javan34, complete genome) position: , mismatch: 0, identity: 1.0

aagtcgaaaaagatgacttctattactgg	CRISPR spacer
aagtcgaaaaagatgacttctattactgg	Protospacer
*****************************

5. spacer 1.2|135884|29|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448916 (Streptococcus phage Javan36, complete genome) position: , mismatch: 0, identity: 1.0

aagtcgaaaaagatgacttctattactgg	CRISPR spacer
aagtcgaaaaagatgacttctattactgg	Protospacer
*****************************

6. spacer 1.3|135949|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448924 (Streptococcus phage Javan384, complete genome) position: , mismatch: 0, identity: 1.0

aatgaagatattctagctcgtgtaaaaata	CRISPR spacer
aatgaagatattctagctcgtgtaaaaata	Protospacer
******************************

7. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448871 (Streptococcus phage Javan196, complete genome) position: , mismatch: 0, identity: 1.0

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaaaaaatcaaagaattgtgcaaacagcg	Protospacer
******************************

8. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448697 (Streptococcus phage Javan185, complete genome) position: , mismatch: 0, identity: 1.0

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaaaaaatcaaagaattgtgcaaacagcg	Protospacer
******************************

9. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448693 (Streptococcus phage Javan177, complete genome) position: , mismatch: 0, identity: 1.0

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaaaaaatcaaagaattgtgcaaacagcg	Protospacer
******************************

10. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448729 (Streptococcus phage Javan31, complete genome) position: , mismatch: 0, identity: 1.0

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaaaaaatcaaagaattgtgcaaacagcg	Protospacer
******************************

11. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448696 (Streptococcus phage Javan183, complete genome) position: , mismatch: 0, identity: 1.0

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaaaaaatcaaagaattgtgcaaacagcg	Protospacer
******************************

12. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 0, identity: 1.0

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaaaaaatcaaagaattgtgcaaacagcg	Protospacer
******************************

13. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448868 (Streptococcus phage Javan188, complete genome) position: , mismatch: 0, identity: 1.0

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaaaaaatcaaagaattgtgcaaacagcg	Protospacer
******************************

14. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448691 (Streptococcus phage Javan17, complete genome) position: , mismatch: 0, identity: 1.0

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaaaaaatcaaagaattgtgcaaacagcg	Protospacer
******************************

15. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448866 (Streptococcus phage Javan184, complete genome) position: , mismatch: 0, identity: 1.0

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaaaaaatcaaagaattgtgcaaacagcg	Protospacer
******************************

16. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448699 (Streptococcus phage Javan189, complete genome) position: , mismatch: 0, identity: 1.0

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaaaaaatcaaagaattgtgcaaacagcg	Protospacer
******************************

17. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448867 (Streptococcus phage Javan186, complete genome) position: , mismatch: 0, identity: 1.0

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaaaaaatcaaagaattgtgcaaacagcg	Protospacer
******************************

18. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448948 (Streptococcus phage Javan46, complete genome) position: , mismatch: 0, identity: 1.0

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaaaaaatcaaagaattgtgcaaacagcg	Protospacer
******************************

19. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448768 (Streptococcus phage Javan47, complete genome) position: , mismatch: 0, identity: 1.0

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaaaaaatcaaagaattgtgcaaacagcg	Protospacer
******************************

20. spacer 1.1|135818|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448852 (Streptococcus phage Javan140, complete genome) position: , mismatch: 1, identity: 0.967

tacctacgaagactataatttcgaaacaaa	CRISPR spacer
tacctacgaagactataatctcgaaacaaa	Protospacer
*******************.**********

21. spacer 1.1|135818|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448678 (Streptococcus phage Javan135, complete genome) position: , mismatch: 1, identity: 0.967

tacctacgaagactataatttcgaaacaaa	CRISPR spacer
tacctacgaagactataatctcgaaacaaa	Protospacer
*******************.**********

22. spacer 1.3|135949|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448723 (Streptococcus phage Javan271, complete genome) position: , mismatch: 1, identity: 0.967

aatgaagatattctagctcgtgtaaaaata	CRISPR spacer
aatgaagacattctagctcgtgtaaaaata	Protospacer
********.*********************

23. spacer 1.3|135949|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448753 (Streptococcus phage Javan407, complete genome) position: , mismatch: 1, identity: 0.967

aatgaagatattctagctcgtgtaaaaata	CRISPR spacer
aatgaagacattctagctcgtgtaaaaata	Protospacer
********.*********************

24. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448976 (Streptococcus phage Javan528, complete genome) position: , mismatch: 1, identity: 0.967

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaaaaaatcaaagaattgtgcaagcagcg	Protospacer
************************.*****

25. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448961 (Streptococcus phage Javan494, complete genome) position: , mismatch: 1, identity: 0.967

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaaaaaatcaaagaattgtgcaagcagcg	Protospacer
************************.*****

26. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448855 (Streptococcus phage Javan150, complete genome) position: , mismatch: 1, identity: 0.967

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaaaaaatcaaagaattgtgcaagcagcg	Protospacer
************************.*****

27. spacer 1.1|135818|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448784 (Streptococcus phage Javan505, complete genome) position: , mismatch: 2, identity: 0.933

tacctacgaagactataatttcgaaacaaa	CRISPR spacer
cacctacgaagactataatctcgaaacaaa	Protospacer
.******************.**********

28. spacer 1.1|135818|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448947 (Streptococcus phage Javan458, complete genome) position: , mismatch: 2, identity: 0.933

tacctacgaagactataatttcgaaacaaa	CRISPR spacer
cacctacgaagactataatctcgaaacaaa	Protospacer
.******************.**********

29. spacer 1.1|135818|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448689 (Streptococcus phage Javan163, complete genome) position: , mismatch: 2, identity: 0.933

tacctacgaagactataatttcgaaacaaa	CRISPR spacer
cacctacgaagactataatctcgaaacaaa	Protospacer
.******************.**********

30. spacer 1.1|135818|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448974 (Streptococcus phage Javan524, complete genome) position: , mismatch: 2, identity: 0.933

tacctacgaagactataatttcgaaacaaa	CRISPR spacer
cacctacgaagactataatctcgaaacaaa	Protospacer
.******************.**********

31. spacer 1.1|135818|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448789 (Streptococcus phage Javan513, complete genome) position: , mismatch: 2, identity: 0.933

tacctacgaagactataatttcgaaacaaa	CRISPR spacer
cacctacgaagactataatctcgaaacaaa	Protospacer
.******************.**********

32. spacer 1.2|135884|29|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448754 (Streptococcus phage Javan411, complete genome) position: , mismatch: 6, identity: 0.793

aagtcgaaaaagatgacttctattactgg	CRISPR spacer
aaccaaaaaaagatgacttttattattgg	Protospacer
** . .*************.*****.***

33. spacer 1.2|135884|29|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MK448929 (Streptococcus phage Javan400, complete genome) position: , mismatch: 6, identity: 0.793

aagtcgaaaaagatgacttctattactgg	CRISPR spacer
aaccaaaaaaagatgacttttattattgg	Protospacer
** . .*************.*****.***

34. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to KR131710 (Fusobacterium phage Funu1, complete genome) position: , mismatch: 7, identity: 0.767

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
agaaaatatcaaagaattgagcaaaaatta	Protospacer
 ***** ************ ***** * ..

35. spacer 1.2|135884|29|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018188 (Streptococcus salivarius strain ICDC2 plasmid, complete sequence) position: , mismatch: 8, identity: 0.724

aagtcgaaaaagatgacttctattactgg	CRISPR spacer
ctgtagaaaaagacgacttctattatatt	Protospacer
  ** ********.***********.

36. spacer 1.2|135884|29|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MT310854 (Streptomyces phage CricKo, complete genome) position: , mismatch: 8, identity: 0.724

aagtcgaaaaagatgacttctattactgg	CRISPR spacer
tgatcaaagaagatgacttctattacacc	Protospacer
 ..**.**.*****************

37. spacer 1.2|135884|29|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MH155877 (Streptomyces phage Rainydai, complete genome) position: , mismatch: 8, identity: 0.724

aagtcgaaaaagatgacttctattactgg	CRISPR spacer
tgatcaaagaagatgacttctattacacc	Protospacer
 ..**.**.*****************

38. spacer 1.2|135884|29|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MT657340 (Streptomyces phage Thiqqums, complete genome) position: , mismatch: 8, identity: 0.724

aagtcgaaaaagatgacttctattactgg	CRISPR spacer
tgatcaaagaagatgacttctattacacc	Protospacer
 ..**.**.*****************

39. spacer 1.2|135884|29|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to MH155880 (Streptomyces phage SendItCS, complete genome) position: , mismatch: 8, identity: 0.724

aagtcgaaaaagatgacttctattactgg	CRISPR spacer
tgatcaaagaagatgacttctattacacc	Protospacer
 ..**.**.*****************

40. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to NC_031062 (Erwinia phage vB_EamP_Frozen, complete genome) position: , mismatch: 8, identity: 0.733

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaacaaatcaaagaattgttcaatgccaa	Protospacer
**** *************** ***     .

41. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to KX098391 (Erwinia phage vB_EamP_Gutmeister, complete genome) position: , mismatch: 8, identity: 0.733

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaacaaatcaaagaattgttcaatgccaa	Protospacer
**** *************** ***     .

42. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to KX098390 (Erwinia phage vB_EamP_Rexella, complete genome) position: , mismatch: 8, identity: 0.733

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaacaaatcaaagaattgttcaatgccaa	Protospacer
**** *************** ***     .

43. spacer 1.4|136015|30|NZ_ALSM01000019|PILER-CR,CRISPRCasFinder,CRT matches to KF806588 (Erwinia phage Ea9-2, complete genome) position: , mismatch: 8, identity: 0.733

tgaaaaaatcaaagaattgtgcaaacagcg	CRISPR spacer
tgaacaaatcaaagaattgttcaatgccaa	Protospacer
**** *************** ***     .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

8. NZ_ALSM01000022

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

212431 : 260043

Streptococcus_phage(83.02%)

holin,terminase,head,integrase,protease,tail,portal,capsid

attL 224288:224301|attR 260576:260589

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000134196.1\|212431_214384_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	1.5e-143	44.8
WP_001106189.1\|214384_214945_-	HAD-IA family hydrolase	NA	NA	NA	NA
WP_000078931.1\|215063_216269_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_000027835.1\|216693_216882_-	hypothetical protein	J7KIW4	Streptococcus_phage	3.3e-16	78.2
WP_000076697.1\|216923_217124_-	CsbD family protein	J7KJ36	Streptococcus_phage	2.1e-21	86.4
WP_000829578.1\|217277_218237_-	Abi family protein	A0A059NT88	Lactococcus_phage	1.3e-58	38.7
WP_000257224.1\|218509_219853_-	1,4-beta-N-acetylmuramidase	J7KIY0	Streptococcus_phage	1.8e-252	95.1
WP_000609111.1\|219978_220206_-\|holin	phage holin	A7J2B3	Streptococcus_phage	1.7e-30	97.3
WP_001017826.1\|220198_220501_-	hypothetical protein	J7KH30	Streptococcus_phage	5.2e-27	63.4
WP_000889196.1\|220660_221053_-	DUF1366 domain-containing protein	J7KKA3	Streptococcus_phage	8.0e-12	39.6
WP_000214871.1\|221064_223068_-	hypothetical protein	J7KC14	Streptococcus_phage	0.0e+00	85.2
WP_025194476.1\|223080_227208_-\|tail	phage tail protein	J7KBT9	Streptococcus_phage	0.0e+00	87.0
224288:224301	attL	NA	NA	NA	NA
WP_000668940.1\|227198_228710_-\|tail	phage tail family protein	J7KH53	Streptococcus_phage	2.3e-288	96.6
WP_000526767.1\|228706_232648_-\|tail	phage tail tape measure protein	J7KDT4	Streptococcus_phage	0.0e+00	92.9
WP_000928086.1\|232660_232834_-	hypothetical protein	J7KBS0	Streptococcus_phage	1.2e-20	92.7
WP_000273027.1\|232857_233178_-	hypothetical protein	J7KK85	Streptococcus_phage	8.4e-44	82.1
WP_000521116.1\|233231_233855_-	hypothetical protein	J7KKC8	Streptococcus_phage	8.9e-90	87.4
WP_000559944.1\|233870_234296_-	hypothetical protein	J7KBZ9	Streptococcus_phage	1.5e-75	93.6
WP_000160228.1\|234292_234670_-	HK97 gp10 family phage protein	J7KDM3	Streptococcus_phage	6.6e-56	83.2
WP_000632972.1\|234666_235014_-\|head	phage head closure protein	J7KJ42	Streptococcus_phage	1.8e-47	83.6
WP_000117304.1\|235010_235313_-\|head,tail	phage head-tail connector protein	J7KC36	Streptococcus_phage	8.0e-44	87.0
WP_017645148.1\|235315_235477_-	hypothetical protein	J7KH04	Streptococcus_phage	1.0e-13	75.5
WP_000459132.1\|235490_236675_-\|capsid	phage major capsid protein	J7KJ82	Streptococcus_phage	2.6e-167	77.6
WP_001124816.1\|236699_237365_-\|protease	Clp protease ClpP	M1Q115	Streptococcus_phage	1.7e-91	77.2
WP_000007728.1\|237342_238563_-\|portal	phage portal protein	J7KDU3	Streptococcus_phage	4.8e-188	82.2
WP_001042281.1\|238593_238797_-	hypothetical protein	A7J295	Streptococcus_phage	1.3e-10	60.3
WP_165736994.1\|238789_238960_-	hypothetical protein	NA	NA	NA	NA
WP_000695962.1\|238956_240711_-	hypothetical protein	J7KKD1	Streptococcus_phage	0.0e+00	94.7
WP_000532794.1\|240725_241193_-\|terminase	phage terminase small subunit P27 family	J7KC46	Streptococcus_phage	7.7e-70	87.1
WP_001895795.1\|241363_241702_-	HNH endonuclease	J7KH36	Streptococcus_phage	2.3e-55	95.4
WP_000142570.1\|242332_242767_-	ArpU family transcriptional regulator	J7KDQ1	Streptococcus_phage	6.5e-71	95.1
WP_000660743.1\|243155_243422_-	hypothetical protein	NA	NA	NA	NA
WP_000221696.1\|243418_243613_-	hypothetical protein	NA	NA	NA	NA
WP_001105090.1\|243800_244100_-	hypothetical protein	M1PFH6	Streptococcus_phage	1.3e-17	45.4
WP_001019149.1\|244120_244633_-	DUF1642 domain-containing protein	A0A097PAV5	Streptococcus_pyogenes_phage	2.7e-28	46.0
WP_000564605.1\|244629_244773_-	hypothetical protein	NA	NA	NA	NA
WP_000139628.1\|244776_245046_-	hypothetical protein	A7J287	Streptococcus_phage	1.8e-23	69.7
WP_000159368.1\|245042_245207_-	hypothetical protein	NA	NA	NA	NA
WP_000150115.1\|245237_245477_-	hypothetical protein	A0A097PAV1	Streptococcus_pyogenes_phage	7.5e-05	55.6
WP_000763908.1\|245460_245757_-	DUF1599 domain-containing protein	J7KBY0	Streptococcus_phage	1.2e-41	87.8
WP_001076208.1\|245835_246183_-	VRR-NUC domain-containing protein	J7KC03	Streptococcus_phage	4.9e-45	87.4
WP_000274892.1\|246136_247006_-	bifunctional DNA primase/polymerase	A0A1P8BME8	Lactococcus_phage	3.4e-103	65.6
WP_000203211.1\|247274_248828_-	hypothetical protein	A0A1P8BM51	Lactococcus_phage	5.7e-210	70.2
WP_000896928.1\|248845_249328_-	DUF669 domain-containing protein	A0A1P8BMD4	Lactococcus_phage	1.1e-60	71.3
WP_047198501.1\|249332_250736_-	DEAD/DEAH box helicase	A0A1P8BMH7	Lactococcus_phage	7.9e-195	72.5
WP_000704951.1\|250771_251455_-	AAA family ATPase	J7KC09	Streptococcus_phage	4.6e-124	98.2
WP_000650504.1\|251441_251732_-	hypothetical protein	J7KDN2	Streptococcus_phage	8.2e-38	100.0
WP_001058282.1\|251728_251929_-	hypothetical protein	J7KK69	Streptococcus_phage	9.3e-33	100.0
WP_000765382.1\|252004_252148_-	hypothetical protein	A0A1P8VVR9	Streptococcus_phage	2.1e-07	77.1
WP_001191791.1\|252177_252435_-	hypothetical protein	NA	NA	NA	NA
WP_000728090.1\|252513_252690_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_017645150.1\|252804_252981_+	hypothetical protein	NA	NA	NA	NA
WP_001003168.1\|253008_253200_-	hypothetical protein	NA	NA	NA	NA
WP_000032137.1\|253218_253740_-	hypothetical protein	J7KJY1	Streptococcus_phage	2.8e-68	86.0
WP_001156317.1\|253732_254692_-	hypothetical protein	A0A286QS27	Streptococcus_phage	1.4e-89	55.2
WP_000164462.1\|254745_254952_-	helix-turn-helix transcriptional regulator	A0A1S5SFQ0	Streptococcus_phage	8.4e-21	72.1
WP_000360289.1\|255027_255363_+	hypothetical protein	J7KDN7	Streptococcus_phage	1.7e-15	69.1
WP_000356582.1\|255310_255529_-	hypothetical protein	J7KIV4	Streptococcus_phage	6.0e-09	80.0
WP_001008979.1\|255579_256221_+	hypothetical protein	J7KJ31	Streptococcus_phage	1.5e-116	100.0
WP_192828058.1\|256319_256460_-	hypothetical protein	J7KH24	Streptococcus_phage	4.1e-19	97.8
WP_000703681.1\|256536_256749_+	hypothetical protein	J7KBX0	Streptococcus_phage	2.3e-29	100.0
WP_017645151.1\|256737_256887_-	hypothetical protein	J7KH12	Streptococcus_phage	2.7e-21	100.0
WP_000095652.1\|257247_258027_+	helix-turn-helix transcriptional regulator	M1NS52	Streptococcus_phage	3.1e-108	78.9
WP_000742866.1\|258158_258773_+	hypothetical protein	NA	NA	NA	NA
WP_000570848.1\|258945_260043_+\|integrase	site-specific integrase	Q938N9	Temperate_phage	2.1e-203	97.8
260576:260589	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

9. NZ_ALSM01000021

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

80318 : 144553

Streptococcus_phage(82.14%)

capsid,integrase,protease,portal,tail,tRNA,terminase,head,holin

attL 101916:101939|attR 133771:133794

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000900651.1\|80318_81578_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_000814043.1\|81669_83523_+\|tRNA	proline--tRNA ligase	A0A2K9L297	Tupanvirus	3.1e-05	24.6
WP_000842266.1\|83647_84232_+	glycoside hydrolase family 73 protein	Q9ZXE4	Bacillus_phage	5.3e-20	44.6
WP_001292123.1\|84354_88761_+	PolC-type DNA polymerase III	A0A0A7RWA3	Clostridium_phage	9.0e-19	33.0
WP_000526288.1\|88887_89313_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000008878.1\|89445_90060_+	nitroreductase family protein	NA	NA	NA	NA
WP_079219475.1\|90231_90567_-	hypothetical protein	NA	NA	NA	NA
WP_000466328.1\|90481_91492_+	heparinase II/III-family protein	NA	NA	NA	NA
WP_000038817.1\|91571_92573_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	3.7e-05	22.0
WP_001272875.1\|92644_93259_-	peptide deformylase	E3SLL2	Synechococcus_phage	1.8e-13	38.2
WP_000350697.1\|93324_93969_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_000689137.1\|94080_95244_+	MFS transporter	NA	NA	NA	NA
WP_000566099.1\|95289_96273_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_000599033.1\|96420_98316_+	endopeptidase	E3T4I7	Cafeteria_roenbergensis_virus	1.0e-72	30.7
WP_000737087.1\|98365_99319_-	LD-carboxypeptidase	NA	NA	NA	NA
WP_000080857.1\|99485_99722_+	hypothetical protein	NA	NA	NA	NA
WP_000393089.1\|99723_101793_+	sodium:proton antiporter	NA	NA	NA	NA
101916:101939	attL	NA	NA	NA	NA
WP_000179397.1\|101935_103006_-\|integrase	site-specific integrase	A0A1P8VVR7	Streptococcus_phage	2.1e-200	100.0
WP_001173134.1\|103127_103532_-	DUF4429 domain-containing protein	A0A1P8VVY3	Streptococcus_phage	8.1e-68	100.0
WP_000762727.1\|103584_103965_-	ImmA/IrrE family metallo-endopeptidase	A0A1P8VVS0	Streptococcus_phage	4.5e-68	100.0
WP_000114553.1\|103971_104334_-	helix-turn-helix transcriptional regulator	A0A1P8VVY1	Streptococcus_phage	3.0e-61	100.0
WP_000511144.1\|104619_104784_+	hypothetical protein	A0A1P8VVU2	Streptococcus_phage	1.8e-21	100.0
WP_001052630.1\|104766_105237_-	hypothetical protein	A0A1P8VVS1	Streptococcus_phage	8.8e-82	98.7
WP_000082755.1\|105297_105507_+	helix-turn-helix transcriptional regulator	A0A1P8VVQ4	Streptococcus_phage	3.2e-28	91.3
WP_001002368.1\|105509_106220_+	ORF6C domain-containing protein	A0A1S5SF52	Streptococcus_phage	3.5e-114	82.1
WP_000998973.1\|106279_106564_+	hypothetical protein	A0A1P8VVZ3	Streptococcus_phage	2.5e-47	93.6
WP_001061697.1\|106580_106796_+	hypothetical protein	C5J986	Streptococcus_phage	6.1e-14	62.0
WP_000343908.1\|106804_108136_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	7.7e-240	98.0
WP_025194474.1\|108138_108741_+	hypothetical protein	A0A1P8VVT8	Streptococcus_phage	3.8e-69	64.0
WP_000079054.1\|108718_109465_+	conserved phage C-terminal domain-containing protein	A0A1P8VVR3	Streptococcus_phage	1.5e-136	98.4
WP_001067867.1\|109465_110287_+	ATP-binding protein	A0A1P8VVV9	Streptococcus_phage	2.9e-144	92.3
WP_000169322.1\|110477_110969_+	MazG-like family protein	A0A1P8VVP1	Streptococcus_phage	4.9e-83	95.7
WP_000793494.1\|110968_111298_+	DUF1372 family protein	A0A1P8VVQ5	Streptococcus_phage	1.1e-54	94.5
WP_070467532.1\|111426_111654_+	DUF3310 domain-containing protein	M1NRN1	Streptococcus_phage	4.4e-31	87.7
WP_000748199.1\|111650_111857_+	hypothetical protein	A0A1P8VVV0	Streptococcus_phage	6.2e-32	100.0
WP_000609566.1\|111846_112263_+	single-stranded DNA-binding protein	A0A1P8VVS8	Streptococcus_phage	2.5e-72	99.3
WP_001008140.1\|112272_112533_+	hypothetical protein	A0A1P8VVV2	Streptococcus_phage	9.9e-43	100.0
WP_000776714.1\|112529_112877_+	helix-turn-helix transcriptional regulator	A0A1P8VVV5	Streptococcus_phage	4.0e-63	100.0
WP_000163169.1\|112873_113338_+	hypothetical protein	A0A1P8VVT5	Streptococcus_phage	1.8e-82	100.0
WP_001028147.1\|113447_113990_+\|integrase	site-specific integrase	A0A1S5SCL7	Streptococcus_phage	9.8e-101	100.0
WP_000651009.1\|114279_114567_+	hypothetical protein	A0A1P8VVZ1	Streptococcus_phage	3.6e-46	100.0
WP_000542279.1\|114566_114926_+	HNH endonuclease	A0A1P8VVU5	Streptococcus_phage	6.3e-64	100.0
WP_000601035.1\|115013_115499_+	hypothetical protein	A0A1P8VVU4	Streptococcus_phage	1.9e-79	99.4
WP_000230004.1\|115491_117204_+\|terminase	terminase large subunit	A0A1P8VVW5	Streptococcus_phage	0.0e+00	100.0
WP_001067328.1\|117212_118355_+\|portal	phage portal protein	A0A1P8VVT4	Streptococcus_phage	6.6e-216	100.0
WP_000413200.1\|118404_118947_+\|head,protease	HK97 family phage prohead protease	A0A1P8VVX2	Streptococcus_phage	2.7e-98	100.0
WP_000749070.1\|118957_120220_+\|capsid	phage major capsid protein	A0A1P8VVT0	Streptococcus_phage	2.6e-229	100.0
WP_000153862.1\|120240_120576_+	hypothetical protein	A0A1P8VVS7	Streptococcus_phage	7.0e-57	100.0
WP_000842789.1\|120572_120878_+\|head,tail	head-tail adaptor protein	A0A1P8VVX4	Streptococcus_phage	5.8e-42	100.0
WP_001074486.1\|120877_121225_+	hypothetical protein	A0A1P8VVS6	Streptococcus_phage	1.1e-60	100.0
WP_000508738.1\|121211_121556_+	hypothetical protein	A0A1P8VVU6	Streptococcus_phage	1.5e-59	100.0
WP_000222195.1\|121570_122254_+	hypothetical protein	A0A1P8VVR1	Streptococcus_phage	9.1e-128	100.0
WP_000591557.1\|122253_122730_+	hypothetical protein	A0A1P8VVU0	Streptococcus_phage	2.7e-86	99.4
WP_000140779.1\|122915_125651_+\|tail	phage tail tape measure protein	A0A1P8VVW8	Streptococcus_phage	7.3e-269	100.0
WP_000161557.1\|125647_126370_+	hypothetical protein	A0A1P8VVR4	Streptococcus_phage	2.8e-135	100.0
WP_001895725.1\|126370_130045_+\|tail	phage tail protein	A0A1P8VVT1	Streptococcus_phage	0.0e+00	100.0
WP_001071121.1\|130061_130292_+	hypothetical protein	A0A1P8VVV7	Streptococcus_phage	2.9e-30	100.0
WP_000213866.1\|130294_130633_+	hypothetical protein	A0A1P8VVU3	Streptococcus_phage	4.3e-62	100.0
WP_001135353.1\|130667_131078_+	hypothetical protein	A0A1P8VVS2	Streptococcus_phage	2.0e-69	100.0
WP_000192161.1\|131080_131410_+\|holin	phage holin	A0A1P8VVR0	Streptococcus_phage	4.8e-50	100.0
WP_000405192.1\|131413_132820_+	glucosaminidase domain-containing protein	A0A1P8VVS3	Streptococcus_phage	6.9e-231	100.0
WP_000139836.1\|133026_133212_+	type II toxin-antitoxin system HicA family toxin	A0A1P8VVU8	Streptococcus_phage	2.6e-29	100.0
WP_000878126.1\|133272_133677_+	type II toxin-antitoxin system HicB family antitoxin	A0A1P8VVW2	Streptococcus_phage	1.4e-67	100.0
WP_000242129.1\|134095_135628_-	alkyl hydroperoxide reductase subunit F	A0A2I2L5E1	Orpheovirus	8.5e-41	35.4
133771:133794	attR	NA	NA	NA	NA
WP_000060538.1\|135645_136206_-	peroxiredoxin	NA	NA	NA	NA
WP_000268453.1\|136482_137253_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_000808080.1\|137346_138387_+	elongation factor Ts	NA	NA	NA	NA
WP_001106578.1\|138546_139008_-	small multi-drug export protein	NA	NA	NA	NA
WP_000985641.1\|139180_139645_+	CtsR family transcriptional regulator	NA	NA	NA	NA
WP_000020283.1\|139641_142089_+\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	1.2e-124	39.6
WP_000586898.1\|142308_142800_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	2.2e-27	40.1
WP_000909523.1\|142813_143455_-	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	3.3e-47	48.3
WP_000192732.1\|143575_144553_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

10. NZ_ALSM01000010

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1621 : 10111

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000715592.1\|1621_2257_+	dTMP kinase	M1PSC7	Streptococcus_phage	2.8e-67	61.1
WP_000364565.1\|2276_3140_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	7.3e-74	49.7
WP_000358198.1\|3169_3496_+	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	3.2e-30	61.1
WP_000425856.1\|3495_4365_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	4.9e-110	70.4
WP_000603277.1\|4634_5270_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001167085.1\|6562_7111_+	acetyltransferase	M1PSC3	Streptococcus_phage	1.1e-54	58.4
WP_000232156.1\|7173_8355_+	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	7.0e-168	75.6
WP_000966772.1\|8409_8886_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	7.1e-39	50.9
WP_000287944.1\|8887_9244_+	arsenate reductase family protein	M1PLC0	Streptococcus_phage	1.5e-41	71.8
WP_000767484.1\|9283_10111_-	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	4.3e-124	78.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage