CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_ALTH01000028	Streptococcus agalactiae GB00264 ctg7180000003517, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000019	Streptococcus agalactiae GB00264 ctg7180000003508, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	0
NZ_ALTH01000024	Streptococcus agalactiae GB00264 ctg7180000003513, whole genome shotgun sequence	1 crisprs	cas9,cas1,cas2,csn2	10	0	0
NZ_ALTH01000013	Streptococcus agalactiae GB00264 ctg7180000003502, whole genome shotgun sequence	0 crisprs	WYL	0	0	0
NZ_ALTH01000029	Streptococcus agalactiae GB00264 ctg7180000003518, whole genome shotgun sequence	0 crisprs	DEDDh	0	1	0
NZ_ALTH01000015	Streptococcus agalactiae GB00264 ctg7180000003504, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000032	Streptococcus agalactiae GB00264 ctg7180000003521, whole genome shotgun sequence	1 crisprs	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	4	1	0
NZ_ALTH01000027	Streptococcus agalactiae GB00264 ctg7180000003516, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000003	Streptococcus agalactiae GB00264 ctg7180000003492, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000021	Streptococcus agalactiae GB00264 ctg7180000003510, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000025	Streptococcus agalactiae GB00264 ctg7180000003514, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000006	Streptococcus agalactiae GB00264 ctg7180000003495, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000016	Streptococcus agalactiae GB00264 ctg7180000003505, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000020	Streptococcus agalactiae GB00264 ctg7180000003509, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	0
NZ_ALTH01000023	Streptococcus agalactiae GB00264 ctg7180000003512, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000010	Streptococcus agalactiae GB00264 ctg7180000003499, whole genome shotgun sequence	0 crisprs	NA	0	0	1
NZ_ALTH01000004	Streptococcus agalactiae GB00264 ctg7180000003493, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000008	Streptococcus agalactiae GB00264 ctg7180000003497, whole genome shotgun sequence	0 crisprs	csa3	0	2	0
NZ_ALTH01000002	Streptococcus agalactiae GB00264 ctg7180000003491, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000001	Streptococcus agalactiae GB00264 ctg7180000003490, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000026	Streptococcus agalactiae GB00264 ctg7180000003515, whole genome shotgun sequence	0 crisprs	DinG	0	1	0
NZ_ALTH01000009	Streptococcus agalactiae GB00264 ctg7180000003498, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000014	Streptococcus agalactiae GB00264 ctg7180000003503, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000018	Streptococcus agalactiae GB00264 ctg7180000003507, whole genome shotgun sequence	0 crisprs	csm6	0	1	0
NZ_ALTH01000005	Streptococcus agalactiae GB00264 ctg7180000003494, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_ALTH01000012	Streptococcus agalactiae GB00264 ctg7180000003501, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000017	Streptococcus agalactiae GB00264 ctg7180000003506, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000007	Streptococcus agalactiae GB00264 ctg7180000003496, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000011	Streptococcus agalactiae GB00264 ctg7180000003500, whole genome shotgun sequence	0 crisprs	cas3	0	0	0
NZ_ALTH01000031	Streptococcus agalactiae GB00264 ctg7180000003520, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTH01000022	Streptococcus agalactiae GB00264 ctg7180000003511, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_ALTH01000030	Streptococcus agalactiae GB00264 ctg7180000003519, whole genome shotgun sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_ALTH01000032_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_ALTH01000032_1

96074-96434

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	CRT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	PILER-CR
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	CRISPRCasFinder

5 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_ALTH01000032_1

>merge|NZ_ALTH01000032|1|96074-96434|CRT,PILER-CR,CRISPRCasFinder
AGTTGAAACTACACACCCGCAAAGGGGCGATGATAATGAATTAATAAAAAAATAATCATTATTAATTTCAATCCACGCACCCGCAAAGGGTGCGACGCGTTGATATGAAAGGAAATTATAGAGATATGATATTTCAATCCACGCACCCGCAAAGGGTGCGACAAAACGGATGGTTGTATATTGCAGGCTATCAGCTAATTTCAATCCACGCACCCGCAAAGGGTGCGACTTTGGCTGTTTGAGTAGCTCGTTGACTTTTGCCTATTTCAATCCACGCACCCGCAAAGGGTGCGACTTTTCCGTTTTTTCATAGCAATATGTGGGACTATATTTCAATCCACGCACCCGCAAAGGGTGCGAC

>NZ_ALTH01000032|1|1|96074-96434|CRT
AGTTGAAACTACACACCCGCAAAGGGGCGATG	ATAATGAATTAATAAAAAAATAATCATTATTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GCGTTGATATGAAAGGAAATTATAGAGATATGAT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	AAAACGGATGGTTGTATATTGCAGGCTATCAGCTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TTTGGCTGTTTGAGTAGCTCGTTGACTTTTGCCT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TTTTCCGTTTTTTCATAGCAATATGTGGGACTAT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC

>NZ_ALTH01000032|1|1|96138-96434|PILER-CR
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GCGTTGATATGAAAGGAAATTATAGAGATATGAT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	AAAACGGATGGTTGTATATTGCAGGCTATCAGCTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TTTGGCTGTTTGAGTAGCTCGTTGACTTTTGCCT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TTTTCCGTTTTTTCATAGCAATATGTGGGACTAT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC

>NZ_ALTH01000032|1|1|96138-96434|CRISPRCasFinder
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GCGTTGATATGAAAGGAAATTATAGAGATATGAT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	AAAACGGATGGTTGTATATTGCAGGCTATCAGCTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TTTGGCTGTTTGAGTAGCTCGTTGACTTTTGCCT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TTTTCCGTTTTTTCATAGCAATATGTGGGACTAT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_ALTH01000032.1\|WP_000262368.1\|97906_98578_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|224385
NZ_ALTH01000032.1\|WP_000021305.1\|92689_93754_-\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_ALTH01000032.1\|WP_000735207.1\|96884_97910_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_ALTH01000032.1\|WP_000988351.1\|102188_104612_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_ALTH01000032.1\|WP_000345443.1\|99432_101328_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|187773
NZ_ALTH01000032.1\|WP_000934859.1\|105623_106403_+\|hypothetical-protein	unknown	unknown	unknown
NZ_ALTH01000032.1\|WP_000748011.1\|91584_92577_-\|aspartate--ammonia-ligase	unknown	unknown	gnl\|CDD\|225304
NZ_ALTH01000032.1\|WP_000889458.1\|98579_99428_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|226175
NZ_ALTH01000032.1\|WP_000049316.1\|94977_95937_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_ALTH01000032.1\|WP_000137511.1\|87164_88499_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277323
NZ_ALTH01000032.1\|WP_000492962.1\|93914_94817_-\|magnesium-transporter-CorA-family-protein	unknown	unknown	gnl\|CDD\|213361
NZ_ALTH01000032.1\|WP_000592256.1\|91090_91540_+\|thiol-reductase-thioredoxin	unknown	unknown	gnl\|CDD\|273542
NZ_ALTH01000032.1\|WP_032455446.1\|101327_102056_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NZ_ALTH01000032.1\|WP_000384889.1\|90118_90409_-\|hypothetical-protein	unknown	unknown	unknown
NZ_ALTH01000032.1\|WP_000161892.1\|89636_90122_-\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|173914
NZ_ALTH01000032.1\|WP_000032189.1\|106620_109272_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_ALTH01000032.1\|WP_000997618.1\|109293_109986_-\|hypothetical-protein	unknown	unknown	unknown
NZ_ALTH01000032.1\|WP_000985604.1\|90420_91125_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|367574
NZ_ALTH01000032.1\|WP_000790647.1\|88573_89647_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|226011
NZ_ALTH01000032.1\|WP_000989528.1\|96580_96874_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
NZ_ALTH01000032.1\|WP_000021305.1\|92689_93754_-\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	1.01714e-19
NZ_ALTH01000032.1\|WP_000735207.1\|96884_97910_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	5.95494e-174
NZ_ALTH01000032.1\|WP_000988351.1\|102188_104612_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.11439e-155
NZ_ALTH01000032.1\|WP_000345443.1\|99432_101328_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187773	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-C subtype; also known as Csd1 family.	0
NZ_ALTH01000032.1\|WP_000748011.1\|91584_92577_-\|aspartate--ammonia-ligase	gnl\|CDD\|225304	COG2502, AsnA, Asparagine synthetase A [Amino acid transport and metabolism].	0
NZ_ALTH01000032.1\|WP_000889458.1\|98579_99428_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|226175	COG3649, COG3649, CRISPR system related protein [Defense mechanisms].	9.89292e-155
NZ_ALTH01000032.1\|WP_000049316.1\|94977_95937_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.72879e-57
NZ_ALTH01000032.1\|WP_000137511.1\|87164_88499_-\|metallophosphoesterase	gnl\|CDD\|277323	cd00845, MPP_UshA_N_like, Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	7.10499e-59
NZ_ALTH01000032.1\|WP_000492962.1\|93914_94817_-\|magnesium-transporter-CorA-family-protein	gnl\|CDD\|213361	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family. A uncharacterized subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes.The EcCorA-ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA-ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	4.87179e-70
NZ_ALTH01000032.1\|WP_000592256.1\|91090_91540_+\|thiol-reductase-thioredoxin	gnl\|CDD\|273542	TIGR01295, Pediocin_PA-1_biosynthesis_protein_PedC, bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.	2.96539e-08
NZ_ALTH01000032.1\|WP_032455446.1\|101327_102056_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	1.52076e-112
NZ_ALTH01000032.1\|WP_000262368.1\|97906_98578_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	1.32935e-29
NZ_ALTH01000032.1\|WP_000161892.1\|89636_90122_-\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|173914	cd02163, PPAT, Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.	9.07742e-77
NZ_ALTH01000032.1\|WP_000032189.1\|106620_109272_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_ALTH01000032.1\|WP_000985604.1\|90420_91125_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|367574	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.	3.89521e-82
NZ_ALTH01000032.1\|WP_000790647.1\|88573_89647_-\|PDZ-domain-containing-protein	gnl\|CDD\|226011	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms].	1.28781e-135
NZ_ALTH01000032.1\|WP_000989528.1\|96580_96874_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.98207e-31

>NZ_ALTH01000032.1|WP_000049316.1|94977_95937_-|Gfo/Idh/MocA-family-oxidoreductase
MSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLASGEIGEVISISSTTAYPNIDHVTWFRELELGGGTVHFMAPYALSYLQYLFDATITHASGTATFPKGQSDSQSKLLLQLSNGVLVDIFLTTRLNLPHEMIIYGTEGRLIIPHFWKTTHAKLVRNDTSAQTIQVDMVSDFEKEAYHVSQMILEGQRVSHIMTPQLTLSGVKIIEDLYRSWGK
>NZ_ALTH01000032.1|WP_000492962.1|93914_94817_-|magnesium-transporter-CorA-family-protein
MFSSDFGFEIINVDDLSLQEERFLPSELLAYARDENESSFVRDIEGHLTLVYQLLDTQGHVDDVRHVPRVIPVTLFLKEDGLFVLANHKNINLVKKALNRVEKVDSPKHLLLSLVTAFSKQYFDVLDTISEERDKLINDLRKRPNKSNLARLANLQSGTVHLMMGTKQNFEMLTDLQNIEQDKENTRNEKMQLQDAIIEARQLSNMCSLNSQVFQELSSSYNNVLSNNLNDNVTTLTIISIGISIIAMVTSFYGMNVKLPFDSVDAVWVLIILITTIITIMLSIVMYIYVHKEDNHPKHK
>NZ_ALTH01000032.1|WP_000021305.1|92689_93754_-|MmcQ/YjbR-family-DNA-binding-protein
MSIESDFFRKKRFIFSSLEEFGFIKSDQEYIYCQTFMDNDFKAIITISLDGKIAGKVIDSALEEEYLPLRAANYNGSFVGEVRSAYMAILGDISDSCCKDLLFTKDQSNRLAEKIAKTFEDSVDYPFAKHPQYASYRVSGKWYALLFPLKMGKLENVPAQLSEDEVEVLNIKVNPQDMEILLQKEGIYPSYHMSKKTWVSIVLDNTLSDIEIFKLVSDSRKLVSPNKKSNSEPEFWIIPANPKFYDIDKEFAEHQLIDWTQKGKIAVGDYVFIYITAPIRALRYVCQVIERDLKTSTYLGARDVKAYMRLKLIRQFEDSTYPVAFLAEHGVKTVRGPRRMTKELRQVMAKTILE
>NZ_ALTH01000032.1|WP_000748011.1|91584_92577_-|aspartate--ammonia-ligase
MKKSFIHQQQEISFVKNTFTQYLIDKLEIVEVQGPILSQVGDGMQDNLSGIEHPVSVKVLNIPEAEFEVVHSLAKWKRHTLARFGFNEGEGLFVHMKALRPDEDSLDPTHSVYVDQWDWEKVIPDGRRNLDYLKETVEKIYKAIRLTELAVEARFDIESILPKRITFIHTEELVEKYPDLSPKERENAIAKEYGAVFLIGIGGELADGKPHDGRAPDYDDWTTPSENGFKGLNGDILVWNEQLGTAFELSSMGIRVDEDALKRQVVLTGDEDRLEFEWHKTLLRGFFPLTIGGGIGQSRLAMFLLRKKHIGEVQSSVWPKEVRDTFENIL
>NZ_ALTH01000032.1|WP_000592256.1|91090_91540_+|thiol-reductase-thioredoxin
MIKKLLLSLIAILCLTTLKSNLSSADTMTISPQQYQHMITNSDLIAITDKALVSKSQQSEATIFIGRPTCQYCRAFLPKLLKSQATLHSKIYYLDSQKYKGERLKSFFKKHHITTVPNLAHYQRGKMTKYLVQGSQATPQQIQTFLSQK
>NZ_ALTH01000032.1|WP_000985604.1|90420_91125_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MAIKLNNNFLIIMGTSFLLLLAYHIKKEGKEIPSSLFVISNFFDNSTLFFVIIVVMRVVAGTFGGRPLKTLDGKTTRPTTDKVKGAIFNMIGPFFEGGRVLDLFSGSGSLAIEAISRGMDQAVLVEKDRRAQVVIQENIAMTKSPEQFQLLKMEANRALEQLTGQFDLVLLDPPYAKEEIVKQIQIMDSKGLLGDDIMIVCETDKSVDLPEEIASFGIWKQKIYGISKVTVYVR
>NZ_ALTH01000032.1|WP_000384889.1|90118_90409_-|hypothetical-protein
MDYKLVMIILILVILIYLLLRLHYLEELLKHYHFKNDEGVCSLSRTKNPLYLLMAMITFLPNLINWIANGFEAIDIVRLIPVVVFLWLYYCGDDDE
>NZ_ALTH01000032.1|WP_000161892.1|89636_90122_-|pantetheine-phosphate-adenylyltransferase
MTKKALFTGSFDPVTNGHLDIIERASYLFDHVYIGLFYNLEKQGYFSIECRKKMLEEAIRQFKNVSVLVAQDRLAVDLAREVGAKYFVRGLRNSQDFDYEANLEFFNKQLADDIETVYLSTSPSLSPISSSRIRELIHFKASVKPFVPKSVVREVEKMSEE
>NZ_ALTH01000032.1|WP_000790647.1|88573_89647_-|PDZ-domain-containing-protein
MKNKDPKRKHKSLLGLLKWWIIGFAFLLLVLASLVVRLPYYLEMPGGAYDIRSVLKVNKKADKAKGSYNFVAVSVSQATPAQVFYAWLTPFTELSSKEETTGGFSNDDYLRINQFYMETSQNESVYQALKLANKQVSLTYKGVYVLNLAKNSTFKDRLHLADTVTGVNGKSFKNSSQLIKYVAALHLGDKVKVQYTSQGKKKESVGKVIKLSNGKNGIGIGLTDHTEVSSDVPVDFNTEGVGGPSAGLMFTLAIYDQLVKEDLRKGRKIAGTGTIEQNGHVGDIGGAGLKVVSAAKKGMDIFFVPNNPIDKNAKKGKTKVQTNYQEAKAAAKRLGTKMKIVPVQNVQQAIDYLKKTK
>NZ_ALTH01000032.1|WP_000137511.1|87164_88499_-|metallophosphoesterase
MTELIRILHLNDLHSHFENFPKVKRFFHDNQAQPIETISLDLGDNIDKSHPLTEASSGKANIQLMNELGIELATIGNNEGVGLSKKDLDQVYKDSDFTVIVGNLKDNTIEPSWAKPYIIYETQQGTKLAFLAYTFPYYKTYEPHGWMIEDPIDCLKCHLQINEIKEANCRILMSHLGIRFDTRIAQEFSEIDLIIGAHTHHLFEEGELINGTYLAAAGKYGRFVGSIDITFDNHTLKDILISTCDTKQLTGYPSDSDWAKKIESEGKEQLRKESLISFPAPLSLEESCQLVMDAMLFYAGADVAIINSGLIVQPFRKDFSRKNLHESLPHQMRLAKLTVSSQELLEIYETIYQQGQFLAQQKIHGMGFRGKYFGDVLHSGFDYKNGKIVYNEKDIDAKEEVILVIVDQYYFASYFECLKTKKVDLLFPELLRDVVADYLINMTL
>NZ_ALTH01000032.1|WP_000989528.1|96580_96874_-|CRISPR-associated-endonuclease-Cas2
MMVLVTYDVNTKTVAGRRRLRHVAKLCVDYGQRVQNSVFECSVTPAEFVEIKNELLTIIDQKSDSIRFYLLGKNWQNRVETIGKNDSYDPDIGVLLL
>NZ_ALTH01000032.1|WP_000735207.1|96884_97910_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYLTQDNFYLTRERDNIVIKQEGKIVHRFPYRIIDGIICFSYLGASPSLIELCTEKQINLSFHTPQGRFCGRFVGSTNGNVLLRREHYRLADHALSIEYAKRFILAKVSNSRKYLIRFKRDHRDRIDIQLFEDINTELMWALELIQSAPDKETLLGIEGQAANQYFRAFNELVLTDKDTFRFNGRTRRPPQDCINALMSLGYSLLTYECQSALEAVGLDSYVGFYHTDRPGRASLALDLVEEFRSYIVDRFVFSLVNKGQLNKRHFDIKENSSVILTEKGRTIFIESWQKRKHTVVEHPFTKEKVKLMLLPYVQAQLLSKAIRGDLESYPPFLI
>NZ_ALTH01000032.1|WP_000262368.1|97906_98578_-|CRISPR-associated-protein-Cas4
MVYAEDDYLMLSGIQHFQFCKRQWALIHIEQQWLDNEATAHGQILHTKADNPYIKGKRKDFLVSRAMHVSSKILGLYGILDVVEFYKDENGFSLKGKRGKWLPCIVEYKRGKPKKDRRDIVQLVAQTICLEETFGCYIEKGCLYYHSVNQKKTIEITEELRQEVLDLAEQMHFYYDNKIIGKAEYFKNCPLCSLVDICKPRLSKKTRNVDNYIRQSLVNEDSL
>NZ_ALTH01000032.1|WP_000889458.1|98579_99428_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MLEHKIDFIVTFEVKEANANGDPLNGNMPRTDAKGYGVMSDVSIKRKIRNRLQDMGKPIFVQANERIEDDFRSLEKRFSQHFTAKTPDKEIEEKANALWFDVRAFGQVFTYLKKSIGVRGPISISMAKSLEPIVISSLQITRSTNGMEAKNNSGRSSDTMGTKHFVDYGIYVLKGSINAYFAEKTGFSQEDDEAIKEVLVSLFENDASSARPEGSMRVREVFWFTHSSKLGNVSSARVFDLLEYNQSIEEKSTYDAYQIHLNQEKLAKYEAKGLTVKILEGL
>NZ_ALTH01000032.1|WP_000345443.1|99432_101328_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MDFFTSLLKTYEKAELADLVDHQKRNNEPVLLPIYHTSLKSNGKNIISVKLDKDGQFHKAEFMTDKQMIIFPVTADSVARSGSNPAPHPLVDKFAYYSAEMGQSQYDSFHKQLNNWIDYCEEGDVKRFLTIVQQFILKPEFLTLILDSLIGPDYQNNQLKVTFCDATGKEKLIDLSACFLEFSIDQFQGFKNESVSTFKTLHQSYISFVEANRENLGICNISGREEQLTDKHRGLMGNAKIISVSNKREAYKGRFREREDVFSVGYETSEKIHLMIKYLLENKNTSTWLGSSQYLINWFSDDLTNDSRLDIVSPIFDDGLEEDDDEDMPSVIALATEENKRIGKSFIKGQKLFANDATYYIAILNKTSNGRIALKYFRQIQASQLLTNLDKWQEKYSWESRSKSGKSRLRTPAFHDILNVSYGVDRDRFLELDNDNFKSDQVQKLVTSLIDGKPMPQSIVKKLGNNVKERHRYRKHWYQVEQVCLAILHKQNGEEFSPMLNHTNQNRSYLFGRLLAIFELIETLRYSLEGNGSDRITNAERYWTAHTGQPTKLMMLLENKIKPYEETLKLNRRGSWKKLEKEKEEILELLNPLLETETMEKPLDYRFIFGYYAEKNYYYPKQNTEVTESEE
>NZ_ALTH01000032.1|WP_032455446.1|101327_102056_-|type-I-C-CRISPR-associated-protein-Cas5
MYRSRDFYVRVSGQRALFTNPATKGGSERASYSVPTRQALNGIVDAIYYKPTFTNIVTEVKVINQIQTELQGVRALLHDYSADLSYVSYLSDVVYLIKFHFIWNEDRKDLNSDRLPAKHEAIMERSIRKGGRRDVFLGTRESVGLVDDISQEEYEAAVSYYNGVNIDLGIMFHSFAYPKDKKTPLKSYFTKTVMENGVITFKTQSDCDIVNTLSSYAFKVPGEIKSVNDEYMEYDAMEKGEN
>NZ_ALTH01000032.1|WP_000988351.1|102188_104612_-|CRISPR-associated-helicase/endonuclease-Cas3
MMTKETLAHYQKKIEQESEKKQSLDEHLWHVACFSRQEASIIGQGDVLFLISLYHDLGKADRAFQDKLLNNPNRHVDHSYAGAKYLCSIIGPHLKSRGVDKDERMTFNEMVGYVISAHHGMYDFCYCSDDAEYYSFNKFKNRINRDLDDYHYHEDIKGYAIKLEEKLCDYGYKDLRELIDKAFDNYQQAMSSLNWQDNSEWDYYQSCMVRLYLSLLKNADILDTVNAYGLEISPMDKTERSSLKHSYLAAIEQKYASFGRPNNQLNTIRTEIAERVKERGKRDSKGIYRLDLPTGAGKTNLSMRYAFHQLVHQDKSRFFYITPFLSVLEQNASEIRKVTGDLGVLEHHSNMVKQANEDDDKDSLLSAYLIDSWDSQVVLTSMVQFFQTLFKTKSANLRRFSSLINSVVILDEVQSLPIEVTTLFNLTMNFLNKVMDTTIVLCTATQPAYDSSEIDHRICYGGNLGELAEIVELTIEEKQIFSRTELRKFDDSDQKVYLTDVINLILGEENSVLAIFNTKKTVHNCYTMLKDMTDRPIYQLSTNMCAQHRLDLVAKIKTELQNNTPIICISTQLIEAGVDVDFHRVIRSYSGIDSIVQAAGRCNREGKRDKGQVTLVNLTNEEENISRLTEIKAKKEATESILYKIGSPINISTLNRDFFEYYYANNQGLMDYPLEDNISIYDYLSLNTYQTANKKFKGKLKQAFKTAGAKMNLINNDMIGILVPYGDAEKKLAYLEELGTSHFLSAEDYQTIKSLLKELQPFTVNVRENDPLLEATKSYLNGQILVLTSEYYDTERGVKYDSASFYF
>NZ_ALTH01000032.1|WP_000934859.1|105623_106403_+|hypothetical-protein
MLNSDFIISKSLANYIHHRRLEVGVSSTDLAEISNMSKSDWESFEKNGGAIPLKSKDIILDLLFLERFPKEKECDFIDKLFEEAKENKLWPEKIYQTMGLTPALSFIAGCEILSDDINNDLEELSKLPKESHLGQLDTSLLLSLLPQQFITKYDYEFVYKLSKVLAQYTSRNKVGSSYTAHNVIEEICLYLIAKESILYFESLDENSHLQLKELLDYNDEWPFDIFDDMDSYTFLYTDIYIEEDSPYHFKNWFVPQFYL
>NZ_ALTH01000032.1|WP_000032189.1|106620_109272_-|valine--tRNA-ligase
MSKELSPKYNPAEVEAGRYQTWLDQDVFKPSGDAEAKPYSIVIPPPNVTGKLHLGHAWDTTLQDIIIRQKRMQGFDTLWLPGMDHAGIATQAKVEERLREQGISRYDLGREKFLDKVWEWKDEYAATIKSQWGKMGLSVDYSRERFTLDEGLSKAVRKVFVDLYNRGWIYRGEFIINWDPAARTALSDIEVIHKDVEGAFYHMNYMLEDGSRALEVATTRPETMFGDVAVAVNPEDPRYKDLIGQNVILPIINKPIPIVADEHADPEFGTGVVKITPAHDPNDFAVGQRHNLPQVNVMNDDGTMNELADEFNGMDRFEARKAVVAKLESLGNLVKIEKMTHSVGHSERTGVVVEPRLSTQWFVKMDQLAKNAIANQDTEDKVEFYPPRFNDTFMSWMENVHDWVISRQLWWGHQIPAWYNVNGEMYVGEDAPEGDGWTQDEDVLDTWFSSALWPFSTMGWPDTEAADFKRYFPTSTLVTGYDIIFFWVSRMIFQSLEFTGRQPFSNVLIHGLIRDEEGRKMSKSLGNGIDPMDVIEKYGADALRWFLSNGSAPGQDVRFSYEKMDASWNFINKIWNISRYILMNNEGLTLDQARENVEKVVNSQVGNVTDRWILHNLNETVGKITENFDKFEFGVAGHILYNFIWEEFANWYVELTKEVLYSDNEDEKVVTRSVLLYTLDQILRLLHPIMPFVTEEIFGQYAEGSIVLASYPQVNATFENQTAHKGVESLKDLIRSVRNSRAEVNVAPSKPITILVKTSDSELESFFKDNSNYIKRFTNPETLEISSAIATPELAMSSVITGAEIFLPLADLLNVEEELARLEKELAKWQKELDMVGKKLSNERFVANAKPEVVQKEKDKQADYQAKYDATQERIVEMQKLVK
>NZ_ALTH01000032.1|WP_000997618.1|109293_109986_-|hypothetical-protein
MNDFFNWLITLYNDDKVAFVSLCLTLVFGFFSWLAQLKRNKQDDIRQAEQDEFNRLAQDELKEFQSFQKKFAEYQQKVSELQFNFESQENFKPYFEFSKTKSSTYVEEGKLIARICLTNVGRGTATKITTNPIDYDQDGNPMYFRTIPTKQTHAIYDYFSETFAIPNDSIFLSTTALEQTENQNHCIEFKIKFCDSSGRTYEQKFEFGYDNFLVRGINLKSVTYEPTLIK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_ALTH01000032_1	1.3\|96236\|35\|NZ_ALTH01000032\|CRT,PILER-CR,CRISPRCasFinder	96236-96270	35	MK448768	Streptococcus phage Javan47, complete genome	34297-34331	0	1.0
NZ_ALTH01000032_1	1.4\|96303\|34\|NZ_ALTH01000032\|CRT,PILER-CR,CRISPRCasFinder	96303-96336	34	MK448932	Streptococcus phage Javan42, complete genome	35042-35075	0	1.0
NZ_ALTH01000032_1	1.4\|96303\|34\|NZ_ALTH01000032\|CRT,PILER-CR,CRISPRCasFinder	96303-96336	34	MK449012	Streptococcus phage Javan94, complete genome	33617-33650	3	0.912
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_MG205643	Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence	72996-73027	5	0.844
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	548430-548461	6	0.812
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP038623	Arsenophonus nasoniae strain FIN plasmid pArsFIN11, complete sequence	39364-39395	6	0.812
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NC_017421	Borreliella burgdorferi N40 plasmid N40_lp38, complete sequence	28345-28376	6	0.812
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NC_001856	Borreliella burgdorferi B31 plasmid lp38, complete sequence	28055-28086	6	0.812
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP019853	Borreliella burgdorferi plasmid lp38, complete sequence	28068-28099	6	0.812
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP019764	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp38, complete sequence	28061-28092	6	0.812
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	484591-484622	7	0.781
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	AP014284	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S23-C63, * SEQUENCING IN PROGRESS *	9262-9293	7	0.781
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	46517-46548	7	0.781
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	131643-131674	7	0.781
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	15273-15304	7	0.781
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	232837-232868	7	0.781
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	25057-25088	7	0.781
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	158727-158758	7	0.781
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	158558-158589	7	0.781
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	1638-1669	7	0.781
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NC_020380	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-16, complete sequence	13185-13216	7	0.781
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	MH517022	Acinetobacter phage SH-Ab 15599, complete genome	51037-51068	7	0.781
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	MK496784	Capybara microvirus Cap3_SP_414, complete genome	2372-2403	7	0.781
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	U72945	Virus-like particle CAK1 of Clostridium beijerinckii origin of replication region	829-860	7	0.781
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP029456	Bacillus cereus strain FORC087 plasmid pFORC087.2, complete sequence	61423-61454	8	0.75
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	70696-70727	8	0.75
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	CP016196	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-2, complete sequence	62259-62290	8	0.75
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP045061	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence	70700-70731	8	0.75
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP045054	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence	70707-70738	8	0.75
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP045058	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence	70706-70737	8	0.75
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	MH830339	Proteus phage Stubb, complete genome	26806-26837	8	0.75
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	MG030347	Proteus phage PM135, complete genome	76557-76588	8	0.75
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	MN935203	UNVERIFIED: Proteus phage VTCCBPA139, partial genome	26007-26038	8	0.75
NZ_ALTH01000032_1	1.2\|96170\|34\|NZ_ALTH01000032\|CRT,PILER-CR,CRISPRCasFinder	96170-96203	34	NZ_MH569712	Serratia marcescens strain S120 plasmid pPM120-2, complete sequence	42532-42565	8	0.765
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NC_007103	Bacillus cereus E33L plasmid pE33L466, complete sequence	93170-93201	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP009967	Bacillus cereus E33L plasmid pBCO_1, complete sequence	228972-229003	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_MG205643	Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence	9883-9914	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_AP017932	Lactobacillus sakei strain LK-145 plasmid pLs145-a, complete sequence	5632-5663	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP025208	Lactobacillus sakei strain WiKim0074 plasmid pLSW74_2, complete sequence	12385-12416	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP021933	Lactobacillus plantarum strain TMW 1.1478 plasmid pL11478-1, complete sequence	57054-57085	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP017376	Lactobacillus plantarum strain TMW 1.708 plasmid pL1708-2, complete sequence	17183-17214	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP021472	Pediococcus pentosaceus strain SRCM100892 plasmid pPC892-2, complete sequence	18052-18083	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP052067	Lactobacillus paracasei strain 347-16 plasmid unnamed2, complete sequence	1046-1077	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP031209	Lactobacillus brevis strain UCCLB521 plasmid pUCCLB521_A, complete sequence	42073-42104	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP035015	Lactobacillus plantarum strain 12_3 plasmid pldC, complete sequence	24116-24147	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NC_003383	Listeria innocua Clip11262 plasmid pLI100, complete sequence	34563-34594	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP048005	Lactobacillus paracasei strain CACC 566 plasmid p2CACC566, complete sequence	41814-41845	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP046038	Lactobacillus sakei strain CBA3614 plasmid unnamed1, complete sequence	31384-31415	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP017410	Lactobacillus plantarum strain RI-113 plasmid pRI113_4, complete sequence	12201-12232	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NC_016608	Pediococcus claussenii ATCC BAA-344 plasmid pPECL-5, complete sequence	15266-15297	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP029967	Lactobacillus curvatus strain ZJUNIT8 plasmid pnunamed1, complete sequence	42716-42747	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP028336	Lactobacillus plantarum strain SRCM101167 plasmid unnamed2, complete sequence	38185-38216	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP028231	Lactobacillus plantarum strain SRCM101222 plasmid unnamed2, complete sequence	3683-3714	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP018183	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-3, complete sequence	17219-17250	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	MH937473	Streptococcus phage CHPC929, complete genome	34811-34842	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NC_010353	Streptococcus phage 858, complete genome	33013-33044	9	0.719
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP015507	Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence	161310-161341	10	0.688
NZ_ALTH01000032_1	1.2\|96170\|34\|NZ_ALTH01000032\|CRT,PILER-CR,CRISPRCasFinder	96170-96203	34	CP029330	Clostridium beijerinckii isolate WB53 plasmid unnamed1	3102-3135	10	0.706
NZ_ALTH01000032_1	1.2\|96170\|34\|NZ_ALTH01000032\|CRT,PILER-CR,CRISPRCasFinder	96170-96203	34	CP029330	Clostridium beijerinckii isolate WB53 plasmid unnamed1	17601-17634	10	0.706
NZ_ALTH01000032_1	1.1\|96106\|32\|NZ_ALTH01000032\|CRT	96106-96137	32	NZ_CP031220	Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence	90370-90401	11	0.656

1. spacer 1.3|96236|35|NZ_ALTH01000032|CRT,PILER-CR,CRISPRCasFinder matches to MK448768 (Streptococcus phage Javan47, complete genome) position: , mismatch: 0, identity: 1.0

aaaacggatggttgtatattgcaggctatcagcta	CRISPR spacer
aaaacggatggttgtatattgcaggctatcagcta	Protospacer
***********************************

2. spacer 1.4|96303|34|NZ_ALTH01000032|CRT,PILER-CR,CRISPRCasFinder matches to MK448932 (Streptococcus phage Javan42, complete genome) position: , mismatch: 0, identity: 1.0

tttggctgtttgagtagctcgttgacttttgcct	CRISPR spacer
tttggctgtttgagtagctcgttgacttttgcct	Protospacer
**********************************

3. spacer 1.4|96303|34|NZ_ALTH01000032|CRT,PILER-CR,CRISPRCasFinder matches to MK449012 (Streptococcus phage Javan94, complete genome) position: , mismatch: 3, identity: 0.912

tttggctgtttgagtagctcgttgacttttgcct	CRISPR spacer
tgtggttgtttgagtagctcgttgacttttgctt	Protospacer
* ***.**************************.*

4. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_MG205643 (Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence) position: , mismatch: 5, identity: 0.844

ataatgaattaataaaaaaataat-cattatta	CRISPR spacer
ataatgaatttatataaaaataatacagtttt-	Protospacer
********** *** ********* ** * **

5. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aaaatttgctaataaaaaaataatcattaata	Protospacer
* ***  ..******************** **

6. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP038623 (Arsenophonus nasoniae strain FIN plasmid pArsFIN11, complete sequence) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
attatatgttaataactaaataatcattatta	Protospacer
** **. .*******  ***************

7. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NC_017421 (Borreliella burgdorferi N40 plasmid N40_lp38, complete sequence) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatca-ttatta	CRISPR spacer
ataatgaataactaaaaaaataaggaggtatt-	Protospacer
********* * ***********  *  ****

8. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NC_001856 (Borreliella burgdorferi B31 plasmid lp38, complete sequence) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatca-ttatta	CRISPR spacer
ataatgaataactaaaaaaataaggaggtatt-	Protospacer
********* * ***********  *  ****

9. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP019853 (Borreliella burgdorferi plasmid lp38, complete sequence) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatca-ttatta	CRISPR spacer
ataatgaataactaaaaaaataaggaggtatt-	Protospacer
********* * ***********  *  ****

10. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP019764 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp38, complete sequence) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatca-ttatta	CRISPR spacer
ataatgaataactaaaaaaataaggaggtatt-	Protospacer
********* * ***********  *  ****

11. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 7, identity: 0.781

-ataatgaattaataaaaaaataatcattatta	CRISPR spacer
tataa-atattaataaaaaacaaatcattatct	Protospacer
 **** . ************  *********.

12. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to AP014284 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S23-C63, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
atccagaattaataaaaaaaaaattattagaa	Protospacer
**   *************** ***.****  *

13. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

14. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

15. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaagaaattttatact-	Protospacer
 ******************. ***. * **.*

16. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

17. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

18. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

19. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaagaaattttatact-	Protospacer
 ******************. ***. * **.*

20. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

21. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NC_020380 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-16, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcattatta--	CRISPR spacer
ataaataattaataaaaaaataa--aacactacg	Protospacer
****  *****************  * .*.**

22. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to MH517022 (Acinetobacter phage SH-Ab 15599, complete genome) position: , mismatch: 7, identity: 0.781

ataatgaat--taataaaaaaataatcattatta	CRISPR spacer
--gacgtattataatagaaaaataatcactatta	Protospacer
  .*.* **  *****.***********.*****

23. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to MK496784 (Capybara microvirus Cap3_SP_414, complete genome) position: , mismatch: 7, identity: 0.781

ataatg-aattaataaaaaaataatcattatta	CRISPR spacer
-tatcgtaattaataaaaaaatcattattacga	Protospacer
 ** .* *************** **.****. *

24. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to U72945 (Virus-like particle CAK1 of Clostridium beijerinckii origin of replication region) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcattatta-	CRISPR spacer
ttaaacaattaataaaaaaataatt-ttatgga	Protospacer
 ***  ******************. **** .

25. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP029456 (Bacillus cereus strain FORC087 plasmid pFORC087.2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataat-cattatta	CRISPR spacer
gaaattaattaatagaaaaataatccaatgct-	Protospacer
. *** ********.********* ** *..*

26. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ttaataaattaatgaaaaaataatattaacaa	Protospacer
 ****.*******.**********  * *. *

27. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to CP016196 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ttaataaactaataaaaaaataataaaatata	Protospacer
 ****.**.*************** *    **

28. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ttaataaattaatgaaaaaataatattaacaa	Protospacer
 ****.*******.**********  * *. *

29. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ttaataaattaatgaaaaaataatattaacaa	Protospacer
 ****.*******.**********  * *. *

30. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ttaataaattaatgaaaaaataatattaacaa	Protospacer
 ****.*******.**********  * *. *

31. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to MH830339 (Proteus phage Stubb, complete genome) position: , mismatch: 8, identity: 0.75

ataatga-----attaataaaaaaataatcattatta	CRISPR spacer
-----gagcattattaataaataaataatcataataa	Protospacer
     **     ********* ********** ** *

32. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to MG030347 (Proteus phage PM135, complete genome) position: , mismatch: 8, identity: 0.75

ataatga-----attaataaaaaaataatcattatta	CRISPR spacer
-----gagcattattaataaataaataatcataataa	Protospacer
     **     ********* ********** ** *

33. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to MN935203 (UNVERIFIED: Proteus phage VTCCBPA139, partial genome) position: , mismatch: 8, identity: 0.75

ataatga-----attaataaaaaaataatcattatta	CRISPR spacer
-----gagcattattaataaataaataatcataataa	Protospacer
     **     ********* ********** ** *

34. spacer 1.2|96170|34|NZ_ALTH01000032|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MH569712 (Serratia marcescens strain S120 plasmid pPM120-2, complete sequence) position: , mismatch: 8, identity: 0.765

gcgttgatatgaaaggaaattatag-agatatgat	CRISPR spacer
tcgttgatctaaaaggaaattatagcactcataa-	Protospacer
 ******* *.************** *  .**.*

35. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ataatgaatttataaaaaaataaatttaggag	Protospacer
********** ************ . * .  .

36. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP009967 (Bacillus cereus E33L plasmid pBCO_1, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ataatgaatttataaaaaaataaatttaggag	Protospacer
********** ************ . * .  .

37. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_MG205643 (Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
caaaactattaatataaaagtaatcattatct	Protospacer
  **   ******* ****.**********.

38. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_AP017932 (Lactobacillus sakei strain LK-145 plasmid pLs145-a, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

39. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP025208 (Lactobacillus sakei strain WiKim0074 plasmid pLSW74_2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

40. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP021933 (Lactobacillus plantarum strain TMW 1.1478 plasmid pL11478-1, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

41. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP017376 (Lactobacillus plantarum strain TMW 1.708 plasmid pL1708-2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

42. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP021472 (Pediococcus pentosaceus strain SRCM100892 plasmid pPC892-2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

43. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP052067 (Lactobacillus paracasei strain 347-16 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

44. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP031209 (Lactobacillus brevis strain UCCLB521 plasmid pUCCLB521_A, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

45. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP035015 (Lactobacillus plantarum strain 12_3 plasmid pldC, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

46. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NC_003383 (Listeria innocua Clip11262 plasmid pLI100, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaat-taataaaaaaataatcattatta	CRISPR spacer
-tggcaggtgtaacaaaaaaattatcattatta	Protospacer
 *......* ***.******** **********

47. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP048005 (Lactobacillus paracasei strain CACC 566 plasmid p2CACC566, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

48. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP046038 (Lactobacillus sakei strain CBA3614 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

49. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP017410 (Lactobacillus plantarum strain RI-113 plasmid pRI113_4, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

50. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NC_016608 (Pediococcus claussenii ATCC BAA-344 plasmid pPECL-5, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

51. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP029967 (Lactobacillus curvatus strain ZJUNIT8 plasmid pnunamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

52. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP028336 (Lactobacillus plantarum strain SRCM101167 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

53. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP028231 (Lactobacillus plantarum strain SRCM101222 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

54. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP018183 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-3, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

55. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to MH937473 (Streptococcus phage CHPC929, complete genome) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
atattgaattaataaaaaagtaagtaagtaaa	Protospacer
*** ***************.*** .*     *

56. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NC_010353 (Streptococcus phage 858, complete genome) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
atattgaattaataaaaaagtaagtaagtaaa	Protospacer
*** ***************.*** .*     *

57. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP015507 (Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence) position: , mismatch: 10, identity: 0.688

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
gaaatgaataaatgaaaaaataatctaccctt	Protospacer
. ******* ***.***********  . .*

58. spacer 1.2|96170|34|NZ_ALTH01000032|CRT,PILER-CR,CRISPRCasFinder matches to CP029330 (Clostridium beijerinckii isolate WB53 plasmid unnamed1) position: , mismatch: 10, identity: 0.706

gcgttgatatgaaaggaaattatagagatatgat	CRISPR spacer
caaactatatgaaagaaaattataaagatataag	Protospacer
  . . *********.********.******.*

59. spacer 1.2|96170|34|NZ_ALTH01000032|CRT,PILER-CR,CRISPRCasFinder matches to CP029330 (Clostridium beijerinckii isolate WB53 plasmid unnamed1) position: , mismatch: 10, identity: 0.706

gcgttgatatgaaaggaaattatagagatatgat	CRISPR spacer
caaactatatgaaagaaaattataaagatataag	Protospacer
  . . *********.********.******.*

60. spacer 1.1|96106|32|NZ_ALTH01000032|CRT matches to NZ_CP031220 (Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence) position: , mismatch: 11, identity: 0.656

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
tagatgaattaataaataaatattcaaatggg	Protospacer
  .************* ***** ***     .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1790 : 40613

Streptococcus_phage(87.5%)

integrase,portal,head,capsid,terminase,tail,holin

attL 19991:20005|attR 41656:41670

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000257227.1\|1790_3134_-	1,4-beta-N-acetylmuramidase	J7KH48	Streptococcus_phage	1.0e-252	94.0
WP_000611520.1\|3263_3515_-\|holin	phage holin	J7KDR1	Streptococcus_phage	9.6e-35	94.0
WP_000564986.1\|3516_3807_-	hypothetical protein	J7KH30	Streptococcus_phage	1.8e-40	90.5
WP_000222556.1\|3816_3978_-	hypothetical protein	A0A1X9I5T1	Streptococcus_phage	1.9e-07	56.8
WP_001900277.1\|4040_4457_-	DUF1366 domain-containing protein	NA	NA	NA	NA
WP_000391486.1\|4467_4620_-	hypothetical protein	NA	NA	NA	NA
WP_000206519.1\|4628_8456_-\|tail	phage tail protein	A7J2A7	Streptococcus_phage	1.7e-162	49.8
WP_000365120.1\|8468_9311_-\|tail	phage tail family protein	A7J2A6	Streptococcus_phage	2.2e-75	48.2
WP_000929201.1\|9323_13550_-	tape measure protein	A7J2A5	Streptococcus_phage	1.4e-21	46.6
WP_000398753.1\|13568_13799_-	hypothetical protein	A7J2A4	Streptococcus_phage	2.2e-14	59.2
WP_000424190.1\|13873_14329_-	hypothetical protein	A7J2A3	Streptococcus_phage	3.1e-55	70.9
WP_000450516.1\|14379_15012_-\|tail	phage major tail protein, TP901-1 family	A7J2A2	Streptococcus_phage	6.3e-59	67.1
WP_000386634.1\|15023_15383_-	hypothetical protein	A7J2A1	Streptococcus_phage	2.6e-57	98.3
WP_000053327.1\|15386_15731_-	HK97 gp10 family phage protein	A7J2A0	Streptococcus_phage	3.6e-56	100.0
WP_000639438.1\|15727_16006_-	hypothetical protein	A7J299	Streptococcus_phage	3.5e-46	97.8
WP_000356703.1\|16016_16373_-\|head,tail	phage head-tail connector protein	A7J298	Streptococcus_phage	1.4e-42	75.4
WP_000829744.1\|16376_17261_-	hypothetical protein	A7J297	Streptococcus_phage	3.3e-130	82.3
WP_000797012.1\|17279_17855_-	DUF4355 domain-containing protein	A7J296	Streptococcus_phage	4.2e-70	86.2
WP_001042288.1\|18010_18277_-	hypothetical protein	A0A097PAR8	Streptococcus_pyogenes_phage	3.5e-35	89.8
WP_025194522.1\|18279_18468_-	hypothetical protein	A7J294	Streptococcus_phage	1.2e-21	96.8
WP_032457401.1\|18495_19944_-\|capsid	minor capsid protein	A7J293	Streptococcus_phage	1.9e-260	93.6
WP_000391587.1\|19903_21436_-\|portal	phage portal protein	A7J292	Streptococcus_phage	2.5e-287	98.2
19991:20005	attL	NA	NA	NA	NA
WP_000153206.1\|21451_22729_-\|terminase	PBSX family phage terminase large subunit	A7J291	Streptococcus_phage	7.1e-243	97.6
WP_000900438.1\|22718_23171_-\|terminase	terminase small subunit	A7J290	Streptococcus_phage	3.4e-75	98.7
WP_001038191.1\|23260_23677_-	DUF722 domain-containing protein	A7J289	Streptococcus_phage	3.3e-72	98.6
WP_000687453.1\|23669_23864_-	hypothetical protein	NA	NA	NA	NA
WP_000712650.1\|24145_24316_-	hypothetical protein	A7J285	Streptococcus_phage	1.5e-20	92.3
WP_001236567.1\|24316_25639_-	DEAD/DEAH box helicase family protein	A7J284	Streptococcus_phage	4.3e-251	97.3
WP_001258484.1\|25635_25911_-	VRR-NUC domain-containing protein	A7J283	Streptococcus_phage	1.4e-42	91.2
WP_000806921.1\|26297_28682_-	hypothetical protein	A7J282	Streptococcus_phage	3.1e-276	94.4
WP_001216250.1\|28686_30609_-	DNA polymerase	A7J280	Streptococcus_phage	0.0e+00	98.3
WP_000214059.1\|30651_31215_-	DUF2815 family protein	D2J040	Enterococcus_phage	7.4e-51	57.9
WP_001143850.1\|31228_32386_-	DUF2800 domain-containing protein	A7J278	Streptococcus_phage	5.0e-219	99.2
WP_000573833.1\|32385_32685_-	hypothetical protein	A7J277	Streptococcus_phage	2.3e-43	99.0
WP_001108354.1\|32774_32978_-	hypothetical protein	A7J276	Streptococcus_phage	2.4e-28	89.6
WP_000734883.1\|33665_33812_-	hypothetical protein	NA	NA	NA	NA
WP_001123478.1\|33816_34128_-	hypothetical protein	M1Q0Y6	Streptococcus_phage	2.6e-50	86.3
WP_001002365.1\|34205_34976_-	phage antirepressor	A0A1Q1PVU2	Staphylococcus_phage	2.2e-77	57.9
WP_001112861.1\|35009_35201_-	hypothetical protein	A0A141DZR9	Streptococcus_phage	1.4e-17	69.8
WP_000495435.1\|35490_35838_+	helix-turn-helix transcriptional regulator	A0A126GGQ7	Streptococcus_phage	1.2e-40	71.8
WP_000151180.1\|35841_36228_+	ImmA/IrrE family metallo-endopeptidase	Q7Y4M1	Streptococcus_phage	4.9e-38	58.4
WP_001008091.1\|36352_38074_+	AAA family ATPase	NA	NA	NA	NA
WP_000790387.1\|38130_38988_+	DNA adenine methylase	A0A2H4UUI2	Bodo_saltans_virus	2.0e-15	29.3
WP_000269471.1\|39107_40250_+\|integrase	site-specific integrase	A1EAB7	Streptococcus_phage	2.3e-184	83.2
WP_001284634.1\|40337_40613_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	1.2e-25	71.9
41656:41670	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_ALTH01000008

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

39822 : 47026

Streptococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000706190.1\|39822_41067_+	insulinase family protein	A0A1X9I714	Streptococcus_phage	1.7e-87	41.5
WP_000217765.1\|41068_42352_+	insulinase family protein	A0A2K9V7S4	Bandra_megavirus	1.6e-21	33.3
WP_000239224.1\|42474_43017_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_000181757.1\|43016_43856_+	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	3.5e-20	30.0
WP_000510606.1\|43831_44674_+	energy-coupling factor transporter ATPase	W6JKT0	Anomala_cuprea_entomopoxvirus	2.5e-18	25.5
WP_000359358.1\|44666_45461_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_000029067.1\|45676_46216_+	LysM peptidoglycan-binding domain-containing protein	A0A249XZV3	Enterococcus_phage	3.0e-17	46.4
WP_001042661.1\|46321_47026_+	transglycosylase SLT domain-containing protein	A0A2H4J6C5	uncultured_Caudovirales_phage	3.2e-27	56.6

DBSCAN-SWA_2

55346 : 71021

Streptococcus_phage(61.54%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000852645.1\|55346_56702_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.2e-152	62.6
WP_001278152.1\|56713_57001_+	Veg family protein	NA	NA	NA	NA
WP_000092759.1\|57330_57942_+	30S ribosomal protein S4	NA	NA	NA	NA
WP_000429449.1\|59552_60518_-	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	7.1e-86	51.1
WP_000350953.1\|60544_60886_-	hypothetical protein	A0A1S5SDB5	Streptococcus_phage	2.2e-13	59.7
WP_001137532.1\|61578_61788_-	TM2 domain-containing protein	M4ZS56	Bacillus_phage	4.9e-08	55.8
WP_000906796.1\|61892_62585_-	helix-turn-helix transcriptional regulator	A0A0P0IV68	Lactobacillus_phage	4.3e-08	49.2
WP_017644534.1\|62750_62912_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000845516.1\|62965_63586_+	phage repressor protein	A0A1W6JPC3	Staphylococcus_phage	1.4e-39	42.3
WP_000648621.1\|63612_63855_+	hypothetical protein	NA	NA	NA	NA
WP_000877492.1\|64109_64442_+	hypothetical protein	NA	NA	NA	NA
WP_017644535.1\|64438_64579_+	hypothetical protein	NA	NA	NA	NA
WP_001007346.1\|64559_64757_+	hypothetical protein	NA	NA	NA	NA
WP_000206024.1\|64768_65131_+	hypothetical protein	NA	NA	NA	NA
WP_000174504.1\|65127_65469_+	hypothetical protein	NA	NA	NA	NA
WP_000492120.1\|65461_65734_+	hypothetical protein	A0A1X9I5U9	Streptococcus_phage	2.5e-28	69.8
WP_001029298.1\|65734_66592_+	primase C-terminal domain-containing protein	A0A1X9I6L2	Streptococcus_phage	4.3e-119	72.0
WP_000838178.1\|66611_68114_+	DNA primase family protein	Q9AZI5	Lactococcus_phage	2.7e-63	37.2
WP_000694577.1\|68373_68547_+	hypothetical protein	A0A1X9I5U0	Streptococcus_phage	1.9e-10	59.6
WP_001258774.1\|68730_69336_+	hypothetical protein	A0A1X9I5U4	Streptococcus_phage	7.0e-39	46.8
WP_000661535.1\|69420_69909_+	hypothetical protein	A0A1X9I5V2	Streptococcus_phage	1.2e-46	56.2
WP_000500997.1\|70306_70669_+	DUF1492 domain-containing protein	NA	NA	NA	NA
WP_060474137.1\|70643_71021_+	DUF1492 domain-containing protein	A0A1L2JXS9	Streptococcus_phage	1.0e-08	37.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_ALTH01000024

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_ALTH01000024_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_ALTH01000024_1

40026-40787

TypeII

II-A

Consensus_repeat	Method
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	PILER-CR
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CRT

11 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_ALTH01000024_1

>merge|NZ_ALTH01000024|1|40026-40787|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAAGTCATCTTTATTGACTGTTTTTCCTTCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATTTTTCTTTAGGCTACGACGGATAAGCTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTAAGAATTTTAGATACTCTACTTGAATGCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAATTGATTGCCGTTAAAACCGATAGAGGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGAATTCCACGCCACCAAGTAAACCTGTGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACAAGAAACAAACAGCCTTGATGACTTAATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTAATACTTTTACAATATGTGTTTTCACTACGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGTGCCACAGTTTGTGGCTGATTGGATTGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCAGCGAGATGCTCTAAGTAAGCATGTTGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCTTCTTTTTAATTCTTCTAACACTCCATCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCA

>NZ_ALTH01000024|1|1|40026-40655|PILER-CR
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAAGTCATCTTTATTGACTGTTTTTCCTTC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATTTTTCTTTAGGCTACGACGGATAAGCTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAAGAATTTTAGATACTCTACTTGAATGCT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CAATTGATTGCCGTTAAAACCGATAGAGGA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGAATTCCACGCCACCAAGTAAACCTGTGA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACAAGAAACAAACAGCCTTGATGACTTAAT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAATACTTTTACAATATGTGTTTTCACTAC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGTGCCACAGTTTGTGGCTGATTGGATTG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TCAGCGAGATGCTCTAAGTAAGCATGTTGA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

>NZ_ALTH01000024|1|1|40026-40721|CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAAGTCATCTTTATTGACTGTTTTTCCTTC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATTTTTCTTTAGGCTACGACGGATAAGCTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAAGAATTTTAGATACTCTACTTGAATGCT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CAATTGATTGCCGTTAAAACCGATAGAGGA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGAATTCCACGCCACCAAGTAAACCTGTGA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACAAGAAACAAACAGCCTTGATGACTTAAT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAATACTTTTACAATATGTGTTTTCACTAC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGTGCCACAGTTTGTGGCTGATTGGATTG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TCAGCGAGATGCTCTAAGTAAGCATGTTGA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TCTTCTTTTTAATTCTTCTAACACTCCATC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

>NZ_ALTH01000024|1|1|40026-40787|CRT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAAGTCATCTTTATTGACTGTTTTTCCTTC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATTTTTCTTTAGGCTACGACGGATAAGCTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAAGAATTTTAGATACTCTACTTGAATGCT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CAATTGATTGCCGTTAAAACCGATAGAGGA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGAATTCCACGCCACCAAGTAAACCTGTGA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACAAGAAACAAACAGCCTTGATGACTTAAT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAATACTTTTACAATATGTGTTTTCACTAC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGTGCCACAGTTTGTGGCTGATTGGATTG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TCAGCGAGATGCTCTAAGTAAGCATGTTGA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TCTTCTTTTTAATTCTTCTAACACTCCATC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATCTTCTTTTGACCTAACAAAAGGATATGT
GTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_ALTH01000024.1\|WP_000159234.1\|29407_29779_+\|YbgA-family-protein	unknown	unknown	gnl\|CDD\|377982
NZ_ALTH01000024.1\|WP_000914664.1\|30275_31406_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NZ_ALTH01000024.1\|WP_000590706.1\|39259_39925_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	pfam09711_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_ALTH01000024.1\|WP_000523795.1\|31409_32147_+\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
NZ_ALTH01000024.1\|WP_001040087.1\|33951_38064_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NZ_ALTH01000024.1\|WP_000929489.1\|38065_38935_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_ALTH01000024.1\|WP_000323544.1\|32147_32918_+\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_ALTH01000024.1\|WP_000122194.1\|38931_39273_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_ALTH01000024.1\|WP_000653357.1\|32907_33564_+\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884
NZ_ALTH01000024.1\|WP_000438314.1\|41344_41761_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_ALTH01000024.1\|WP_000564823.1\|41885_42110_+\|ISAs1-family-transposase	unknown	unknown	gnl\|CDD\|379382
NZ_ALTH01000024.1\|WP_001241816.1\|29803_30184_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131381

Protein	Function_ID	Function_description	E-value
NZ_ALTH01000024.1\|WP_000159234.1\|29407_29779_+\|YbgA-family-protein	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	6.08694e-28
NZ_ALTH01000024.1\|WP_000914664.1\|30275_31406_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NZ_ALTH01000024.1\|WP_000590706.1\|39259_39925_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.61399e-122
NZ_ALTH01000024.1\|WP_000523795.1\|31409_32147_+\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	3.68196e-111
NZ_ALTH01000024.1\|WP_001040087.1\|33951_38064_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	0
NZ_ALTH01000024.1\|WP_000929489.1\|38065_38935_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.54315e-139
NZ_ALTH01000024.1\|WP_000323544.1\|32147_32918_+\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.19143e-132
NZ_ALTH01000024.1\|WP_000122194.1\|38931_39273_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.38084e-52
NZ_ALTH01000024.1\|WP_000653357.1\|32907_33564_+\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	9.75792e-52
NZ_ALTH01000024.1\|WP_000438314.1\|41344_41761_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	4.64422e-78
NZ_ALTH01000024.1\|WP_000564823.1\|41885_42110_+\|ISAs1-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	5.97658e-17
NZ_ALTH01000024.1\|WP_001241816.1\|29803_30184_+\|hypothetical-protein	gnl\|CDD\|131381	TIGR02328, TIGR02328, conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown. [Hypothetical proteins, Conserved].	6.45558e-80

>NZ_ALTH01000024.1|WP_000590706.1|39259_39925_+|type-II-A-CRISPR-associated-protein-Csn2
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
>NZ_ALTH01000024.1|WP_000122194.1|38931_39273_+|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNTANNAMIGRLKVNNPKKGNITLLTVTEKQFARMVYLHGERNTSVANSDSRLVFLGDSYDQD
>NZ_ALTH01000024.1|WP_000929489.1|38065_38935_+|type-II-CRISPR-associated-endonuclease-Cas1
MAGWRTVVVNTHSKLSYKNNHLIFKDSYQTEMIHLSEIDILIMETTDIVLSTMLIKRLVDENILVIFCDDKRLPTAMLMPYYARHDSSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLGECSFFEKSQSIMNLYHDLEPFDPSNREGHAARIYFNTLFGNDFSREQDNPINAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIIYENRQSDFVKMKRELFSMFSETYSYNGKEMYLSNIVSDYTKKVIKSLNSDGNGIPEFRI
>NZ_ALTH01000024.1|WP_001040087.1|33951_38064_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNKPYSIGLDIGTNSVGWSIITDDYKVPAKKMRVLGNTDKEYIKKNLIGALLFDGGNTAADRRLKRTARRRYTRRRNRILYLQEIFAEEMSKVDDSFFHRLEDSFLVEEDKRGSKYPIFATLQEEKDYHEKFSTIYHLRKELADKKEKADLRLIYIALAHIIKFRGHFLIEDDSFDVRNTDISKQYQDFLEIFNTTFENNDLLSQNVDVEAILTDKISKSAKKDRILAQYPNQKSTGIFAEFLKLIVGNQADFKKYFNLEDKTPLQFAKDSYDEDLENLLGQIGDEFADLFSAAKKLYDSVLLSGILTVIDLSTKAPLSASMIQRYDEHREDLKQLKQFVKASLPEKYQEIFADSSKDGYAGYIEGKTNQEAFYKYLSKLLTKQEDSENFLEKIKNEDFLRKQRTFDNGSIPHQVHLTELKAIIRRQSEYYPFLKENQDRIEKILTFRIPYYIGPLAREKSDFAWMTRKTDDSIRPWNFEDLVDKEKSAEAFIHRMTNNDFYLPEEKVLPKHSLIYEKFTVYNELTKVRYKNEQGETYFFDSNIKQEIFDGVFKEHRKVSKKKLLDFLAKEYEEFRIVDVIGLDKENKAFNASLGTYHDLEKILDKDFLDNPDNESILEDIVQTLTLFEDREMIKKRLENYKDLFTESQLKKLYRRHYTGWGRLSAKLINGIRDKESQKTILDYLIDDGRSNRNFMQLINDDGLSFKSIISKAQAGSHSDNLKEVVGELAGSPAIKKGILQSLKIVDELVKVMGYEPEQIVVEMARENQTTNQGRRNSRQRYKLLDDGVKNLASDLNGNILKEYPTDNQALQNERLFLYYLQNGRDMYTGEALDIDNLSQYDIDHIIPQAFIKDDSIDNRVLVSSAKNRGKSDDVPSLEIVKDCKVFWKKLLDAKLMSQRKYDNLTKAERGGLTSDDKARFIQRQLVETRQITKHVARILDERFNNELDSKGRRIRKVKIVTLKSNLVSNFRKEFGFYKIREVNNYHHAHDAYLNAVVAKAILTKYPQLEPEFVYGDYPKYNSYKTRKSATEKLFFYSNIMNFFKTKVTLADGTVVVKDDIEVNNDTGEIVWDKKKHFATVRKVLSYPQNNIVKKTEIQTGGFSKESILAHGNSDKLIPRKTKDIYLDPKKYGGFDSPIVAYSVLVVADIKKGKAQKLKTVTELLGITIMERSRFEKNPSAFLESKGYLNIRADKLIILPKYSLFELENGRRRLLASAGELQKGNELALPTQFMKFLYLASRYNESKGKPEEIEKKQEFVNQHVSYFDDILQLINDFSKRVILADANLEKINKLYQDNKENISVDELANNIINLFTFTSLGAPAAFKFFDKIVDRKRYTSTKEVLNSTLIHQSITGLYETRIDLGKLGED
>NZ_ALTH01000024.1|WP_000653357.1|32907_33564_+|TIGR01906-family-membrane-protein
MKDKLLVVLTWIWIISLATLATIYIAWLIYPIEIQFLKLEKVVYLKAETIYYNFNKLMIYLTHPFISDLNMPSFPSSEDGLKHFADVKYLFTLAHGLFVILTFPVIYFLRRGWKQKSIFLYEGFFKIAIMLPIFIVVCAFLLGFDQFFTLFHEVLFPGDSTWQFNPLTDPVIWILPETFFLHCFIIFLLIYETITIILLIIGRKHLKLRKYKNKMQAL
>NZ_ALTH01000024.1|WP_000323544.1|32147_32918_+|TIGR01457-family-HAD-type-hydrolase
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
>NZ_ALTH01000024.1|WP_000523795.1|31409_32147_+|acyl-ACP-thioesterase
MGLLYRETYEVPFYESDTNHYMKLPQLLALALQISAKQSLKLGIGDDIVFKRYGLVWVVTDYIIDIERLPKHAEKIVIETEAKAHNKLLCYRYFYIYGEDGQKIITISSAFVLMDFKTRKIHPVLDDITSIYQSQRIKKVIRGPKYHPIGDSKVKQYHVRYFDLDMNGHVNNSKYLEWMYDVLDLDFLSSHIPKKIDLKYIKEIQYGTDIKSHWYQDGLVTRHDIIGGDAIHAQARIEWQEKKED
>NZ_ALTH01000024.1|WP_000914664.1|30275_31406_+|oxygen-independent-coproporphyrinogen-III-oxidase
MLKKPTSAYVHIPFCTQICYYCDFSKVFIKNQPVDAYLQALIREFRSYDITELRTLYIGGGTPTSISAVQLDYLLTELSRDLNLNTLEEFTIEANPGDLTVDKIEVLQKSAVNRVSLGVQTFNDKHLKRIGRSHNEAQIYSTIDALKTAGFQNISIDLIYALPGQTMDDVRSNVAKALSLNIPHLSLYSLILEHHTVFMNKMRRGKLHLPTEDLEAEMFEYIISEMERNGFEHYEISNFTKPGFESRHNLMYWDNVEYYGVGAGASGYLDGIRYRNRGPIQHYLKGVSEGNARLSEEVLSKNEMMEEELFLGLRKKEGVSIGKFEQKFGTSFEKRYGQIVQELQSDGLLKENNGFIQMTKKGLFLGDTVAEKFIVE
>NZ_ALTH01000024.1|WP_001241816.1|29803_30184_+|hypothetical-protein
MRLWHQDIIELLPRQQLLGQHRECCALRGNGWGRKHETVDYVFRYSPYRLFAYHQLVMEEMMERGYRVSKEWLIAEYRGMKCPRYDTLNPVDLETPIYPEHNQDYLQECLWNLKAKGIDLPINKIK
>NZ_ALTH01000024.1|WP_000159234.1|29407_29779_+|YbgA-family-protein
MTKEAELLWAKHKYLVLSKSQKIYLDIRQTLKSPNCTVLDVQSLIDQAVLLEESPSQVTNAYMHIWGYFKNKAERQEKEEFLTLLEKYRKTGYQRRKLLAFLKQLLAKYPNSYLQNSSIFEEE
>NZ_ALTH01000024.1|WP_000438314.1|41344_41761_+|nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
>NZ_ALTH01000024.1|WP_000564823.1|41885_42110_+|ISAs1-family-transposase
MIDFIISIDDCAVELDSRQSWKIRYPLSTILFLVFVCQLAGIETWKEMEDFIEMNEPLFATYVDLSEGCPSHDTL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_ALTH01000024_1	1.4\|40260\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40260-40289	30	JX409894	Streptococcus phage LYGO9, complete genome	12056-12085	0	1.0
NZ_ALTH01000024_1	1.4\|40260\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40260-40289	30	MK448956	Streptococcus phage Javan48, complete genome	35058-35087	0	1.0
NZ_ALTH01000024_1	1.4\|40260\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40260-40289	30	MK448749	Streptococcus phage Javan39, complete genome	36640-36669	0	1.0
NZ_ALTH01000024_1	1.4\|40260\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40260-40289	30	JX409895	Streptococcus phage JX01, complete genome	23903-23932	0	1.0
NZ_ALTH01000024_1	1.4\|40260\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40260-40289	30	MH853356	Streptococcus phage LF2, partial genome	26338-26367	0	1.0
NZ_ALTH01000024_1	1.5\|40326\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40326-40355	30	JX409894	Streptococcus phage LYGO9, complete genome	37492-37521	0	1.0
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MK448675	Streptococcus phage Javan129, complete genome	10387-10416	0	1.0
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MK448771	Streptococcus phage Javan481, complete genome	6321-6350	0	1.0
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MK448973	Streptococcus phage Javan522, complete genome	8226-8255	0	1.0
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MK448774	Streptococcus phage Javan487, complete genome	6306-6335	0	1.0
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MK448778	Streptococcus phage Javan493, complete genome	8241-8270	0	1.0
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MK448958	Streptococcus phage Javan486, complete genome	8550-8579	0	1.0
NZ_ALTH01000024_1	1.7\|40458\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40458-40487	30	MK448971	Streptococcus phage Javan52, complete genome	15323-15352	0	1.0
NZ_ALTH01000024_1	1.7\|40458\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40458-40487	30	MK448829	Streptococcus phage Javan7, complete genome	11857-11886	0	1.0
NZ_ALTH01000024_1	1.7\|40458\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40458-40487	30	MK448736	Streptococcus phage Javan35, complete genome	13006-13035	0	1.0
NZ_ALTH01000024_1	1.7\|40458\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40458-40487	30	MK448956	Streptococcus phage Javan48, complete genome	13910-13939	0	1.0
NZ_ALTH01000024_1	1.7\|40458\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40458-40487	30	MK448781	Streptococcus phage Javan5, complete genome	15028-15057	0	1.0
NZ_ALTH01000024_1	1.7\|40458\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40458-40487	30	MK448749	Streptococcus phage Javan39, complete genome	13910-13939	0	1.0
NZ_ALTH01000024_1	1.7\|40458\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40458-40487	30	MH853355	Streptococcus phage LF1, complete genome	2714-2743	0	1.0
NZ_ALTH01000024_1	1.7\|40458\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40458-40487	30	MK448938	Streptococcus phage Javan44, complete genome	13007-13036	0	1.0
NZ_ALTH01000024_1	1.7\|40458\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40458-40487	30	MH853356	Streptococcus phage LF2, partial genome	4076-4105	0	1.0
NZ_ALTH01000024_1	1.7\|40458\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40458-40487	30	MK448911	Streptococcus phage Javan34, complete genome	13006-13035	0	1.0
NZ_ALTH01000024_1	1.7\|40458\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40458-40487	30	MK448742	Streptococcus phage Javan37, complete genome	13505-13534	0	1.0
NZ_ALTH01000024_1	1.7\|40458\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40458-40487	30	MH853358	Streptococcus phage LF4, complete genome	2714-2743	0	1.0
NZ_ALTH01000024_1	1.7\|40458\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40458-40487	30	MK448916	Streptococcus phage Javan36, complete genome	13006-13035	0	1.0
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448956	Streptococcus phage Javan48, complete genome	13968-13997	0	1.0
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448749	Streptococcus phage Javan39, complete genome	13968-13997	0	1.0
NZ_ALTH01000024_1	1.9\|40590\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40590-40619	30	MK448711	Streptococcus phage Javan235, complete genome	7584-7613	0	1.0
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	MK448790	Streptococcus phage Javan515, complete genome	1426-1455	0	1.0
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	MK448957	Streptococcus phage Javan484, complete genome	1422-1451	0	1.0
NZ_ALTH01000024_1	1.1\|40062\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40062-40091	30	MK448971	Streptococcus phage Javan52, complete genome	19451-19480	1	0.967
NZ_ALTH01000024_1	1.1\|40062\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40062-40091	30	MK448956	Streptococcus phage Javan48, complete genome	18107-18136	1	0.967
NZ_ALTH01000024_1	1.1\|40062\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40062-40091	30	MK448851	Streptococcus phage Javan14, complete genome	18773-18802	1	0.967
NZ_ALTH01000024_1	1.2\|40128\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40128-40157	30	MK448729	Streptococcus phage Javan31, complete genome	12268-12297	1	0.967
NZ_ALTH01000024_1	1.2\|40128\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40128-40157	30	MK448691	Streptococcus phage Javan17, complete genome	12268-12297	1	0.967
NZ_ALTH01000024_1	1.2\|40128\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40128-40157	30	MK448948	Streptococcus phage Javan46, complete genome	12268-12297	1	0.967
NZ_ALTH01000024_1	1.2\|40128\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40128-40157	30	MK448768	Streptococcus phage Javan47, complete genome	13413-13442	1	0.967
NZ_ALTH01000024_1	1.4\|40260\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40260-40289	30	MK448971	Streptococcus phage Javan52, complete genome	37042-37071	1	0.967
NZ_ALTH01000024_1	1.4\|40260\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40260-40289	30	MK448829	Streptococcus phage Javan7, complete genome	31735-31764	1	0.967
NZ_ALTH01000024_1	1.4\|40260\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40260-40289	30	MH853355	Streptococcus phage LF1, complete genome	22592-22621	1	0.967
NZ_ALTH01000024_1	1.4\|40260\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40260-40289	30	MH853358	Streptococcus phage LF4, complete genome	22592-22621	1	0.967
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MK448850	Streptococcus phage Javan132, complete genome	10906-10935	1	0.967
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MK448851	Streptococcus phage Javan14, complete genome	11717-11746	1	0.967
NZ_ALTH01000024_1	1.4\|40260\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40260-40289	30	MK448837	Streptococcus phage Javan10, complete genome	30270-30299	2	0.933
NZ_ALTH01000024_1	1.5\|40326\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40326-40355	30	MK448845	Streptococcus phage Javan118, complete genome	8851-8880	2	0.933
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MK448681	Streptococcus phage Javan141, complete genome	6109-6138	2	0.933
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MK448944	Streptococcus phage Javan452, complete genome	10585-10614	2	0.933
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MK448672	Streptococcus phage Javan117, complete genome	6167-6196	2	0.933
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MK448849	Streptococcus phage Javan128, complete genome	6260-6289	2	0.933
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MH853356	Streptococcus phage LF2, partial genome	7489-7518	2	0.933
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MK448933	Streptococcus phage Javan420, complete genome	10082-10111	2	0.933
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MK448845	Streptococcus phage Javan118, complete genome	8048-8077	2	0.933
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MK448673	Streptococcus phage Javan119, complete genome	9523-9552	2	0.933
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448704	Streptococcus phage Javan213, complete genome	11298-11327	2	0.933
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448734	Streptococcus phage Javan347, complete genome	8977-9006	2	0.933
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448876	Streptococcus phage Javan214, complete genome	11800-11829	2	0.933
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448796	Streptococcus phage Javan53, complete genome	17381-17410	3	0.9
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448822	Streptococcus phage Javan629, complete genome	13388-13417	3	0.9
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448736	Streptococcus phage Javan35, complete genome	13064-13093	4	0.867
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448781	Streptococcus phage Javan5, complete genome	15086-15115	4	0.867
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448938	Streptococcus phage Javan44, complete genome	13065-13094	4	0.867
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	HG424323	Streptococcus phage 20617 complete prophage genome	15101-15130	4	0.867
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448911	Streptococcus phage Javan34, complete genome	13064-13093	4	0.867
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448916	Streptococcus phage Javan36, complete genome	13064-13093	4	0.867
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448755	Streptococcus phage Javan423, complete genome	12783-12812	4	0.867
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448756	Streptococcus phage Javan425, complete genome	12783-12812	4	0.867
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448707	Streptococcus phage Javan227, complete genome	16383-16412	4	0.867
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448954	Streptococcus phage Javan476, complete genome	12435-12464	4	0.867
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK449012	Streptococcus phage Javan94, complete genome	12477-12506	4	0.867
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448680	Streptococcus phage Javan139, complete genome	10668-10697	4	0.867
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	NC_000872	Streptococcus phage Sfi21, complete genome	36726-36755	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	KY705251	Streptococcus phage P0091, complete genome	31406-31435	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	KY705273	Streptococcus phage P7602, complete genome	33980-34009	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MH937473	Streptococcus phage CHPC929, complete genome	35982-36011	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MH892360	Streptococcus phage SW11, complete genome	33275-33304	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MH892353	Streptococcus phage SW2, complete genome	34246-34275	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	KY705277	Streptococcus phage P7951, complete genome	31360-31389	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	NC_000871	Streptococcus phage Sfi19, complete genome	35421-35450	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MH937464	Streptococcus phage CHPC869, complete genome	34213-34242	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MH937480	Streptococcus phage CHPC954, complete genome	34114-34143	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448753	Streptococcus phage Javan407, complete genome	12528-12557	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MH937475	Streptococcus phage CHPC931, complete genome	33663-33692	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MF417967	Uncultured Caudovirales phage clone 3S_16, partial genome	7733-7762	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	AF158601	Streptococcus thermophilus bacteriophage SFi18 lysin, gp111, gp183, gp47, gp54, gp71, gp145, gp69, gp40, gp229, gp157, gp233, putative helicase, gp151, gp271, putative primase, gp143, gp106, gp89, gp57, gp51, gp66, gp192, putative DNA binding protein, gp99, and gp235 genes, complete cds	12499-12528	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	KY705268	Streptococcus phage P7571, complete genome	32083-32112	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	KY705269	Streptococcus phage P7572, complete genome	30586-30615	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	KY705281	Streptococcus phage P7955, complete genome	33997-34026	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	AF115103	Streptococcus thermophilus bacteriophage Sfi21, complete genome	36726-36755	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	NC_013645	Streptococcus phage Abc2, complete genome	31500-31529	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	AF115102	Streptococcus thermophilus bacteriophage Sfi19, complete genome	35421-35450	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	FJ226752	Streptococcus phage ALQ13.2, complete genome	32704-32733	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	NC_002214	Streptococcus thermophilus bacteriophage Sfi11, complete genome	37427-37456	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	KY705272	Streptococcus phage P7601, complete genome	32090-32119	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	KY705271	Streptococcus phage P7574, complete genome	32891-32920	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MH937505	Streptococcus phage CHPC1109, complete genome	30694-30723	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MH937469	Streptococcus phage CHPC919, complete genome	33754-33783	5	0.833
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MH937491	Streptococcus phage CHPC1037, partial genome	33178-33207	5	0.833
NZ_ALTH01000024_1	1.9\|40590\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40590-40619	30	MK448750	Streptococcus phage Javan393, complete genome	3056-3085	5	0.833
NZ_ALTH01000024_1	1.3\|40194\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40194-40223	30	MT900488	Streptococcus phage SA01, complete genome	36031-36060	6	0.8
NZ_ALTH01000024_1	1.7\|40458\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40458-40487	30	NZ_CP010112	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence	193083-193112	6	0.8
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448896	Streptococcus phage Javan278, complete genome	6108-6137	6	0.8
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448757	Streptococcus phage Javan427, complete genome	14224-14253	6	0.8
NZ_ALTH01000024_1	1.9\|40590\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40590-40619	30	KJ018211	Shewanella sp. phage 1/40, complete genome	81048-81077	6	0.8
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	NC_018685	Bacillus thuringiensis MC28 plasmid pMC95, complete sequence	82837-82866	6	0.8
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	NZ_CP006727	Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence	30951-30980	7	0.767
NZ_ALTH01000024_1	1.8\|40524\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40524-40553	30	MK448885	Streptococcus phage Javan252, complete genome	13038-13067	7	0.767
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	NZ_CP034168	Enterococcus avium strain 352 plasmid unnamed, complete sequence	14259-14288	7	0.767
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	180131-180160	7	0.767
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	130740-130769	7	0.767
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	124624-124653	7	0.767
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	2565-2594	7	0.767
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	1843-1872	7	0.767
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	40599-40628	7	0.767
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	NC_015417	Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence	153049-153078	7	0.767
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	130740-130769	7	0.767
NZ_ALTH01000024_1	1.1\|40062\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40062-40091	30	NC_017073	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC3, complete sequence	64611-64640	8	0.733
NZ_ALTH01000024_1	1.1\|40062\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40062-40091	30	NZ_CP034685	Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence	182880-182909	8	0.733
NZ_ALTH01000024_1	1.1\|40062\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40062-40091	30	NZ_CP043832	Bacillus sp. BS98 plasmid unnamed2	71255-71284	8	0.733
NZ_ALTH01000024_1	1.1\|40062\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40062-40091	30	NZ_CP020434	Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence	216274-216303	8	0.733
NZ_ALTH01000024_1	1.3\|40194\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40194-40223	30	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	320237-320266	8	0.733
NZ_ALTH01000024_1	1.6\|40392\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40392-40421	30	MG592660	Vibrio phage 1.293.O._10N.261.52.E1, partial genome	7362-7391	8	0.733
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	NC_018878	Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence	27063-27092	8	0.733
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	NC_048665	Clostridium phage phiCDHM14, complete genome	22262-22291	8	0.733
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	KU057941	Clostridium phage CDSH1, complete genome	28658-28687	8	0.733
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	MK473382	Clostridium phage JD032, complete genome	12174-12203	8	0.733
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	LN881738	Escherichia phage slur17, complete genome	33369-33398	8	0.733
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	NC_028905	Clostridium phage phiCD111, complete genome	28432-28461	8	0.733
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	HG796225	Clostridium phage phiCDHM13 complete genome	21762-21791	8	0.733
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	LN681538	Clostridium phage phiCD481-1, complete genome	21502-21531	8	0.733
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	HG798901	Clostridium phage phiCDHM11 complete genome	21762-21791	8	0.733
NZ_ALTH01000024_1	1.3\|40194\|30\|NZ_ALTH01000024\|PILER-CR,CRISPRCasFinder,CRT	40194-40223	30	NZ_CP006906	Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence	90021-90050	9	0.7
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	NC_028838	Clostridium phage phiCD506, complete genome	22083-22112	9	0.7
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	HM568888	Clostridium phage phiCD38-2, complete genome	28154-28183	9	0.7
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	NC_028958	Clostridium phage phiCD146, complete genome	27716-27745	9	0.7
NZ_ALTH01000024_1	1.10\|40656\|30\|NZ_ALTH01000024\|CRISPRCasFinder,CRT	40656-40685	30	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	640927-640956	10	0.667

1. spacer 1.4|40260|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 0, identity: 1.0

caattgattgccgttaaaaccgatagagga	CRISPR spacer
caattgattgccgttaaaaccgatagagga	Protospacer
******************************

2. spacer 1.4|40260|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 0, identity: 1.0

caattgattgccgttaaaaccgatagagga	CRISPR spacer
caattgattgccgttaaaaccgatagagga	Protospacer
******************************

3. spacer 1.4|40260|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 0, identity: 1.0

caattgattgccgttaaaaccgatagagga	CRISPR spacer
caattgattgccgttaaaaccgatagagga	Protospacer
******************************

4. spacer 1.4|40260|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to JX409895 (Streptococcus phage JX01, complete genome) position: , mismatch: 0, identity: 1.0

caattgattgccgttaaaaccgatagagga	CRISPR spacer
caattgattgccgttaaaaccgatagagga	Protospacer
******************************

5. spacer 1.4|40260|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 0, identity: 1.0

caattgattgccgttaaaaccgatagagga	CRISPR spacer
caattgattgccgttaaaaccgatagagga	Protospacer
******************************

6. spacer 1.5|40326|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 0, identity: 1.0

tgaattccacgccaccaagtaaacctgtga	CRISPR spacer
tgaattccacgccaccaagtaaacctgtga	Protospacer
******************************

7. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 0, identity: 1.0

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
acaagaaacaaacagccttgatgacttaat	Protospacer
******************************

8. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448771 (Streptococcus phage Javan481, complete genome) position: , mismatch: 0, identity: 1.0

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
acaagaaacaaacagccttgatgacttaat	Protospacer
******************************

9. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448973 (Streptococcus phage Javan522, complete genome) position: , mismatch: 0, identity: 1.0

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
acaagaaacaaacagccttgatgacttaat	Protospacer
******************************

10. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448774 (Streptococcus phage Javan487, complete genome) position: , mismatch: 0, identity: 1.0

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
acaagaaacaaacagccttgatgacttaat	Protospacer
******************************

11. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 0, identity: 1.0

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
acaagaaacaaacagccttgatgacttaat	Protospacer
******************************

12. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 0, identity: 1.0

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
acaagaaacaaacagccttgatgacttaat	Protospacer
******************************

13. spacer 1.7|40458|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448971 (Streptococcus phage Javan52, complete genome) position: , mismatch: 0, identity: 1.0

taatacttttacaatatgtgttttcactac	CRISPR spacer
taatacttttacaatatgtgttttcactac	Protospacer
******************************

14. spacer 1.7|40458|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 0, identity: 1.0

taatacttttacaatatgtgttttcactac	CRISPR spacer
taatacttttacaatatgtgttttcactac	Protospacer
******************************

15. spacer 1.7|40458|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448736 (Streptococcus phage Javan35, complete genome) position: , mismatch: 0, identity: 1.0

taatacttttacaatatgtgttttcactac	CRISPR spacer
taatacttttacaatatgtgttttcactac	Protospacer
******************************

16. spacer 1.7|40458|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 0, identity: 1.0

taatacttttacaatatgtgttttcactac	CRISPR spacer
taatacttttacaatatgtgttttcactac	Protospacer
******************************

17. spacer 1.7|40458|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 0, identity: 1.0

taatacttttacaatatgtgttttcactac	CRISPR spacer
taatacttttacaatatgtgttttcactac	Protospacer
******************************

18. spacer 1.7|40458|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 0, identity: 1.0

taatacttttacaatatgtgttttcactac	CRISPR spacer
taatacttttacaatatgtgttttcactac	Protospacer
******************************

19. spacer 1.7|40458|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 0, identity: 1.0

taatacttttacaatatgtgttttcactac	CRISPR spacer
taatacttttacaatatgtgttttcactac	Protospacer
******************************

20. spacer 1.7|40458|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448938 (Streptococcus phage Javan44, complete genome) position: , mismatch: 0, identity: 1.0

taatacttttacaatatgtgttttcactac	CRISPR spacer
taatacttttacaatatgtgttttcactac	Protospacer
******************************

21. spacer 1.7|40458|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 0, identity: 1.0

taatacttttacaatatgtgttttcactac	CRISPR spacer
taatacttttacaatatgtgttttcactac	Protospacer
******************************

22. spacer 1.7|40458|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448911 (Streptococcus phage Javan34, complete genome) position: , mismatch: 0, identity: 1.0

taatacttttacaatatgtgttttcactac	CRISPR spacer
taatacttttacaatatgtgttttcactac	Protospacer
******************************

23. spacer 1.7|40458|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448742 (Streptococcus phage Javan37, complete genome) position: , mismatch: 0, identity: 1.0

taatacttttacaatatgtgttttcactac	CRISPR spacer
taatacttttacaatatgtgttttcactac	Protospacer
******************************

24. spacer 1.7|40458|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 0, identity: 1.0

taatacttttacaatatgtgttttcactac	CRISPR spacer
taatacttttacaatatgtgttttcactac	Protospacer
******************************

25. spacer 1.7|40458|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448916 (Streptococcus phage Javan36, complete genome) position: , mismatch: 0, identity: 1.0

taatacttttacaatatgtgttttcactac	CRISPR spacer
taatacttttacaatatgtgttttcactac	Protospacer
******************************

26. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 0, identity: 1.0

aagtgccacagtttgtggctgattggattg	CRISPR spacer
aagtgccacagtttgtggctgattggattg	Protospacer
******************************

27. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 0, identity: 1.0

aagtgccacagtttgtggctgattggattg	CRISPR spacer
aagtgccacagtttgtggctgattggattg	Protospacer
******************************

28. spacer 1.9|40590|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448711 (Streptococcus phage Javan235, complete genome) position: , mismatch: 0, identity: 1.0

tcagcgagatgctctaagtaagcatgttga	CRISPR spacer
tcagcgagatgctctaagtaagcatgttga	Protospacer
******************************

29. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 0, identity: 1.0

tcttctttttaattcttctaacactccatc	CRISPR spacer
tcttctttttaattcttctaacactccatc	Protospacer
******************************

30. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to MK448957 (Streptococcus phage Javan484, complete genome) position: , mismatch: 0, identity: 1.0

tcttctttttaattcttctaacactccatc	CRISPR spacer
tcttctttttaattcttctaacactccatc	Protospacer
******************************

31. spacer 1.1|40062|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448971 (Streptococcus phage Javan52, complete genome) position: , mismatch: 1, identity: 0.967

aaagtcatctttattgactgtttttccttc	CRISPR spacer
aaaatcatctttattgactgtttttccttc	Protospacer
***.**************************

32. spacer 1.1|40062|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 1, identity: 0.967

aaagtcatctttattgactgtttttccttc	CRISPR spacer
aaaatcatctttattgactgtttttccttc	Protospacer
***.**************************

33. spacer 1.1|40062|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 1, identity: 0.967

aaagtcatctttattgactgtttttccttc	CRISPR spacer
aaaatcatctttattgactgtttttccttc	Protospacer
***.**************************

34. spacer 1.2|40128|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448729 (Streptococcus phage Javan31, complete genome) position: , mismatch: 1, identity: 0.967

atttttctttaggctacgacggataagctt	CRISPR spacer
atttttctttaagctacgacggataagctt	Protospacer
***********.******************

35. spacer 1.2|40128|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448691 (Streptococcus phage Javan17, complete genome) position: , mismatch: 1, identity: 0.967

atttttctttaggctacgacggataagctt	CRISPR spacer
atttttctttaagctacgacggataagctt	Protospacer
***********.******************

36. spacer 1.2|40128|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448948 (Streptococcus phage Javan46, complete genome) position: , mismatch: 1, identity: 0.967

atttttctttaggctacgacggataagctt	CRISPR spacer
atttttctttaagctacgacggataagctt	Protospacer
***********.******************

37. spacer 1.2|40128|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448768 (Streptococcus phage Javan47, complete genome) position: , mismatch: 1, identity: 0.967

atttttctttaggctacgacggataagctt	CRISPR spacer
atttttctttaagctacgacggataagctt	Protospacer
***********.******************

38. spacer 1.4|40260|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448971 (Streptococcus phage Javan52, complete genome) position: , mismatch: 1, identity: 0.967

caattgattgccgttaaaaccgatagagga	CRISPR spacer
taattgattgccgttaaaaccgatagagga	Protospacer
.*****************************

39. spacer 1.4|40260|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 1, identity: 0.967

caattgattgccgttaaaaccgatagagga	CRISPR spacer
taattgattgccgttaaaaccgatagagga	Protospacer
.*****************************

40. spacer 1.4|40260|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 1, identity: 0.967

caattgattgccgttaaaaccgatagagga	CRISPR spacer
taattgattgccgttaaaaccgatagagga	Protospacer
.*****************************

41. spacer 1.4|40260|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 1, identity: 0.967

caattgattgccgttaaaaccgatagagga	CRISPR spacer
taattgattgccgttaaaaccgatagagga	Protospacer
.*****************************

42. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 1, identity: 0.967

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
acaagaaacaaacagccttgatgatttaat	Protospacer
************************.*****

43. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 1, identity: 0.967

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
acaagaaacaaacagccttgatgatttaat	Protospacer
************************.*****

44. spacer 1.4|40260|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 2, identity: 0.933

caattgattgccgttaaaaccgatagagga	CRISPR spacer
caattgattgccattaaaaccgatcgagga	Protospacer
************.*********** *****

45. spacer 1.5|40326|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448845 (Streptococcus phage Javan118, complete genome) position: , mismatch: 2, identity: 0.933

tgaattccacgccaccaagtaaacctgtga	CRISPR spacer
tgaattccacaccaccaattaaacctgtga	Protospacer
**********.******* ***********

46. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 2, identity: 0.933

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
acaagaaacaaatagccttgacgacttaat	Protospacer
************.********.********

47. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 2, identity: 0.933

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
acaagaaacaaacagccttgacgacttgat	Protospacer
*********************.*****.**

48. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 2, identity: 0.933

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
acaagaaacaaacagccttgacgacttgat	Protospacer
*********************.*****.**

49. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 2, identity: 0.933

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
acaagaaacaaacagccttgacgacttgat	Protospacer
*********************.*****.**

50. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 2, identity: 0.933

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
acaagaaacaaacagtcttgatgatttaat	Protospacer
***************.********.*****

51. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448933 (Streptococcus phage Javan420, complete genome) position: , mismatch: 2, identity: 0.933

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
accagaaacaaacagccttgacgacttaat	Protospacer
** ******************.********

52. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448845 (Streptococcus phage Javan118, complete genome) position: , mismatch: 2, identity: 0.933

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
acaagaaacaaatagccttgacgacttaat	Protospacer
************.********.********

53. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448673 (Streptococcus phage Javan119, complete genome) position: , mismatch: 2, identity: 0.933

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
acaagaaacaaatagccttgacgacttaat	Protospacer
************.********.********

54. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448704 (Streptococcus phage Javan213, complete genome) position: , mismatch: 2, identity: 0.933

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatttgtggctgattggattg	Protospacer
 *********.*******************

55. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448734 (Streptococcus phage Javan347, complete genome) position: , mismatch: 2, identity: 0.933

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacagtttgtggcggattggattg	Protospacer
 ****************** **********

56. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448876 (Streptococcus phage Javan214, complete genome) position: , mismatch: 2, identity: 0.933

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatttgtggctgattggattg	Protospacer
 *********.*******************

57. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 3, identity: 0.9

aagtgccacagtttgtggctgattggattg	CRISPR spacer
aagtgccacagtttgttgctgattggtatg	Protospacer
**************** *********  **

58. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448822 (Streptococcus phage Javan629, complete genome) position: , mismatch: 3, identity: 0.9

aagtgccacagtttgtggctgattggattg	CRISPR spacer
aagtgccacagtttgttgctgattggtatg	Protospacer
**************** *********  **

59. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448736 (Streptococcus phage Javan35, complete genome) position: , mismatch: 4, identity: 0.867

aagtgccacagtttgtggctgattggattg	CRISPR spacer
aagtgccacggtttgtggctgattggtacg	Protospacer
*********.****************  .*

60. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 4, identity: 0.867

aagtgccacagtttgtggctgattggattg	CRISPR spacer
aagtgccacggtttgtggctgattggtacg	Protospacer
*********.****************  .*

61. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448938 (Streptococcus phage Javan44, complete genome) position: , mismatch: 4, identity: 0.867

aagtgccacagtttgtggctgattggattg	CRISPR spacer
aagtgccacggtttgtggctgattggtacg	Protospacer
*********.****************  .*

62. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to HG424323 (Streptococcus phage 20617 complete prophage genome) position: , mismatch: 4, identity: 0.867

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagttccacaatttgtggctgattggattt	Protospacer
 *** *****.******************

63. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448911 (Streptococcus phage Javan34, complete genome) position: , mismatch: 4, identity: 0.867

aagtgccacagtttgtggctgattggattg	CRISPR spacer
aagtgccacggtttgtggctgattggtacg	Protospacer
*********.****************  .*

64. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448916 (Streptococcus phage Javan36, complete genome) position: , mismatch: 4, identity: 0.867

aagtgccacagtttgtggctgattggattg	CRISPR spacer
aagtgccacggtttgtggctgattggtacg	Protospacer
*********.****************  .*

65. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448755 (Streptococcus phage Javan423, complete genome) position: , mismatch: 4, identity: 0.867

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccgaagtttgtggctgattggatag	Protospacer
 ******. ******************* *

66. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448756 (Streptococcus phage Javan425, complete genome) position: , mismatch: 4, identity: 0.867

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccgaagtttgtggctgattggatag	Protospacer
 ******. ******************* *

67. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448707 (Streptococcus phage Javan227, complete genome) position: , mismatch: 4, identity: 0.867

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatttgtggctgattggtatg	Protospacer
 *********.***************  **

68. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 4, identity: 0.867

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgcctcagtttgtggctgattgggtag	Protospacer
 ****** ******************.* *

69. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK449012 (Streptococcus phage Javan94, complete genome) position: , mismatch: 4, identity: 0.867

aagtgccacagtttgtggctgattggattg	CRISPR spacer
aagttccacaatttgtggctgattggtatg	Protospacer
**** *****.***************  **

70. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448680 (Streptococcus phage Javan139, complete genome) position: , mismatch: 4, identity: 0.867

aagtgccacagtttgtggctgattggattg	CRISPR spacer
aagtcccgcagtttgtggctgattggctag	Protospacer
**** **.****************** * *

71. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to NC_000872 (Streptococcus phage Sfi21, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

72. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to KY705251 (Streptococcus phage P0091, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
cagtgccaaagtttgtggcggattggtatg	Protospacer
 ******* ********** ******  **

73. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to KY705273 (Streptococcus phage P7602, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

74. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MH937473 (Streptococcus phage CHPC929, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

75. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MH892360 (Streptococcus phage SW11, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

76. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MH892353 (Streptococcus phage SW2, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtaccgcagtttgtggctgattggtatg	Protospacer
 ***.**.******************  **

77. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to KY705277 (Streptococcus phage P7951, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

78. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to NC_000871 (Streptococcus phage Sfi19, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

79. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MH937464 (Streptococcus phage CHPC869, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

80. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MH937480 (Streptococcus phage CHPC954, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

81. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448753 (Streptococcus phage Javan407, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacagtttgtggcggagtggtatg	Protospacer
 ****************** ** ***  **

82. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MH937475 (Streptococcus phage CHPC931, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

83. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MF417967 (Uncultured Caudovirales phage clone 3S_16, partial genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
caatcccgcagtttgtggcggattggattg	Protospacer
 *.* **.*********** **********

84. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to AF158601 (Streptococcus thermophilus bacteriophage SFi18 lysin, gp111, gp183, gp47, gp54, gp71, gp145, gp69, gp40, gp229, gp157, gp233, putative helicase, gp151, gp271, putative primase, gp143, gp106, gp89, gp57, gp51, gp66, gp192, putative DNA binding protein, gp99, and gp235 genes, complete cds) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

85. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to KY705268 (Streptococcus phage P7571, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

86. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to KY705269 (Streptococcus phage P7572, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

87. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to KY705281 (Streptococcus phage P7955, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

88. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to AF115103 (Streptococcus thermophilus bacteriophage Sfi21, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

89. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to NC_013645 (Streptococcus phage Abc2, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
cagtgccgcagtttgtggcggattgggtag	Protospacer
 ******.*********** ******.* *

90. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to AF115102 (Streptococcus thermophilus bacteriophage Sfi19, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

91. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to FJ226752 (Streptococcus phage ALQ13.2, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

92. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to NC_002214 (Streptococcus thermophilus bacteriophage Sfi11, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

93. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to KY705272 (Streptococcus phage P7601, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

94. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to KY705271 (Streptococcus phage P7574, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

95. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MH937505 (Streptococcus phage CHPC1109, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

96. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MH937469 (Streptococcus phage CHPC919, complete genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

97. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MH937491 (Streptococcus phage CHPC1037, partial genome) position: , mismatch: 5, identity: 0.833

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tagtgccacaatatgtggctgattggtatg	Protospacer
 *********.* *************  **

98. spacer 1.9|40590|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448750 (Streptococcus phage Javan393, complete genome) position: , mismatch: 5, identity: 0.833

tcagcgagatgctctaagtaagcatgttga	CRISPR spacer
ttctcgagatgcactaagtaaacatgttga	Protospacer
*.  ******** ********.********

99. spacer 1.3|40194|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MT900488 (Streptococcus phage SA01, complete genome) position: , mismatch: 6, identity: 0.8

taagaattttagatactctacttgaatgct	CRISPR spacer
taagagttttagatacgctacttgaaacaa	Protospacer
*****.********** *********

100. spacer 1.7|40458|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010112 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence) position: , mismatch: 6, identity: 0.8

taatact----tttacaatatgtgttttcactac	CRISPR spacer
----actttgattttcaatatatgttttcactac	Protospacer
    ***    *** ******.************

101. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448896 (Streptococcus phage Javan278, complete genome) position: , mismatch: 6, identity: 0.8

aagtgccacagtttgtggctgattggattg	CRISPR spacer
tcattccgcagtttgtggccgattggattg	Protospacer
  .* **.***********.**********

102. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448757 (Streptococcus phage Javan427, complete genome) position: , mismatch: 6, identity: 0.8

aagtgccacagtttgtggctgattggattg	CRISPR spacer
aagttaagaagtttgtggctgaatggattg	Protospacer
****   . ************* *******

103. spacer 1.9|40590|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to KJ018211 (Shewanella sp. phage 1/40, complete genome) position: , mismatch: 6, identity: 0.8

tcagcga-gatgctctaagtaagcatgttga	CRISPR spacer
-cagtagtgatgctataagtaagcatgtaga	Protospacer
 ***... ****** ************* **

104. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to NC_018685 (Bacillus thuringiensis MC28 plasmid pMC95, complete sequence) position: , mismatch: 6, identity: 0.8

tcttctttttaattcttctaacactccatc	CRISPR spacer
actattttttaattcttctaacattccttt	Protospacer
 ** .******************.*** *.

105. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006727 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence) position: , mismatch: 7, identity: 0.767

aagtgccacagtttgtggctgattggattg	CRISPR spacer
aagtgccaaagattgtggctgatgcgaagc	Protospacer
******** ** ***********  **

106. spacer 1.8|40524|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MK448885 (Streptococcus phage Javan252, complete genome) position: , mismatch: 7, identity: 0.767

aagtgccacagtttgtggctgattggattg	CRISPR spacer
ctattccgaagtttgtggcggattggattg	Protospacer
  .* **. ********** **********

107. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to NZ_CP034168 (Enterococcus avium strain 352 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tcttctttttaattcttctaacactccatc	CRISPR spacer
attggtttttaattcttctaatactgcatt	Protospacer
 .*  ****************.*** ***.

108. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

tcttctttttaattcttctaacactccatc	CRISPR spacer
tcttgtttttaactcttctaacaaagcgcc	Protospacer
**** *******.**********   *..*

109. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 7, identity: 0.767

tcttctttttaattcttctaacactccatc	CRISPR spacer
tcttgtttttaactcttctaacaaagcgcc	Protospacer
**** *******.**********   *..*

110. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 7, identity: 0.767

tcttctttttaattcttctaacactccatc	CRISPR spacer
tcttgtttttaactcttctaacaaagcgcc	Protospacer
**** *******.**********   *..*

111. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

tcttctttttaattcttctaacactccatc	CRISPR spacer
tcttgtttttaactcttctaacaaagcgcc	Protospacer
**** *******.**********   *..*

112. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 7, identity: 0.767

tcttctttttaattcttctaacactccatc	CRISPR spacer
tcttgtttttaactcttctaacaaagcgcc	Protospacer
**** *******.**********   *..*

113. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.767

tcttctttttaattcttctaacactccatc	CRISPR spacer
tcttgtttttaactcttctaacaaagcgcc	Protospacer
**** *******.**********   *..*

114. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to NC_015417 (Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence) position: , mismatch: 7, identity: 0.767

tcttctttttaattcttctaacactccatc	CRISPR spacer
ttccttttttaattcttctaatactcgttc	Protospacer
*....****************.****  **

115. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

tcttctttttaattcttctaacactccatc	CRISPR spacer
tcttgtttttaactcttctaacaaagcgcc	Protospacer
**** *******.**********   *..*

116. spacer 1.1|40062|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to NC_017073 (Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC3, complete sequence) position: , mismatch: 8, identity: 0.733

aaagtcatctttattgactgtttttccttc	CRISPR spacer
ggcaagatctttattgcctgcttttccttc	Protospacer
.. .  ********** ***.*********

117. spacer 1.1|40062|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034685 (Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence) position: , mismatch: 8, identity: 0.733

aaagtcatctttattgactgtttttccttc	CRISPR spacer
aggtagatctatattgactgttgttccttt	Protospacer
*..   **** *********** ******.

118. spacer 1.1|40062|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043832 (Bacillus sp. BS98 plasmid unnamed2) position: , mismatch: 8, identity: 0.733

aaagtcatctttattgactgtttttccttc	CRISPR spacer
aggtagatctatattgactgttgttccttt	Protospacer
*..   **** *********** ******.

119. spacer 1.1|40062|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020434 (Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.733

aaagtcatctttattgactgtttttccttc	CRISPR spacer
aggtagatctatattgactgttgttccttt	Protospacer
*..   **** *********** ******.

120. spacer 1.3|40194|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

taagaattttagatactctacttgaatgct	CRISPR spacer
atagaatttttgatactctactttcaatcc	Protospacer
  ******** ************  *  *.

121. spacer 1.6|40392|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to MG592660 (Vibrio phage 1.293.O._10N.261.52.E1, partial genome) position: , mismatch: 8, identity: 0.733

acaagaaacaaacagccttgatgacttaat	CRISPR spacer
aggccaaacaatcagcctagatgacttacg	Protospacer
* .  ****** ****** *********

122. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to NC_018878 (Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence) position: , mismatch: 8, identity: 0.733

tcttctttttaattcttctaacactccatc	CRISPR spacer
ctgtagtttaaattcatctaacactccatt	Protospacer
.. *  *** ***** *************.

123. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 8, identity: 0.733

tcttctttttaattcttctaacactccatc	CRISPR spacer
ttttcttttcaattcttctaacatattagt	Protospacer
*.*******.*************. ..* .

124. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 8, identity: 0.733

tcttctttttaattcttctaacactccatc	CRISPR spacer
ttttcttttcaattcttctaacatattagt	Protospacer
*.*******.*************. ..* .

125. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 8, identity: 0.733

tcttctttttaattcttctaacactccatc	CRISPR spacer
ttttcttttcaattcttctaacatattagt	Protospacer
*.*******.*************. ..* .

126. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 8, identity: 0.733

tcttctttttaattcttctaacactccatc	CRISPR spacer
ttttcttttcaattcttctaacatattagt	Protospacer
*.*******.*************. ..* .

127. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 8, identity: 0.733

tcttctttttaattcttctaacactccatc	CRISPR spacer
ttttcttttcaattcttctaacatattagt	Protospacer
*.*******.*************. ..* .

128. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 8, identity: 0.733

tcttctttttaattcttctaacactccatc	CRISPR spacer
ttttcttttcaattcttctaacatattagt	Protospacer
*.*******.*************. ..* .

129. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 8, identity: 0.733

tcttctttttaattcttctaacactccatc	CRISPR spacer
ttttcttttcaattcttctaacatattagt	Protospacer
*.*******.*************. ..* .

130. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 8, identity: 0.733

tcttctttttaattcttctaacactccatc	CRISPR spacer
ttttcttttcaattcttctaacatattagt	Protospacer
*.*******.*************. ..* .

131. spacer 1.3|40194|30|NZ_ALTH01000024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006906 (Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence) position: , mismatch: 9, identity: 0.7

taagaattttagatactctacttgaatgct	CRISPR spacer
atttaattttagatacactacttaaattaa	Protospacer
    ************ ******.***

132. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 9, identity: 0.7

tcttctttttaattcttctaacactccatc	CRISPR spacer
ctttcttttcaattcttctaacatattagt	Protospacer
..*******.*************. ..* .

133. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 9, identity: 0.7

tcttctttttaattcttctaacactccatc	CRISPR spacer
ctttcttttcaattcttctaacatattagt	Protospacer
..*******.*************. ..* .

134. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 9, identity: 0.7

tcttctttttaattcttctaacactccatc	CRISPR spacer
ctttcttttcaattcttctaacatattagt	Protospacer
..*******.*************. ..* .

135. spacer 1.10|40656|30|NZ_ALTH01000024|CRISPRCasFinder,CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 10, identity: 0.667

tcttctttttaattcttctaacactccatc	CRISPR spacer
aagaatttttaattcttctaagactctcat	Protospacer
     **************** ****.  .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_ALTH01000026

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4142 : 11696

Streptococcus_phage(50.0%)

transposase,integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000353149.1\|4142_4799_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-22	31.8
WP_000594360.1\|4808_6086_-	ABC transporter permease	NA	NA	NA	NA
WP_000508795.1\|6827_6989_+	NINE protein	NA	NA	NA	NA
WP_001867107.1\|7161_7371_-\|transposase	transposase	NA	NA	NA	NA
WP_001872364.1\|7496_7754_-\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	5.8e-11	43.5
WP_001122304.1\|7778_7979_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_000640620.1\|8140_8545_-	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	1.3e-20	43.6
WP_001872365.1\|8544_8811_+	hypothetical protein	Q77YW7	Streptococcus_phage	9.2e-20	65.2
WP_071659971.1\|8813_9428_+\|integrase	site-specific integrase	F8HGP4	Streptococcus_phage	9.2e-55	60.7
WP_001068667.1\|9572_9920_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000595708.1\|10499_11696_-	voltage-gated chloride channel family protein	A0A1X9I5Z9	Streptococcus_phage	4.6e-103	54.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_ALTH01000029

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

84905 : 95177

Streptococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000638895.1\|84905_86051_-	cysteine desulfurase	A0A1X6WFP1	Pacmanvirus	9.5e-29	28.4
WP_000033715.1\|86297_86750_+	hypothetical protein	NA	NA	NA	NA
WP_000043884.1\|86792_88142_-	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	1.3e-32	25.5
WP_000024621.1\|88316_88652_-	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	8.9e-20	39.4
WP_001269901.1\|88735_89902_-	chorismate synthase	A0A291AU41	Pandoravirus	9.3e-40	34.1
WP_001195733.1\|89902_90970_-	3-dehydroquinate synthase	NA	NA	NA	NA
WP_000707048.1\|91063_91741_-	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	5.3e-88	68.4
WP_001037600.1\|91740_92898_-	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	4.6e-140	66.0
WP_000721261.1\|93032_95177_+	LTA synthase family protein	W6LM83	Streptococcus_phage	6.3e-260	67.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_ALTH01000010

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr_ID: NZ_ALTH01000010.1|WP_000384271.1|1663_1990_-|replication-initiator-protein-A

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_ALTH01000010.1|WP_000384271.1|1663_1990_-|replication-initiator-protein-A

1663_1990_-

108 aa aa

AcrIIA21

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3639\|WP_000384271.1\|AcrIIA21\|II-A\|Verified\|Streptococcus	1.0	1	1.0

7. NZ_ALTH01000022

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

42226 : 54291

Gordonia_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000783424.1\|42226_43531_-	LysM peptidoglycan-binding domain-containing protein	A0A0E3XB61	Gordonia_phage	4.6e-11	36.0
WP_001045908.1\|43677_44577_-	peptidoglycan DD-metalloendopeptidase family protein	A0A221J6U0	Arthrobacter_phage	4.1e-19	45.9
WP_000166558.1\|44769_46317_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	4.4e-45	52.9
WP_000780020.1\|46336_47089_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000685111.1\|47108_47660_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.8e-25	35.6
WP_001291325.1\|47827_48850_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	9.6e-65	44.6
WP_000220672.1\|48877_50332_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.3e-54	32.5
WP_001042263.1\|50565_54291_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.6e-40	27.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

8. NZ_ALTH01000005

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

37293 : 45783

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000767484.1\|37293_38121_+	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	4.3e-124	78.0
WP_000287944.1\|38160_38517_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	1.5e-41	71.8
WP_000966772.1\|38518_38995_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	7.1e-39	50.9
WP_000232156.1\|39049_40231_-	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	7.0e-168	75.6
WP_001167085.1\|40293_40842_-	acetyltransferase	M1PSC3	Streptococcus_phage	1.1e-54	58.4
WP_000603277.1\|42134_42770_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_000425856.1\|43039_43909_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	4.9e-110	70.4
WP_000358198.1\|43908_44235_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	3.2e-30	61.1
WP_000364565.1\|44264_45128_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	7.3e-74	49.7
WP_000715592.1\|45147_45783_-	dTMP kinase	M1PSC7	Streptococcus_phage	2.8e-67	61.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

9. NZ_ALTH01000018

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

105932 : 114920

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000998734.1\|105932_106529_+	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	3.7e-16	29.4
WP_000575546.1\|106620_107877_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	7.8e-93	51.7
WP_000968655.1\|107881_108859_+	nucleoid-associated protein	NA	NA	NA	NA
WP_000472259.1\|108860_109463_+	lysozyme family protein	A0A223LKM8	Bacillus_phage	1.1e-20	40.1
WP_000826945.1\|109474_111193_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.8e-40	26.7
WP_000647647.1\|111193_112927_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.0e-50	31.2
WP_000746856.1\|112940_113138_+	hypothetical protein	NA	NA	NA	NA
WP_000222544.1\|113201_114920_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.4e-278	84.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage