CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_ALRG01000046	Streptococcus agalactiae BSU178 ctg7180000002407, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000025	Streptococcus agalactiae BSU178 ctg7180000002386, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000054	Streptococcus agalactiae BSU178 ctg7180000002415, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000021	Streptococcus agalactiae BSU178 ctg7180000002382, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000013	Streptococcus agalactiae BSU178 ctg7180000002374, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000006	Streptococcus agalactiae BSU178 ctg7180000002367, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000028	Streptococcus agalactiae BSU178 ctg7180000002389, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000050	Streptococcus agalactiae BSU178 ctg7180000002411, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000043	Streptococcus agalactiae BSU178 ctg7180000002404, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_ALRG01000062	Streptococcus agalactiae BSU178 ctg7180000002423, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_ALRG01000038	Streptococcus agalactiae BSU178 ctg7180000002399, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_ALRG01000049	Streptococcus agalactiae BSU178 ctg7180000002410, whole genome shotgun sequence	0 crisprs	cas3	0	0	0	0
NZ_ALRG01000014	Streptococcus agalactiae BSU178 ctg7180000002375, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000056	Streptococcus agalactiae BSU178 ctg7180000002417, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000024	Streptococcus agalactiae BSU178 ctg7180000002385, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_ALRG01000007	Streptococcus agalactiae BSU178 ctg7180000002368, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000001	Streptococcus agalactiae BSU178 ctg7180000002241, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000023	Streptococcus agalactiae BSU178 ctg7180000002384, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000019	Streptococcus agalactiae BSU178 ctg7180000002380, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000051	Streptococcus agalactiae BSU178 ctg7180000002412, whole genome shotgun sequence	1 crisprs	NA	0	0	0	0
NZ_ALRG01000018	Streptococcus agalactiae BSU178 ctg7180000002379, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000060	Streptococcus agalactiae BSU178 ctg7180000002421, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000040	Streptococcus agalactiae BSU178 ctg7180000002401, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000032	Streptococcus agalactiae BSU178 ctg7180000002393, whole genome shotgun sequence	0 crisprs	cas3	0	0	0	0
NZ_ALRG01000003	Streptococcus agalactiae BSU178 ctg7180000002364, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000061	Streptococcus agalactiae BSU178 ctg7180000002422, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000002	Streptococcus agalactiae BSU178 ctg7180000002363, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000020	Streptococcus agalactiae BSU178 ctg7180000002381, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000055	Streptococcus agalactiae BSU178 ctg7180000002416, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	1	0
NZ_ALRG01000027	Streptococcus agalactiae BSU178 ctg7180000002388, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	0	0
NZ_ALRG01000059	Streptococcus agalactiae BSU178 ctg7180000002420, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000045	Streptococcus agalactiae BSU178 ctg7180000002406, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_ALRG01000004	Streptococcus agalactiae BSU178 ctg7180000002365, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000015	Streptococcus agalactiae BSU178 ctg7180000002376, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000044	Streptococcus agalactiae BSU178 ctg7180000002405, whole genome shotgun sequence	0 crisprs	csa3	0	0	0	0
NZ_ALRG01000035	Streptococcus agalactiae BSU178 ctg7180000002396, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_ALRG01000058	Streptococcus agalactiae BSU178 ctg7180000002419, whole genome shotgun sequence	0 crisprs	WYL	0	0	0	0
NZ_ALRG01000022	Streptococcus agalactiae BSU178 ctg7180000002383, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_ALRG01000037	Streptococcus agalactiae BSU178 ctg7180000002398, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000047	Streptococcus agalactiae BSU178 ctg7180000002408, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_ALRG01000008	Streptococcus agalactiae BSU178 ctg7180000002369, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000041	Streptococcus agalactiae BSU178 ctg7180000002402, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_ALRG01000009	Streptococcus agalactiae BSU178 ctg7180000002370, whole genome shotgun sequence	0 crisprs	NA	0	0	1	1
NZ_ALRG01000016	Streptococcus agalactiae BSU178 ctg7180000002377, whole genome shotgun sequence	1 crisprs	csn2,cas2,cas1,cas9	3	13	0	0
NZ_ALRG01000010	Streptococcus agalactiae BSU178 ctg7180000002371, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000048	Streptococcus agalactiae BSU178 ctg7180000002409, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000039	Streptococcus agalactiae BSU178 ctg7180000002400, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_ALRG01000034	Streptococcus agalactiae BSU178 ctg7180000002395, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000031	Streptococcus agalactiae BSU178 ctg7180000002392, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000052	Streptococcus agalactiae BSU178 ctg7180000002413, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000036	Streptococcus agalactiae BSU178 ctg7180000002397, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000011	Streptococcus agalactiae BSU178 ctg7180000002372, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000026	Streptococcus agalactiae BSU178 ctg7180000002387, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000005	Streptococcus agalactiae BSU178 ctg7180000002366, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000029	Streptococcus agalactiae BSU178 ctg7180000002390, whole genome shotgun sequence	0 crisprs	DinG	0	0	0	0
NZ_ALRG01000033	Streptococcus agalactiae BSU178 ctg7180000002394, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000017	Streptococcus agalactiae BSU178 ctg7180000002378, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000012	Streptococcus agalactiae BSU178 ctg7180000002373, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000057	Streptococcus agalactiae BSU178 ctg7180000002418, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000053	Streptococcus agalactiae BSU178 ctg7180000002414, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALRG01000030	Streptococcus agalactiae BSU178 ctg7180000002391, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_ALRG01000042	Streptococcus agalactiae BSU178 ctg7180000002403, whole genome shotgun sequence	0 crisprs	NA	0	0	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 7919

Streptococcus_phage(70.0%)

integrase

attL 1013:1026|attR 15500:15513

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001882014.1\|0_680_-	DnaD domain protein	A0A097PBE7	Streptococcus_pyogenes_phage	1.0e-62	65.8
WP_001123482.1\|859_1171_-	hypothetical protein	M1Q0Y6	Streptococcus_phage	2.9e-49	87.3
1013:1026	attL	NA	NA	NA	NA
WP_001112862.1\|1250_1442_-	hypothetical protein	A0A141DZR9	Streptococcus_phage	4.7e-18	69.8
WP_000739596.1\|2103_2349_-	hypothetical protein	X2L066	Streptococcus_phage	7.4e-08	55.8
WP_000484457.1\|2644_2992_+	helix-turn-helix transcriptional regulator	A0A126GGQ7	Streptococcus_phage	1.3e-42	76.1
WP_000151182.1\|2995_3382_+	ImmA/IrrE family metallo-endopeptidase	A0A1S5SFH2	Streptococcus_phage	2.3e-35	57.6
WP_000353930.1\|3399_3951_+	hypothetical protein	A7J267	Streptococcus_phage	1.7e-60	64.3
WP_000269473.1\|4065_5208_+\|integrase	site-specific integrase	A1EAB7	Streptococcus_phage	4.8e-182	81.8
WP_001284634.1\|5295_5571_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	1.2e-25	71.9
WP_000806954.1\|5673_6276_-	YpmS family protein	NA	NA	NA	NA
WP_001035227.1\|6250_7090_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_000034838.1\|7082_7919_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	3.7e-14	38.0
15500:15513	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_ALRG01000041

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 10139

Streptococcus_phage(72.73%)

tRNA,integrase

attL 2936:2949|attR 13218:13231

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000057627.1\|0_623_-	DnaD domain protein	L0P704	Lactobacillus_phage	3.1e-34	58.8
WP_000342242.1\|800_1079_-	hypothetical protein	B3GVX8	Streptococcus_phage	1.6e-22	55.3
WP_025194682.1\|1158_1335_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000239012.1\|1451_1664_+	hypothetical protein	M1PRU3	Streptococcus_phage	1.3e-16	60.0
WP_000032136.1\|1820_2342_-	hypothetical protein	J7KJY1	Streptococcus_phage	3.3e-69	83.8
WP_001156318.1\|2334_3291_-	hypothetical protein	J7KDG2	Streptococcus_phage	2.3e-73	54.5
2936:2949	attL	NA	NA	NA	NA
WP_000789102.1\|3319_3526_-	helix-turn-helix transcriptional regulator	J7KBP9	Streptococcus_phage	1.1e-20	77.8
WP_001875290.1\|3720_4056_+	transcriptional regulator	J7KJZ4	Streptococcus_phage	1.4e-28	55.9
WP_000134940.1\|4072_4420_+	hypothetical protein	A3F612	Streptococcus_phage	3.6e-32	57.0
WP_000802048.1\|4547_5516_+	Abi family protein	A0A0S2MYH0	Enterococcus_phage	1.8e-41	34.5
WP_000179394.1\|5634_6705_+\|integrase	site-specific integrase	A7J266	Streptococcus_phage	3.9e-133	65.7
WP_001266024.1\|6894_7530_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_000155919.1\|7519_8320_-	phosphotransferase family protein	NA	NA	NA	NA
WP_000732713.1\|8377_9412_-	ABC transporter permease	NA	NA	NA	NA
WP_000912307.1\|9413_10139_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.5e-21	30.2
13218:13231	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_ALRG01000039

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

96 : 28903

Streptococcus_phage(90.91%)

terminase,capsid,holin,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000323864.1\|96_579_+	siphovirus Gp157 family protein	A0A1P8VVS5	Streptococcus_phage	5.3e-50	68.1
WP_000063049.1\|579_1254_+	essential recombination function protein	A0A097PBE8	Streptococcus_pyogenes_phage	1.4e-112	92.9
WP_000609372.1\|1246_1663_+	single-stranded DNA-binding protein	Q938M7	Temperate_phage	9.3e-59	83.5
WP_000165749.1\|1665_1869_+	hypothetical protein	J7KIX6	Streptococcus_phage	2.5e-25	93.7
WP_000143296.1\|1858_2335_+	RusA family crossover junction endodeoxyribonuclease	J7KBT1	Streptococcus_phage	3.6e-59	97.4
WP_000129028.1\|2324_2672_+	hypothetical protein	J7KK12	Streptococcus_phage	7.7e-59	95.7
WP_000763912.1\|2683_2980_+	DUF1599 domain-containing protein	J7KBY0	Streptococcus_phage	4.0e-48	99.0
WP_000612375.1\|3118_3499_+	hypothetical protein	J7KIZ4	Streptococcus_phage	7.7e-36	61.8
WP_000159372.1\|3629_3806_+	hypothetical protein	NA	NA	NA	NA
WP_000806515.1\|3789_4008_+	hypothetical protein	NA	NA	NA	NA
WP_001114403.1\|4011_4194_+	hypothetical protein	A0A0B5A568	Streptococcus_phage	6.7e-22	86.4
WP_000164968.1\|4565_4949_+	hypothetical protein	A0A1P8VVS9	Streptococcus_phage	3.1e-24	46.5
WP_001136852.1\|5212_5656_+	hypothetical protein	A0A141DZJ9	Streptococcus_phage	1.5e-51	74.8
WP_000691756.1\|5642_6956_+\|terminase	PBSX family phage terminase large subunit	K4JW72	Streptococcus_phage	2.8e-218	83.1
WP_032458561.1\|7018_8551_+\|portal	phage portal protein	M1IFC5	Streptococcus_phage	3.1e-224	76.9
WP_000140093.1\|8649_9819_+\|capsid	phage capsid protein	A0A1P8VVK3	Streptococcus_phage	4.5e-151	69.6
WP_000011249.1\|9953_10532_+	scaffold protein	A0A1C9LX53	Streptococcus_phage	4.0e-44	53.9
WP_000224751.1\|10553_11438_+	hypothetical protein	A0A1S5S8N6	Streptococcus_phage	4.9e-110	70.9
WP_001269648.1\|11448_11706_+	hypothetical protein	A0A1P8VVQ1	Streptococcus_phage	1.2e-08	56.9
WP_000221832.1\|11747_12137_+	hypothetical protein	K4JXK7	Streptococcus_phage	3.1e-40	67.9
WP_000565940.1\|12126_12453_+	hypothetical protein	M1IEU8	Streptococcus_phage	8.9e-33	58.9
WP_000064768.1\|12452_12818_+	hypothetical protein	A0A1P8VVL8	Streptococcus_phage	2.0e-33	57.5
WP_001180644.1\|12818_13226_+\|capsid	phage capsid protein	A0A1P8VVK7	Streptococcus_phage	1.1e-51	75.8
WP_000113202.1\|13228_13684_+	hypothetical protein	A0A1P8VVM4	Streptococcus_phage	2.3e-58	73.7
WP_000069049.1\|13715_14114_+	hypothetical protein	NA	NA	NA	NA
WP_000459713.1\|14116_14701_+	hypothetical protein	A0A1P8VVK8	Streptococcus_phage	6.2e-69	64.9
WP_000763172.1\|14719_18496_+	tape measure protein	A0A1P8VVL4	Streptococcus_phage	2.4e-190	64.7
WP_001293184.1\|18488_19937_+	hypothetical protein	A0A1S5SE21	Streptococcus_phage	4.4e-63	32.1
WP_001882115.1\|19936_22738_+	hypothetical protein	J7KJ56	Streptococcus_phage	2.4e-17	29.1
WP_000536256.1\|22748_24755_+	hypothetical protein	J7KK23	Streptococcus_phage	3.2e-141	43.6
WP_000491467.1\|24767_25097_+	DUF1366 domain-containing protein	J7KDI9	Streptococcus_phage	9.0e-25	59.0
WP_000698337.1\|25071_25284_+	hypothetical protein	J7KDP6	Streptococcus_phage	2.1e-14	60.0
WP_000215499.1\|25296_25599_+	hypothetical protein	X2KT07	Streptococcus_phage	2.2e-25	59.6
WP_001001965.1\|25600_25936_+\|holin	phage holin	A0A1P8VVK6	Streptococcus_phage	1.0e-36	72.1
WP_000236381.1\|25937_26657_+	CHAP domain-containing protein	A0A1U9WRD0	Streptococcus_virus	1.6e-58	72.1
WP_000837685.1\|27014_27530_+	hypothetical protein	NA	NA	NA	NA
WP_000059049.1\|27796_28456_+	hypothetical protein	NA	NA	NA	NA
WP_000787652.1\|28459_28903_+	hypothetical protein	A3F671	Streptococcus_phage	7.4e-14	34.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_ALRG01000035

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

514 : 7718

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001042661.1\|514_1219_-	transglycosylase SLT domain-containing protein	A0A2H4J6C5	uncultured_Caudovirales_phage	3.2e-27	56.6
WP_000029067.1\|1324_1864_-	LysM peptidoglycan-binding domain-containing protein	A0A249XZV3	Enterococcus_phage	3.0e-17	46.4
WP_000359358.1\|2079_2874_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_000510606.1\|2866_3709_-	energy-coupling factor transporter ATPase	W6JKT0	Anomala_cuprea_entomopoxvirus	2.5e-18	25.5
WP_000181757.1\|3684_4524_-	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	3.5e-20	30.0
WP_000239224.1\|4523_5066_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_000217765.1\|5188_6472_-	insulinase family protein	A0A2K9V7S4	Bandra_megavirus	1.6e-21	33.3
WP_000706190.1\|6473_7718_-	insulinase family protein	A0A1X9I714	Streptococcus_phage	1.7e-87	41.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_ALRG01000062

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3513 : 11595

Staphylococcus_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001288869.1\|3513_3726_+	hypothetical protein	A0A223LEC3	Bacillus_phage	3.3e-12	50.0
WP_001873534.1\|3849_4470_+	hypothetical protein	NA	NA	NA	NA
WP_001073014.1\|4524_5865_-	divalent metal cation transporter	NA	NA	NA	NA
WP_000975998.1\|6593_7703_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.0e-56	37.4
WP_000493859.1\|7683_8334_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	4.5e-36	41.5
WP_000885818.1\|8351_9545_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.0e-110	50.8
WP_000152414.1\|9559_10030_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.3e-40	52.7
WP_000070709.1\|10104_11595_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	7.6e-87	38.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_ALRG01000009

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1207 : 25640

Streptococcus_phage(76.19%)

transposase,integrase

attL 17796:17810|attR 33434:33448

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000421280.1\|1207_1522_+	YdcP family protein	A0A1S5SF38	Streptococcus_phage	7.0e-43	76.7
WP_001234189.1\|1542_1920_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	5.6e-47	77.2
WP_000185760.1\|1929_2703_+	hypothetical protein	A0A0C4UQZ7	Shigella_phage	1.4e-07	25.5
WP_001130247.1\|2724_4128_+	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	2.3e-178	67.2
WP_000426691.1\|4309_5494_+	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	1.0e-158	67.6
WP_000055367.1\|5490_5763_+	hypothetical protein	NA	NA	NA	NA
WP_001009054.1\|5759_5981_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	3.1e-29	93.2
WP_000678782.1\|6022_6802_+	abortive infection family protein	NA	NA	NA	NA
WP_000421245.1\|6863_7364_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	5.4e-53	61.1
WP_000195404.1\|7526_8693_+\|transposase	IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	1.2e-106	76.0
WP_029776839.1\|8784_9492_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	5.9e-21	33.9
WP_001232998.1\|9650_9935_-\|transposase	transposase	NA	NA	NA	NA
WP_000234705.1\|10001_11027_+	hypothetical protein	NA	NA	NA	NA
WP_000723886.1\|11097_11493_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	1.7e-49	75.0
WP_000941001.1\|11476_13930_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	79.1
WP_000192390.1\|13926_15954_+	hypothetical protein	A0A1S5SF30	Streptococcus_phage	1.8e-195	65.7
WP_000768374.1\|15950_16973_+	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	1.4e-132	75.5
WP_012972536.1\|16980_17919_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	1.1e-83	56.6
17796:17810	attL	NA	NA	NA	NA
WP_011058339.1\|18194_18281_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_000691737.1\|18296_20216_+	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	97.2
WP_001803271.1\|20334_20502_+	conjugal transfer protein	D0R0F6	Streptococcus_phage	2.3e-13	62.0
WP_001227349.1\|20559_20913_-	helix-turn-helix transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	1.3e-53	90.5
WP_002320864.1\|21384_21867_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	1.2e-49	70.0
WP_000845144.1\|21863_22094_+	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	7.9e-28	78.9
WP_000633909.1\|22589_22790_+	DUF3173 domain-containing protein	NA	NA	NA	NA
WP_000237798.1\|22816_24010_+\|integrase	site-specific integrase	H0UST3	Bacillus_phage	1.2e-45	35.8
WP_000129872.1\|24077_25640_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	4.9e-20	31.7
33434:33448	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_ALRG01000009.1|WP_000234705.1|10001_11027_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_ALRG01000009.1|WP_000234705.1|10001_11027_+|hypothetical-protein

10001_11027_+

341 aa aa

HTH_21

Identity	Hit_domain_coverage
0.5	0.711864406779661

1207-25640

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_ALRG01000016_1	TypeII	1.18\|43637\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43637-43666	30	11611-11640	0

1. spacer 1.18|43637|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NZ_ALRG01000009 position: 11611-11640, mismatch: 0

tttccgtcaattgattgcccaaaatcgtga	CRISPR spacer
tttccgtcaattgattgcccaaaatcgtga	Protospacer
******************************

7. NZ_ALRG01000022

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6614 : 14270

Streptococcus_phage(66.67%)

integrase

attL 4645:4658|attR 20567:20580

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4645:4658	attL	NA	NA	NA	NA
WP_001258609.1\|6614_7217_-	phage repressor protein	A0A1W6JPC3	Staphylococcus_phage	6.7e-42	46.7
WP_000359663.1\|7240_7441_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001080841.1\|7646_8261_+	helix-turn-helix transcriptional regulator	A0A1X9I723	Streptococcus_phage	2.6e-17	68.7
WP_000946250.1\|8272_8560_+	DUF3102 domain-containing protein	A0A286QMZ8	Streptococcus_phage	1.9e-10	61.4
WP_000429449.1\|9097_10063_+	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	7.1e-86	51.1
WP_000605382.1\|10395_11568_+\|integrase	site-specific integrase	A0A1X9I5Y5	Streptococcus_phage	4.3e-154	70.4
WP_000092759.1\|11674_12286_-	30S ribosomal protein S4	NA	NA	NA	NA
WP_001278152.1\|12615_12903_-	hypothetical protein	NA	NA	NA	NA
WP_000852645.1\|12914_14270_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.2e-152	62.6
20567:20580	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

8. NZ_ALRG01000055

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

103574 : 113847

Streptococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000721261.1\|103574_105719_-	LTA synthase family protein	W6LM83	Streptococcus_phage	6.3e-260	67.5
WP_001037600.1\|105853_107011_+	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	4.6e-140	66.0
WP_000707048.1\|107010_107688_+	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	5.3e-88	68.4
WP_001195735.1\|107781_108849_+	3-dehydroquinate synthase	NA	NA	NA	NA
WP_001269902.1\|108849_110016_+	chorismate synthase	A0A291AU41	Pandoravirus	7.1e-40	34.4
WP_000024627.1\|110099_110435_+	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	1.2e-19	39.4
WP_000043879.1\|110609_111959_+	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	2.2e-32	25.5
WP_000033716.1\|112002_112455_-	hypothetical protein	NA	NA	NA	NA
WP_000638897.1\|112701_113847_+	cysteine desulfurase	A0A1X6WFP1	Pacmanvirus	7.3e-29	28.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

9. NZ_ALRG01000047

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6988 : 15976

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000998734.1\|6988_7585_+	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	3.7e-16	29.4
WP_000575546.1\|7676_8933_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	7.8e-93	51.7
WP_000968655.1\|8937_9915_+	nucleoid-associated protein	NA	NA	NA	NA
WP_000472259.1\|9916_10519_+	lysozyme family protein	A0A223LKM8	Bacillus_phage	1.1e-20	40.1
WP_000826945.1\|10530_12249_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.8e-40	26.7
WP_000647647.1\|12249_13983_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.0e-50	31.2
WP_000746856.1\|13996_14194_+	hypothetical protein	NA	NA	NA	NA
WP_000222544.1\|14257_15976_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.4e-278	84.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

10. NZ_ALRG01000030

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8468 : 20533

Microbacterium_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001042263.1\|8468_12194_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.6e-40	27.0
WP_000220672.1\|12427_13882_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.3e-54	32.5
WP_001291325.1\|13909_14932_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	9.6e-65	44.6
WP_000685111.1\|15099_15651_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.8e-25	35.6
WP_000780020.1\|15670_16423_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000166558.1\|16442_17990_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	4.4e-45	52.9
WP_001045908.1\|18182_19082_+	peptidoglycan DD-metalloendopeptidase family protein	A0A221J6U0	Arthrobacter_phage	4.1e-19	45.9
WP_000783424.1\|19228_20533_+	LysM peptidoglycan-binding domain-containing protein	A0A0E3XB61	Gordonia_phage	4.6e-11	36.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

11. NZ_ALRG01000043

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1623 : 10113

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000715592.1\|1623_2259_+	dTMP kinase	M1PSC7	Streptococcus_phage	2.8e-67	61.1
WP_000364565.1\|2278_3142_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	7.3e-74	49.7
WP_000358198.1\|3171_3498_+	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	3.2e-30	61.1
WP_001866320.1\|3503_4367_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.7e-110	70.4
WP_011058366.1\|4342_4504_-	hypothetical protein	NA	NA	NA	NA
WP_011058365.1\|4488_4593_+	hypothetical protein	NA	NA	NA	NA
WP_000603277.1\|4636_5272_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001167085.1\|6564_7113_+	acetyltransferase	M1PSC3	Streptococcus_phage	1.1e-54	58.4
WP_000232155.1\|7175_8357_+	D-3-phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	2.6e-167	75.6
WP_000966772.1\|8411_8888_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	7.1e-39	50.9
WP_000287944.1\|8889_9246_+	arsenate reductase family protein	M1PLC0	Streptococcus_phage	1.5e-41	71.8
WP_000767484.1\|9285_10113_-	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	4.3e-124	78.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

12. NZ_ALRG01000038

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

95 : 27749

Streptococcus_phage(83.87%)

tail,terminase,capsid,portal,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001092695.1\|95_425_+	hypothetical protein	J7KGX3	Streptococcus_phage	4.9e-47	87.2
WP_001262696.1\|427_1390_+	recombinase RecT	J7KDK3	Streptococcus_phage	9.6e-176	98.1
WP_000137367.1\|1386_2184_+	hypothetical protein	J7KGZ1	Streptococcus_phage	1.4e-135	87.5
WP_000191925.1\|2637_2895_+	DUF3850 domain-containing protein	A0A0A8WI22	Clostridium_phage	5.1e-15	49.4
WP_000139630.1\|2977_3247_+	hypothetical protein	A7J287	Streptococcus_phage	4.5e-22	68.5
WP_001019143.1\|3390_3912_+	DUF1642 domain-containing protein	Q938L9	Temperate_phage	2.1e-20	40.2
WP_025194680.1\|3931_4231_+	hypothetical protein	M1PFH6	Streptococcus_phage	2.8e-17	45.8
WP_000221699.1\|4418_4613_+	hypothetical protein	NA	NA	NA	NA
WP_000660740.1\|4609_4876_+	hypothetical protein	NA	NA	NA	NA
WP_011058322.1\|5263_5692_+	DUF1492 domain-containing protein	A0A0B5A564	Streptococcus_phage	6.4e-31	49.3
WP_001882101.1\|6262_6640_+	HNH endonuclease	Q7Y4J1	Streptococcus_phage	7.1e-42	72.2
WP_000725957.1\|6791_7148_+	hypothetical protein	A0A0B5A7G9	Streptococcus_phage	5.9e-22	49.6
WP_001108669.1\|7144_8413_+\|portal	phage portal protein	A0A1X9I693	Streptococcus_phage	8.2e-191	76.2
WP_000227333.1\|8405_9626_+	hypothetical protein	Q7Y4I9	Streptococcus_phage	6.6e-113	66.0
WP_000421991.1\|9625_9814_+	hypothetical protein	NA	NA	NA	NA
WP_000256853.1\|9921_11337_+\|terminase	terminase	A0A0B5A091	Streptococcus_phage	6.3e-216	74.8
WP_001288695.1\|11417_11882_+	DUF4355 domain-containing protein	A0A0B5A7G6	Streptococcus_phage	1.7e-40	51.3
WP_000841023.1\|11884_12787_+\|capsid	phage major capsid protein	A0A0B5A5W3	Streptococcus_phage	9.7e-146	86.0
WP_000640307.1\|12783_12999_+	hypothetical protein	M1PRX2	Streptococcus_phage	6.5e-08	52.9
WP_000180800.1\|13012_13444_+	hypothetical protein	A0A0B5A2F6	Streptococcus_phage	3.8e-47	70.1
WP_000517229.1\|13394_13733_+	hypothetical protein	A0A0B5A086	Streptococcus_phage	1.4e-41	67.9
WP_000032787.1\|13725_13962_+	hypothetical protein	A0A1P8BMT2	Lactococcus_phage	2.5e-21	66.7
WP_000573598.1\|13962_14298_+	hypothetical protein	A0A1P8BMR5	Lactococcus_phage	9.8e-35	64.9
WP_000226354.1\|14307_14865_+\|tail	tail protein	M1PKG8	Streptococcus_phage	3.4e-64	65.8
WP_000858406.1\|14864_15110_+	hypothetical protein	A0A0B5A2F3	Streptococcus_phage	9.7e-16	55.3
WP_000916438.1\|15124_15496_+	DUF5361 domain-containing protein	A0A1P8BMT6	Lactococcus_phage	7.3e-31	54.0
WP_000224694.1\|15495_17508_+	hypothetical protein	Q9F4J3	Streptococcus_phage	9.8e-13	58.9
WP_000228809.1\|17501_19034_+	hypothetical protein	J7KH53	Streptococcus_phage	4.7e-201	73.6
WP_000955550.1\|19034_23150_+	CHAP domain-containing protein	J7KBT9	Streptococcus_phage	0.0e+00	82.8
WP_000214863.1\|23162_25166_+	hypothetical protein	J7KC14	Streptococcus_phage	0.0e+00	88.8
WP_000889198.1\|25177_25570_+	DUF1366 domain-containing protein	J7KKA3	Streptococcus_phage	2.3e-11	38.7
WP_001017825.1\|25729_26023_+	hypothetical protein	J7KH30	Streptococcus_phage	2.7e-28	65.3
WP_000611525.1\|26024_26276_+\|holin	phage holin	J7KDR1	Streptococcus_phage	2.5e-35	95.2
WP_000257223.1\|26405_27749_+	hypothetical protein	Q8HA43	Streptococcus_phage	2.3e-252	94.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

13. NZ_ALRG01000051

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_ALRG01000051_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_ALRG01000051_1

2862-2977

Orphan

Consensus_repeat	Method
GGTCCTAAAGGAGACCGAGGTGAAACCGGCCCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_ALRG01000051_1

>merge|NZ_ALRG01000051|1|2862-2977|CRISPRCasFinder
GGTCCTAAAGGAGACCGAGGTGAAACCGGCCCAGCAGGTAAAGATGGTGAAGCTGGAGCACAGGGACCAGTGGGACCAGCCGGTCCTAAGGGAGACCGAGGTGAAACCGGCCCAGC

>NZ_ALRG01000051|1|1|2862-2977|CRISPRCasFinder
GGTCCTAAAGGAGACCGAGGTGAAACCGGCCCAGC	AGGTAAAGATGGTGAAGCTGGAGCACAGGGACCAGTGGGACCAGCC
GGTCCTAAGGGAGACCGAGGTGAAACCGGCCCAGC

>NZ_ALRG01000051.1|WP_032458571.1|531_1065_-|TetR/AcrR-family-transcriptional-regulator
MLVSSDNTNLKFLKAFSELLKMRSFEQIKVSDLAKKARLSRRSFYNHYNSKEDFLRESILIIFDDITKILNNDLLYEEVVLKEMLNYMYINKEIIKSFVCFFPNIDNIIKDYIKGMIIHSDIPDLEKQLETAYQIPYSFALDIYISTIESIILNWIDHDFTEEPEEIARYITSVVRI
>NZ_ALRG01000051.1|WP_000320831.1|0_403_+|ClbS/DfsB-family-four-helix-bundle-protein
VDRTPAENLSYQVGWTNLVLKWEEDERKGLQVKTPSDKFKWNQLGELYQWFTDTYAHLSLQELKAKLNENINSIYAMIDLLSEEELFEAHMRKWADEATKTATWEVYKFIHVNTVAPFGTFRTKIRKWKKIVL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

14. NZ_ALRG01000016

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_ALRG01000016_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_ALRG01000016_1

42479-43702

TypeII

II-A

Consensus_repeat	Method
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	PILER-CR

18 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_ALRG01000016_1

>merge|NZ_ALRG01000016|1|42479-43702|CRT,CRISPRCasFinder,PILER-CR
TGATGTCCTAGCATAATAACAGCACAGCTCTAAAACACATATCCTTTTGTTAGGTCAAAAGAAGATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGATGGAGTGTTAGAAGAATTAAAAAGAAGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCACTTGTGAAATATCTTCAGAAGATAGAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGAGTTACTGTTGAGGGTAGTCCTTGAATGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCAATCCAATCAGCCACAAACTGTGGCACTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTAGTATCTCAAATAAAATTCAACTTCACTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACGTCTAAAATATTATCAAACATAGGGTTGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATTTTTAGCATAGATTGCTGATTTGGACCCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATTAAGTCATCAAGGCTGTTTGTTTCTTGTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCACAGGTTTACTTGGTGGCGTGGAATTCAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATCTTGCTTTATTGACTGATAGAGCAATTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCCTCTATCGGTTTTAACGGCAATCAATTGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACAAGCTATACTATGCTAAAAAATCAAATTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCAACAAGTTCCAGAGAATGAAACAGGTCAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATTGGAACATTATGAAGCCGATGATATCATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTAGGTAGACTTTTTTTGTTTCATCTGTCAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGGCGAGGTTGTCTACACCACGGCGGATAGTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTTCCGTCAATTGATTGCCCAAAATCGTGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_ALRG01000016|1|1|42479-43702|CRT
TGATGTCCTAGCATAATAACAGCACAGCTCTAAAAC	ACATATCCTTTTGTTAGGTCAAAAGAAGAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATGGAGTGTTAGAAGAATTAAAAAGAAGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCACTTGTGAAATATCTTCAGAAGATAGAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGAGTTACTGTTGAGGGTAGTCCTTGAATG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CAATCCAATCAGCCACAAACTGTGGCACTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAGTATCTCAAATAAAATTCAACTTCACTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACGTCTAAAATATTATCAAACATAGGGTTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTTTTAGCATAGATTGCTGATTTGGACCC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTAAGTCATCAAGGCTGTTTGTTTCTTGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCACAGGTTTACTTGGTGGCGTGGAATTCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATCTTGCTTTATTGACTGATAGAGCAATTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCCTCTATCGGTTTTAACGGCAATCAATTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACAAGCTATACTATGCTAAAAAATCAAATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CAACAAGTTCCAGAGAATGAAACAGGTCAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTGGAACATTATGAAGCCGATGATATCAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTAGGTAGACTTTTTTTGTTTCATCTGTCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GGCGAGGTTGTCTACACCACGGCGGATAGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTTCCGTCAATTGATTGCCCAAAATCGTGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_ALRG01000016|1|1|42545-43702|CRISPRCasFinder
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATGGAGTGTTAGAAGAATTAAAAAGAAGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCACTTGTGAAATATCTTCAGAAGATAGAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGAGTTACTGTTGAGGGTAGTCCTTGAATG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CAATCCAATCAGCCACAAACTGTGGCACTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAGTATCTCAAATAAAATTCAACTTCACTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACGTCTAAAATATTATCAAACATAGGGTTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTTTTAGCATAGATTGCTGATTTGGACCC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTAAGTCATCAAGGCTGTTTGTTTCTTGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCACAGGTTTACTTGGTGGCGTGGAATTCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATCTTGCTTTATTGACTGATAGAGCAATTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCCTCTATCGGTTTTAACGGCAATCAATTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACAAGCTATACTATGCTAAAAAATCAAATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CAACAAGTTCCAGAGAATGAAACAGGTCAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTGGAACATTATGAAGCCGATGATATCAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTAGGTAGACTTTTTTTGTTTCATCTGTCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GGCGAGGTTGTCTACACCACGGCGGATAGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTTCCGTCAATTGATTGCCCAAAATCGTGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_ALRG01000016|1|1|42677-43702|PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGAGTTACTGTTGAGGGTAGTCCTTGAATG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CAATCCAATCAGCCACAAACTGTGGCACTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAGTATCTCAAATAAAATTCAACTTCACTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACGTCTAAAATATTATCAAACATAGGGTTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTTTTAGCATAGATTGCTGATTTGGACCC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTAAGTCATCAAGGCTGTTTGTTTCTTGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCACAGGTTTACTTGGTGGCGTGGAATTCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATCTTGCTTTATTGACTGATAGAGCAATTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCCTCTATCGGTTTTAACGGCAATCAATTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACAAGCTATACTATGCTAAAAAATCAAATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CAACAAGTTCCAGAGAATGAAACAGGTCAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTGGAACATTATGAAGCCGATGATATCAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTAGGTAGACTTTTTTTGTTTCATCTGTCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GGCGAGGTTGTCTACACCACGGCGGATAGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTTCCGTCAATTGATTGCCCAAAATCGTGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_ALRG01000016.1\|WP_001040087.1\|45663_49776_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NZ_ALRG01000016.1\|WP_000523795.1\|51580_52318_-\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
NZ_ALRG01000016.1\|WP_000159234.1\|53948_54320_-\|YbgA-family-protein	unknown	unknown	gnl\|CDD\|377982
NZ_ALRG01000016.1\|WP_029663839.1\|36657_39276_-\|pneumococcal-type-histidine-triad-protein	unknown	unknown	gnl\|CDD\|275380
NZ_ALRG01000016.1\|WP_000065321.1\|30944_32048_-\|DUF2974-domain-containing-protein	unknown	unknown	gnl\|CDD\|371412
NZ_ALRG01000016.1\|WP_001019133.1\|39536_41369_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_ALRG01000016.1\|WP_000146566.1\|30185_30824_+\|CatB-related-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
NZ_ALRG01000016.1\|WP_000122194.1\|44454_44796_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_ALRG01000016.1\|WP_001241816.1\|53543_53924_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131381
NZ_ALRG01000016.1\|WP_000590706.1\|43802_44468_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	pfam09711_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_ALRG01000016.1\|WP_011058334.1\|42053_42224_-\|hypothetical-protein	unknown	unknown	unknown
NZ_ALRG01000016.1\|WP_000323544.1\|50809_51580_-\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_ALRG01000016.1\|WP_000665410.1\|34991_35426_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NZ_ALRG01000016.1\|WP_000180007.1\|35898_36558_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224336
NZ_ALRG01000016.1\|WP_000914664.1\|52321_53452_-\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NZ_ALRG01000016.1\|WP_000929489.1\|44792_45662_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_ALRG01000016.1\|WP_000168898.1\|32047_34840_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|223550
NZ_ALRG01000016.1\|WP_000438314.1\|41504_41921_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_ALRG01000016.1\|WP_000621142.1\|35425_35890_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_ALRG01000016.1\|WP_000653357.1\|50163_50820_-\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884

Protein	Function_ID	Function_description	E-value
NZ_ALRG01000016.1\|WP_001040087.1\|45663_49776_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	0
NZ_ALRG01000016.1\|WP_000523795.1\|51580_52318_-\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	3.68196e-111
NZ_ALRG01000016.1\|WP_000159234.1\|53948_54320_-\|YbgA-family-protein	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	6.08694e-28
NZ_ALRG01000016.1\|WP_029663839.1\|36657_39276_-\|pneumococcal-type-histidine-triad-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	5.6742e-22
NZ_ALRG01000016.1\|WP_001019133.1\|39536_41369_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_ALRG01000016.1\|WP_000146566.1\|30185_30824_+\|CatB-related-O-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	9.50556e-71
NZ_ALRG01000016.1\|WP_000122194.1\|44454_44796_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.38084e-52
NZ_ALRG01000016.1\|WP_001241816.1\|53543_53924_-\|hypothetical-protein	gnl\|CDD\|131381	TIGR02328, TIGR02328, conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown. [Hypothetical proteins, Conserved].	6.45558e-80
NZ_ALRG01000016.1\|WP_000590706.1\|43802_44468_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.61399e-122
NZ_ALRG01000016.1\|WP_000065321.1\|30944_32048_-\|DUF2974-domain-containing-protein	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	1.82724e-105
NZ_ALRG01000016.1\|WP_000323544.1\|50809_51580_-\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.19143e-132
NZ_ALRG01000016.1\|WP_000665410.1\|34991_35426_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	6.40832e-86
NZ_ALRG01000016.1\|WP_000180007.1\|35898_36558_-\|HD-domain-containing-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	2.66997e-33
NZ_ALRG01000016.1\|WP_000914664.1\|52321_53452_-\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NZ_ALRG01000016.1\|WP_000929489.1\|44792_45662_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.54315e-139
NZ_ALRG01000016.1\|WP_000168898.1\|32047_34840_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NZ_ALRG01000016.1\|WP_000438314.1\|41504_41921_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	4.64422e-78
NZ_ALRG01000016.1\|WP_000621142.1\|35425_35890_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.91796e-19
NZ_ALRG01000016.1\|WP_000653357.1\|50163_50820_-\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	9.75792e-52

>NZ_ALRG01000016.1|WP_011058334.1|42053_42224_-|hypothetical-protein
MKGYNSNLMVKGLGCSTLYLIISLTALVLLVIAGVFFVINTCKLTRKAVENLSIIN
>NZ_ALRG01000016.1|WP_000438314.1|41504_41921_-|nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
>NZ_ALRG01000016.1|WP_001019133.1|39536_41369_-|elongation-factor-4
MNIEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRAEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGEVDAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTITLANNPAIEPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTRVDSIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKLIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDDKK
>NZ_ALRG01000016.1|WP_029663839.1|36657_39276_-|pneumococcal-type-histidine-triad-protein
MIALAGLVLSCHFALTACHTQEHKNSHHIKTKQVAKKKANKKKVSVKESHKKRKGVAGVDFPTDDGFLLTKDSKILSHTDSGIVVAHGNHSHFIFYSDLKGSKFSYLIPNANTKTNKNQAVRNFKAGAVAVNTLNDGYVFNPADIVSEDANGYVVRHGDHFHYIPKASLSQQKQVQASRAVSRLGNQSNSHYRVNSSKIAGLHYPTSNGFLFNGRGIKGTTPTGILVEHHNHLHFISFADLRKGGWGSIADRYQPQKKADSKKQSPSSKKPRTENTLPKDIKDKLAYLARELHLDISRIRVLKTLNGEIGFEYPHDDHTHVIMAKDIDLSKPIPNPHHDDEDHHKGHHHDESDHKHEEHEHTKSNKLSDEDQKKLIYLAEKLGLNPNQIEVLTSEDGSIIFKYPHDDHSHTIASKDIEIGKPIPDGHHDHSHAKDKVGMATLKQIGFDDEIIQDILHADAPTPFPSNETNPEKMRQWLATVTKINIGQRTNPFQRFGLSLMPNIEVLGIGFTPINDMTPVLQFKKLKQLWMTNTGITDYSFLDKMPLLEGLDISQNGIKDLSFLTKYKQLSLIAAANNGITSLKPLAELPNLQFLVLSHNNISDLTPLSNLTKLQELHLDHNNVKNLSALSGKKDLKVLDLSNNKSADLSTLKTTSLETLLLNETNTSNLSFLKQNPKVSNLTINNAKLASLDGIEESDEIVKVEAEGNQIKSLVLKNKQGLLKFLNVTNNQLTSLEGVNNYTSLETLSVSKNKLESLDIKTPNKTVTNLDFSHNNVPTSQLKLNEKNIPEAVAKNFPAVVEGSMVGNGSLAEKAAMASKEDKQVSDNTNHQKNTEKSAQANADSKKENPKTHDEHHDHEETDHAHVGHHHH
>NZ_ALRG01000016.1|WP_000180007.1|35898_36558_-|HD-domain-containing-protein
MTMVKREDVILNATENMVHHKLKNDPSGHDWFHIVRVRNLAVELAHKEGANTFICQMAALLHDIIDDKICQDSKQASYELTQWLYSQDLAIAEVEHILDILENISFKAGTGLTMKTLEGQIVQDADRLDAMGAIGIARTMAYSGSKGRLIHDPNLKPRENLTLEEYRNGQDTAIMHFYEKLLKLKDLMNTKQGKMLAQKRHDFLELYLAEFYAEWNGKR
>NZ_ALRG01000016.1|WP_000621142.1|35425_35890_-|GNAT-family-N-acetyltransferase
MIRRAKEKDLPDIAELLKQILMLHHEVRPDIFHTRGSKFSKEQLKEMLIDESKPIFVYESDEGKVVAHLFLQLQEKRDLPRKSFKTLYIDDLCIDEEVRGQQIGQKLMDFARQYAKKHGCYNITLNVWNDNQRAVSFYEKLGFKPQQTQMEEIL
>NZ_ALRG01000016.1|WP_000665410.1|34991_35426_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKETQEELRQRIGHTAYQVTQNSATEHAFTGKYDDFFEEGIYVDIVSGEVLFSSLDKFQSGCGWPAFSKPIENRMVTNHQDHSHGMHRIEVRSRQADSHLGHVFNDGPVDAGGLRYCINSAALDFIPYDQMAKRGYGDYLSLFD
>NZ_ALRG01000016.1|WP_000168898.1|32047_34840_-|cation-transporting-P-type-ATPase
MASTNNVSDTNTRFAKEELEEVFEELGTTQGGLSDEEVAVRQKKYGLNLLSEVKQESIILLFLKNFTSLMAILLWVGGFVAIVSNSLELGLAIWMVNVINGIFSFIQEYRASQATQALEKMLPSYSRVLRKGSEEKILSEQLVPGDIVLIEEGDRISADGRLIKTTDLQVNQSALTGESNPIYKDSNVENDQSKTLIECDNMVFAGTTVSSGSATMVVTAIGMQTQFGQIADLTQGMKSEKSPLQRELDRLTKQISIISITVGIIFFLAATFFVKEPVSKSFIFALGMIVAFIPEGLLPTVTLSLAMAVQRMAKEHALVKKLSSVETLGATSVICSDKTGTLTQNEMTVNHLWQNGKSYQVTGLGYAPEGQILFEGDNICFGNSDRGDLEKLIRFAHLCSNAQVLPPNDDRSTYTVLGDPTEACLNVLLEKSGINIQENRKFAPRLKELPFDSVRKRMTTIHSLGGDEKDKKISITKGAPKEILDLSDYVLSDGKVIPLNKEERNKIQLANDTFAKDGLRVLAVSYCDIEGFSKEQWTQENLEQHMVFIGLIAMSDPPREGVREAIDKCHAASIRIIMVTGDYGLTALSIAKNIGIIRNDDAKVISGLELSEMTDSQLKKELSGEVVFARVAPEQKYRVVTILQEMGEVVAVTGDGVNDAPALKKSDIGVAMGVTGTDVAKESADMILTDDHFASIVHAVEEGRAVYQNIKKFLTYIFNSNTPEAVPSAFFLFSKGFIPLPLTVMQILAVDLGTDMLPALGLGVEPPETDVMNRPPRRLTDRLLDKGLLIKSFLWYGTIESVLAMGGFFWAHYLRYGNFTFFVANGIPYREATTMTLGAIIFSQIGMVMNSRTSYQSIKALSIFGNKLINFGIIMEILAFLVLVYVPLFHNLFNTASLGLSHWLYLISCPFIMIGLDEVRKLFSSRKNKR
>NZ_ALRG01000016.1|WP_000065321.1|30944_32048_-|DUF2974-domain-containing-protein
MSNIITYLKNNSNLTFDELALNDVDILCLNEFGYISFEKLINTTEMKSVLVCELYHEYLQTMAKSYSFMFTSQRHDLCQLMMTSKRFKNLTLSYYRAEISLEFEKQFAAMVFTIPNINYHQVVFRGTDANLIGWKEDFKLTYMREISAHRSAIKYLNTILPYFDKVVLSGHSKGGNLALYAAMFTKPDLKAKIDLIWLIDSPGLQKTLLPTTEYKTTKQKCIRLLPEESIVGMMLYSDIEPLIISSNARGILQHDVTTWEIQEPAILKTGTGLSLKSICFEKTFQQWMAELKSQERKLFFDLLFDSFLSSGVSSLDDFNLASRAKMMKAFHSFRELDDDKKRLFNKSLKLLVTIFWGAYHDNSRETK
>NZ_ALRG01000016.1|WP_000146566.1|30185_30824_+|CatB-related-O-acetyltransferase
MASILKKHLEKRLELKNDPMRTDMSTGASYPKYGFSVGKYTYGYQQFFYEGVNLKEIGAFCSIAQNVTITGLNHPTDHITTNPFIYYKSRGFINEDRADLIDEKKNGKVIIGNDVWIGTNVTILPSVTIGNGAIIGAGSVITKDIPDYGVVAGTPAKIIKYRFSEEEITLLNASQWWNWSDEAIKEHISEFSDKKEFFNTLKSISENKNHKL
>NZ_ALRG01000016.1|WP_000590706.1|43802_44468_-|type-II-A-CRISPR-associated-protein-Csn2
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
>NZ_ALRG01000016.1|WP_000122194.1|44454_44796_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNTANNAMIGRLKVNNPKKGNITLLTVTEKQFARMVYLHGERNTSVANSDSRLVFLGDSYDQD
>NZ_ALRG01000016.1|WP_000929489.1|44792_45662_-|type-II-CRISPR-associated-endonuclease-Cas1
MAGWRTVVVNTHSKLSYKNNHLIFKDSYQTEMIHLSEIDILIMETTDIVLSTMLIKRLVDENILVIFCDDKRLPTAMLMPYYARHDSSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLGECSFFEKSQSIMNLYHDLEPFDPSNREGHAARIYFNTLFGNDFSREQDNPINAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIIYENRQSDFVKMKRELFSMFSETYSYNGKEMYLSNIVSDYTKKVIKSLNSDGNGIPEFRI
>NZ_ALRG01000016.1|WP_001040087.1|45663_49776_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNKPYSIGLDIGTNSVGWSIITDDYKVPAKKMRVLGNTDKEYIKKNLIGALLFDGGNTAADRRLKRTARRRYTRRRNRILYLQEIFAEEMSKVDDSFFHRLEDSFLVEEDKRGSKYPIFATLQEEKDYHEKFSTIYHLRKELADKKEKADLRLIYIALAHIIKFRGHFLIEDDSFDVRNTDISKQYQDFLEIFNTTFENNDLLSQNVDVEAILTDKISKSAKKDRILAQYPNQKSTGIFAEFLKLIVGNQADFKKYFNLEDKTPLQFAKDSYDEDLENLLGQIGDEFADLFSAAKKLYDSVLLSGILTVIDLSTKAPLSASMIQRYDEHREDLKQLKQFVKASLPEKYQEIFADSSKDGYAGYIEGKTNQEAFYKYLSKLLTKQEDSENFLEKIKNEDFLRKQRTFDNGSIPHQVHLTELKAIIRRQSEYYPFLKENQDRIEKILTFRIPYYIGPLAREKSDFAWMTRKTDDSIRPWNFEDLVDKEKSAEAFIHRMTNNDFYLPEEKVLPKHSLIYEKFTVYNELTKVRYKNEQGETYFFDSNIKQEIFDGVFKEHRKVSKKKLLDFLAKEYEEFRIVDVIGLDKENKAFNASLGTYHDLEKILDKDFLDNPDNESILEDIVQTLTLFEDREMIKKRLENYKDLFTESQLKKLYRRHYTGWGRLSAKLINGIRDKESQKTILDYLIDDGRSNRNFMQLINDDGLSFKSIISKAQAGSHSDNLKEVVGELAGSPAIKKGILQSLKIVDELVKVMGYEPEQIVVEMARENQTTNQGRRNSRQRYKLLDDGVKNLASDLNGNILKEYPTDNQALQNERLFLYYLQNGRDMYTGEALDIDNLSQYDIDHIIPQAFIKDDSIDNRVLVSSAKNRGKSDDVPSLEIVKDCKVFWKKLLDAKLMSQRKYDNLTKAERGGLTSDDKARFIQRQLVETRQITKHVARILDERFNNELDSKGRRIRKVKIVTLKSNLVSNFRKEFGFYKIREVNNYHHAHDAYLNAVVAKAILTKYPQLEPEFVYGDYPKYNSYKTRKSATEKLFFYSNIMNFFKTKVTLADGTVVVKDDIEVNNDTGEIVWDKKKHFATVRKVLSYPQNNIVKKTEIQTGGFSKESILAHGNSDKLIPRKTKDIYLDPKKYGGFDSPIVAYSVLVVADIKKGKAQKLKTVTELLGITIMERSRFEKNPSAFLESKGYLNIRADKLIILPKYSLFELENGRRRLLASAGELQKGNELALPTQFMKFLYLASRYNESKGKPEEIEKKQEFVNQHVSYFDDILQLINDFSKRVILADANLEKINKLYQDNKENISVDELANNIINLFTFTSLGAPAAFKFFDKIVDRKRYTSTKEVLNSTLIHQSITGLYETRIDLGKLGED
>NZ_ALRG01000016.1|WP_000653357.1|50163_50820_-|TIGR01906-family-membrane-protein
MKDKLLVVLTWIWIISLATLATIYIAWLIYPIEIQFLKLEKVVYLKAETIYYNFNKLMIYLTHPFISDLNMPSFPSSEDGLKHFADVKYLFTLAHGLFVILTFPVIYFLRRGWKQKSIFLYEGFFKIAIMLPIFIVVCAFLLGFDQFFTLFHEVLFPGDSTWQFNPLTDPVIWILPETFFLHCFIIFLLIYETITIILLIIGRKHLKLRKYKNKMQAL
>NZ_ALRG01000016.1|WP_000323544.1|50809_51580_-|TIGR01457-family-HAD-type-hydrolase
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
>NZ_ALRG01000016.1|WP_000523795.1|51580_52318_-|acyl-ACP-thioesterase
MGLLYRETYEVPFYESDTNHYMKLPQLLALALQISAKQSLKLGIGDDIVFKRYGLVWVVTDYIIDIERLPKHAEKIVIETEAKAHNKLLCYRYFYIYGEDGQKIITISSAFVLMDFKTRKIHPVLDDITSIYQSQRIKKVIRGPKYHPIGDSKVKQYHVRYFDLDMNGHVNNSKYLEWMYDVLDLDFLSSHIPKKIDLKYIKEIQYGTDIKSHWYQDGLVTRHDIIGGDAIHAQARIEWQEKKED
>NZ_ALRG01000016.1|WP_000914664.1|52321_53452_-|oxygen-independent-coproporphyrinogen-III-oxidase
MLKKPTSAYVHIPFCTQICYYCDFSKVFIKNQPVDAYLQALIREFRSYDITELRTLYIGGGTPTSISAVQLDYLLTELSRDLNLNTLEEFTIEANPGDLTVDKIEVLQKSAVNRVSLGVQTFNDKHLKRIGRSHNEAQIYSTIDALKTAGFQNISIDLIYALPGQTMDDVRSNVAKALSLNIPHLSLYSLILEHHTVFMNKMRRGKLHLPTEDLEAEMFEYIISEMERNGFEHYEISNFTKPGFESRHNLMYWDNVEYYGVGAGASGYLDGIRYRNRGPIQHYLKGVSEGNARLSEEVLSKNEMMEEELFLGLRKKEGVSIGKFEQKFGTSFEKRYGQIVQELQSDGLLKENNGFIQMTKKGLFLGDTVAEKFIVE
>NZ_ALRG01000016.1|WP_001241816.1|53543_53924_-|hypothetical-protein
MRLWHQDIIELLPRQQLLGQHRECCALRGNGWGRKHETVDYVFRYSPYRLFAYHQLVMEEMMERGYRVSKEWLIAEYRGMKCPRYDTLNPVDLETPIYPEHNQDYLQECLWNLKAKGIDLPINKIK
>NZ_ALRG01000016.1|WP_000159234.1|53948_54320_-|YbgA-family-protein
MTKEAELLWAKHKYLVLSKSQKIYLDIRQTLKSPNCTVLDVQSLIDQAVLLEESPSQVTNAYMHIWGYFKNKAERQEKEEFLTLLEKYRKTGYQRRKLLAFLKQLLAKYPNSYLQNSSIFEEE

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_ALRG01000016_1	1.12\|43241\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43241-43270	30	NZ_ALRG01000038.1	23358-23387	2	0.933
NZ_ALRG01000016_1	1.15\|43439\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43439-43468	30	NZ_ALRG01000039.1	41168-41197	0	1.0
NZ_ALRG01000016_1	1.18\|43637\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43637-43666	30	NZ_ALRG01000009.1	11611-11640	0	1.0

1. spacer 1.12|43241|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to position: 23358-23387, mismatch: 2, identity: 0.933

tcctctatcggttttaacggcaatcaattg	CRISPR spacer
tcctcgatcggttttaatggcaatcaattg	Protospacer
***** ***********.************

2. spacer 1.15|43439|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to position: 41168-41197, mismatch: 0, identity: 1.0

attggaacattatgaagccgatgatatcat	CRISPR spacer
attggaacattatgaagccgatgatatcat	Protospacer
******************************

3. spacer 1.18|43637|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to position: 11611-11640, mismatch: 0, identity: 1.0

tttccgtcaattgattgcccaaaatcgtga	CRISPR spacer
tttccgtcaattgattgcccaaaatcgtga	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	MK448790	Streptococcus phage Javan515, complete genome	1426-1455	0	1.0
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	MK448957	Streptococcus phage Javan484, complete genome	1422-1451	0	1.0
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448956	Streptococcus phage Javan48, complete genome	13968-13997	0	1.0
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448749	Streptococcus phage Javan39, complete genome	13968-13997	0	1.0
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MK448675	Streptococcus phage Javan129, complete genome	10387-10416	0	1.0
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MK448771	Streptococcus phage Javan481, complete genome	6321-6350	0	1.0
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MK448973	Streptococcus phage Javan522, complete genome	8226-8255	0	1.0
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MK448774	Streptococcus phage Javan487, complete genome	6306-6335	0	1.0
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MK448778	Streptococcus phage Javan493, complete genome	8241-8270	0	1.0
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MK448958	Streptococcus phage Javan486, complete genome	8550-8579	0	1.0
NZ_ALRG01000016_1	1.10\|43109\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43109-43138	30	JX409894	Streptococcus phage LYGO9, complete genome	37492-37521	0	1.0
NZ_ALRG01000016_1	1.12\|43241\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43241-43270	30	JX409894	Streptococcus phage LYGO9, complete genome	12056-12085	0	1.0
NZ_ALRG01000016_1	1.12\|43241\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43241-43270	30	MK448956	Streptococcus phage Javan48, complete genome	35058-35087	0	1.0
NZ_ALRG01000016_1	1.12\|43241\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43241-43270	30	MK448749	Streptococcus phage Javan39, complete genome	36640-36669	0	1.0
NZ_ALRG01000016_1	1.12\|43241\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43241-43270	30	JX409895	Streptococcus phage JX01, complete genome	23903-23932	0	1.0
NZ_ALRG01000016_1	1.12\|43241\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43241-43270	30	MH853356	Streptococcus phage LF2, partial genome	26338-26367	0	1.0
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448768	Streptococcus phage Javan47, complete genome	6556-6585	0	1.0
NZ_ALRG01000016_1	1.14\|43373\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43373-43402	30	MK448768	Streptococcus phage Javan47, complete genome	7216-7245	0	1.0
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MK448850	Streptococcus phage Javan132, complete genome	10906-10935	1	0.967
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MK448851	Streptococcus phage Javan14, complete genome	11717-11746	1	0.967
NZ_ALRG01000016_1	1.12\|43241\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43241-43270	30	MK448971	Streptococcus phage Javan52, complete genome	37042-37071	1	0.967
NZ_ALRG01000016_1	1.12\|43241\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43241-43270	30	MK448829	Streptococcus phage Javan7, complete genome	31735-31764	1	0.967
NZ_ALRG01000016_1	1.12\|43241\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43241-43270	30	MH853355	Streptococcus phage LF1, complete genome	22592-22621	1	0.967
NZ_ALRG01000016_1	1.12\|43241\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43241-43270	30	MH853358	Streptococcus phage LF4, complete genome	22592-22621	1	0.967
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448965	Streptococcus phage Javan506, complete genome	5157-5186	1	0.967
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448859	Streptococcus phage Javan170, complete genome	6713-6742	1	0.967
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448959	Streptococcus phage Javan488, complete genome	5157-5186	1	0.967
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448686	Streptococcus phage Javan157, complete genome	5261-5290	1	0.967
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448729	Streptococcus phage Javan31, complete genome	6555-6584	1	0.967
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448949	Streptococcus phage Javan460, complete genome	5157-5186	1	0.967
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448951	Streptococcus phage Javan470, complete genome	5261-5290	1	0.967
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448691	Streptococcus phage Javan17, complete genome	6555-6584	1	0.967
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448688	Streptococcus phage Javan161, complete genome	6710-6739	1	0.967
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448948	Streptococcus phage Javan46, complete genome	6555-6584	1	0.967
NZ_ALRG01000016_1	1.3\|42647\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42647-42676	30	MK448796	Streptococcus phage Javan53, complete genome	1809-1838	2	0.933
NZ_ALRG01000016_1	1.3\|42647\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42647-42676	30	MK448736	Streptococcus phage Javan35, complete genome	1709-1738	2	0.933
NZ_ALRG01000016_1	1.3\|42647\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42647-42676	30	MK448781	Streptococcus phage Javan5, complete genome	1709-1738	2	0.933
NZ_ALRG01000016_1	1.3\|42647\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42647-42676	30	MK448938	Streptococcus phage Javan44, complete genome	1709-1738	2	0.933
NZ_ALRG01000016_1	1.3\|42647\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42647-42676	30	MK448911	Streptococcus phage Javan34, complete genome	1709-1738	2	0.933
NZ_ALRG01000016_1	1.3\|42647\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42647-42676	30	MK448916	Streptococcus phage Javan36, complete genome	1709-1738	2	0.933
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	HG424323	Streptococcus phage 20617 complete prophage genome	40561-40590	2	0.933
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448704	Streptococcus phage Javan213, complete genome	11298-11327	2	0.933
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448734	Streptococcus phage Javan347, complete genome	8977-9006	2	0.933
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448876	Streptococcus phage Javan214, complete genome	11800-11829	2	0.933
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MK448681	Streptococcus phage Javan141, complete genome	6109-6138	2	0.933
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MK448944	Streptococcus phage Javan452, complete genome	10585-10614	2	0.933
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MK448672	Streptococcus phage Javan117, complete genome	6167-6196	2	0.933
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MK448849	Streptococcus phage Javan128, complete genome	6260-6289	2	0.933
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MH853356	Streptococcus phage LF2, partial genome	7489-7518	2	0.933
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MK448933	Streptococcus phage Javan420, complete genome	10082-10111	2	0.933
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MK448845	Streptococcus phage Javan118, complete genome	8048-8077	2	0.933
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MK448673	Streptococcus phage Javan119, complete genome	9523-9552	2	0.933
NZ_ALRG01000016_1	1.10\|43109\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43109-43138	30	MK448845	Streptococcus phage Javan118, complete genome	8851-8880	2	0.933
NZ_ALRG01000016_1	1.12\|43241\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43241-43270	30	MK448837	Streptococcus phage Javan10, complete genome	30270-30299	2	0.933
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448724	Streptococcus phage Javan273, complete genome	5532-5561	2	0.933
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448676	Streptococcus phage Javan131, complete genome	6684-6713	2	0.933
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MH892366	Streptococcus phage SW18, complete genome	22497-22526	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MH937501	Streptococcus phage CHPC1073, complete genome	20886-20915	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MH973662	Streptococcus phage SW7, complete genome	22351-22380	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MH892373	Streptococcus phage SW27, complete genome	19539-19568	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	KY705256	Streptococcus phage P3681, complete genome	23190-23219	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MF161328	Streptococcus phage D4276, complete genome	21671-21700	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	KX879643	Streptococcus phage CHPC1151, complete genome	20070-20099	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MH937458	Streptococcus phage CHPC572, complete genome	22116-22145	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MH892363	Streptococcus phage SW14, complete genome	23138-23167	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	KY705252	Streptococcus phage P0092, complete genome	19588-19617	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MH937506	Streptococcus phage CHPC1148, complete genome	21012-21041	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MH937486	Streptococcus phage CHPC1027, complete genome	21636-21665	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MH937471	Streptococcus phage CHPC927, complete genome	23002-23031	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	KY705282	Streptococcus phage P8921, complete genome	22072-22101	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	KY705253	Streptococcus phage P0093, complete genome	19588-19617	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	KY705287	Streptococcus phage P9854, complete genome	23623-23652	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MH892367	Streptococcus phage SW19, complete genome	20151-20180	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MH892355	Streptococcus phage SW4, complete genome	19443-19472	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	KY705263	Streptococcus phage P7133, complete genome	21137-21166	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MH937467	Streptococcus phage CHPC877, complete genome	22120-22149	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	KY705254	Streptococcus phage P0094, complete genome	19588-19617	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	KY705264	Streptococcus phage P7134, complete genome	20896-20925	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	KY705260	Streptococcus phage P5651, complete genome	21779-21808	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	KY705284	Streptococcus phage P9851, complete genome	22500-22529	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MH973663	Streptococcus phage SW24, complete genome	19662-19691	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	KY705272	Streptococcus phage P7601, complete genome	22668-22697	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MH937488	Streptococcus phage CHPC1033, complete genome	22921-22950	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	KY705271	Streptococcus phage P7574, complete genome	21221-21250	3	0.9
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	KY705265	Streptococcus phage P7151, complete genome	22501-22530	3	0.9
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448796	Streptococcus phage Javan53, complete genome	17381-17410	3	0.9
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448822	Streptococcus phage Javan629, complete genome	13388-13417	3	0.9
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448711	Streptococcus phage Javan235, complete genome	11857-11886	3	0.9
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448736	Streptococcus phage Javan35, complete genome	13064-13093	4	0.867
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448781	Streptococcus phage Javan5, complete genome	15086-15115	4	0.867
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448938	Streptococcus phage Javan44, complete genome	13065-13094	4	0.867
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	HG424323	Streptococcus phage 20617 complete prophage genome	15101-15130	4	0.867
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448911	Streptococcus phage Javan34, complete genome	13064-13093	4	0.867
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448916	Streptococcus phage Javan36, complete genome	13064-13093	4	0.867
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448755	Streptococcus phage Javan423, complete genome	12783-12812	4	0.867
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448756	Streptococcus phage Javan425, complete genome	12783-12812	4	0.867
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448707	Streptococcus phage Javan227, complete genome	16383-16412	4	0.867
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448954	Streptococcus phage Javan476, complete genome	12435-12464	4	0.867
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK449012	Streptococcus phage Javan94, complete genome	12477-12506	4	0.867
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448680	Streptococcus phage Javan139, complete genome	10668-10697	4	0.867
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448702	Streptococcus phage Javan199, complete genome	6813-6842	4	0.867
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448718	Streptococcus phage Javan253, complete genome	8847-8876	4	0.867
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	MK448930	Streptococcus phage Javan406, complete genome	7057-7086	4	0.867
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	NC_000872	Streptococcus phage Sfi21, complete genome	36726-36755	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	KY705251	Streptococcus phage P0091, complete genome	31406-31435	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	KY705273	Streptococcus phage P7602, complete genome	33980-34009	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MH937473	Streptococcus phage CHPC929, complete genome	35982-36011	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MH892360	Streptococcus phage SW11, complete genome	33275-33304	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MH892353	Streptococcus phage SW2, complete genome	34246-34275	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	KY705277	Streptococcus phage P7951, complete genome	31360-31389	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	NC_000871	Streptococcus phage Sfi19, complete genome	35421-35450	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MH937464	Streptococcus phage CHPC869, complete genome	34213-34242	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MH937480	Streptococcus phage CHPC954, complete genome	34114-34143	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448753	Streptococcus phage Javan407, complete genome	12528-12557	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MH937475	Streptococcus phage CHPC931, complete genome	33663-33692	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MF417967	Uncultured Caudovirales phage clone 3S_16, partial genome	7733-7762	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	AF158601	Streptococcus thermophilus bacteriophage SFi18 lysin, gp111, gp183, gp47, gp54, gp71, gp145, gp69, gp40, gp229, gp157, gp233, putative helicase, gp151, gp271, putative primase, gp143, gp106, gp89, gp57, gp51, gp66, gp192, putative DNA binding protein, gp99, and gp235 genes, complete cds	12499-12528	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	KY705268	Streptococcus phage P7571, complete genome	32083-32112	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	KY705269	Streptococcus phage P7572, complete genome	30586-30615	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	KY705281	Streptococcus phage P7955, complete genome	33997-34026	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	AF115103	Streptococcus thermophilus bacteriophage Sfi21, complete genome	36726-36755	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	NC_013645	Streptococcus phage Abc2, complete genome	31500-31529	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	AF115102	Streptococcus thermophilus bacteriophage Sfi19, complete genome	35421-35450	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	FJ226752	Streptococcus phage ALQ13.2, complete genome	32704-32733	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	NC_002214	Streptococcus thermophilus bacteriophage Sfi11, complete genome	37427-37456	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	KY705272	Streptococcus phage P7601, complete genome	32090-32119	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	KY705271	Streptococcus phage P7574, complete genome	32891-32920	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MH937505	Streptococcus phage CHPC1109, complete genome	30694-30723	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MH937469	Streptococcus phage CHPC919, complete genome	33754-33783	5	0.833
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MH937491	Streptococcus phage CHPC1037, partial genome	33178-33207	5	0.833
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	NC_018685	Bacillus thuringiensis MC28 plasmid pMC95, complete sequence	82837-82866	6	0.8
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MK448890	Streptococcus phage Javan264, complete genome	30767-30796	6	0.8
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448896	Streptococcus phage Javan278, complete genome	6108-6137	6	0.8
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448757	Streptococcus phage Javan427, complete genome	14224-14253	6	0.8
NZ_ALRG01000016_1	1.7\|42911\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42911-42940	30	KY065466	Streptococcus phage IPP25, complete genome	30380-30409	6	0.8
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	NZ_LR215001	Mycoplasma conjunctivae strain NCTC10147 plasmid 5	12151-12180	6	0.8
NZ_ALRG01000016_1	1.16\|43505\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43505-43534	30	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	484680-484709	6	0.8
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	NZ_CP034168	Enterococcus avium strain 352 plasmid unnamed, complete sequence	14259-14288	7	0.767
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	180131-180160	7	0.767
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	130740-130769	7	0.767
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	124624-124653	7	0.767
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	2565-2594	7	0.767
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	1843-1872	7	0.767
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	40599-40628	7	0.767
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	NC_015417	Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence	153049-153078	7	0.767
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	130740-130769	7	0.767
NZ_ALRG01000016_1	1.3\|42647\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42647-42676	30	MN399336	Edwardsiella phage vB_EtaM_ET-ABTNL-9, complete genome	82194-82223	7	0.767
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	NZ_CP006727	Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence	30951-30980	7	0.767
NZ_ALRG01000016_1	1.5\|42779\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42779-42808	30	MK448885	Streptococcus phage Javan252, complete genome	13038-13067	7	0.767
NZ_ALRG01000016_1	1.6\|42845\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42845-42874	30	MN602266	Bacteriophage DSS3_VP1, complete genome	51181-51210	7	0.767
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	NZ_CP046711	Nostoc sp. ATCC 53789 plasmid pNsp_h, complete sequence	4779-4808	7	0.767
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	NZ_CP044508	Chryseobacterium sp. strain SNU WT7 plasmid unnamed1, complete sequence	61119-61148	7	0.767
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	NC_007410	Trichormus variabilis ATCC 29413 plasmid A, complete sequence	322453-322482	7	0.767
NZ_ALRG01000016_1	1.13\|43307\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43307-43336	30	NZ_CP047243	Trichormus variabilis 0441 plasmid unnamed1, complete sequence	328178-328207	7	0.767
NZ_ALRG01000016_1	1.15\|43439\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43439-43468	30	MK250029	Prevotella phage Lak-C1, complete genome	108579-108608	7	0.767
NZ_ALRG01000016_1	1.15\|43439\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43439-43468	30	MK250016	Prevotella phage Lak-A1, complete genome	148068-148097	7	0.767
NZ_ALRG01000016_1	1.15\|43439\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43439-43468	30	MK250019	Prevotella phage Lak-A2, complete genome	71115-71144	7	0.767
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	NC_018878	Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence	27063-27092	8	0.733
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	NC_048665	Clostridium phage phiCDHM14, complete genome	22262-22291	8	0.733
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	KU057941	Clostridium phage CDSH1, complete genome	28658-28687	8	0.733
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	MK473382	Clostridium phage JD032, complete genome	12174-12203	8	0.733
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	LN881738	Escherichia phage slur17, complete genome	33369-33398	8	0.733
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	NC_028905	Clostridium phage phiCD111, complete genome	28432-28461	8	0.733
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	HG796225	Clostridium phage phiCDHM13 complete genome	21762-21791	8	0.733
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	LN681538	Clostridium phage phiCD481-1, complete genome	21502-21531	8	0.733
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	HG798901	Clostridium phage phiCDHM11 complete genome	21762-21791	8	0.733
NZ_ALRG01000016_1	1.3\|42647\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42647-42676	30	NZ_MF925335	Edwardsiella tarda strain 150611-1 plasmid p150611 1B-1, complete sequence	2614-2643	8	0.733
NZ_ALRG01000016_1	1.3\|42647\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42647-42676	30	NC_011668	Shewanella baltica OS223 plasmid pS22302, complete sequence	56767-56796	8	0.733
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	NC_014260	Enterobacteria phage IME08, complete genome	88967-88996	8	0.733
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MN850621	Escherichia phage dhabil, complete genome	126317-126346	8	0.733
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MN850609	Escherichia phage dhaeg, complete genome	76845-76874	8	0.733
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	HM071924	Enterobacteria phage IME08, complete sequence	88967-88996	8	0.733
NZ_ALRG01000016_1	1.4\|42713\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42713-42742	30	MH051917	Enterobacteria phage vB_EcoM_IME341, complete genome	85432-85461	8	0.733
NZ_ALRG01000016_1	1.7\|42911\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42911-42940	30	NZ_CP017461	Staphylococcus nepalensis strain JS1 plasmid pSNJS101, complete sequence	54424-54453	8	0.733
NZ_ALRG01000016_1	1.7\|42911\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	42911-42940	30	NZ_CP006989	Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence	115731-115760	8	0.733
NZ_ALRG01000016_1	1.9\|43043\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43043-43072	30	MG592660	Vibrio phage 1.293.O._10N.261.52.E1, partial genome	7362-7391	8	0.733
NZ_ALRG01000016_1	1.14\|43373\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43373-43402	30	MN018232	Synechococcus phage S-B43, complete genome	59252-59281	8	0.733
NZ_ALRG01000016_1	1.14\|43373\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43373-43402	30	MK799832	Synechococcus phage S-B05, complete genome	169058-169087	8	0.733
NZ_ALRG01000016_1	1.14\|43373\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43373-43402	30	MN693091	Marine virus AFVG_25M527, complete genome	39508-39537	8	0.733
NZ_ALRG01000016_1	1.14\|43373\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43373-43402	30	MK016663	Synechococcus phage S-H68, complete genome	21388-21417	8	0.733
NZ_ALRG01000016_1	1.15\|43439\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43439-43468	30	NC_014825	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence	234700-234729	8	0.733
NZ_ALRG01000016_1	1.16\|43505\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43505-43534	30	NZ_CP045270	Bacillus megaterium strain FDU301 plasmid pFDU301H, complete sequence	8858-8887	8	0.733
NZ_ALRG01000016_1	1.16\|43505\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43505-43534	30	MK449000	Streptococcus phage Javan64, complete genome	15281-15310	8	0.733
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	NC_028838	Clostridium phage phiCD506, complete genome	22083-22112	9	0.7
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	HM568888	Clostridium phage phiCD38-2, complete genome	28154-28183	9	0.7
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	NC_028958	Clostridium phage phiCD146, complete genome	27716-27745	9	0.7
NZ_ALRG01000016_1	1.16\|43505\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43505-43534	30	NZ_MG205641	Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence	30654-30683	9	0.7
NZ_ALRG01000016_1	1.16\|43505\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43505-43534	30	NZ_MG205643	Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence	23758-23787	9	0.7
NZ_ALRG01000016_1	1.16\|43505\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43505-43534	30	NZ_MG205642	Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence	30654-30683	9	0.7
NZ_ALRG01000016_1	1.2\|42581\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder	42581-42610	30	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	640927-640956	10	0.667
NZ_ALRG01000016_1	1.15\|43439\|30\|NZ_ALRG01000016\|CRT,CRISPRCasFinder,PILER-CR	43439-43468	30	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	324205-324234	10	0.667

1. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 0, identity: 1.0

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
gatggagtgttagaagaattaaaaagaaga	Protospacer
******************************

2. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to MK448957 (Streptococcus phage Javan484, complete genome) position: , mismatch: 0, identity: 1.0

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
gatggagtgttagaagaattaaaaagaaga	Protospacer
******************************

3. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 0, identity: 1.0

caatccaatcagccacaaactgtggcactt	CRISPR spacer
caatccaatcagccacaaactgtggcactt	Protospacer
******************************

4. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 0, identity: 1.0

caatccaatcagccacaaactgtggcactt	CRISPR spacer
caatccaatcagccacaaactgtggcactt	Protospacer
******************************

5. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 0, identity: 1.0

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
attaagtcatcaaggctgtttgtttcttgt	Protospacer
******************************

6. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448771 (Streptococcus phage Javan481, complete genome) position: , mismatch: 0, identity: 1.0

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
attaagtcatcaaggctgtttgtttcttgt	Protospacer
******************************

7. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448973 (Streptococcus phage Javan522, complete genome) position: , mismatch: 0, identity: 1.0

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
attaagtcatcaaggctgtttgtttcttgt	Protospacer
******************************

8. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448774 (Streptococcus phage Javan487, complete genome) position: , mismatch: 0, identity: 1.0

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
attaagtcatcaaggctgtttgtttcttgt	Protospacer
******************************

9. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 0, identity: 1.0

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
attaagtcatcaaggctgtttgtttcttgt	Protospacer
******************************

10. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 0, identity: 1.0

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
attaagtcatcaaggctgtttgtttcttgt	Protospacer
******************************

11. spacer 1.10|43109|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 0, identity: 1.0

tcacaggtttacttggtggcgtggaattca	CRISPR spacer
tcacaggtttacttggtggcgtggaattca	Protospacer
******************************

12. spacer 1.12|43241|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 0, identity: 1.0

tcctctatcggttttaacggcaatcaattg	CRISPR spacer
tcctctatcggttttaacggcaatcaattg	Protospacer
******************************

13. spacer 1.12|43241|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 0, identity: 1.0

tcctctatcggttttaacggcaatcaattg	CRISPR spacer
tcctctatcggttttaacggcaatcaattg	Protospacer
******************************

14. spacer 1.12|43241|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 0, identity: 1.0

tcctctatcggttttaacggcaatcaattg	CRISPR spacer
tcctctatcggttttaacggcaatcaattg	Protospacer
******************************

15. spacer 1.12|43241|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to JX409895 (Streptococcus phage JX01, complete genome) position: , mismatch: 0, identity: 1.0

tcctctatcggttttaacggcaatcaattg	CRISPR spacer
tcctctatcggttttaacggcaatcaattg	Protospacer
******************************

16. spacer 1.12|43241|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 0, identity: 1.0

tcctctatcggttttaacggcaatcaattg	CRISPR spacer
tcctctatcggttttaacggcaatcaattg	Protospacer
******************************

17. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448768 (Streptococcus phage Javan47, complete genome) position: , mismatch: 0, identity: 1.0

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
acaagctatactatgctaaaaaatcaaatt	Protospacer
******************************

18. spacer 1.14|43373|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448768 (Streptococcus phage Javan47, complete genome) position: , mismatch: 0, identity: 1.0

caacaagttccagagaatgaaacaggtcaa	CRISPR spacer
caacaagttccagagaatgaaacaggtcaa	Protospacer
******************************

19. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 1, identity: 0.967

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
attaaatcatcaaggctgtttgtttcttgt	Protospacer
*****.************************

20. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 1, identity: 0.967

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
attaaatcatcaaggctgtttgtttcttgt	Protospacer
*****.************************

21. spacer 1.12|43241|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448971 (Streptococcus phage Javan52, complete genome) position: , mismatch: 1, identity: 0.967

tcctctatcggttttaacggcaatcaattg	CRISPR spacer
tcctctatcggttttaacggcaatcaatta	Protospacer
*****************************.

22. spacer 1.12|43241|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 1, identity: 0.967

tcctctatcggttttaacggcaatcaattg	CRISPR spacer
tcctctatcggttttaacggcaatcaatta	Protospacer
*****************************.

23. spacer 1.12|43241|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 1, identity: 0.967

tcctctatcggttttaacggcaatcaattg	CRISPR spacer
tcctctatcggttttaacggcaatcaatta	Protospacer
*****************************.

24. spacer 1.12|43241|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 1, identity: 0.967

tcctctatcggttttaacggcaatcaattg	CRISPR spacer
tcctctatcggttttaacggcaatcaatta	Protospacer
*****************************.

25. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 1, identity: 0.967

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
acaagctacactatgctaaaaaatcaaatt	Protospacer
********.*********************

26. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448859 (Streptococcus phage Javan170, complete genome) position: , mismatch: 1, identity: 0.967

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
acaagctacactatgctaaaaaatcaaatt	Protospacer
********.*********************

27. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448959 (Streptococcus phage Javan488, complete genome) position: , mismatch: 1, identity: 0.967

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
acaagctacactatgctaaaaaatcaaatt	Protospacer
********.*********************

28. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448686 (Streptococcus phage Javan157, complete genome) position: , mismatch: 1, identity: 0.967

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
acaagctacactatgctaaaaaatcaaatt	Protospacer
********.*********************

29. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448729 (Streptococcus phage Javan31, complete genome) position: , mismatch: 1, identity: 0.967

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
acaagctacactatgctaaaaaatcaaatt	Protospacer
********.*********************

30. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448949 (Streptococcus phage Javan460, complete genome) position: , mismatch: 1, identity: 0.967

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
acaagctacactatgctaaaaaatcaaatt	Protospacer
********.*********************

31. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448951 (Streptococcus phage Javan470, complete genome) position: , mismatch: 1, identity: 0.967

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
acaagctacactatgctaaaaaatcaaatt	Protospacer
********.*********************

32. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448691 (Streptococcus phage Javan17, complete genome) position: , mismatch: 1, identity: 0.967

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
acaagctacactatgctaaaaaatcaaatt	Protospacer
********.*********************

33. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448688 (Streptococcus phage Javan161, complete genome) position: , mismatch: 1, identity: 0.967

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
acaagctacactatgctaaaaaatcaaatt	Protospacer
********.*********************

34. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448948 (Streptococcus phage Javan46, complete genome) position: , mismatch: 1, identity: 0.967

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
acaagctacactatgctaaaaaatcaaatt	Protospacer
********.*********************

35. spacer 1.3|42647|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 2, identity: 0.933

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
tcacttgtgaaatatcctcagaagataaaa	Protospacer
****************.**********.**

36. spacer 1.3|42647|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to MK448736 (Streptococcus phage Javan35, complete genome) position: , mismatch: 2, identity: 0.933

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
tcacttgtgaaatatcctcagaagataaaa	Protospacer
****************.**********.**

37. spacer 1.3|42647|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 2, identity: 0.933

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
tcacttgtgaaatatcctcagaagataaaa	Protospacer
****************.**********.**

38. spacer 1.3|42647|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to MK448938 (Streptococcus phage Javan44, complete genome) position: , mismatch: 2, identity: 0.933

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
tcacttgtgaaatatcctcagaagataaaa	Protospacer
****************.**********.**

39. spacer 1.3|42647|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to MK448911 (Streptococcus phage Javan34, complete genome) position: , mismatch: 2, identity: 0.933

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
tcacttgtgaaatatcctcagaagataaaa	Protospacer
****************.**********.**

40. spacer 1.3|42647|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to MK448916 (Streptococcus phage Javan36, complete genome) position: , mismatch: 2, identity: 0.933

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
tcacttgtgaaatatcctcagaagataaaa	Protospacer
****************.**********.**

41. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to HG424323 (Streptococcus phage 20617 complete prophage genome) position: , mismatch: 2, identity: 0.933

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agagttactgttgatggtagtccttgaata	Protospacer
************** **************.

42. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448704 (Streptococcus phage Javan213, complete genome) position: , mismatch: 2, identity: 0.933

caatccaatcagccacaaactgtggcactt	CRISPR spacer
caatccaatcagccacaaattgtggcacta	Protospacer
*******************.*********

43. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448734 (Streptococcus phage Javan347, complete genome) position: , mismatch: 2, identity: 0.933

caatccaatcagccacaaactgtggcactt	CRISPR spacer
caatccaatccgccacaaactgtggcacta	Protospacer
********** ******************

44. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448876 (Streptococcus phage Javan214, complete genome) position: , mismatch: 2, identity: 0.933

caatccaatcagccacaaactgtggcactt	CRISPR spacer
caatccaatcagccacaaattgtggcacta	Protospacer
*******************.*********

45. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 2, identity: 0.933

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
attaagtcgtcaaggctatttgtttcttgt	Protospacer
********.********.************

46. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 2, identity: 0.933

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
atcaagtcgtcaaggctgtttgtttcttgt	Protospacer
**.*****.*********************

47. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 2, identity: 0.933

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
atcaagtcgtcaaggctgtttgtttcttgt	Protospacer
**.*****.*********************

48. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 2, identity: 0.933

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
atcaagtcgtcaaggctgtttgtttcttgt	Protospacer
**.*****.*********************

49. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 2, identity: 0.933

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
attaaatcatcaagactgtttgtttcttgt	Protospacer
*****.********.***************

50. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448933 (Streptococcus phage Javan420, complete genome) position: , mismatch: 2, identity: 0.933

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
attaagtcgtcaaggctgtttgtttctggt	Protospacer
********.****************** **

51. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448845 (Streptococcus phage Javan118, complete genome) position: , mismatch: 2, identity: 0.933

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
attaagtcgtcaaggctatttgtttcttgt	Protospacer
********.********.************

52. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448673 (Streptococcus phage Javan119, complete genome) position: , mismatch: 2, identity: 0.933

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
attaagtcgtcaaggctatttgtttcttgt	Protospacer
********.********.************

53. spacer 1.10|43109|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448845 (Streptococcus phage Javan118, complete genome) position: , mismatch: 2, identity: 0.933

tcacaggtttacttggtggcgtggaattca	CRISPR spacer
tcacaggtttaattggtggtgtggaattca	Protospacer
*********** *******.**********

54. spacer 1.12|43241|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 2, identity: 0.933

tcctctatcggttttaacggcaatcaattg	CRISPR spacer
tcctcgatcggttttaatggcaatcaattg	Protospacer
***** ***********.************

55. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448724 (Streptococcus phage Javan273, complete genome) position: , mismatch: 2, identity: 0.933

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
acaagttacactatgctaaaaaatcaaatt	Protospacer
*****.**.*********************

56. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448676 (Streptococcus phage Javan131, complete genome) position: , mismatch: 2, identity: 0.933

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
acaagctacactatgctaaagaatcaaatt	Protospacer
********.***********.*********

57. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH892366 (Streptococcus phage SW18, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

58. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH937501 (Streptococcus phage CHPC1073, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

59. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH973662 (Streptococcus phage SW7, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

60. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH892373 (Streptococcus phage SW27, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

61. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705256 (Streptococcus phage P3681, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

62. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MF161328 (Streptococcus phage D4276, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgaaggtagtccttgaata	Protospacer
**.***********.**************.

63. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KX879643 (Streptococcus phage CHPC1151, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

64. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH937458 (Streptococcus phage CHPC572, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

65. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH892363 (Streptococcus phage SW14, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

66. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705252 (Streptococcus phage P0092, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

67. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH937506 (Streptococcus phage CHPC1148, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agagttacggttgatggtagtccttgaata	Protospacer
******** ***** **************.

68. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH937486 (Streptococcus phage CHPC1027, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

69. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH937471 (Streptococcus phage CHPC927, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

70. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705282 (Streptococcus phage P8921, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

71. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705253 (Streptococcus phage P0093, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

72. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705287 (Streptococcus phage P9854, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

73. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH892367 (Streptococcus phage SW19, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

74. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH892355 (Streptococcus phage SW4, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

75. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705263 (Streptococcus phage P7133, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

76. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH937467 (Streptococcus phage CHPC877, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

77. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705254 (Streptococcus phage P0094, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

78. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705264 (Streptococcus phage P7134, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

79. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705260 (Streptococcus phage P5651, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

80. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705284 (Streptococcus phage P9851, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

81. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH973663 (Streptococcus phage SW24, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

82. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705272 (Streptococcus phage P7601, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

83. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH937488 (Streptococcus phage CHPC1033, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

84. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705271 (Streptococcus phage P7574, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

85. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705265 (Streptococcus phage P7151, complete genome) position: , mismatch: 3, identity: 0.9

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agggttactgttgatggtagtccttgaata	Protospacer
**.*********** **************.

86. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 3, identity: 0.9

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagcaacaaactgtggcactt	Protospacer
**  ********* ****************

87. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448822 (Streptococcus phage Javan629, complete genome) position: , mismatch: 3, identity: 0.9

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagcaacaaactgtggcactt	Protospacer
**  ********* ****************

88. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448711 (Streptococcus phage Javan235, complete genome) position: , mismatch: 3, identity: 0.9

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
tcaagctataccatgctaaaaaatgaaatt	Protospacer
 **********.************ *****

89. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448736 (Streptococcus phage Javan35, complete genome) position: , mismatch: 4, identity: 0.867

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cgtaccaatcagccacaaaccgtggcactt	Protospacer
*.  ****************.*********

90. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 4, identity: 0.867

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cgtaccaatcagccacaaaccgtggcactt	Protospacer
*.  ****************.*********

91. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448938 (Streptococcus phage Javan44, complete genome) position: , mismatch: 4, identity: 0.867

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cgtaccaatcagccacaaaccgtggcactt	Protospacer
*.  ****************.*********

92. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to HG424323 (Streptococcus phage 20617 complete prophage genome) position: , mismatch: 4, identity: 0.867

caatccaatcagccacaaactgtggcactt	CRISPR spacer
aaatccaatcagccacaaattgtggaacta	Protospacer
 ******************.***** ***

93. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448911 (Streptococcus phage Javan34, complete genome) position: , mismatch: 4, identity: 0.867

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cgtaccaatcagccacaaaccgtggcactt	Protospacer
*.  ****************.*********

94. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448916 (Streptococcus phage Javan36, complete genome) position: , mismatch: 4, identity: 0.867

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cgtaccaatcagccacaaaccgtggcactt	Protospacer
*.  ****************.*********

95. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448755 (Streptococcus phage Javan423, complete genome) position: , mismatch: 4, identity: 0.867

caatccaatcagccacaaactgtggcactt	CRISPR spacer
ctatccaatcagccacaaacttcggcacta	Protospacer
* ******************* .******

96. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448756 (Streptococcus phage Javan425, complete genome) position: , mismatch: 4, identity: 0.867

caatccaatcagccacaaactgtggcactt	CRISPR spacer
ctatccaatcagccacaaacttcggcacta	Protospacer
* ******************* .******

97. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448707 (Streptococcus phage Javan227, complete genome) position: , mismatch: 4, identity: 0.867

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacaaattgtggcacta	Protospacer
**  ***************.*********

98. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 4, identity: 0.867

caatccaatcagccacaaactgtggcactt	CRISPR spacer
ctacccaatcagccacaaactgaggcacta	Protospacer
* *.****************** ******

99. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK449012 (Streptococcus phage Javan94, complete genome) position: , mismatch: 4, identity: 0.867

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacaaattgtggaactt	Protospacer
**  ***************.***** ****

100. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448680 (Streptococcus phage Javan139, complete genome) position: , mismatch: 4, identity: 0.867

caatccaatcagccacaaactgtggcactt	CRISPR spacer
ctagccaatcagccacaaactgcgggactt	Protospacer
* * ******************.** ****

101. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448702 (Streptococcus phage Javan199, complete genome) position: , mismatch: 4, identity: 0.867

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
tcaagctataccatgctaaaaaatgaaatc	Protospacer
 **********.************ ****.

102. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448718 (Streptococcus phage Javan253, complete genome) position: , mismatch: 4, identity: 0.867

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
tcaagctataccatgcttaaaaatcaaatc	Protospacer
 **********.***** ***********.

103. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448930 (Streptococcus phage Javan406, complete genome) position: , mismatch: 4, identity: 0.867

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
acaagctacactatgctaaaaaatgaatta	Protospacer
********.*************** ** *

104. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NC_000872 (Streptococcus phage Sfi21, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

105. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705251 (Streptococcus phage P0091, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatccgccacaaactttggcactg	Protospacer
**  ****** ********** *******

106. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705273 (Streptococcus phage P7602, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

107. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH937473 (Streptococcus phage CHPC929, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

108. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH892360 (Streptococcus phage SW11, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

109. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH892353 (Streptococcus phage SW2, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacaaactgcggtacta	Protospacer
**  ******************.**.***

110. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705277 (Streptococcus phage P7951, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

111. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NC_000871 (Streptococcus phage Sfi19, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

112. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH937464 (Streptococcus phage CHPC869, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

113. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH937480 (Streptococcus phage CHPC954, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

114. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448753 (Streptococcus phage Javan407, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccactccgccacaaactgtggcacta	Protospacer
**  *** ** ******************

115. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH937475 (Streptococcus phage CHPC931, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

116. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MF417967 (Uncultured Caudovirales phage clone 3S_16, partial genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
caatccaatccgccacaaactgcgggattg	Protospacer
********** ***********.** *.*

117. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to AF158601 (Streptococcus thermophilus bacteriophage SFi18 lysin, gp111, gp183, gp47, gp54, gp71, gp145, gp69, gp40, gp229, gp157, gp233, putative helicase, gp151, gp271, putative primase, gp143, gp106, gp89, gp57, gp51, gp66, gp192, putative DNA binding protein, gp99, and gp235 genes, complete cds) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

118. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705268 (Streptococcus phage P7571, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

119. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705269 (Streptococcus phage P7572, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

120. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705281 (Streptococcus phage P7955, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

121. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to AF115103 (Streptococcus thermophilus bacteriophage Sfi21, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

122. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NC_013645 (Streptococcus phage Abc2, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
ctacccaatccgccacaaactgcggcactg	Protospacer
* *.****** ***********.******

123. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to AF115102 (Streptococcus thermophilus bacteriophage Sfi19, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

124. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to FJ226752 (Streptococcus phage ALQ13.2, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

125. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NC_002214 (Streptococcus thermophilus bacteriophage Sfi11, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

126. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705272 (Streptococcus phage P7601, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

127. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY705271 (Streptococcus phage P7574, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

128. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH937505 (Streptococcus phage CHPC1109, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

129. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH937469 (Streptococcus phage CHPC919, complete genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

130. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH937491 (Streptococcus phage CHPC1037, partial genome) position: , mismatch: 5, identity: 0.833

caatccaatcagccacaaactgtggcactt	CRISPR spacer
cataccaatcagccacatattgtggcacta	Protospacer
**  ************* *.*********

131. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NC_018685 (Bacillus thuringiensis MC28 plasmid pMC95, complete sequence) position: , mismatch: 6, identity: 0.8

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
aaaggaatgttagaagaattaaaaaatagt	Protospacer
.* ***.******************. **

132. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448890 (Streptococcus phage Javan264, complete genome) position: , mismatch: 6, identity: 0.8

agagttactgttgagggtagtccttgaatg	CRISPR spacer
agtgttactgttgagggtagaccgttgata	Protospacer
** ***************** ** * .**.

133. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448896 (Streptococcus phage Javan278, complete genome) position: , mismatch: 6, identity: 0.8

caatccaatcagccacaaactgtggcactt	CRISPR spacer
caatccaatcggccacaaactgcggaatga	Protospacer
**********.***********.** *.

134. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448757 (Streptococcus phage Javan427, complete genome) position: , mismatch: 6, identity: 0.8

caatccaatcagccacaaactgtggcactt	CRISPR spacer
caatccattcagccacaaacttcttaactt	Protospacer
******* ************* .   ****

135. spacer 1.7|42911|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to KY065466 (Streptococcus phage IPP25, complete genome) position: , mismatch: 6, identity: 0.8

acgtctaaaatattatcaaacatagggttg	CRISPR spacer
ccgtctaaaatattattaagcatagctttt	Protospacer
 ***************.**.*****  **

136. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LR215001 (Mycoplasma conjunctivae strain NCTC10147 plasmid 5) position: , mismatch: 6, identity: 0.8

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
ataattaaaactatgctagaaaatcaaatt	Protospacer
*.** . * *********.***********

137. spacer 1.16|43505|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 6, identity: 0.8

ttaggtagactttttttgtttcatctgtca	CRISPR spacer
ttaggtagactttttatgttttttccttaa	Protospacer
*************** *****. **. * *

138. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NZ_CP034168 (Enterococcus avium strain 352 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
aatgcagtattagaagaattaaaaaccaat	Protospacer
.*** ***.****************  *.

139. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
ggcgctttgttagaagagttaaaaacaaga	Protospacer
*..*   **********.******* ****

140. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
ggcgctttgttagaagagttaaaaacaaga	Protospacer
*..*   **********.******* ****

141. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
ggcgctttgttagaagagttaaaaacaaga	Protospacer
*..*   **********.******* ****

142. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
ggcgctttgttagaagagttaaaaacaaga	Protospacer
*..*   **********.******* ****

143. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
ggcgctttgttagaagagttaaaaacaaga	Protospacer
*..*   **********.******* ****

144. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
ggcgctttgttagaagagttaaaaacaaga	Protospacer
*..*   **********.******* ****

145. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NC_015417 (Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
gaacgagtattagaagaattaaaaaaggaa	Protospacer
**  ****.****************....*

146. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
ggcgctttgttagaagagttaaaaacaaga	Protospacer
*..*   **********.******* ****

147. spacer 1.3|42647|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to MN399336 (Edwardsiella phage vB_EtaM_ET-ABTNL-9, complete genome) position: , mismatch: 7, identity: 0.767

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
tcacttgtgtactatcttcagaaaacttac	Protospacer
********* * ***********.*.  *

148. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP006727 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence) position: , mismatch: 7, identity: 0.767

caatccaatcagccacaaactgtggcactt	CRISPR spacer
gcttcgcatcagccacaatctttggcactt	Protospacer
   **  *********** ** ********

149. spacer 1.5|42779|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK448885 (Streptococcus phage Javan252, complete genome) position: , mismatch: 7, identity: 0.767

caatccaatcagccacaaactgtggcactt	CRISPR spacer
caatccaatccgccacaaacttcggaatag	Protospacer
********** ********** .** *.

150. spacer 1.6|42845|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MN602266 (Bacteriophage DSS3_VP1, complete genome) position: , mismatch: 7, identity: 0.767

tagtatctcaaataaaattcaacttcactt	CRISPR spacer
ttgtttctcaaatgaaattcaacttgaaag	Protospacer
* ** ********.*********** *

151. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP046711 (Nostoc sp. ATCC 53789 plasmid pNsp_h, complete sequence) position: , mismatch: 7, identity: 0.767

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
acaagctatactattataaaaaaataggtc	Protospacer
**************  ******* .*..*.

152. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP044508 (Chryseobacterium sp. strain SNU WT7 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

--acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
taatagac--tactatactaaaaaatcaaata	Protospacer
  *.*..*  ******.**************

153. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NC_007410 (Trichormus variabilis ATCC 29413 plasmid A, complete sequence) position: , mismatch: 7, identity: 0.767

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
ttaattcatcctttgctaaaaaatcaaatt	Protospacer
 .** ..** ** *****************

154. spacer 1.13|43307|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP047243 (Trichormus variabilis 0441 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

acaagctatactatgctaaaaaatcaaatt	CRISPR spacer
ttaattcatcctttgctaaaaaatcaaatt	Protospacer
 .** ..** ** *****************

155. spacer 1.15|43439|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 7, identity: 0.767

attggaacattatgaagccgatgatatcat	CRISPR spacer
agttgaacattgtgaagcagatgatattgc	Protospacer
* * *******.****** ********...

156. spacer 1.15|43439|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 7, identity: 0.767

attggaacattatgaagccgatgatatcat	CRISPR spacer
agttgaacattgtgaagcagatgatattgc	Protospacer
* * *******.****** ********...

157. spacer 1.15|43439|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 7, identity: 0.767

attggaacattatgaagccgatgatatcat	CRISPR spacer
agttgaacattgtgaagcagatgatattgc	Protospacer
* * *******.****** ********...

158. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NC_018878 (Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
aatggagtgttagatgaatttaaactacag	Protospacer
.************* ***** ***  * ..

159. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaaa	Protospacer
. *.. .*************.*******.*

160. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaaa	Protospacer
. *.. .*************.*******.*

161. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaaa	Protospacer
. *.. .*************.*******.*

162. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaaa	Protospacer
. *.. .*************.*******.*

163. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaaa	Protospacer
. *.. .*************.*******.*

164. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaaa	Protospacer
. *.. .*************.*******.*

165. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaaa	Protospacer
. *.. .*************.*******.*

166. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaaa	Protospacer
. *.. .*************.*******.*

167. spacer 1.3|42647|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NZ_MF925335 (Edwardsiella tarda strain 150611-1 plasmid p150611 1B-1, complete sequence) position: , mismatch: 8, identity: 0.733

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
cattttgtgaaatatcttcagatgaaagtc	Protospacer
.  .****************** ** **

168. spacer 1.3|42647|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NC_011668 (Shewanella baltica OS223 plasmid pS22302, complete sequence) position: , mismatch: 8, identity: 0.733

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
tggcttgtgcaatatcttcagaagtcgaat	Protospacer
* .****** ************** ...*

169. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NC_014260 (Enterobacteria phage IME08, complete genome) position: , mismatch: 8, identity: 0.733

agagttactgttgagggtagtccttgaatg	CRISPR spacer
cccttcactgtttagggtagttcttgaatc	Protospacer
    *.****** ********.*******

170. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MN850621 (Escherichia phage dhabil, complete genome) position: , mismatch: 8, identity: 0.733

agagttactgttgagggtagtccttgaatg	CRISPR spacer
cccttcactgtttagggtagttcttgaatc	Protospacer
    *.****** ********.*******

171. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MN850609 (Escherichia phage dhaeg, complete genome) position: , mismatch: 8, identity: 0.733

agagttactgttgagggtagtccttgaatg	CRISPR spacer
cccttcactgtttagggtagttcttgaatc	Protospacer
    *.****** ********.*******

172. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to HM071924 (Enterobacteria phage IME08, complete sequence) position: , mismatch: 8, identity: 0.733

agagttactgttgagggtagtccttgaatg	CRISPR spacer
cccttcactgtttagggtagttcttgaatc	Protospacer
    *.****** ********.*******

173. spacer 1.4|42713|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MH051917 (Enterobacteria phage vB_EcoM_IME341, complete genome) position: , mismatch: 8, identity: 0.733

agagttactgttgagggtagtccttgaatg	CRISPR spacer
cccttcactgtttagggtagttcttgaatc	Protospacer
    *.****** ********.*******

174. spacer 1.7|42911|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP017461 (Staphylococcus nepalensis strain JS1 plasmid pSNJS101, complete sequence) position: , mismatch: 8, identity: 0.733

acgtctaaaatattatcaaacatagggttg	CRISPR spacer
ggtactaaaatatcatcaaacataggtacg	Protospacer
.   *********.************  .*

175. spacer 1.7|42911|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 8, identity: 0.733

acgtctaaaatattatcaaacatagggttg	CRISPR spacer
ctgagtgaaatattatcgaacatagggtat	Protospacer
 .*  *.**********.**********

176. spacer 1.9|43043|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MG592660 (Vibrio phage 1.293.O._10N.261.52.E1, partial genome) position: , mismatch: 8, identity: 0.733

attaagtcatcaaggctgtttgtttcttgt	CRISPR spacer
cgtaagtcatctaggctgattgtttggcct	Protospacer
  ********* ****** ******  . *

177. spacer 1.14|43373|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MN018232 (Synechococcus phage S-B43, complete genome) position: , mismatch: 8, identity: 0.733

caacaagttccagagaatgaaacaggtcaa	CRISPR spacer
aaataaattccagagaatgaaacattctca	Protospacer
 **.**.*****************  .. *

178. spacer 1.14|43373|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK799832 (Synechococcus phage S-B05, complete genome) position: , mismatch: 8, identity: 0.733

caacaagttccagagaatgaaacaggtcaa	CRISPR spacer
aaataaattccagagaatgaaacattctca	Protospacer
 **.**.*****************  .. *

179. spacer 1.14|43373|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MN693091 (Marine virus AFVG_25M527, complete genome) position: , mismatch: 8, identity: 0.733

caacaagttccagagaatgaaacaggtcaa	CRISPR spacer
tgctacgttccagaggatgaaacaggtgat	Protospacer
.. .* *********.*********** *

180. spacer 1.14|43373|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK016663 (Synechococcus phage S-H68, complete genome) position: , mismatch: 8, identity: 0.733

caacaagttccagagaatgaaacaggtcaa	CRISPR spacer
aaataaattccagagaatgaaacattctca	Protospacer
 **.**.*****************  .. *

181. spacer 1.15|43439|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NC_014825 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence) position: , mismatch: 8, identity: 0.733

attggaacattatgaagccgatgatatcat	CRISPR spacer
tgcggaagataatgaagccgatgataatac	Protospacer
  .**** ** *************** .*.

182. spacer 1.16|43505|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP045270 (Bacillus megaterium strain FDU301 plasmid pFDU301H, complete sequence) position: , mismatch: 8, identity: 0.733

ttaggtagactttttttgtttcatctgtca	CRISPR spacer
agaggtagactttttctgtttcatgaatgg	Protospacer
  *************.********  .* .

183. spacer 1.16|43505|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to MK449000 (Streptococcus phage Javan64, complete genome) position: , mismatch: 8, identity: 0.733

---ttaggtagactttttttgtttcatctgtca	CRISPR spacer
aacccacat---ctttttttgtttcatctttca	Protospacer
   ..* .*   ***************** ***

184. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 9, identity: 0.7

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaag	Protospacer
. *.. .*************.*******..

185. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 9, identity: 0.7

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaag	Protospacer
. *.. .*************.*******..

186. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 9, identity: 0.7

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaag	Protospacer
. *.. .*************.*******..

187. spacer 1.16|43505|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NZ_MG205641 (Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence) position: , mismatch: 9, identity: 0.7

ttaggtagactttttttgtttcatctgtca	CRISPR spacer
aactgtatactttttctgtttcatctgaag	Protospacer
    *** *******.***********  .

188. spacer 1.16|43505|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NZ_MG205643 (Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence) position: , mismatch: 9, identity: 0.7

ttaggtagactttttttgtttcatctgtca	CRISPR spacer
aactgtatactttttctgtttcatctgaag	Protospacer
    *** *******.***********  .

189. spacer 1.16|43505|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to NZ_MG205642 (Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence) position: , mismatch: 9, identity: 0.7

ttaggtagactttttttgtttcatctgtca	CRISPR spacer
aactgtatactttttctgtttcatctgaag	Protospacer
    *** *******.***********  .

190. spacer 1.2|42581|30|NZ_ALRG01000016|CRT,CRISPRCasFinder matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 10, identity: 0.667

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
atgagagtcttagaagaattaaaaattctt	Protospacer
.  .**** ****************

191. spacer 1.15|43439|30|NZ_ALRG01000016|CRT,CRISPRCasFinder,PILER-CR matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 10, identity: 0.667

attggaacattatgaagccgatgatatcat	CRISPR spacer
ccgcgaacatcatgaagccgatgatcaggg	Protospacer
 .  ******.**************   .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

15. NZ_ALRG01000045

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

790 : 43773

Streptococcus_phage(97.22%)

tail,holin,capsid,head,protease,portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000459854.1\|790_2659_+	XRE family transcriptional regulator	E4ZFJ9	Streptococcus_phage	5.2e-303	81.0
WP_001122250.1\|3067_3637_+	hypothetical protein	A0A1B0RXB3	Streptococcus_phage	1.1e-86	81.0
WP_000905646.1\|3675_5631_-	DNA polymerase	D0R0B0	Streptococcus_phage	0.0e+00	84.0
WP_000208946.1\|5861_6425_-	DUF2815 family protein	A0A1B0RXA9	Streptococcus_phage	3.3e-91	93.4
WP_001873559.1\|6429_7551_-	DUF2800 domain-containing protein	A0A1X9I6D8	Streptococcus_phage	2.6e-196	87.9
WP_000041407.1\|7543_7867_-	hypothetical protein	A0A1B0RXB7	Streptococcus_phage	2.0e-32	71.2
WP_001160920.1\|8263_10549_+	hypothetical protein	E4ZFK6	Streptococcus_phage	0.0e+00	79.1
WP_001208492.1\|10832_11114_+	VRR-NUC domain-containing protein	M1PFY8	Streptococcus_phage	7.9e-38	79.6
WP_000768926.1\|11094_12471_+	DEAD/DEAH box helicase	A0A1X9I6B0	Streptococcus_phage	5.2e-231	86.2
WP_000356300.1\|12463_12961_+	hypothetical protein	A0A1B0RXB9	Streptococcus_phage	4.3e-63	75.0
WP_000640707.1\|13353_14391_+	methionine adenosyltransferase	E4ZFL0	Streptococcus_phage	2.2e-170	84.9
WP_001138031.1\|14392_14758_+	HNH endonuclease	A0A1B0RXJ3	Streptococcus_phage	6.6e-61	86.0
WP_000999418.1\|15045_15501_+	hypothetical protein	A0A1B0RXC6	Streptococcus_phage	5.4e-44	51.0
WP_000211620.1\|15472_16729_+	DNA modification methylase	A0A1B0RXE5	Streptococcus_phage	7.5e-221	90.7
WP_000176350.1\|16725_17979_+	DNA (cytosine-5-)-methyltransferase	M1NSK8	Streptococcus_phage	2.5e-232	93.8
WP_000164539.1\|18056_18311_+	hypothetical protein	NA	NA	NA	NA
WP_000342209.1\|18321_18771_+	DUF4314 domain-containing protein	E4ZFL7	Streptococcus_phage	2.1e-16	65.2
WP_000220985.1\|19277_20870_+\|terminase	terminase large subunit	A0A1B0RXJ8	Streptococcus_phage	1.5e-306	95.5
WP_001140392.1\|20925_21228_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_000666489.1\|21227_21533_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_000424367.1\|21549_21822_+	hypothetical protein	E4ZFM1	Streptococcus_phage	4.1e-07	78.0
WP_000523688.1\|21902_23192_+\|portal	phage portal protein	E4ZFM3	Streptococcus_phage	2.0e-229	91.0
WP_001225236.1\|23184_23883_+\|protease	Clp protease ClpP	A0A1B0RXE1	Streptococcus_phage	1.4e-104	82.8
WP_000040501.1\|23896_25105_+\|capsid	phage major capsid protein	E4ZFM5	Streptococcus_phage	7.5e-210	91.0
WP_000988605.1\|25101_25359_+\|head,tail	phage gp6-like head-tail connector protein	D0R0D7	Streptococcus_phage	4.3e-30	78.8
WP_000684962.1\|25358_25697_+\|head,tail	head-tail adaptor protein	A0A1B0RXE4	Streptococcus_phage	1.2e-37	69.6
WP_000161241.1\|25689_26058_+	HK97 gp10 family phage protein	Q6DMT7	Streptococcus_phage	9.1e-34	62.1
WP_001209971.1\|26066_26393_+	hypothetical protein	M1Q1Z4	Streptococcus_phage	5.4e-38	67.6
WP_000818565.1\|26395_26965_+	hypothetical protein	E4ZFM9	Streptococcus_phage	5.1e-100	97.3
WP_001249616.1\|26976_27396_+	hypothetical protein	A0A1X9I691	Streptococcus_phage	2.8e-55	75.5
WP_000918343.1\|27690_30810_+	hypothetical protein	Q6DMT2	Streptococcus_phage	3.5e-259	78.0
WP_000589863.1\|30806_31532_+	hypothetical protein	Q6DMT1	Streptococcus_phage	2.1e-82	58.8
WP_000966169.1\|31531_34447_+	carbamoylsarcosine amidase	Q6DMT0	Streptococcus_phage	0.0e+00	64.6
WP_000796404.1\|34459_36316_+	hypothetical protein	Q6DMS9	Streptococcus_phage	2.7e-259	73.3
WP_000661349.1\|36333_36732_+\|holin	phage holin family protein	D0R0E9	Streptococcus_phage	5.1e-38	60.8
WP_000143479.1\|36733_38140_+	LysM peptidoglycan-binding domain-containing protein	A0A1B0RXL4	Streptococcus_phage	3.7e-107	63.4
WP_000123549.1\|38275_38383_+\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_000290968.1\|38920_40162_+	recombinase family protein	A0A1X9I6J1	Streptococcus_phage	1.2e-170	69.5
WP_079254335.1\|40106_41411_+	recombinase family protein	E4ZFN9	Streptococcus_phage	1.4e-198	80.0
WP_000504421.1\|41480_42254_+	hypothetical protein	NA	NA	NA	NA
WP_000247955.1\|42267_43773_+	protein kinase	A0A2P1EMI9	Moumouvirus	3.4e-10	24.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

16. NZ_ALRG01000042

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr_ID: NZ_ALRG01000042.1|WP_000384271.1|20343_20670_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_ALRG01000042.1|WP_000384271.1|20343_20670_-|hypothetical-protein

20343_20670_-

108 aa aa

AcrIIA21

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3639\|WP_000384271.1\|AcrIIA21\|II-A\|Verified\|Streptococcus	1.0	1	1.0