CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_ALTY01000036	Streptococcus agalactiae GB00679 ctg7180000005714, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	0
NZ_ALTY01000003	Streptococcus agalactiae GB00679 ctg7180000005681, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000030	Streptococcus agalactiae GB00679 ctg7180000005708, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000037	Streptococcus agalactiae GB00679 ctg7180000005715, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000031	Streptococcus agalactiae GB00679 ctg7180000005709, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000022	Streptococcus agalactiae GB00679 ctg7180000005700, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_ALTY01000027	Streptococcus agalactiae GB00679 ctg7180000005705, whole genome shotgun sequence	0 crisprs	csa3	0	0	0
NZ_ALTY01000039	Streptococcus agalactiae GB00679 ctg7180000005717, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000017	Streptococcus agalactiae GB00679 ctg7180000005695, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000035	Streptococcus agalactiae GB00679 ctg7180000005713, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000006	Streptococcus agalactiae GB00679 ctg7180000005684, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000015	Streptococcus agalactiae GB00679 ctg7180000005693, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000014	Streptococcus agalactiae GB00679 ctg7180000005692, whole genome shotgun sequence	0 crisprs	cas3	0	0	0
NZ_ALTY01000012	Streptococcus agalactiae GB00679 ctg7180000005690, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000026	Streptococcus agalactiae GB00679 ctg7180000005704, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_ALTY01000008	Streptococcus agalactiae GB00679 ctg7180000005686, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000023	Streptococcus agalactiae GB00679 ctg7180000005701, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000040	Streptococcus agalactiae GB00679 ctg7180000005718, whole genome shotgun sequence	0 crisprs	csm6	0	0	0
NZ_ALTY01000018	Streptococcus agalactiae GB00679 ctg7180000005696, whole genome shotgun sequence	1 crisprs	csn2,cas2,cas1,cas9	6	0	0
NZ_ALTY01000032	Streptococcus agalactiae GB00679 ctg7180000005710, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_ALTY01000011	Streptococcus agalactiae GB00679 ctg7180000005689, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000009	Streptococcus agalactiae GB00679 ctg7180000005687, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000004	Streptococcus agalactiae GB00679 ctg7180000005682, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000028	Streptococcus agalactiae GB00679 ctg7180000005706, whole genome shotgun sequence	0 crisprs	NA	0	2	0
NZ_ALTY01000001	Streptococcus agalactiae GB00679 ctg7180000005679, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000020	Streptococcus agalactiae GB00679 ctg7180000005698, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000016	Streptococcus agalactiae GB00679 ctg7180000005694, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000021	Streptococcus agalactiae GB00679 ctg7180000005699, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000010	Streptococcus agalactiae GB00679 ctg7180000005688, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000024	Streptococcus agalactiae GB00679 ctg7180000005702, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000029	Streptococcus agalactiae GB00679 ctg7180000005707, whole genome shotgun sequence	0 crisprs	DinG	0	0	0
NZ_ALTY01000033	Streptococcus agalactiae GB00679 ctg7180000005711, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000038	Streptococcus agalactiae GB00679 ctg7180000005716, whole genome shotgun sequence	0 crisprs	NA	0	0	1
NZ_ALTY01000002	Streptococcus agalactiae GB00679 ctg7180000005680, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000007	Streptococcus agalactiae GB00679 ctg7180000005685, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000005	Streptococcus agalactiae GB00679 ctg7180000005683, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000019	Streptococcus agalactiae GB00679 ctg7180000005697, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000013	Streptococcus agalactiae GB00679 ctg7180000005691, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000025	Streptococcus agalactiae GB00679 ctg7180000005703, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_ALTY01000034	Streptococcus agalactiae GB00679 ctg7180000005712, whole genome shotgun sequence	0 crisprs	cas3	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr_ID: NZ_ALTY01000038.1|WP_000384271.1|65514_65841_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_ALTY01000038.1|WP_000384271.1|65514_65841_+|hypothetical-protein

65514_65841_+

108 aa aa

AcrIIA21

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3639\|WP_000384271.1\|AcrIIA21\|II-A\|Verified\|Streptococcus	1.0	1	1.0

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

66625 : 75618

Bacillus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000998735.1\|66625_67222_+	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	1.1e-15	29.4
WP_000575545.1\|67313_68570_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	7.8e-93	51.7
WP_000968655.1\|68574_69552_+	nucleoid-associated protein	NA	NA	NA	NA
WP_000472259.1\|69553_70156_+	lysozyme family protein	A0A223LKM8	Bacillus_phage	1.1e-20	40.1
WP_000826946.1\|70167_71889_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.8e-40	26.7
WP_000647638.1\|71889_73623_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.1e-50	31.0
WP_000746858.1\|73636_73876_+	hypothetical protein	NA	NA	NA	NA
WP_000222551.1\|73899_75618_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	5.4e-278	84.6

DBSCAN-SWA_2

128119 : 137502

uncultured_Caudovirales_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000201088.1\|128119_128881_+	ribonuclease HII	D2TEQ2	Emiliania_huxleyi_virus	1.5e-25	40.7
WP_000136509.1\|128901_129450_+	sugar O-acetyltransferase	NA	NA	NA	NA
WP_000735588.1\|129687_130650_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4IY97	uncultured_Caudovirales_phage	3.3e-83	50.3
WP_000588576.1\|130646_131621_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4IY97	uncultured_Caudovirales_phage	3.6e-05	21.2
WP_000614752.1\|131617_132379_+	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	1.7e-18	28.6
WP_000162774.1\|132440_133469_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001015250.1\|133606_134449_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	8.5e-27	35.8
WP_000246613.1\|134543_136664_+	type I DNA topoisomerase	E3T4K4	Cafeteria_roenbergensis_virus	8.2e-103	37.7
WP_000120355.1\|136800_137502_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.2e-35	39.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_ALTY01000026

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

58508 : 69242

Streptococcus_phage(84.62%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001185985.1\|58508_59273_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.6e-14	24.8
WP_000178144.1\|59272_59983_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.1e-14	26.5
WP_001144246.1\|60001_60661_+	CBS domain-containing protein	M1NSC5	Streptococcus_phage	4.7e-65	56.5
WP_000715594.1\|60749_61385_+	dTMP kinase	M1PSC7	Streptococcus_phage	1.4e-66	60.1
WP_000364568.1\|61404_62268_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.5e-74	50.0
WP_000358198.1\|62298_62625_+	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	3.2e-30	61.1
WP_001868299.1\|62630_63494_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.7e-110	70.7
WP_075316619.1\|63469_63631_-	hypothetical protein	NA	NA	NA	NA
WP_001868293.1\|63615_63720_+	hypothetical protein	NA	NA	NA	NA
WP_000603275.1\|63763_64399_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_000158399.1\|64531_65623_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	1.7e-165	78.0
WP_001167085.1\|65690_66239_+	acetyltransferase	M1PSC3	Streptococcus_phage	1.1e-54	58.4
WP_000232152.1\|66301_67483_+	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	1.1e-168	75.3
WP_000966772.1\|67539_68016_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	7.1e-39	50.9
WP_000287943.1\|68017_68374_+	arsenate reductase family protein	M1PLC0	Streptococcus_phage	5.2e-42	72.6
WP_000767485.1\|68414_69242_-	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	5.1e-125	78.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_ALTY01000032

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

23483 : 35548

Synechococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000783419.1\|23483_24788_-	LysM peptidoglycan-binding domain-containing protein	A0A0E3XB61	Gordonia_phage	1.2e-11	34.2
WP_001045908.1\|24934_25834_-	peptidoglycan DD-metalloendopeptidase family protein	A0A221J6U0	Arthrobacter_phage	4.1e-19	45.9
WP_000166549.1\|26026_27574_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	3.7e-44	52.4
WP_000780022.1\|27593_28346_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000685109.1\|28368_28917_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-25	35.6
WP_001291328.1\|29084_30107_-	phosphoribosylformylglycinamidine cyclo-ligase	R9TMC7	Synechococcus_phage	1.1e-63	42.7
WP_000220676.1\|30134_31589_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.7e-54	32.7
WP_001042250.1\|31822_35548_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.9e-38	25.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_ALTY01000034

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

26679 : 31723

Streptococcus_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000038826.1\|26679_27057_-	DUF1492 domain-containing protein	J7KDQ1	Streptococcus_phage	2.8e-14	40.6
WP_000891152.1\|27190_27679_-	hypothetical protein	A0A1X9I5V2	Streptococcus_phage	3.5e-49	59.3
WP_001258765.1\|27751_28309_-	hypothetical protein	A0A1X9I5U4	Streptococcus_phage	2.4e-30	59.8
WP_000694573.1\|28466_28640_-	hypothetical protein	A0A1X9I5U0	Streptococcus_phage	4.3e-10	56.1
WP_001069293.1\|28636_28894_-	hypothetical protein	NA	NA	NA	NA
WP_000656430.1\|29186_30581_-	hypothetical protein	A0A1W6JQD6	Staphylococcus_phage	5.9e-49	38.4
WP_001029296.1\|30592_31450_-	hypothetical protein	A0A1X9I6L2	Streptococcus_phage	3.0e-120	72.9
WP_001100460.1\|31450_31723_-	hypothetical protein	A0A1X9I5U9	Streptococcus_phage	1.8e-18	56.8

DBSCAN-SWA_2

50806 : 57980

Staphylococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001042665.1\|50806_51481_-	transglycosylase SLT domain-containing protein	Q4Z8Z7	Staphylococcus_phage	8.9e-27	54.3
WP_000029069.1\|51586_52126_-	LysM peptidoglycan-binding domain-containing protein	A0A249XZV3	Enterococcus_phage	1.3e-17	46.4
WP_000359358.1\|52341_53136_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_000510606.1\|53128_53971_-	energy-coupling factor transporter ATPase	W6JKT0	Anomala_cuprea_entomopoxvirus	2.5e-18	25.5
WP_000181758.1\|53946_54786_-	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	3.5e-20	30.0
WP_000239225.1\|54785_55328_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_000217762.1\|55450_56734_-	insulinase family protein	A0A2K9V7S4	Bandra_megavirus	1.6e-21	33.3
WP_000706196.1\|56735_57980_-	insulinase family protein	A0A1X9I714	Streptococcus_phage	1.1e-86	41.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_ALTY01000018

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CRISPR-Cas detection and classification

Crispr_ID: NZ_ALTY01000018_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_ALTY01000018_1

43765-44394

TypeII

II-A

Consensus_repeat	Method
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRISPRCasFinder

9 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_ALTY01000018_1

>merge|NZ_ALTY01000018|1|43765-44394|CRT,PILER-CR,CRISPRCasFinder
TGATGTCCTAGCATAATAACAGCACAGCTCTAAAACTATCCATCTCGGTGAGATGAGAATTAGCTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGGGTTTAGGGGGCACAAACAGGCTCATTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGGCTTAAGCGTTCCCTTAAAAACTTCTTGGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACAAGGAAAAGCTAGTGATGAGGAGCTTGCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATCGGGTCTATATGCCCCCTAAAATCAATTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGTCTAATCGCCTATTATTATCCAGATAAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTGAAAGCGAATTGACGATAAGCGAAAATGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCATTACTTGTATTTATAAATGATTTAGCAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATAGACCCATCACGAATCGAACGTGATTAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_ALTY01000018|1|1|43765-44394|CRT
TGATGTCCTAGCATAATAACAGCACAGCTCTAAAAC	TATCCATCTCGGTGAGATGAGAATTAGCTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGGGTTTAGGGGGCACAAACAGGCTCATTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GGCTTAAGCGTTCCCTTAAAAACTTCTTGG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACAAGGAAAAGCTAGTGATGAGGAGCTTGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATCGGGTCTATATGCCCCCTAAAATCAATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGTCTAATCGCCTATTATTATCCAGATAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGAAAGCGAATTGACGATAAGCGAAAATGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCATTACTTGTATTTATAAATGATTTAGCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATAGACCCATCACGAATCGAACGTGATTAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_ALTY01000018|1|1|43831-44394|PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGGGTTTAGGGGGCACAAACAGGCTCATTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GGCTTAAGCGTTCCCTTAAAAACTTCTTGG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACAAGGAAAAGCTAGTGATGAGGAGCTTGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATCGGGTCTATATGCCCCCTAAAATCAATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGTCTAATCGCCTATTATTATCCAGATAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGAAAGCGAATTGACGATAAGCGAAAATGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCATTACTTGTATTTATAAATGATTTAGCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATAGACCCATCACGAATCGAACGTGATTAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_ALTY01000018|1|1|43831-44394|CRISPRCasFinder
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGGGTTTAGGGGGCACAAACAGGCTCATTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GGCTTAAGCGTTCCCTTAAAAACTTCTTGG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACAAGGAAAAGCTAGTGATGAGGAGCTTGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATCGGGTCTATATGCCCCCTAAAATCAATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGTCTAATCGCCTATTATTATCCAGATAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGAAAGCGAATTGACGATAAGCGAAAATGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCATTACTTGTATTTATAAATGATTTAGCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATAGACCCATCACGAATCGAACGTGATTAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_ALTY01000018.1\|WP_000146565.1\|31470_32109_+\|CatB-related-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
NZ_ALTY01000018.1\|WP_001019133.1\|40822_42655_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_ALTY01000018.1\|WP_000590706.1\|44494_45160_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	pfam09711_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_ALTY01000018.1\|WP_000168898.1\|33332_36125_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|223550
NZ_ALTY01000018.1\|WP_000665410.1\|36276_36711_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NZ_ALTY01000018.1\|WP_011058334.1\|43339_43510_-\|hypothetical-protein	unknown	unknown	unknown
NZ_ALTY01000018.1\|WP_000122194.1\|45146_45488_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_ALTY01000018.1\|WP_000653357.1\|50855_51512_-\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884
NZ_ALTY01000018.1\|WP_000929489.1\|45484_46354_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_ALTY01000018.1\|WP_000914664.1\|53013_54144_-\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NZ_ALTY01000018.1\|WP_000323544.1\|51501_52272_-\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_ALTY01000018.1\|WP_000523795.1\|52272_53010_-\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
NZ_ALTY01000018.1\|WP_001241816.1\|54235_54616_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131381
NZ_ALTY01000018.1\|WP_000065321.1\|32229_33333_-\|DUF2974-domain-containing-protein	unknown	unknown	gnl\|CDD\|371412
NZ_ALTY01000018.1\|WP_001040081.1\|46355_50468_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NZ_ALTY01000018.1\|WP_000180007.1\|37183_37843_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224336
NZ_ALTY01000018.1\|WP_000438314.1\|42790_43207_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_ALTY01000018.1\|WP_000678298.1\|37942_40576_-\|pneumococcal-type-histidine-triad-protein	unknown	unknown	gnl\|CDD\|380193
NZ_ALTY01000018.1\|WP_000159234.1\|54640_55012_-\|YbgA-family-protein	unknown	unknown	gnl\|CDD\|377982
NZ_ALTY01000018.1\|WP_000621142.1\|36710_37175_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
NZ_ALTY01000018.1\|WP_000146565.1\|31470_32109_+\|CatB-related-O-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	6.8383e-72
NZ_ALTY01000018.1\|WP_001019133.1\|40822_42655_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_ALTY01000018.1\|WP_000590706.1\|44494_45160_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.61399e-122
NZ_ALTY01000018.1\|WP_000168898.1\|33332_36125_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NZ_ALTY01000018.1\|WP_000665410.1\|36276_36711_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	6.40832e-86
NZ_ALTY01000018.1\|WP_000122194.1\|45146_45488_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.38084e-52
NZ_ALTY01000018.1\|WP_000653357.1\|50855_51512_-\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	9.75792e-52
NZ_ALTY01000018.1\|WP_000929489.1\|45484_46354_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.54315e-139
NZ_ALTY01000018.1\|WP_000914664.1\|53013_54144_-\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NZ_ALTY01000018.1\|WP_000323544.1\|51501_52272_-\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.19143e-132
NZ_ALTY01000018.1\|WP_000523795.1\|52272_53010_-\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	3.68196e-111
NZ_ALTY01000018.1\|WP_001241816.1\|54235_54616_-\|hypothetical-protein	gnl\|CDD\|131381	TIGR02328, TIGR02328, conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown. [Hypothetical proteins, Conserved].	6.45558e-80
NZ_ALTY01000018.1\|WP_000065321.1\|32229_33333_-\|DUF2974-domain-containing-protein	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	1.82724e-105
NZ_ALTY01000018.1\|WP_001040081.1\|46355_50468_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	0
NZ_ALTY01000018.1\|WP_000180007.1\|37183_37843_-\|HD-domain-containing-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	2.66997e-33
NZ_ALTY01000018.1\|WP_000438314.1\|42790_43207_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	4.64422e-78
NZ_ALTY01000018.1\|WP_000678298.1\|37942_40576_-\|pneumococcal-type-histidine-triad-protein	gnl\|CDD\|380193	NF033189, internalin_A, class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.	9.80578e-22
NZ_ALTY01000018.1\|WP_000159234.1\|54640_55012_-\|YbgA-family-protein	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	6.08694e-28
NZ_ALTY01000018.1\|WP_000621142.1\|36710_37175_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.91796e-19

>NZ_ALTY01000018.1|WP_011058334.1|43339_43510_-|hypothetical-protein
MKGYNSNLMVKGLGCSTLYLIISLTALVLLVIAGVFFVINTCKLTRKAVENLSIIN
>NZ_ALTY01000018.1|WP_000438314.1|42790_43207_-|nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
>NZ_ALTY01000018.1|WP_001019133.1|40822_42655_-|elongation-factor-4
MNIEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRAEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGEVDAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTITLANNPAIEPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTRVDSIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKLIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDDKK
>NZ_ALTY01000018.1|WP_000678298.1|37942_40576_-|pneumococcal-type-histidine-triad-protein
MKGQKIIALAGLVLSCHFALTACHTQEHKNSHHIKTKQVAKKKANKKKVSVKESHKKRKGVAGVDFPTDDGFLLTKDSKILSHTDSGIVVAHGNHSHFIFYSDLKGSKFSYLIPNANTKTNKNQAVRNFKAGAVAVNTLNDGYVFNPADIVSEDANGYVVRHGDHFHYIPKASLSQQKQVQASRAVSRLGNQSNSHYRVNSSKIAGLHYPTSNGFLFNGRGIKGTTPTGILVEHHNHLHFISFADLRKGGWGSIADRYQPQKKADSKKQSPSSKKPRTENTLPKDIKDKLAYLARELHLDISRIRVLKTLNGEIGFEYPHDDHTHVIMAKDIDLSKPIPNPHHDDEDHHKGHHHDESDHKHEEHEHTKSNKLSDEDQKKLIYLAEKLGLNPNQIEVLTSEDGSIIFKYPHDDHSHTIASKDIEIGKPIPDGHHDHSHAKDKVGMATLKQIGFDDEIIQDILHADAPTPFPSNETNPEKMRQWLATVTKINIGQRTNPFQRFGLSLMPNIEVLGIGFTPINDMTPVLQFKKLKQLWMTNTGITDYSFLDKMPLLEGLDISQNGIKDLSFLTKYKQLSLIAAANNGITSLKPLAELPNLQFLVLSHNNISDLTPLSNLTKLQELHLDHNNVKNLSALSGKKDLKVLDLSNNKSADLSTLKTTSLETLLLNETNTSNLSFLKQNPKVSNLTINNAKLASLDGIEESDEIVKVEAEGNQIKSLVLKNKQGSLKFLNVTNNQLTSLEGVNNYTSLETLSVSKNKLESLDIKTPNKTVTNLDFSHNNVPTSQLKLNEKNIPEAVAKNFPAVVEGSMVGNGSLAEKAAMASKEDKQVSDNTNHQKNTEKSAQANADSKKENPKTHDEHHDHEETDHAHVGHHHH
>NZ_ALTY01000018.1|WP_000180007.1|37183_37843_-|HD-domain-containing-protein
MTMVKREDVILNATENMVHHKLKNDPSGHDWFHIVRVRNLAVELAHKEGANTFICQMAALLHDIIDDKICQDSKQASYELTQWLYSQDLAIAEVEHILDILENISFKAGTGLTMKTLEGQIVQDADRLDAMGAIGIARTMAYSGSKGRLIHDPNLKPRENLTLEEYRNGQDTAIMHFYEKLLKLKDLMNTKQGKMLAQKRHDFLELYLAEFYAEWNGKR
>NZ_ALTY01000018.1|WP_000621142.1|36710_37175_-|GNAT-family-N-acetyltransferase
MIRRAKEKDLPDIAELLKQILMLHHEVRPDIFHTRGSKFSKEQLKEMLIDESKPIFVYESDEGKVVAHLFLQLQEKRDLPRKSFKTLYIDDLCIDEEVRGQQIGQKLMDFARQYAKKHGCYNITLNVWNDNQRAVSFYEKLGFKPQQTQMEEIL
>NZ_ALTY01000018.1|WP_000665410.1|36276_36711_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKETQEELRQRIGHTAYQVTQNSATEHAFTGKYDDFFEEGIYVDIVSGEVLFSSLDKFQSGCGWPAFSKPIENRMVTNHQDHSHGMHRIEVRSRQADSHLGHVFNDGPVDAGGLRYCINSAALDFIPYDQMAKRGYGDYLSLFD
>NZ_ALTY01000018.1|WP_000168898.1|33332_36125_-|cation-transporting-P-type-ATPase
MASTNNVSDTNTRFAKEELEEVFEELGTTQGGLSDEEVAVRQKKYGLNLLSEVKQESIILLFLKNFTSLMAILLWVGGFVAIVSNSLELGLAIWMVNVINGIFSFIQEYRASQATQALEKMLPSYSRVLRKGSEEKILSEQLVPGDIVLIEEGDRISADGRLIKTTDLQVNQSALTGESNPIYKDSNVENDQSKTLIECDNMVFAGTTVSSGSATMVVTAIGMQTQFGQIADLTQGMKSEKSPLQRELDRLTKQISIISITVGIIFFLAATFFVKEPVSKSFIFALGMIVAFIPEGLLPTVTLSLAMAVQRMAKEHALVKKLSSVETLGATSVICSDKTGTLTQNEMTVNHLWQNGKSYQVTGLGYAPEGQILFEGDNICFGNSDRGDLEKLIRFAHLCSNAQVLPPNDDRSTYTVLGDPTEACLNVLLEKSGINIQENRKFAPRLKELPFDSVRKRMTTIHSLGGDEKDKKISITKGAPKEILDLSDYVLSDGKVIPLNKEERNKIQLANDTFAKDGLRVLAVSYCDIEGFSKEQWTQENLEQHMVFIGLIAMSDPPREGVREAIDKCHAASIRIIMVTGDYGLTALSIAKNIGIIRNDDAKVISGLELSEMTDSQLKKELSGEVVFARVAPEQKYRVVTILQEMGEVVAVTGDGVNDAPALKKSDIGVAMGVTGTDVAKESADMILTDDHFASIVHAVEEGRAVYQNIKKFLTYIFNSNTPEAVPSAFFLFSKGFIPLPLTVMQILAVDLGTDMLPALGLGVEPPETDVMNRPPRRLTDRLLDKGLLIKSFLWYGTIESVLAMGGFFWAHYLRYGNFTFFVANGIPYREATTMTLGAIIFSQIGMVMNSRTSYQSIKALSIFGNKLINFGIIMEILAFLVLVYVPLFHNLFNTASLGLSHWLYLISCPFIMIGLDEVRKLFSSRKNKR
>NZ_ALTY01000018.1|WP_000065321.1|32229_33333_-|DUF2974-domain-containing-protein
MSNIITYLKNNSNLTFDELALNDVDILCLNEFGYISFEKLINTTEMKSVLVCELYHEYLQTMAKSYSFMFTSQRHDLCQLMMTSKRFKNLTLSYYRAEISLEFEKQFAAMVFTIPNINYHQVVFRGTDANLIGWKEDFKLTYMREISAHRSAIKYLNTILPYFDKVVLSGHSKGGNLALYAAMFTKPDLKAKIDLIWLIDSPGLQKTLLPTTEYKTTKQKCIRLLPEESIVGMMLYSDIEPLIISSNARGILQHDVTTWEIQEPAILKTGTGLSLKSICFEKTFQQWMAELKSQERKLFFDLLFDSFLSSGVSSLDDFNLASRAKMMKAFHSFRELDDDKKRLFNKSLKLLVTIFWGAYHDNSRETK
>NZ_ALTY01000018.1|WP_000146565.1|31470_32109_+|CatB-related-O-acetyltransferase
MASILKKHLEKRLELKNDPMRTDMSTGASYPKYGFSVGKYTYGYQQFFYEGVNLKEIGAFCSIAQNVTITGLNHPTDHITTNPFIYYKSRGFINEDRADLIDEKKNGKVIIGNDVWIGTNVTILPSVTIGNGAIIGAGSVITKDIPDYAVVAGTPAKIIKYRFSEEEITLLNASQWWNWSDEAIKEHISEFSDKKEFFNTLKSISENKNHKL
>NZ_ALTY01000018.1|WP_000590706.1|44494_45160_-|type-II-A-CRISPR-associated-protein-Csn2
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
>NZ_ALTY01000018.1|WP_000122194.1|45146_45488_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNTANNAMIGRLKVNNPKKGNITLLTVTEKQFARMVYLHGERNTSVANSDSRLVFLGDSYDQD
>NZ_ALTY01000018.1|WP_000929489.1|45484_46354_-|type-II-CRISPR-associated-endonuclease-Cas1
MAGWRTVVVNTHSKLSYKNNHLIFKDSYQTEMIHLSEIDILIMETTDIVLSTMLIKRLVDENILVIFCDDKRLPTAMLMPYYARHDSSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLGECSFFEKSQSIMNLYHDLEPFDPSNREGHAARIYFNTLFGNDFSREQDNPINAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIIYENRQSDFVKMKRELFSMFSETYSYNGKEMYLSNIVSDYTKKVIKSLNSDGNGIPEFRI
>NZ_ALTY01000018.1|WP_001040081.1|46355_50468_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNKPYSIGLDIGTNSVGWSIITDDYKVPAKKMRVLGNTDKEYIKKNLIGALLFDGGNTAADRRLKRTARRRYTRRRNRILYLQEIFAEEMSKVDDSFFHRLEDSFLVEEDKRGSKYPIFATLQEEKDYHEKFSTIYHLRKELADKKEKADLRLIYIALAHIIKFRGHFLIEDDSFDVRNTDISKQYQDFLEIFNTIFENNDLLSQNVDVEAILTDKISKSAKKDRILAQYPNQKSTGIFAEFLKLIVGNQADFKKYFNLEDKTPLQFAKDSYDEDLENLLGQIGDEFADLFSAAKKLYDSVLLSGILTVIDLSTKAPLSASMIQRYDEHREDLKQLKQFVKASLPEKYQEIFADSSKDGYAGYIEGKTNQEAFYKYLSKLLTKQEDSENFLEKIKNEDFLRKQRTFDNGSIPHQVHLTELKAIIRRQSEYYPFLKENQDRIEKILTFRIPYYIGPLAREKSDFAWMTRKTDDSIRPWNFEDLVDKEKSAEAFIHRMTNNDFYLPEEKVLPKHSLIYEKFTVYNELTKVRYKNEQGETYFFDSNIKQEIFDGVFKEHRKVSKKKLLDFLAKEYEEFRIVDVIGLDKENKAFNASLGTYHDLEKILDKDFLDNPDNESILEDIVQTLTLFEDREMIKKRLENYKDLFTESQLKKLYRRHYTGWGRLSAKLINGIRDKESQKTILDYLIDDGRSNRNFMQLINDDGLSFKSIISKAQAGSHSDNLKEVVGELAGSPAIKKGILQSLKIVDELVKVMGYEPEQIVVEMARENQTTNQGRRNSRQRYKLLDDGVKNLASDLNGNILKEYPTDNQALQNERLFLYYLQNGRDMYTGEALDIDNLSQYDIDHIIPQAFIKDDSIDNRVLVSSAKNRGKSDDVPSLEIVKDCKVFWKKLLDAKLMSQRKYDNLTKAERGGLTSDDKARFIQRQLVETRQITKHVARILDERFNNELDSKGRRIRKVKIVTLKSNLVSNFRKEFGFYKIREVNNYHHAHDAYLNAVVAKAILTKYPQLEPEFVYGDYPKYNSYKTRKSATEKLFFYSNIMNFFKTKVTLADGTVVVKDDIEVNNDTGEIVWDKKKHFATVRKVLSYPQNNIVKKTEIQTGGFSKESILAHGNSDKLIPRKTKDIYLDPKKYGGFDSPIVAYSVLVVADIKKGKAQKLKTVTELLGITIMERSRFEKNPSAFLESKGYLNIRADKLIILPKYSLFELENGRRRLLASAGELQKGNELALPTQFMKFLYLASRYNESKGKPEEIEKKQEFVNQHVSYFDDILQLINDFSKRVILADANLEKINKLYQDNKENISVDELANNIINLFTFTSLGAPAAFKFFDKIVDRKRYTSTKEVLNSTLIHQSITGLYETRIDLGKLGED
>NZ_ALTY01000018.1|WP_000653357.1|50855_51512_-|TIGR01906-family-membrane-protein
MKDKLLVVLTWIWIISLATLATIYIAWLIYPIEIQFLKLEKVVYLKAETIYYNFNKLMIYLTHPFISDLNMPSFPSSEDGLKHFADVKYLFTLAHGLFVILTFPVIYFLRRGWKQKSIFLYEGFFKIAIMLPIFIVVCAFLLGFDQFFTLFHEVLFPGDSTWQFNPLTDPVIWILPETFFLHCFIIFLLIYETITIILLIIGRKHLKLRKYKNKMQAL
>NZ_ALTY01000018.1|WP_000323544.1|51501_52272_-|TIGR01457-family-HAD-type-hydrolase
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
>NZ_ALTY01000018.1|WP_000523795.1|52272_53010_-|acyl-ACP-thioesterase
MGLLYRETYEVPFYESDTNHYMKLPQLLALALQISAKQSLKLGIGDDIVFKRYGLVWVVTDYIIDIERLPKHAEKIVIETEAKAHNKLLCYRYFYIYGEDGQKIITISSAFVLMDFKTRKIHPVLDDITSIYQSQRIKKVIRGPKYHPIGDSKVKQYHVRYFDLDMNGHVNNSKYLEWMYDVLDLDFLSSHIPKKIDLKYIKEIQYGTDIKSHWYQDGLVTRHDIIGGDAIHAQARIEWQEKKED
>NZ_ALTY01000018.1|WP_000914664.1|53013_54144_-|oxygen-independent-coproporphyrinogen-III-oxidase
MLKKPTSAYVHIPFCTQICYYCDFSKVFIKNQPVDAYLQALIREFRSYDITELRTLYIGGGTPTSISAVQLDYLLTELSRDLNLNTLEEFTIEANPGDLTVDKIEVLQKSAVNRVSLGVQTFNDKHLKRIGRSHNEAQIYSTIDALKTAGFQNISIDLIYALPGQTMDDVRSNVAKALSLNIPHLSLYSLILEHHTVFMNKMRRGKLHLPTEDLEAEMFEYIISEMERNGFEHYEISNFTKPGFESRHNLMYWDNVEYYGVGAGASGYLDGIRYRNRGPIQHYLKGVSEGNARLSEEVLSKNEMMEEELFLGLRKKEGVSIGKFEQKFGTSFEKRYGQIVQELQSDGLLKENNGFIQMTKKGLFLGDTVAEKFIVE
>NZ_ALTY01000018.1|WP_001241816.1|54235_54616_-|hypothetical-protein
MRLWHQDIIELLPRQQLLGQHRECCALRGNGWGRKHETVDYVFRYSPYRLFAYHQLVMEEMMERGYRVSKEWLIAEYRGMKCPRYDTLNPVDLETPIYPEHNQDYLQECLWNLKAKGIDLPINKIK
>NZ_ALTY01000018.1|WP_000159234.1|54640_55012_-|YbgA-family-protein
MTKEAELLWAKHKYLVLSKSQKIYLDIRQTLKSPNCTVLDVQSLIDQAVLLEESPSQVTNAYMHIWGYFKNKAERQEKEEFLTLLEKYRKTGYQRRKLLAFLKQLLAKYPNSYLQNSSIFEEE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_ALTY01000018_1	1.2\|43867\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	43867-43896	30	NZ_KJ951051	Streptococcus dysgalactiae subsp. equisimilis strain G279 plasmid pG279, complete sequence	1764-1793	0	1.0
NZ_ALTY01000018_1	1.4\|43999\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	43999-44028	30	KY065486	Streptococcus phage IPP46, complete genome	7129-7158	0	1.0
NZ_ALTY01000018_1	1.4\|43999\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	43999-44028	30	FR671411	Streptococcus phage 2167	29060-29089	0	1.0
NZ_ALTY01000018_1	1.5\|44065\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44065-44094	30	MK448742	Streptococcus phage Javan37, complete genome	15382-15411	0	1.0
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	JX409894	Streptococcus phage LYGO9, complete genome	38216-38245	0	1.0
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	MH853356	Streptococcus phage LF2, partial genome	7600-7629	0	1.0
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	MK448837	Streptococcus phage Javan10, complete genome	7942-7971	0	1.0
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	MK448742	Streptococcus phage Javan37, complete genome	8431-8460	0	1.0
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	MK448851	Streptococcus phage Javan14, complete genome	11606-11635	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	JX409894	Streptococcus phage LYGO9, complete genome	31161-31190	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448971	Streptococcus phage Javan52, complete genome	17509-17538	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448829	Streptococcus phage Javan7, complete genome	14358-14387	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448736	Streptococcus phage Javan35, complete genome	14828-14857	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448956	Streptococcus phage Javan48, complete genome	16397-16426	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448781	Streptococcus phage Javan5, complete genome	16850-16879	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448749	Streptococcus phage Javan39, complete genome	16483-16512	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MH853355	Streptococcus phage LF1, complete genome	5215-5244	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448938	Streptococcus phage Javan44, complete genome	14829-14858	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MH853356	Streptococcus phage LF2, partial genome	1515-1544	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448911	Streptococcus phage Javan34, complete genome	14828-14857	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448837	Streptococcus phage Javan10, complete genome	12886-12915	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448742	Streptococcus phage Javan37, complete genome	14664-14693	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MH853358	Streptococcus phage LF4, complete genome	5215-5244	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448851	Streptococcus phage Javan14, complete genome	16770-16799	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448916	Streptococcus phage Javan36, complete genome	14828-14857	0	1.0
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448673	Streptococcus phage Javan119, complete genome	16121-16150	0	1.0
NZ_ALTY01000018_1	1.4\|43999\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	43999-44028	30	KY065465	Streptococcus phage IPP24, complete genome	6277-6306	1	0.967
NZ_ALTY01000018_1	1.5\|44065\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44065-44094	30	MK448837	Streptococcus phage Javan10, complete genome	13592-13621	1	0.967
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	MK449010	Streptococcus phage Javan90, complete genome	8833-8862	1	0.967
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	MK448833	Streptococcus phage Javan87, complete genome	8833-8862	1	0.967
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448796	Streptococcus phage Javan53, complete genome	19246-19275	1	0.967
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448859	Streptococcus phage Javan170, complete genome	17030-17059	1	0.967
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448672	Streptococcus phage Javan117, complete genome	12142-12171	1	0.967
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448686	Streptococcus phage Javan157, complete genome	16294-16323	1	0.967
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448854	Streptococcus phage Javan146, complete genome	17049-17078	1	0.967
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448676	Streptococcus phage Javan131, complete genome	19550-19579	1	0.967
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	MK448688	Streptococcus phage Javan161, complete genome	16983-17012	1	0.967
NZ_ALTY01000018_1	1.5\|44065\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44065-44094	30	MK448829	Streptococcus phage Javan7, complete genome	15064-15093	2	0.933
NZ_ALTY01000018_1	1.5\|44065\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44065-44094	30	MK448736	Streptococcus phage Javan35, complete genome	15546-15575	2	0.933
NZ_ALTY01000018_1	1.5\|44065\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44065-44094	30	MK448781	Streptococcus phage Javan5, complete genome	17568-17597	2	0.933
NZ_ALTY01000018_1	1.5\|44065\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44065-44094	30	MH853355	Streptococcus phage LF1, complete genome	5921-5950	2	0.933
NZ_ALTY01000018_1	1.5\|44065\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44065-44094	30	MK448938	Streptococcus phage Javan44, complete genome	15547-15576	2	0.933
NZ_ALTY01000018_1	1.5\|44065\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44065-44094	30	MK448911	Streptococcus phage Javan34, complete genome	15546-15575	2	0.933
NZ_ALTY01000018_1	1.5\|44065\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44065-44094	30	MH853358	Streptococcus phage LF4, complete genome	5921-5950	2	0.933
NZ_ALTY01000018_1	1.5\|44065\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44065-44094	30	MK448916	Streptococcus phage Javan36, complete genome	15546-15575	2	0.933
NZ_ALTY01000018_1	1.5\|44065\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44065-44094	30	MK448755	Streptococcus phage Javan423, complete genome	15837-15866	3	0.9
NZ_ALTY01000018_1	1.5\|44065\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44065-44094	30	MK448756	Streptococcus phage Javan425, complete genome	15837-15866	3	0.9
NZ_ALTY01000018_1	1.4\|43999\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	43999-44028	30	MK448763	Streptococcus phage Javan451, complete genome	6861-6890	6	0.8
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	NZ_KM521836	Staphylococcus epidermidis strain 12-00322 plasmid p12-00322, complete sequence	11677-11706	6	0.8
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	CP030483	Staphylococcus aureus strain ER03913.3 plasmid unnamed2, complete sequence	31342-31371	6	0.8
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	668902-668931	6	0.8
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	NZ_CP032752	Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 plasmid unnamed1, complete sequence	30229-30258	7	0.767
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	NZ_CP035135	Lactobacillus plantarum strain SRCM103311 plasmid unnamed4	69444-69473	7	0.767
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	MN693208	Marine virus AFVG_25M383, complete genome	16271-16300	7	0.767
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	MN101223	Klebsiella phage KOX10, complete genome	13181-13210	7	0.767
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	MN693725	Marine virus AFVG_250M494, complete genome	42590-42619	7	0.767
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	MN101224	Klebsiella phage KOX11, complete genome	3699-3728	7	0.767
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	KT001919	Klebsiella phage Miro, complete genome	138215-138244	7	0.767
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	HQ918180	Klebsiella phage KP27, complete genome	135038-135067	7	0.767
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	KT001918	Klebsiella phage Matisse, complete genome	138027-138056	7	0.767
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	LT607758	Klebsiella phage PMBT1 genome assembly, complete genome: monopartite	136600-136629	7	0.767
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	KX130727	Escherichia phage phT4A, partial genome	131133-131162	7	0.767
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	KT321315	Enterobacter phage phiEap-3, complete genome	136043-136072	7	0.767
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	MN101221	Klebsiella phage KOX8, complete genome	12515-12544	7	0.767
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	GU295964	Klebsiella phage KP15, complete genome	136387-136416	7	0.767
NZ_ALTY01000018_1	1.6\|44131\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44131-44160	30	MN043730	Bacillus phage vB_BveM-Goe7, complete genome	133347-133376	8	0.733
NZ_ALTY01000018_1	1.8\|44263\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44263-44292	30	NZ_CP040856	Lactobacillus johnsonii strain G2A plasmid unnamed2, complete sequence	11100-11129	8	0.733
NZ_ALTY01000018_1	1.9\|44329\|30\|NZ_ALTY01000018\|CRT,PILER-CR,CRISPRCasFinder	44329-44358	30	JX409895	Streptococcus phage JX01, complete genome	43007-43028	8	0.733

1. spacer 1.2|43867|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KJ951051 (Streptococcus dysgalactiae subsp. equisimilis strain G279 plasmid pG279, complete sequence) position: , mismatch: 0, identity: 1.0

agggtttagggggcacaaacaggctcattt	CRISPR spacer
agggtttagggggcacaaacaggctcattt	Protospacer
******************************

2. spacer 1.4|43999|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to KY065486 (Streptococcus phage IPP46, complete genome) position: , mismatch: 0, identity: 1.0

acaaggaaaagctagtgatgaggagcttgc	CRISPR spacer
acaaggaaaagctagtgatgaggagcttgc	Protospacer
******************************

3. spacer 1.4|43999|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to FR671411 (Streptococcus phage 2167) position: , mismatch: 0, identity: 1.0

acaaggaaaagctagtgatgaggagcttgc	CRISPR spacer
acaaggaaaagctagtgatgaggagcttgc	Protospacer
******************************

4. spacer 1.5|44065|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448742 (Streptococcus phage Javan37, complete genome) position: , mismatch: 0, identity: 1.0

atcgggtctatatgccccctaaaatcaatt	CRISPR spacer
atcgggtctatatgccccctaaaatcaatt	Protospacer
******************************

5. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 0, identity: 1.0

tcattacttgtatttataaatgatttagca	CRISPR spacer
tcattacttgtatttataaatgatttagca	Protospacer
******************************

6. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 0, identity: 1.0

tcattacttgtatttataaatgatttagca	CRISPR spacer
tcattacttgtatttataaatgatttagca	Protospacer
******************************

7. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 0, identity: 1.0

tcattacttgtatttataaatgatttagca	CRISPR spacer
tcattacttgtatttataaatgatttagca	Protospacer
******************************

8. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448742 (Streptococcus phage Javan37, complete genome) position: , mismatch: 0, identity: 1.0

tcattacttgtatttataaatgatttagca	CRISPR spacer
tcattacttgtatttataaatgatttagca	Protospacer
******************************

9. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 0, identity: 1.0

tcattacttgtatttataaatgatttagca	CRISPR spacer
tcattacttgtatttataaatgatttagca	Protospacer
******************************

10. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

11. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448971 (Streptococcus phage Javan52, complete genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

12. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

13. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448736 (Streptococcus phage Javan35, complete genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

14. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

15. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

16. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

17. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

18. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448938 (Streptococcus phage Javan44, complete genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

19. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

20. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448911 (Streptococcus phage Javan34, complete genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

21. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

22. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448742 (Streptococcus phage Javan37, complete genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

23. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

24. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

25. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448916 (Streptococcus phage Javan36, complete genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

26. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448673 (Streptococcus phage Javan119, complete genome) position: , mismatch: 0, identity: 1.0

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattaa	Protospacer
******************************

27. spacer 1.4|43999|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to KY065465 (Streptococcus phage IPP24, complete genome) position: , mismatch: 1, identity: 0.967

acaaggaaaagctagtgatgaggagcttgc	CRISPR spacer
gcaaggaaaagctagtgatgaggagcttgc	Protospacer
.*****************************

28. spacer 1.5|44065|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 1, identity: 0.967

atcgggtctatatgccccctaaaatcaatt	CRISPR spacer
atcgggtctatatgcctcctaaaatcaatt	Protospacer
****************.*************

29. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 1, identity: 0.967

tcattacttgtatttataaatgatttagca	CRISPR spacer
tcattacttgtatttataaataatttagca	Protospacer
*********************.********

30. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 1, identity: 0.967

tcattacttgtatttataaatgatttagca	CRISPR spacer
tcattacttgtatttataaataatttagca	Protospacer
*********************.********

31. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 1, identity: 0.967

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgtgattga	Protospacer
****************************.*

32. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448859 (Streptococcus phage Javan170, complete genome) position: , mismatch: 1, identity: 0.967

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgcgattaa	Protospacer
***********************.******

33. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 1, identity: 0.967

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgcgattaa	Protospacer
***********************.******

34. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448686 (Streptococcus phage Javan157, complete genome) position: , mismatch: 1, identity: 0.967

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgcgattaa	Protospacer
***********************.******

35. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 1, identity: 0.967

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgcgattaa	Protospacer
***********************.******

36. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448676 (Streptococcus phage Javan131, complete genome) position: , mismatch: 1, identity: 0.967

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgcgattaa	Protospacer
***********************.******

37. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448688 (Streptococcus phage Javan161, complete genome) position: , mismatch: 1, identity: 0.967

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaacgcgattaa	Protospacer
***********************.******

38. spacer 1.5|44065|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 2, identity: 0.933

atcgggtctatatgccccctaaaatcaatt	CRISPR spacer
atagggtctatatgccccttaaaatcaatt	Protospacer
** ***************.***********

39. spacer 1.5|44065|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448736 (Streptococcus phage Javan35, complete genome) position: , mismatch: 2, identity: 0.933

atcgggtctatatgccccctaaaatcaatt	CRISPR spacer
atagggtctatatgccccttaaaatcaatt	Protospacer
** ***************.***********

40. spacer 1.5|44065|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 2, identity: 0.933

atcgggtctatatgccccctaaaatcaatt	CRISPR spacer
atagggtctatatgccccttaaaatcaatt	Protospacer
** ***************.***********

41. spacer 1.5|44065|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 2, identity: 0.933

atcgggtctatatgccccctaaaatcaatt	CRISPR spacer
atagggtctatatgccccttaaaatcaatt	Protospacer
** ***************.***********

42. spacer 1.5|44065|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448938 (Streptococcus phage Javan44, complete genome) position: , mismatch: 2, identity: 0.933

atcgggtctatatgccccctaaaatcaatt	CRISPR spacer
atagggtctatatgccccttaaaatcaatt	Protospacer
** ***************.***********

43. spacer 1.5|44065|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448911 (Streptococcus phage Javan34, complete genome) position: , mismatch: 2, identity: 0.933

atcgggtctatatgccccctaaaatcaatt	CRISPR spacer
atagggtctatatgccccttaaaatcaatt	Protospacer
** ***************.***********

44. spacer 1.5|44065|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 2, identity: 0.933

atcgggtctatatgccccctaaaatcaatt	CRISPR spacer
atagggtctatatgccccttaaaatcaatt	Protospacer
** ***************.***********

45. spacer 1.5|44065|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448916 (Streptococcus phage Javan36, complete genome) position: , mismatch: 2, identity: 0.933

atcgggtctatatgccccctaaaatcaatt	CRISPR spacer
atagggtctatatgccccttaaaatcaatt	Protospacer
** ***************.***********

46. spacer 1.5|44065|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448755 (Streptococcus phage Javan423, complete genome) position: , mismatch: 3, identity: 0.9

atcgggtctatatgccccctaaaatcaatt	CRISPR spacer
gctgggtctatatgccccctaaaatcaatt	Protospacer
...***************************

47. spacer 1.5|44065|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448756 (Streptococcus phage Javan425, complete genome) position: , mismatch: 3, identity: 0.9

atcgggtctatatgccccctaaaatcaatt	CRISPR spacer
gctgggtctatatgccccctaaaatcaatt	Protospacer
...***************************

48. spacer 1.4|43999|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MK448763 (Streptococcus phage Javan451, complete genome) position: , mismatch: 6, identity: 0.8

acaaggaaaagctagtgatgaggagcttgc	CRISPR spacer
tcaaggtaaagcaagtgatgaggaattagc	Protospacer
 ***** ***** ***********..* **

49. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KM521836 (Staphylococcus epidermidis strain 12-00322 plasmid p12-00322, complete sequence) position: , mismatch: 6, identity: 0.8

tcattacttgtatttataaatgatttagca	CRISPR spacer
tcattaatggtatttataaatgaatcatcg	Protospacer
****** * ************** *.* *.

50. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to CP030483 (Staphylococcus aureus strain ER03913.3 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

tcattacttgtatttataaatgatttagca	CRISPR spacer
tcattaatggtatttataaatgaatcatcg	Protospacer
****** * ************** *.* *.

51. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 6, identity: 0.8

tcattacttgtatttataaatgatttagca	CRISPR spacer
tcattatttttatttataaatgaaatatta	Protospacer
******.** *************  ** .*

52. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032752 (Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tcattacttgtatttataaatgatttagca	CRISPR spacer
tatatctttgtatttagaaatgatttagcc	Protospacer
*   * .********* ************

53. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP035135 (Lactobacillus plantarum strain SRCM103311 plasmid unnamed4) position: , mismatch: 7, identity: 0.767

tcattacttgtatttataaatgatttagca	CRISPR spacer
tatatttttgtatttagaaatgatttagcc	Protospacer
*   * .********* ************

54. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MN693208 (Marine virus AFVG_25M383, complete genome) position: , mismatch: 7, identity: 0.767

tcattacttgtatttataaatgatttagca	CRISPR spacer
gaagcatttgaattaataaatgatttagca	Protospacer
  * .*.*** *** ***************

55. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MN101223 (Klebsiella phage KOX10, complete genome) position: , mismatch: 7, identity: 0.767

tcattacttgtatttataaatgatttagca	CRISPR spacer
ttagatcttgaatttataaatgatttatga	Protospacer
*.*   **** ****************  *

56. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MN693725 (Marine virus AFVG_250M494, complete genome) position: , mismatch: 7, identity: 0.767

tcattacttgtatttataaatgatttagca	CRISPR spacer
tctgccattgtatttataaatgctttacca	Protospacer
**  .  *************** **** **

57. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MN101224 (Klebsiella phage KOX11, complete genome) position: , mismatch: 7, identity: 0.767

tcattacttgtatttataaatgatttagca	CRISPR spacer
ttagatcttgaatttataaatgatttatga	Protospacer
*.*   **** ****************  *

58. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to KT001919 (Klebsiella phage Miro, complete genome) position: , mismatch: 7, identity: 0.767

tcattacttgtatttataaatgatttagca	CRISPR spacer
ttagatcttgaatttataaatgatttatga	Protospacer
*.*   **** ****************  *

59. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to HQ918180 (Klebsiella phage KP27, complete genome) position: , mismatch: 7, identity: 0.767

tcattacttgtatttataaatgatttagca	CRISPR spacer
ttagatcttgaatttataaatgatttatga	Protospacer
*.*   **** ****************  *

60. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to KT001918 (Klebsiella phage Matisse, complete genome) position: , mismatch: 7, identity: 0.767

tcattacttgtatttataaatgatttagca	CRISPR spacer
ttagatcttgaatttataaatgatttatga	Protospacer
*.*   **** ****************  *

61. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to LT607758 (Klebsiella phage PMBT1 genome assembly, complete genome: monopartite) position: , mismatch: 7, identity: 0.767

tcattacttgtatttataaatgatttagca	CRISPR spacer
ttagatcttgaatttataaatgatttatga	Protospacer
*.*   **** ****************  *

62. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to KX130727 (Escherichia phage phT4A, partial genome) position: , mismatch: 7, identity: 0.767

tcattacttgtatttataaatgatttagca	CRISPR spacer
ttagatcttgaatttataaatgatttatga	Protospacer
*.*   **** ****************  *

63. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to KT321315 (Enterobacter phage phiEap-3, complete genome) position: , mismatch: 7, identity: 0.767

tcattacttgtatttataaatgatttagca	CRISPR spacer
ttagatcttgaatttataaatgatttatga	Protospacer
*.*   **** ****************  *

64. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MN101221 (Klebsiella phage KOX8, complete genome) position: , mismatch: 7, identity: 0.767

tcattacttgtatttataaatgatttagca	CRISPR spacer
ttagatcttgaatttataaatgatttatga	Protospacer
*.*   **** ****************  *

65. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to GU295964 (Klebsiella phage KP15, complete genome) position: , mismatch: 7, identity: 0.767

tcattacttgtatttataaatgatttagca	CRISPR spacer
ttagatcttgaatttataaatgatttatga	Protospacer
*.*   **** ****************  *

66. spacer 1.6|44131|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to MN043730 (Bacillus phage vB_BveM-Goe7, complete genome) position: , mismatch: 8, identity: 0.733

agtctaatcgcctattattatccagataaa---	CRISPR spacer
agtctaagcgcctattattat---agcatagtc	Protospacer
******* *************   ...* *

67. spacer 1.8|44263|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP040856 (Lactobacillus johnsonii strain G2A plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tcattacttgtatttataaatgatttagca	CRISPR spacer
gttgcatttgtatttataaaggatttagcg	Protospacer
 .  .*.************* ********.

68. spacer 1.9|44329|30|NZ_ALTY01000018|CRT,PILER-CR,CRISPRCasFinder matches to JX409895 (Streptococcus phage JX01, complete genome) position: , mismatch: 8, identity: 0.733

atagacccatcacgaatcgaacgtgattaa	CRISPR spacer
atagacccatcacgaatcgaac--------	Protospacer
**********************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_ALTY01000022

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

71513 : 81786

Streptococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000638897.1\|71513_72659_-	cysteine desulfurase	A0A1X6WFP1	Pacmanvirus	7.3e-29	28.4
WP_000033716.1\|72905_73358_+	hypothetical protein	NA	NA	NA	NA
WP_000043879.1\|73401_74751_-	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	2.2e-32	25.5
WP_000024627.1\|74925_75261_-	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	1.2e-19	39.4
WP_001269902.1\|75344_76511_-	chorismate synthase	A0A291AU41	Pandoravirus	7.1e-40	34.4
WP_001195735.1\|76511_77579_-	3-dehydroquinate synthase	NA	NA	NA	NA
WP_000707048.1\|77672_78350_-	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	5.3e-88	68.4
WP_001037600.1\|78349_79507_-	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	4.6e-140	66.0
WP_000721261.1\|79641_81786_+	LTA synthase family protein	W6LM83	Streptococcus_phage	6.3e-260	67.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage