CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_ALUI01000184	Streptococcus agalactiae GB00897 ctg7180000003003, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000176	Streptococcus agalactiae GB00897 ctg7180000002995, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000196	Streptococcus agalactiae GB00897 ctg7180000003015, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000189	Streptococcus agalactiae GB00897 ctg7180000003008, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000250	Streptococcus agalactiae GB00897 ctg7180000003069, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000156	Streptococcus agalactiae GB00897 ctg7180000002975, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000244	Streptococcus agalactiae GB00897 ctg7180000003063, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000186	Streptococcus agalactiae GB00897 ctg7180000003005, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000087	Streptococcus agalactiae GB00897 ctg7180000002906, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000103	Streptococcus agalactiae GB00897 ctg7180000002922, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000061	Streptococcus agalactiae GB00897 ctg7180000002880, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000254	Streptococcus agalactiae GB00897 ctg7180000003073, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000258	Streptococcus agalactiae GB00897 ctg7180000003077, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000249	Streptococcus agalactiae GB00897 ctg7180000003068, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000273	Streptococcus agalactiae GB00897 ctg7180000003092, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000263	Streptococcus agalactiae GB00897 ctg7180000003082, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000226	Streptococcus agalactiae GB00897 ctg7180000003045, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000005	Streptococcus agalactiae GB00897 ctg7180000002585, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000180	Streptococcus agalactiae GB00897 ctg7180000002999, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000248	Streptococcus agalactiae GB00897 ctg7180000003067, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000203	Streptococcus agalactiae GB00897 ctg7180000003022, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000194	Streptococcus agalactiae GB00897 ctg7180000003013, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000090	Streptococcus agalactiae GB00897 ctg7180000002909, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000089	Streptococcus agalactiae GB00897 ctg7180000002908, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000173	Streptococcus agalactiae GB00897 ctg7180000002992, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000190	Streptococcus agalactiae GB00897 ctg7180000003009, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000235	Streptococcus agalactiae GB00897 ctg7180000003054, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000234	Streptococcus agalactiae GB00897 ctg7180000003053, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000016	Streptococcus agalactiae GB00897 ctg7180000002602, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000284	Streptococcus agalactiae GB00897 ctg7180000003103, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000197	Streptococcus agalactiae GB00897 ctg7180000003016, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000222	Streptococcus agalactiae GB00897 ctg7180000003041, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000246	Streptococcus agalactiae GB00897 ctg7180000003065, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000188	Streptococcus agalactiae GB00897 ctg7180000003007, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000097	Streptococcus agalactiae GB00897 ctg7180000002916, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000158	Streptococcus agalactiae GB00897 ctg7180000002977, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000231	Streptococcus agalactiae GB00897 ctg7180000003050, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000160	Streptococcus agalactiae GB00897 ctg7180000002979, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000114	Streptococcus agalactiae GB00897 ctg7180000002933, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000150	Streptococcus agalactiae GB00897 ctg7180000002969, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000056	Streptococcus agalactiae GB00897 ctg7180000002875, whole genome shotgun sequence	0 crisprs	cas3	0	0	0	0
NZ_ALUI01000066	Streptococcus agalactiae GB00897 ctg7180000002885, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000276	Streptococcus agalactiae GB00897 ctg7180000003095, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000053	Streptococcus agalactiae GB00897 ctg7180000002872, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000185	Streptococcus agalactiae GB00897 ctg7180000003004, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000199	Streptococcus agalactiae GB00897 ctg7180000003018, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000170	Streptococcus agalactiae GB00897 ctg7180000002989, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000163	Streptococcus agalactiae GB00897 ctg7180000002982, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000136	Streptococcus agalactiae GB00897 ctg7180000002955, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000211	Streptococcus agalactiae GB00897 ctg7180000003030, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000182	Streptococcus agalactiae GB00897 ctg7180000003001, whole genome shotgun sequence	0 crisprs	DinG	0	0	0	0
NZ_ALUI01000107	Streptococcus agalactiae GB00897 ctg7180000002926, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000082	Streptococcus agalactiae GB00897 ctg7180000002901, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000253	Streptococcus agalactiae GB00897 ctg7180000003072, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000012	Streptococcus agalactiae GB00897 ctg7180000002596, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000054	Streptococcus agalactiae GB00897 ctg7180000002873, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000036	Streptococcus agalactiae GB00897 ctg7180000002697, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000172	Streptococcus agalactiae GB00897 ctg7180000002991, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000266	Streptococcus agalactiae GB00897 ctg7180000003085, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000128	Streptococcus agalactiae GB00897 ctg7180000002947, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000140	Streptococcus agalactiae GB00897 ctg7180000002959, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000025	Streptococcus agalactiae GB00897 ctg7180000002617, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000115	Streptococcus agalactiae GB00897 ctg7180000002934, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000223	Streptococcus agalactiae GB00897 ctg7180000003042, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000239	Streptococcus agalactiae GB00897 ctg7180000003058, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000229	Streptococcus agalactiae GB00897 ctg7180000003048, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000135	Streptococcus agalactiae GB00897 ctg7180000002954, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000122	Streptococcus agalactiae GB00897 ctg7180000002941, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000232	Streptococcus agalactiae GB00897 ctg7180000003051, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000130	Streptococcus agalactiae GB00897 ctg7180000002949, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000214	Streptococcus agalactiae GB00897 ctg7180000003033, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000270	Streptococcus agalactiae GB00897 ctg7180000003089, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000215	Streptococcus agalactiae GB00897 ctg7180000003034, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000015	Streptococcus agalactiae GB00897 ctg7180000002601, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000164	Streptococcus agalactiae GB00897 ctg7180000002983, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000044	Streptococcus agalactiae GB00897 ctg7180000002863, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000050	Streptococcus agalactiae GB00897 ctg7180000002869, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000212	Streptococcus agalactiae GB00897 ctg7180000003031, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000031	Streptococcus agalactiae GB00897 ctg7180000002640, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000201	Streptococcus agalactiae GB00897 ctg7180000003020, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000026	Streptococcus agalactiae GB00897 ctg7180000002620, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000142	Streptococcus agalactiae GB00897 ctg7180000002961, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000272	Streptococcus agalactiae GB00897 ctg7180000003091, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000018	Streptococcus agalactiae GB00897 ctg7180000002605, whole genome shotgun sequence	0 crisprs	NA	0	0	0	1
NZ_ALUI01000104	Streptococcus agalactiae GB00897 ctg7180000002923, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000093	Streptococcus agalactiae GB00897 ctg7180000002912, whole genome shotgun sequence	0 crisprs	WYL	0	0	0	0
NZ_ALUI01000094	Streptococcus agalactiae GB00897 ctg7180000002913, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000017	Streptococcus agalactiae GB00897 ctg7180000002603, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000067	Streptococcus agalactiae GB00897 ctg7180000002886, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000001	Streptococcus agalactiae GB00897 ctg7180000002575, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000143	Streptococcus agalactiae GB00897 ctg7180000002962, whole genome shotgun sequence	0 crisprs	cas3	0	0	0	0
NZ_ALUI01000218	Streptococcus agalactiae GB00897 ctg7180000003037, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000157	Streptococcus agalactiae GB00897 ctg7180000002976, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000259	Streptococcus agalactiae GB00897 ctg7180000003078, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000124	Streptococcus agalactiae GB00897 ctg7180000002943, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000152	Streptococcus agalactiae GB00897 ctg7180000002971, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000282	Streptococcus agalactiae GB00897 ctg7180000003101, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000080	Streptococcus agalactiae GB00897 ctg7180000002899, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000096	Streptococcus agalactiae GB00897 ctg7180000002915, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000028	Streptococcus agalactiae GB00897 ctg7180000002625, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000041	Streptococcus agalactiae GB00897 ctg7180000002860, whole genome shotgun sequence	1 crisprs	cas1,cas2	0	0	0	0
NZ_ALUI01000035	Streptococcus agalactiae GB00897 ctg7180000002665, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000073	Streptococcus agalactiae GB00897 ctg7180000002892, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000224	Streptococcus agalactiae GB00897 ctg7180000003043, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000113	Streptococcus agalactiae GB00897 ctg7180000002932, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000034	Streptococcus agalactiae GB00897 ctg7180000002653, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000162	Streptococcus agalactiae GB00897 ctg7180000002981, whole genome shotgun sequence	0 crisprs	cas8c,cas7,cas4	0	0	0	0
NZ_ALUI01000009	Streptococcus agalactiae GB00897 ctg7180000002591, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000243	Streptococcus agalactiae GB00897 ctg7180000003062, whole genome shotgun sequence	1 crisprs	csn2,cas2,cas1,cas9	2	0	0	0
NZ_ALUI01000065	Streptococcus agalactiae GB00897 ctg7180000002884, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000252	Streptococcus agalactiae GB00897 ctg7180000003071, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000020	Streptococcus agalactiae GB00897 ctg7180000002610, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000118	Streptococcus agalactiae GB00897 ctg7180000002937, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000119	Streptococcus agalactiae GB00897 ctg7180000002938, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000083	Streptococcus agalactiae GB00897 ctg7180000002902, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000177	Streptococcus agalactiae GB00897 ctg7180000002996, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000127	Streptococcus agalactiae GB00897 ctg7180000002946, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000262	Streptococcus agalactiae GB00897 ctg7180000003081, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000111	Streptococcus agalactiae GB00897 ctg7180000002930, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000205	Streptococcus agalactiae GB00897 ctg7180000003024, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000068	Streptococcus agalactiae GB00897 ctg7180000002887, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000023	Streptococcus agalactiae GB00897 ctg7180000002615, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000134	Streptococcus agalactiae GB00897 ctg7180000002953, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000088	Streptococcus agalactiae GB00897 ctg7180000002907, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000091	Streptococcus agalactiae GB00897 ctg7180000002910, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000159	Streptococcus agalactiae GB00897 ctg7180000002978, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000110	Streptococcus agalactiae GB00897 ctg7180000002929, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000269	Streptococcus agalactiae GB00897 ctg7180000003088, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000144	Streptococcus agalactiae GB00897 ctg7180000002963, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000267	Streptococcus agalactiae GB00897 ctg7180000003086, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000033	Streptococcus agalactiae GB00897 ctg7180000002650, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000145	Streptococcus agalactiae GB00897 ctg7180000002964, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000100	Streptococcus agalactiae GB00897 ctg7180000002919, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000195	Streptococcus agalactiae GB00897 ctg7180000003014, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000260	Streptococcus agalactiae GB00897 ctg7180000003079, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000283	Streptococcus agalactiae GB00897 ctg7180000003102, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000060	Streptococcus agalactiae GB00897 ctg7180000002879, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000261	Streptococcus agalactiae GB00897 ctg7180000003080, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000193	Streptococcus agalactiae GB00897 ctg7180000003012, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000047	Streptococcus agalactiae GB00897 ctg7180000002866, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000046	Streptococcus agalactiae GB00897 ctg7180000002865, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000198	Streptococcus agalactiae GB00897 ctg7180000003017, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000175	Streptococcus agalactiae GB00897 ctg7180000002994, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000132	Streptococcus agalactiae GB00897 ctg7180000002951, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000213	Streptococcus agalactiae GB00897 ctg7180000003032, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000010	Streptococcus agalactiae GB00897 ctg7180000002592, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000225	Streptococcus agalactiae GB00897 ctg7180000003044, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000146	Streptococcus agalactiae GB00897 ctg7180000002965, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000059	Streptococcus agalactiae GB00897 ctg7180000002878, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000077	Streptococcus agalactiae GB00897 ctg7180000002896, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000040	Streptococcus agalactiae GB00897 ctg7180000002859, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000048	Streptococcus agalactiae GB00897 ctg7180000002867, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000085	Streptococcus agalactiae GB00897 ctg7180000002904, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000207	Streptococcus agalactiae GB00897 ctg7180000003026, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000168	Streptococcus agalactiae GB00897 ctg7180000002987, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000236	Streptococcus agalactiae GB00897 ctg7180000003055, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000274	Streptococcus agalactiae GB00897 ctg7180000003093, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000084	Streptococcus agalactiae GB00897 ctg7180000002903, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000133	Streptococcus agalactiae GB00897 ctg7180000002952, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000242	Streptococcus agalactiae GB00897 ctg7180000003061, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_ALUI01000257	Streptococcus agalactiae GB00897 ctg7180000003076, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000071	Streptococcus agalactiae GB00897 ctg7180000002890, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000166	Streptococcus agalactiae GB00897 ctg7180000002985, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000216	Streptococcus agalactiae GB00897 ctg7180000003035, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000125	Streptococcus agalactiae GB00897 ctg7180000002944, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000137	Streptococcus agalactiae GB00897 ctg7180000002956, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000002	Streptococcus agalactiae GB00897 ctg7180000002579, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000029	Streptococcus agalactiae GB00897 ctg7180000002631, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000191	Streptococcus agalactiae GB00897 ctg7180000003010, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000116	Streptococcus agalactiae GB00897 ctg7180000002935, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000123	Streptococcus agalactiae GB00897 ctg7180000002942, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000052	Streptococcus agalactiae GB00897 ctg7180000002871, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_ALUI01000251	Streptococcus agalactiae GB00897 ctg7180000003070, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000022	Streptococcus agalactiae GB00897 ctg7180000002614, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000221	Streptococcus agalactiae GB00897 ctg7180000003040, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000161	Streptococcus agalactiae GB00897 ctg7180000002980, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000098	Streptococcus agalactiae GB00897 ctg7180000002917, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000147	Streptococcus agalactiae GB00897 ctg7180000002966, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000003	Streptococcus agalactiae GB00897 ctg7180000002582, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000209	Streptococcus agalactiae GB00897 ctg7180000003028, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000278	Streptococcus agalactiae GB00897 ctg7180000003097, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000233	Streptococcus agalactiae GB00897 ctg7180000003052, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000151	Streptococcus agalactiae GB00897 ctg7180000002970, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000069	Streptococcus agalactiae GB00897 ctg7180000002888, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000200	Streptococcus agalactiae GB00897 ctg7180000003019, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000120	Streptococcus agalactiae GB00897 ctg7180000002939, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000058	Streptococcus agalactiae GB00897 ctg7180000002877, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000063	Streptococcus agalactiae GB00897 ctg7180000002882, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000043	Streptococcus agalactiae GB00897 ctg7180000002862, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000139	Streptococcus agalactiae GB00897 ctg7180000002958, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000167	Streptococcus agalactiae GB00897 ctg7180000002986, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000202	Streptococcus agalactiae GB00897 ctg7180000003021, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000230	Streptococcus agalactiae GB00897 ctg7180000003049, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000153	Streptococcus agalactiae GB00897 ctg7180000002972, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000149	Streptococcus agalactiae GB00897 ctg7180000002968, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000174	Streptococcus agalactiae GB00897 ctg7180000002993, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000247	Streptococcus agalactiae GB00897 ctg7180000003066, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000129	Streptococcus agalactiae GB00897 ctg7180000002948, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000014	Streptococcus agalactiae GB00897 ctg7180000002600, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000240	Streptococcus agalactiae GB00897 ctg7180000003059, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000179	Streptococcus agalactiae GB00897 ctg7180000002998, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000169	Streptococcus agalactiae GB00897 ctg7180000002988, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000112	Streptococcus agalactiae GB00897 ctg7180000002931, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000038	Streptococcus agalactiae GB00897 ctg7180000002857, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000027	Streptococcus agalactiae GB00897 ctg7180000002623, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000039	Streptococcus agalactiae GB00897 ctg7180000002858, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000102	Streptococcus agalactiae GB00897 ctg7180000002921, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000271	Streptococcus agalactiae GB00897 ctg7180000003090, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000064	Streptococcus agalactiae GB00897 ctg7180000002883, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000030	Streptococcus agalactiae GB00897 ctg7180000002632, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000072	Streptococcus agalactiae GB00897 ctg7180000002891, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000210	Streptococcus agalactiae GB00897 ctg7180000003029, whole genome shotgun sequence	1 crisprs	NA	3	1	0	0
NZ_ALUI01000265	Streptococcus agalactiae GB00897 ctg7180000003084, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000079	Streptococcus agalactiae GB00897 ctg7180000002898, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000154	Streptococcus agalactiae GB00897 ctg7180000002973, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000131	Streptococcus agalactiae GB00897 ctg7180000002950, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000070	Streptococcus agalactiae GB00897 ctg7180000002889, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000227	Streptococcus agalactiae GB00897 ctg7180000003046, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000008	Streptococcus agalactiae GB00897 ctg7180000002590, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000049	Streptococcus agalactiae GB00897 ctg7180000002868, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	0	0
NZ_ALUI01000237	Streptococcus agalactiae GB00897 ctg7180000003056, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000255	Streptococcus agalactiae GB00897 ctg7180000003074, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000220	Streptococcus agalactiae GB00897 ctg7180000003039, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000024	Streptococcus agalactiae GB00897 ctg7180000002616, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000076	Streptococcus agalactiae GB00897 ctg7180000002895, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000171	Streptococcus agalactiae GB00897 ctg7180000002990, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000183	Streptococcus agalactiae GB00897 ctg7180000003002, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000277	Streptococcus agalactiae GB00897 ctg7180000003096, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000106	Streptococcus agalactiae GB00897 ctg7180000002925, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000181	Streptococcus agalactiae GB00897 ctg7180000003000, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000238	Streptococcus agalactiae GB00897 ctg7180000003057, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000011	Streptococcus agalactiae GB00897 ctg7180000002595, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000057	Streptococcus agalactiae GB00897 ctg7180000002876, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000192	Streptococcus agalactiae GB00897 ctg7180000003011, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000279	Streptococcus agalactiae GB00897 ctg7180000003098, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000281	Streptococcus agalactiae GB00897 ctg7180000003100, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000007	Streptococcus agalactiae GB00897 ctg7180000002589, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000032	Streptococcus agalactiae GB00897 ctg7180000002647, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000045	Streptococcus agalactiae GB00897 ctg7180000002864, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_ALUI01000117	Streptococcus agalactiae GB00897 ctg7180000002936, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000004	Streptococcus agalactiae GB00897 ctg7180000002583, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000256	Streptococcus agalactiae GB00897 ctg7180000003075, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000108	Streptococcus agalactiae GB00897 ctg7180000002927, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000219	Streptococcus agalactiae GB00897 ctg7180000003038, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000105	Streptococcus agalactiae GB00897 ctg7180000002924, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000074	Streptococcus agalactiae GB00897 ctg7180000002893, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000165	Streptococcus agalactiae GB00897 ctg7180000002984, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000264	Streptococcus agalactiae GB00897 ctg7180000003083, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000086	Streptococcus agalactiae GB00897 ctg7180000002905, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000042	Streptococcus agalactiae GB00897 ctg7180000002861, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000138	Streptococcus agalactiae GB00897 ctg7180000002957, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000141	Streptococcus agalactiae GB00897 ctg7180000002960, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000228	Streptococcus agalactiae GB00897 ctg7180000003047, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000206	Streptococcus agalactiae GB00897 ctg7180000003025, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000055	Streptococcus agalactiae GB00897 ctg7180000002874, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_ALUI01000241	Streptococcus agalactiae GB00897 ctg7180000003060, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_ALUI01000268	Streptococcus agalactiae GB00897 ctg7180000003087, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	0	0
NZ_ALUI01000006	Streptococcus agalactiae GB00897 ctg7180000002587, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000099	Streptococcus agalactiae GB00897 ctg7180000002918, whole genome shotgun sequence	0 crisprs	csa3	0	0	0	0
NZ_ALUI01000126	Streptococcus agalactiae GB00897 ctg7180000002945, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000155	Streptococcus agalactiae GB00897 ctg7180000002974, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000101	Streptococcus agalactiae GB00897 ctg7180000002920, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000178	Streptococcus agalactiae GB00897 ctg7180000002997, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000081	Streptococcus agalactiae GB00897 ctg7180000002900, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000280	Streptococcus agalactiae GB00897 ctg7180000003099, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000148	Streptococcus agalactiae GB00897 ctg7180000002967, whole genome shotgun sequence	0 crisprs	cas3	0	0	0	0
NZ_ALUI01000019	Streptococcus agalactiae GB00897 ctg7180000002608, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000092	Streptococcus agalactiae GB00897 ctg7180000002911, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000187	Streptococcus agalactiae GB00897 ctg7180000003006, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000021	Streptococcus agalactiae GB00897 ctg7180000002611, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000062	Streptococcus agalactiae GB00897 ctg7180000002881, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000121	Streptococcus agalactiae GB00897 ctg7180000002940, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000208	Streptococcus agalactiae GB00897 ctg7180000003027, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000109	Streptococcus agalactiae GB00897 ctg7180000002928, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000275	Streptococcus agalactiae GB00897 ctg7180000003094, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000051	Streptococcus agalactiae GB00897 ctg7180000002870, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000013	Streptococcus agalactiae GB00897 ctg7180000002597, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000037	Streptococcus agalactiae GB00897 ctg7180000002832, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000078	Streptococcus agalactiae GB00897 ctg7180000002897, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000204	Streptococcus agalactiae GB00897 ctg7180000003023, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000095	Streptococcus agalactiae GB00897 ctg7180000002914, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000075	Streptococcus agalactiae GB00897 ctg7180000002894, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	0	0
NZ_ALUI01000245	Streptococcus agalactiae GB00897 ctg7180000003064, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_ALUI01000217	Streptococcus agalactiae GB00897 ctg7180000003036, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_ALUI01000041_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_ALUI01000041_1

1283-1380

Unclear

I-C

Consensus_repeat	Method
GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT	CRISPRCasFinder

1 spacers

cas2,cas1

The CRISPR arrays of NZ_ALUI01000041_1

>merge|NZ_ALUI01000041|1|1283-1380|CRISPRCasFinder
GTCGCACCCTTTGCGGGTGCGTGGATTGAAATTTGCCCCTCTGATAAGAATGGACTAGCAACACGCGTCGCACCCTTTGCGGGTGCGTGGATTGAAAT

>NZ_ALUI01000041|1|1|1283-1380|CRISPRCasFinder
GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT	TTGCCCCTCTGATAAGAATGGACTAGCAACACGC
GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT

>NZ_ALUI01000041.1|WP_000989528.1|842_1136_+|CRISPR-associated-endonuclease-Cas2
MMVLVTYDVNTKTVAGRRRLRHVAKLCVDYGQRVQNSVFECSVTPAEFVEIKNELLTIIDQKSDSIRFYLLGKNWQNRVETIGKNDSYDPDIGVLLL
>NZ_ALUI01000041.1|WP_000293937.1|0_832_+|CRISPR-associated-endonuclease-Cas1
NLSFHTPQGRFCGRFVGSTNGNVLLRREHYRLADHALSIEYAKRFILAKVSNSRKYLIRFKRDHRDRIDIQLFEDINTELMWALELIQSAPDKETLLGIEGQAANQYFRAFNELVLTDKDTFRFNGRTRRPPQDCINALMSLGYSLLTYECQSALEAVGLDSYVGFYHTDRPGRASLALDLVEEFRSYIVDRFVFSLVNKGQLNKRHFDIKENSSVILTEKGRTIFIESWQKRKHTVVEHPFTKEKVKLMLLPYVQAQLLSKAIRGDLESYPPFLI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

330 : 11314

Streptococcus_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000691736.1\|330_2250_-	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	99.5
WP_079263367.1\|2265_2352_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_001224320.1\|2626_3562_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	7.7e-170	99.0
WP_000769868.1\|3558_4560_-	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
WP_000804748.1\|4556_6734_-	membrane protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
WP_000331160.1\|6736_9184_-	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	100.0
WP_000506270.1\|9167_9674_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
WP_000342539.1\|9648_10146_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
WP_001009056.1\|10262_10484_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_000430395.1\|10526_11314_-	replication initiation factor domain-containing protein	A0A1S5SEX3	Streptococcus_phage	3.7e-149	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_ALUI01000052

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5765 : 13782

Streptococcus_phage(62.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000661535.1\|5765_6254_-	hypothetical protein	A0A1X9I5V2	Streptococcus_phage	1.2e-46	56.2
WP_001258774.1\|6338_6944_-	hypothetical protein	A0A1X9I5U4	Streptococcus_phage	7.0e-39	46.8
WP_000694577.1\|7127_7301_-	hypothetical protein	A0A1X9I5U0	Streptococcus_phage	1.9e-10	59.6
WP_000838178.1\|7560_9063_-	DNA primase	Q9AZI5	Lactococcus_phage	2.7e-63	37.2
WP_001029298.1\|9082_9940_-	hypothetical protein	A0A1X9I6L2	Streptococcus_phage	4.3e-119	72.0
WP_000492120.1\|9940_10213_-	hypothetical protein	A0A1X9I5U9	Streptococcus_phage	2.5e-28	69.8
WP_000174504.1\|10205_10547_-	hypothetical protein	NA	NA	NA	NA
WP_000206024.1\|10543_10906_-	hypothetical protein	NA	NA	NA	NA
WP_025194473.1\|10917_11109_-	hypothetical protein	NA	NA	NA	NA
WP_000877492.1\|11232_11565_-	hypothetical protein	NA	NA	NA	NA
WP_001261785.1\|11819_12089_-	hypothetical protein	NA	NA	NA	NA
WP_000845516.1\|12088_12709_-	phage repressor protein	A0A1W6JPC3	Staphylococcus_phage	1.4e-39	42.3
WP_017644534.1\|12762_12924_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000906796.1\|13089_13782_+	helix-turn-helix transcriptional regulator	A0A0P0IV68	Lactobacillus_phage	4.3e-08	49.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_ALUI01000045

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12456 : 24521

Gordonia_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000783424.1\|12456_13761_-	LysM peptidoglycan-binding domain-containing protein	A0A0E3XB61	Gordonia_phage	4.6e-11	36.0
WP_001045908.1\|13907_14807_-	peptidoglycan DD-metalloendopeptidase family protein	A0A221J6U0	Arthrobacter_phage	4.1e-19	45.9
WP_000166563.1\|14999_16547_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	2.2e-44	52.4
WP_000780020.1\|16566_17319_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000685111.1\|17338_17890_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.8e-25	35.6
WP_001291325.1\|18057_19080_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	9.6e-65	44.6
WP_000220672.1\|19107_20562_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.3e-54	32.5
WP_001042263.1\|20795_24521_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.6e-40	27.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_ALUI01000018

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr_ID: NZ_ALUI01000018.1|WP_000384271.1|846_1173_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_ALUI01000018.1|WP_000384271.1|846_1173_-|hypothetical-protein

846_1173_-

108 aa aa

AcrIIA21

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3639\|WP_000384271.1\|AcrIIA21\|II-A\|Verified\|Streptococcus	1.0	1	1.0

6. NZ_ALUI01000210

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CRISPR-Cas detection and classification

Crispr_ID: NZ_ALUI01000210_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_ALUI01000210_1

3282-3731

Orphan

Consensus_repeat	Method
NGTNCTNGCTGANGTNGA	CRT

7 spacers

The CRISPR arrays of NZ_ALUI01000210_1

>merge|NZ_ALUI01000210|1|3282-3731|CRT
GGTGCTGGCTGACGTCGTGGCACTCATTGAAGCGCTAGTGCTGGCTGACATCGAGGCACTTGTTGAAGCACTTGTGCTGGCTGACATCGAGGCACTTGTTGAAGCACTTGTGCTGGCTGACATTGACGCACTCGTTGAAGCGCTAGTGCTGGCTGACATCGAGGCACTTGTTGAAGCACTTGTGCTGGCTGACATTGACGCACTCATTGAGGCGCTAGTGCTGGCTGATGTCGATGCACTGGTACTGGCACTTGTGGAAGAACTTGTACTTGCCGATGTTGAGGCGCTAGTACTTGCTGATGTGGAAGCACTCGTACTTGCACTTGTTGAAGCGCTGGTACTTGCTGATGTCGATGCACTCATTGAGGCGCTAGTACTTGCACTTGTGGAAGCACTGGTGCTGGCTGACGTCGAGGCACTCATTGAGGCGCTAGTACTTGCTGACGTGGA

>NZ_ALUI01000210|1|1|3282-3731|CRT
GGTGCTGGCTGACGTCGT	GGCACTCATTGAAGCGCTAGTGCTGGCTGACATCGAGGCACTTGTTGAAGCACT
TGTGCTGGCTGACATCGA	GGCACTTGTTGAAGCACTTGTGCTGGCTGACATTGACGCACTCGTTGAAGCGCT
AGTGCTGGCTGACATCGA	GGCACTTGTTGAAGCACTTGTGCTGGCTGACATTGACGCACTCATTGAGGCGCT
AGTGCTGGCTGATGTCGA	TGCACTGGTACTGGCACTTGTGGAAGAACTTGTACTTGCCGATGTTGAGGCGCT
AGTACTTGCTGATGTGGA	AGCACTCGTACTTGCACTTGTTGAAGCGCT
GGTACTTGCTGATGTCGA	TGCACTCATTGAGGCGCT
AGTACTTGCACTTGTGGA	AGCACTGGTGCTGGCTGACGTCGAGGCACTCATTGAGGCGCT
AGTACTTGCTGACGTGGA

>NZ_ALUI01000210.1|WP_001263775.1|1727_2735_-|sugar-transferase
MRVHITSIYGQSPRSIALISQKLVKDVGRQLGYDEMGIYFYNDHAETHGERSTRMDGIIAGLGRGDIVVFQVPTWNSTEFDELFLDKLQAYGARIITFVHDIVPLMFESNFYLLDRVIDMYNRSDVVILPTKAMHDYLIEKGMTTSKVLYQEVWDHPVNIDLPRPECQKVLSFAGDIQRFPFVNDWKENIPLIYYGDGSRLNSEANVHAQGWKDDVELMLSLSKRGGFGLCWSEDREELVERRYSRMNASYKLSTFLAAGLPIIANHDISSRDFIKQHGLGFTVETLEEAIEKINNMEKETYDSYVENVEKIATLLRNGYITKKLLIDAVHMLYR
>NZ_ALUI01000210.1|WP_000751408.1|513_1719_-|glycosyl-transferase
MKKTIVLGADFQYRDQVMTTIKSIVSHNQHLTIYIINTDFPVEWFNILNHSLEQFDCRVKNIPISSDVFEGIPTLSHISVAGFFRWFIPIHLEEEIVLYLDSDVIVRGSLDPLFDINLEENLLGAVADHFSTLYYGDTAPVSFNSGVMLINNSLWKKEEIYNSLMRIADKGSAVGVGDQEYLNILTQNRWIDIGKQYNVQIGQDVNINAYGRPDLYHFYDDCEPVIVHYNSQDKPWNKYSQSRYRSEWWYYFGLEWSVIYAQQQKNLNRLTGKTLNLFTLTASDTLEHIEVLAKALPDYQFHIAARSDISEKLANLETYSNIKVYKLVINPILEELIRNCDVYLDINHSYEVEGILDKIKEENKPILAFDSTAHTTKNIEVISETMPELMVKRIREVGPLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_ALUI01000210_1	1.7\|3672\|42\|NZ_ALUI01000210\|CRT	3672-3713	42	NZ_ALUI01000116.1	2869-2910	0	1.0
NZ_ALUI01000210_1	1.5\|3588\|30\|NZ_ALUI01000210\|CRT	3588-3617	30	NZ_ALUI01000116.1	2485-2514	2	0.933
NZ_ALUI01000210_1	1.6\|3636\|18\|NZ_ALUI01000210\|CRT	3636-3653	18	NZ_ALUI01000116.1	2581-2598	2	0.889
NZ_ALUI01000210_1	1.6\|3636\|18\|NZ_ALUI01000210\|CRT	3636-3653	18	NZ_ALUI01000116.1	2629-2646	2	0.889
NZ_ALUI01000210_1	1.6\|3636\|18\|NZ_ALUI01000210\|CRT	3636-3653	18	NZ_ALUI01000116.1	2653-2670	2	0.889
NZ_ALUI01000210_1	1.6\|3636\|18\|NZ_ALUI01000210\|CRT	3636-3653	18	NZ_ALUI01000210.1	3264-3281	2	0.889

1. spacer 1.7|3672|42|NZ_ALUI01000210|CRT matches to position: 2869-2910, mismatch: 0, identity: 1.0

agcactggtgctggctgacgtcgaggcactcattgaggcgct	CRISPR spacer
agcactggtgctggctgacgtcgaggcactcattgaggcgct	Protospacer
******************************************

2. spacer 1.5|3588|30|NZ_ALUI01000210|CRT matches to position: 2485-2514, mismatch: 2, identity: 0.933

agcactcgtacttgcacttgttgaagcgct	CRISPR spacer
agcactcatacttgcacttgttgaagcact	Protospacer
*******.*******************.**

3. spacer 1.6|3636|18|NZ_ALUI01000210|CRT matches to position: 2581-2598, mismatch: 2, identity: 0.889

tgcactcattgaggcgct	CRISPR spacer
tgcacttgttgaggcgct	Protospacer
******..**********

4. spacer 1.6|3636|18|NZ_ALUI01000210|CRT matches to position: 2629-2646, mismatch: 2, identity: 0.889

tgcactcattgaggcgct	CRISPR spacer
tgcactggttgaggcgct	Protospacer
****** .**********

5. spacer 1.6|3636|18|NZ_ALUI01000210|CRT matches to position: 2653-2670, mismatch: 2, identity: 0.889

tgcactcattgaggcgct	CRISPR spacer
tgcactggttgaggcgct	Protospacer
****** .**********

6. spacer 1.6|3636|18|NZ_ALUI01000210|CRT matches to position: 3264-3281, mismatch: 2, identity: 0.889

tgcactcattgaggcgct	CRISPR spacer
tgcactcgttgagacgct	Protospacer
*******.*****.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_ALUI01000210_1	1.5\|3588\|30\|NZ_ALUI01000210\|CRT	3588-3617	30	NZ_CP052067	Lactobacillus paracasei strain 347-16 plasmid unnamed2, complete sequence	25769-25798	8	0.733
NZ_ALUI01000210_1	1.5\|3588\|30\|NZ_ALUI01000210\|CRT	3588-3617	30	NZ_CP048005	Lactobacillus paracasei strain CACC 566 plasmid p2CACC566, complete sequence	14616-14645	8	0.733
NZ_ALUI01000210_1	1.5\|3588\|30\|NZ_ALUI01000210\|CRT	3588-3617	30	NZ_CP044365	Lactobacillus paracasei strain TD 062 plasmid unnamed4, complete sequence	43709-43738	8	0.733

1. spacer 1.5|3588|30|NZ_ALUI01000210|CRT matches to NZ_CP052067 (Lactobacillus paracasei strain 347-16 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

-agcactcgtacttgcacttgttgaagcgct	CRISPR spacer
taacg-gcgtacttgcagttgttgaagccga	Protospacer
 *.*.  ********** **********

2. spacer 1.5|3588|30|NZ_ALUI01000210|CRT matches to NZ_CP048005 (Lactobacillus paracasei strain CACC 566 plasmid p2CACC566, complete sequence) position: , mismatch: 8, identity: 0.733

-agcactcgtacttgcacttgttgaagcgct	CRISPR spacer
taacg-gcgtacttgcagttgttgaagccga	Protospacer
 *.*.  ********** **********

3. spacer 1.5|3588|30|NZ_ALUI01000210|CRT matches to NZ_CP044365 (Lactobacillus paracasei strain TD 062 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.733

-agcactcgtacttgcacttgttgaagcgct	CRISPR spacer
taacg-acgtacttgcagttgttgaagccga	Protospacer
 *.*.  ********** **********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_ALUI01000242

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7445 : 15438

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000638895.1\|7445_8591_-	cysteine desulfurase	A0A1X6WFP1	Pacmanvirus	9.5e-29	28.4
WP_000033715.1\|8837_9290_+	hypothetical protein	NA	NA	NA	NA
WP_000043884.1\|9332_10682_-	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	1.3e-32	25.5
WP_000024629.1\|10856_11192_-	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	1.5e-19	39.4
WP_001269904.1\|11275_12442_-	chorismate synthase	A0A291AU41	Pandoravirus	7.1e-40	34.4
WP_001195725.1\|12442_13510_-	3-dehydroquinate synthase	NA	NA	NA	NA
WP_000707048.1\|13603_14281_-	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	5.3e-88	68.4
WP_001037599.1\|14280_15438_-	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	6.0e-140	65.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

8. NZ_ALUI01000055

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

9897 : 17101

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001042661.1\|9897_10602_-	transglycosylase SLT domain-containing protein	A0A2H4J6C5	uncultured_Caudovirales_phage	3.2e-27	56.6
WP_000029067.1\|10707_11247_-	LysM peptidoglycan-binding domain-containing protein	A0A249XZV3	Enterococcus_phage	3.0e-17	46.4
WP_000359358.1\|11462_12257_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_000510606.1\|12249_13092_-	energy-coupling factor transporter ATPase	W6JKT0	Anomala_cuprea_entomopoxvirus	2.5e-18	25.5
WP_000181757.1\|13067_13907_-	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	3.5e-20	30.0
WP_000239224.1\|13906_14449_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_000217765.1\|14571_15855_-	insulinase family protein	A0A2K9V7S4	Bandra_megavirus	1.6e-21	33.3
WP_000706190.1\|15856_17101_-	insulinase family protein	A0A1X9I714	Streptococcus_phage	1.7e-87	41.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

9. NZ_ALUI01000116

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

10. NZ_ALUI01000243

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CRISPR-Cas detection and classification

Crispr_ID: NZ_ALUI01000243_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_ALUI01000243_1

2929-3079

TypeII

II-A

Consensus_repeat	Method
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAC	PILER-CR
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRISPRCasFinder

2 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_ALUI01000243_1

>merge|NZ_ALUI01000243|1|2929-3079|PILER-CR,CRISPRCasFinder
AACAGCACAGCTCTAAAACACATATCCTTTTGTTAGGTCAAAAGAAGATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACGTCATAAAGAATGAGGTCTATGCTGATTGTTTTGGGACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_ALUI01000243|1|1|2929-3079|PILER-CR
AACAGCACAGCTCTAAAACACATATCCTTTTGTTAGGTCAAAAGAAGA	TGTTTTGGAACCATTCGAAACAGCA
CAGCTCTAAAACACGTCATAAAGAATGAGGTCTATGCTGATTGTTTTG	GGACCATTCGAAACAGCACAG
CTCTAAAAC

>NZ_ALUI01000243|1|1|2977-3079|CRISPRCasFinder
TGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACGTCATAAAGAATGAGGTCTATGCTGAT
TGTTTTGGGACCATTCGAAACAGCACAGCTCTAAAAC

Protein	Function_ID	Function_description	E-value
NZ_ALUI01000243.1\|WP_000607258.1\|5040_7971_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_ALUI01000243.1\|WP_000590706.1\|3179_3845_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.61399e-122
NZ_ALUI01000243.1\|WP_000122194.1\|3831_4173_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.38084e-52
NZ_ALUI01000243.1\|WP_000438314.1\|1937_2354_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	4.64422e-78
NZ_ALUI01000243.1\|WP_001019132.1\|0_1802_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_ALUI01000243.1\|WP_000929489.1\|4169_5039_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.54315e-139

>NZ_ALUI01000243.1|WP_000900526.1|2664_2925_-|hypothetical-protein
MLGHHCGVLVFCYTEINFQRMWGKAVIRLIQDVIQNLVGQANEITPIYQFDWETYILATKKYERHLEVCLLVENSNCFSDSKRMCQ
>NZ_ALUI01000243.1|WP_011058334.1|2486_2657_-|hypothetical-protein
MKGYNSNLMVKGLGCSTLYLIISLTALVLLVIAGVFFVINTCKLTRKAVENLSIIN
>NZ_ALUI01000243.1|WP_000438314.1|1937_2354_-|nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
>NZ_ALUI01000243.1|WP_001019132.1|0_1802_-|elongation-factor-4
MNIEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRAEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGEVDAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTITLANNPAIEPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTRVDSIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKLIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEACLSV
>NZ_ALUI01000243.1|WP_000590706.1|3179_3845_-|type-II-A-CRISPR-associated-protein-Csn2
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
>NZ_ALUI01000243.1|WP_000122194.1|3831_4173_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNTANNAMIGRLKVNNPKKGNITLLTVTEKQFARMVYLHGERNTSVANSDSRLVFLGDSYDQD
>NZ_ALUI01000243.1|WP_000929489.1|4169_5039_-|type-II-CRISPR-associated-endonuclease-Cas1
MAGWRTVVVNTHSKLSYKNNHLIFKDSYQTEMIHLSEIDILIMETTDIVLSTMLIKRLVDENILVIFCDDKRLPTAMLMPYYARHDSSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLGECSFFEKSQSIMNLYHDLEPFDPSNREGHAARIYFNTLFGNDFSREQDNPINAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIIYENRQSDFVKMKRELFSMFSETYSYNGKEMYLSNIVSDYTKKVIKSLNSDGNGIPEFRI
>NZ_ALUI01000243.1|WP_000607258.1|5040_7971_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
KNEDFLRKQRTFDNGSIPHQVHLTELKAIIRRQSEYYPFLKENQDRIEKILTFRIPYYIGPLAREKSDFAWMTRKTDDSIRPWNFEDLVDKEKSAEAFIHRMTNNDFYLPEEKVLPKHSLIYEKFTVYNELTKVRYKNEQGETYFFDSNIKQEIFDGVFKEHRKVSKKKLLDFLAKEYEEFRIVDVIGLDKENKAFNASLGTYHDLEKILDKDFLDNPDNESILEDIVQTLTLFEDREMIKKRLENYKDLFTESQLKKLYRRHYTGWGRLSAKLINGIRDKESQKTILDYLIDDGRSNRNFMQLINDDGLSFKSIISKAQAGSHSDNLKEVVGELAGSPAIKKGILQSLKIVDELVKVMGYEPEQIVVEMARENQTTNQGRRNSRQRYKLLDDGVKNLASDLNGNILKEYPTDNQALQNERLFLYYLQNGRDMYTGEALDIDNLSQYDIDHIIPQAFIKDDSIDNRVLVSSAKNRGKSDDVPSLEIVKDCKVFWKKLLDAKLMSQRKYDNLTKAERGGLTSDDKARFIQRQLVETRQITKHVARILDERFNNELDSKGRRIRKVKIVTLKSNLVSNFRKEFGFYKIREVNNYHHAHDAYLNAVVAKAILTKYPQLEPEFVYGDYPKYNSYKTRKSATEKLFFYSNIMNFFKTKVTLADGTVVVKDDIEVNNDTGEIVWDKKKHFATVRKVLSYPQNNIVKKTEIQTGGFSKESILAHGNSDKLIPRKTKDIYLDPKKYGGFDSPIVAYSVLVVADIKKGKAQKLKTVTELLGITIMERSRFEKNPSAFLESKGYLNIRADKLIILPKYSLFELENGRRRLLASAGELQKGNELALPTQFMKFLYLASRYNESKGKPEEIEKKQEFVNQHVSYFDDILQLINDFSKRVILADANLEKINKLYQDNKENISVDELANNIINLFTFTSLGAPAAFKFFDKIVDRKRYTSTKEVLNSTLIHQSITGLYETRIDLGKLGED

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_ALUI01000243_1	1.2\|3050\|21\|NZ_ALUI01000243\|PILER-CR	3050-3070	21	NZ_ALUI01000280.1	23827-23847	0	1.0
NZ_ALUI01000243_1	1.3\|3014\|29\|NZ_ALUI01000243\|CRISPRCasFinder	3014-3042	29	NZ_ALUI01000280.1	23819-23847	0	1.0

1. spacer 1.2|3050|21|NZ_ALUI01000243|PILER-CR matches to position: 23827-23847, mismatch: 0, identity: 1.0

aagaatgaggtctatgctgat	CRISPR spacer
aagaatgaggtctatgctgat	Protospacer
*********************

2. spacer 1.3|3014|29|NZ_ALUI01000243|CRISPRCasFinder matches to position: 23819-23847, mismatch: 0, identity: 1.0

acgtcataaagaatgaggtctatgctgat	CRISPR spacer
acgtcataaagaatgaggtctatgctgat	Protospacer
*****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

11. NZ_ALUI01000280

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage