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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_HG813249 Listeria monocytogenes 6179 4 crisprs cas2,cas1,cas9,csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,DEDDh 8 24 7 7
NZ_HG813250 Listeria monocytogenes 6179 plasmid LM6179, complete sequence 0 crisprs csa3 0 0 1 0

Results visualization

1. NZ_HG813249
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_HG813249_1 49-414 TypeII II-A,II-B
5 spacers
csn2,cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_HG813249_2 774192-774776 Orphan NA
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_HG813249_3 809631-809981 Unclear I-A
5 spacers
cas6,cas8b2,cas7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_HG813249_4 825174-827484 Unclear I-A
35 spacers
cas2,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_HG813249_3 3.3|809789|34|NZ_HG813249|PILER-CR,CRT 809789-809822 34 NZ_HG813249.1 1735051-1735084 0 1.0
NZ_HG813249_3 3.8|809788|35|NZ_HG813249|CRISPRCasFinder 809788-809822 35 NZ_HG813249.1 1735051-1735085 0 1.0
NZ_HG813249_4 4.12|825932|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 825932-825967 36 NZ_HG813249.1 1733355-1733390 0 1.0
NZ_HG813249_4 4.16|826189|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 826189-826222 34 NZ_HG813249.1 1733964-1733997 0 1.0
NZ_HG813249_4 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827226-827262 37 NZ_HG813249.1 1850997-1851033 0 1.0
NZ_HG813249_3 3.4|809853|35|NZ_HG813249|PILER-CR,CRT 809853-809887 35 NZ_HG813249.1 1735586-1735620 1 0.971
NZ_HG813249_3 3.9|809852|36|NZ_HG813249|CRISPRCasFinder 809852-809887 36 NZ_HG813249.1 1735585-1735620 1 0.972
NZ_HG813249_1 1.5|349|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 349-378 30 NZ_HG813249.1 1558002-1558031 2 0.933
NZ_HG813249_3 3.3|809789|34|NZ_HG813249|PILER-CR,CRT 809789-809822 34 NZ_HG813249.1 1561029-1561062 2 0.941
NZ_HG813249_3 3.8|809788|35|NZ_HG813249|CRISPRCasFinder 809788-809822 35 NZ_HG813249.1 1561029-1561063 2 0.943

1. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to position: 1735051-1735084, mismatch: 0, identity: 1.0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

2. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to position: 1735051-1735085, mismatch: 0, identity: 1.0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

3. spacer 4.12|825932|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to position: 1733355-1733390, mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

4. spacer 4.16|826189|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to position: 1733964-1733997, mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

5. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to position: 1850997-1851033, mismatch: 0, identity: 1.0

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgcgtgttcattatcggacatctta	Protospacer
*************************************

6. spacer 3.4|809853|35|NZ_HG813249|PILER-CR,CRT matches to position: 1735586-1735620, mismatch: 1, identity: 0.971

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaact	Protospacer
*******************.***************

7. spacer 3.9|809852|36|NZ_HG813249|CRISPRCasFinder matches to position: 1735585-1735620, mismatch: 1, identity: 0.972

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

8. spacer 1.5|349|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to position: 1558002-1558031, mismatch: 2, identity: 0.933

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattatttattttctcccaaataaaatca	Protospacer
*****.*****.******************

9. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to position: 1561029-1561062, mismatch: 2, identity: 0.941

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgtcatgacgaaatctagcgcttgtccaactaa	Protospacer
***.************************ *****

10. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to position: 1561029-1561063, mismatch: 2, identity: 0.943

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgtcatgacgaaatctagcgcttgtccaactaa	Protospacer
****.************************ *****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 NC_042048 Listeria phage LMTA-34, complete genome 74603-74632 0 1.0
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 NC_024360 Listeria phage LMSP-25, complete genome 74603-74632 0 1.0
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 NZ_CP011399 Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence 4400-4429 0 1.0
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 FW590615 JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME 2528-2557 0 1.0
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 HI504184 Sequence 26 from Patent EP2147092 2528-2557 0 1.0
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 AJ417489 bacteriophage U153 int gene for U153 integrase 2528-2557 0 1.0
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 KJ094022 Listeria phage LP-030-3, complete genome 30296-30325 0 1.0
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 AJ312240 Bacteriophage PSA complete genome 18523-18552 0 1.0
NZ_HG813249_1 1.5|349|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 349-378 30 NZ_LR134403 Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence 225302-225331 0 1.0
NZ_HG813249_1 1.5|349|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 349-378 30 KJ094023 Listeria phage LP-101, complete genome 15775-15804 0 1.0
NZ_HG813249_3 3.3|809789|34|NZ_HG813249|PILER-CR,CRT 809789-809822 34 MT500540 Listeria phage LP-HM00113468, complete genome 26210-26243 0 1.0
NZ_HG813249_3 3.8|809788|35|NZ_HG813249|CRISPRCasFinder 809788-809822 35 MT500540 Listeria phage LP-HM00113468, complete genome 26209-26243 0 1.0
NZ_HG813249_4 4.12|825932|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 825932-825967 36 NC_003216 Listeria phage A118, complete genome 18563-18598 0 1.0
NZ_HG813249_4 4.12|825932|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 825932-825967 36 AJ242593 Bacteriophage A118 complete genome 18563-18598 0 1.0
NZ_HG813249_4 4.16|826189|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 826189-826222 34 NC_003216 Listeria phage A118, complete genome 19172-19205 0 1.0
NZ_HG813249_4 4.16|826189|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 826189-826222 34 AJ242593 Bacteriophage A118 complete genome 19172-19205 0 1.0
NZ_HG813249_4 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827033-827068 36 KP399678 Listeria phage vB_LmoS_293, complete genome 6980-7015 0 1.0
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 MN172529 Listeria phage LP-039, complete genome 59048-59077 1 0.967
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 MT178766 Listeria virus P100plus, complete genome 26020-26049 1 0.967
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 NC_025440 Listeria phage WIL-1, complete genome 106789-106818 1 0.967
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 NC_047872 Listeria phage LMTA-94, complete genome 72338-72367 1 0.967
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 MT178767 Listeria virus P200, complete genome 26020-26049 1 0.967
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 DQ004855 Listeria bacteriophage P100, complete genome 26019-26048 1 0.967
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 KJ591605 Listeria phage LMTA-57, complete genome 83087-83116 1 0.967
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 KJ094033 Listeria phage LP-048, complete genome 61505-61534 1 0.967
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 KJ668715 Listeria phage LMTA-34, partial genome 59201-59230 1 0.967
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 MN128594 Listeria phage LP-066, complete genome 60544-60573 1 0.967
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 KJ094030 Listeria phage LP-083-2, complete genome 65710-65739 1 0.967
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 KJ094031 Listeria phage LP-124, complete genome 27825-27854 1 0.967
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 NC_021539 Listeria phage LP-030-2, complete genome 18331-18360 1 0.967
NZ_HG813249_3 3.2|809725|34|NZ_HG813249|PILER-CR,CRT 809725-809758 34 DQ003642 Listeria phage A006, complete genome 5993-6026 1 0.971
NZ_HG813249_3 3.3|809789|34|NZ_HG813249|PILER-CR,CRT 809789-809822 34 NC_003216 Listeria phage A118, complete genome 20259-20292 1 0.971
NZ_HG813249_3 3.3|809789|34|NZ_HG813249|PILER-CR,CRT 809789-809822 34 AJ242593 Bacteriophage A118 complete genome 20259-20292 1 0.971
NZ_HG813249_3 3.3|809789|34|NZ_HG813249|PILER-CR,CRT 809789-809822 34 X85008 Bacteriophage A118 hol118 and ply118 genes 507-540 1 0.971
NZ_HG813249_3 3.4|809853|35|NZ_HG813249|PILER-CR,CRT 809853-809887 35 DQ003642 Listeria phage A006, complete genome 19079-19113 1 0.971
NZ_HG813249_3 3.7|809724|35|NZ_HG813249|CRISPRCasFinder 809724-809758 35 DQ003642 Listeria phage A006, complete genome 5993-6027 1 0.971
NZ_HG813249_3 3.8|809788|35|NZ_HG813249|CRISPRCasFinder 809788-809822 35 NC_003216 Listeria phage A118, complete genome 20259-20293 1 0.971
NZ_HG813249_3 3.8|809788|35|NZ_HG813249|CRISPRCasFinder 809788-809822 35 AJ242593 Bacteriophage A118 complete genome 20259-20293 1 0.971
NZ_HG813249_3 3.8|809788|35|NZ_HG813249|CRISPRCasFinder 809788-809822 35 X85008 Bacteriophage A118 hol118 and ply118 genes 507-541 1 0.971
NZ_HG813249_3 3.9|809852|36|NZ_HG813249|CRISPRCasFinder 809852-809887 36 DQ003642 Listeria phage A006, complete genome 19078-19113 1 0.972
NZ_HG813249_4 4.6|825528|36|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 825528-825563 36 NZ_CP011399 Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence 60125-60160 1 0.972
NZ_HG813249_4 4.6|825528|36|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 825528-825563 36 NC_009812 Listeria phage B025, complete genome 27503-27538 1 0.972
NZ_HG813249_4 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827033-827068 36 NC_003216 Listeria phage A118, complete genome 6982-7017 1 0.972
NZ_HG813249_4 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827033-827068 36 AJ242593 Bacteriophage A118 complete genome 6982-7017 1 0.972
NZ_HG813249_4 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827033-827068 36 MH341452 Listeria phage PSU-VKH-LP040, complete genome 6993-7028 1 0.972
NZ_HG813249_4 4.31|827161|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827161-827196 36 NC_021539 Listeria phage LP-030-2, complete genome 14044-14079 1 0.972
NZ_HG813249_4 4.31|827161|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827161-827196 36 AJ312240 Bacteriophage PSA complete genome 14022-14057 1 0.972
NZ_HG813249_4 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827226-827262 37 KY705255 Streptococcus phage P0095, complete genome 33666-33702 1 0.973
NZ_HG813249_4 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827226-827262 37 KY705251 Streptococcus phage P0091, complete genome 32778-32814 1 0.973
NZ_HG813249_4 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827226-827262 37 KX879643 Streptococcus phage CHPC1151, complete genome 31697-31733 1 0.973
NZ_HG813249_4 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827226-827262 37 MK202161 Streptococcus phage CHPC1282, complete genome 32484-32520 1 0.973
NZ_HG813249_4 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827226-827262 37 KY705252 Streptococcus phage P0092, complete genome 31845-31881 1 0.973
NZ_HG813249_4 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827226-827262 37 MH937506 Streptococcus phage CHPC1148, complete genome 35552-35588 1 0.973
NZ_HG813249_4 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827226-827262 37 KY705253 Streptococcus phage P0093, complete genome 32631-32667 1 0.973
NZ_HG813249_4 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827226-827262 37 KY705254 Streptococcus phage P0094, complete genome 31034-31070 1 0.973
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 MT438761 Listeria virus P61, complete genome 70795-70824 2 0.933
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 MT668624 Listeria phage LP-Mix_6.2, complete genome 60394-60423 2 0.933
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 DQ003638 Listeria phage A511, complete genome 59585-59614 2 0.933
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 KJ591604 Listeria phage LMTA-148, complete genome 66986-67015 2 0.933
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 MK792752 UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome 80589-80618 2 0.933
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 NC_041862 Listeria phage LP-064, complete genome 69005-69034 2 0.933
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 JX126918 Listeria phage LP-125, complete genome 69007-69036 2 0.933
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 JQ797329 Listeria phage vB_LmoM_AG20, complete genome 58894-58923 2 0.933
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 KJ535721 Listeria phage List-36, complete genome 69453-69482 2 0.933
NZ_HG813249_1 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 151-180 30 FJ147490 Listeria phage 20422-1 unknown genes 607-636 2 0.933
NZ_HG813249_3 3.2|809725|34|NZ_HG813249|PILER-CR,CRT 809725-809758 34 MH341451 Listeria phage PSU-VKH-LP019, complete genome 5984-6017 2 0.941
NZ_HG813249_3 3.2|809725|34|NZ_HG813249|PILER-CR,CRT 809725-809758 34 KP399677 Listeria phage vB_LmoS_188, complete genome 5993-6026 2 0.941
NZ_HG813249_3 3.4|809853|35|NZ_HG813249|PILER-CR,CRT 809853-809887 35 NC_003216 Listeria phage A118, complete genome 20794-20828 2 0.943
NZ_HG813249_3 3.4|809853|35|NZ_HG813249|PILER-CR,CRT 809853-809887 35 AJ242593 Bacteriophage A118 complete genome 20794-20828 2 0.943
NZ_HG813249_3 3.4|809853|35|NZ_HG813249|PILER-CR,CRT 809853-809887 35 X85008 Bacteriophage A118 hol118 and ply118 genes 1042-1076 2 0.943
NZ_HG813249_3 3.4|809853|35|NZ_HG813249|PILER-CR,CRT 809853-809887 35 KJ094023 Listeria phage LP-101, complete genome 19818-19852 2 0.943
NZ_HG813249_3 3.7|809724|35|NZ_HG813249|CRISPRCasFinder 809724-809758 35 MH341451 Listeria phage PSU-VKH-LP019, complete genome 5984-6018 2 0.943
NZ_HG813249_3 3.7|809724|35|NZ_HG813249|CRISPRCasFinder 809724-809758 35 KP399677 Listeria phage vB_LmoS_188, complete genome 5993-6027 2 0.943
NZ_HG813249_3 3.9|809852|36|NZ_HG813249|CRISPRCasFinder 809852-809887 36 NC_003216 Listeria phage A118, complete genome 20793-20828 2 0.944
NZ_HG813249_3 3.9|809852|36|NZ_HG813249|CRISPRCasFinder 809852-809887 36 AJ242593 Bacteriophage A118 complete genome 20793-20828 2 0.944
NZ_HG813249_3 3.9|809852|36|NZ_HG813249|CRISPRCasFinder 809852-809887 36 X85008 Bacteriophage A118 hol118 and ply118 genes 1041-1076 2 0.944
NZ_HG813249_3 3.9|809852|36|NZ_HG813249|CRISPRCasFinder 809852-809887 36 KJ094023 Listeria phage LP-101, complete genome 19817-19852 2 0.944
NZ_HG813249_4 4.6|825528|36|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 825528-825563 36 KJ094023 Listeria phage LP-101, complete genome 27001-27036 2 0.944
NZ_HG813249_4 4.11|825867|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 825867-825902 36 MH341453 Listeria phage PSU-VKH-LP041, complete genome 26132-26167 2 0.944
NZ_HG813249_4 4.17|826252|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 826252-826287 36 KJ094022 Listeria phage LP-030-3, complete genome 38302-38337 2 0.944
NZ_HG813249_4 4.19|826382|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 826382-826417 36 KP399678 Listeria phage vB_LmoS_293, complete genome 1049-1084 2 0.944
NZ_HG813249_4 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827033-827068 36 DQ003637 Listeria phage A500, complete genome 6959-6994 2 0.944
NZ_HG813249_4 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827226-827262 37 MN689509 Lactococcus phage CHPC1175, complete genome 29544-29580 2 0.946
NZ_HG813249_4 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827226-827262 37 MK448735 Streptococcus phage Javan349, complete genome 11483-11519 2 0.946
NZ_HG813249_1 1.5|349|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 349-378 30 MT500540 Listeria phage LP-HM00113468, complete genome 29150-29179 3 0.9
NZ_HG813249_4 4.1|825203|36|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 825203-825238 36 NZ_LR134403 Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence 228347-228382 3 0.917
NZ_HG813249_4 4.18|826317|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 826317-826352 36 MH341453 Listeria phage PSU-VKH-LP041, complete genome 41996-42031 3 0.917
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 NZ_CP026684 Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM2, complete sequence 95843-95872 5 0.833
NZ_HG813249_4 4.18|826317|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 826317-826352 36 KJ094023 Listeria phage LP-101, complete genome 32760-32795 5 0.861
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 KT207918 Bacillus phage Eyuki, complete genome 116456-116485 6 0.8
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 NC_031054 Bacillus phage DirtyBetty, complete genome 116445-116474 6 0.8
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 NZ_CP031070 Bacillus sp. JAS24-2 plasmid pl278, complete sequence 44141-44170 6 0.8
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 MH538193 Bacillus phage Saddex, complete genome 117316-117345 6 0.8
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 MF288919 Bacillus phage AaronPhadgers, complete genome 115968-115997 6 0.8
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 MG763894 Bacillus phage HonestAbe, complete genome 116215-116244 6 0.8
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 NC_031116 Bacillus phage Zuko, complete genome 117017-117046 6 0.8
NZ_HG813249_4 4.15|826126|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 826126-826159 34 NC_022111 Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence 1764851-1764884 6 0.824
NZ_HG813249_4 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827033-827068 36 KJ094022 Listeria phage LP-030-3, complete genome 15373-15408 6 0.833
NZ_HG813249_4 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827292-827326 35 MN694189 Marine virus AFVG_250M578, complete genome 47879-47913 6 0.829
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 KX961629 Bacillus phage BJ4, complete genome 115259-115288 7 0.767
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 NC_031070 Bacillus phage Nemo, complete genome 116990-117019 7 0.767
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 MF288920 Bacillus phage Zainny, complete genome 116438-116467 7 0.767
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 KJ489399 Bacillus phage Hakuna, complete genome 114490-114519 7 0.767
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 NC_031027 Bacillus phage SageFayge, complete genome 115953-115982 7 0.767
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 KX349902 Bacillus phage Kida, complete genome 116180-116209 7 0.767
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 KX156152 Bacillus phage Smudge, complete genome 116059-116088 7 0.767
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 KJ489401 Bacillus phage Megatron, complete genome 115838-115867 7 0.767
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 MN038179 Bacillus phage ALPS, complete genome 116242-116271 7 0.767
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 MH638311 Bacillus phage OmnioDeoPrimus, complete genome 115905-115934 7 0.767
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 MF288918 Bacillus phage Bubs, complete genome 117020-117049 7 0.767
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 KX961632 Bacillus phage SBP8a, complete genome 115649-115678 7 0.767
NZ_HG813249_1 1.5|349|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 349-378 30 MG592459 Vibrio phage 1.084.O._10N.261.49.F5, partial genome 30611-30640 7 0.767
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 NZ_CP016726 Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08A, complete sequence 53675-53704 8 0.733
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 NZ_CP023393 Lactococcus raffinolactis strain WiKim0068 plasmid pWiKim0068-1, complete sequence 30092-30121 8 0.733
NZ_HG813249_1 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT 217-246 30 NZ_CP034167 Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-3, complete sequence 117743-117772 9 0.7
NZ_HG813249_3 3.7|809724|35|NZ_HG813249|CRISPRCasFinder 809724-809758 35 NZ_CP045351 Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence 1102881-1102915 9 0.743
NZ_HG813249_4 4.15|826126|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 826126-826159 34 NZ_CP038863 Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence 39302-39335 9 0.735
NZ_HG813249_4 4.20|826447|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 826447-826481 35 NC_014533 Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence 491525-491559 9 0.743
NZ_HG813249_4 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827292-827326 35 MK448625 Streptococcus satellite phage Javan738, complete genome 5960-5994 9 0.743
NZ_HG813249_4 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827292-827326 35 MK448449 Streptococcus satellite phage Javan356, complete genome 4490-4524 9 0.743
NZ_HG813249_4 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827292-827326 35 MK448636 Streptococcus satellite phage Javan749, complete genome 6112-6146 9 0.743
NZ_HG813249_4 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827292-827326 35 NZ_CP045037 Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence 34734-34768 9 0.743
NZ_HG813249_4 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827292-827326 35 NZ_CP018177 Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence 11325-11359 9 0.743
NZ_HG813249_4 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827292-827326 35 NZ_CP018181 Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence 63608-63642 9 0.743
NZ_HG813249_3 3.2|809725|34|NZ_HG813249|PILER-CR,CRT 809725-809758 34 MK044828 Streptococcus phage 33888, complete genome 5436-5469 10 0.706
NZ_HG813249_4 4.30|827098|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR 827098-827131 34 NZ_CP034816 Paracoccus sp. Arc7-R13 plasmid unnamed6, complete sequence 26153-26186 11 0.676

1. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 0, identity: 1.0

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatacaggttaggaagtaaactccttgta	Protospacer
******************************

2. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 0, identity: 1.0

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatacaggttaggaagtaaactccttgta	Protospacer
******************************

3. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

4. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to FW590615 (JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

5. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to HI504184 (Sequence 26 from Patent EP2147092) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

6. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to AJ417489 (bacteriophage U153 int gene for U153 integrase) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

7. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

8. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

9. spacer 1.5|349|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 0, identity: 1.0

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattgtttatcttctcccaaataaaatca	Protospacer
******************************

10. spacer 1.5|349|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattgtttatcttctcccaaataaaatca	Protospacer
******************************

11. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

12. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

13. spacer 4.12|825932|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

14. spacer 4.12|825932|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

15. spacer 4.16|826189|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

16. spacer 4.16|826189|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

17. spacer 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaaccacctcgatttc	Protospacer
************************************

18. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

19. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

20. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

21. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

22. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

23. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

24. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

25. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

26. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ668715 (Listeria phage LMTA-34, partial genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

27. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

28. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

29. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

30. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.967

cttaaagttgtcaacttctattttttatat-	CRISPR spacer
cttaaagttgtcaacttcta-tttttatata	Protospacer
******************** ********* 

31. spacer 3.2|809725|34|NZ_HG813249|PILER-CR,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.971

ctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
ctgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
***************************.******

32. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.971

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
*******************************.**

33. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.971

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
*******************************.**

34. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 1, identity: 0.971

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
*******************************.**

35. spacer 3.4|809853|35|NZ_HG813249|PILER-CR,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.971

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcggggatggggaaaacg	Protospacer
********************************** 

36. spacer 3.7|809724|35|NZ_HG813249|CRISPRCasFinder matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.971

tctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tctgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
****************************.******

37. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

38. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

39. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

40. spacer 3.9|809852|36|NZ_HG813249|CRISPRCasFinder matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.972

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcggggatggggaaaacg	Protospacer
*********************************** 

41. spacer 4.6|825528|36|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 1, identity: 0.972

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgatttttcgtagcccaattgctaaa	Protospacer
************.***********************

42. spacer 4.6|825528|36|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.972

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgatttttcgtagcccaattgctaaa	Protospacer
************.***********************

43. spacer 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctcgatttc	Protospacer
***********************.************

44. spacer 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctcgatttc	Protospacer
***********************.************

45. spacer 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcattaaaccacctcgatttc	Protospacer
*******************.****************

46. spacer 4.31|827161|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.972

acgtttgcggtagttttaccgggcacggtcaaatat	CRISPR spacer
acgttcgcggtagttttaccgggcacggtcaaatat	Protospacer
*****.******************************

47. spacer 4.31|827161|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 1, identity: 0.972

acgtttgcggtagttttaccgggcacggtcaaatat	CRISPR spacer
acgttcgcggtagttttaccgggcacggtcaaatat	Protospacer
*****.******************************

48. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KY705255 (Streptococcus phage P0095, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

49. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KY705251 (Streptococcus phage P0091, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

50. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KX879643 (Streptococcus phage CHPC1151, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

51. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MK202161 (Streptococcus phage CHPC1282, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

52. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KY705252 (Streptococcus phage P0092, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

53. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MH937506 (Streptococcus phage CHPC1148, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

54. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KY705253 (Streptococcus phage P0093, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

55. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KY705254 (Streptococcus phage P0094, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

56. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

57. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

58. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

59. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

60. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

61. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

62. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

63. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

64. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ535721 (Listeria phage List-36, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

65. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to FJ147490 (Listeria phage 20422-1 unknown genes) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

66. spacer 3.2|809725|34|NZ_HG813249|PILER-CR,CRT matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 2, identity: 0.941

ctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
ccgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
*.*************************.******

67. spacer 3.2|809725|34|NZ_HG813249|PILER-CR,CRT matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 2, identity: 0.941

ctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
ccgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
*.*************************.******

68. spacer 3.4|809853|35|NZ_HG813249|PILER-CR,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 2, identity: 0.943

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaacg	Protospacer
*******************.************** 

69. spacer 3.4|809853|35|NZ_HG813249|PILER-CR,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 2, identity: 0.943

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaacg	Protospacer
*******************.************** 

70. spacer 3.4|809853|35|NZ_HG813249|PILER-CR,CRT matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 2, identity: 0.943

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaacg	Protospacer
*******************.************** 

71. spacer 3.4|809853|35|NZ_HG813249|PILER-CR,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.943

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgattgcggggatggggaaaacg	Protospacer
***************** **************** 

72. spacer 3.7|809724|35|NZ_HG813249|CRISPRCasFinder matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 2, identity: 0.943

tctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tccgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
**.*************************.******

73. spacer 3.7|809724|35|NZ_HG813249|CRISPRCasFinder matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 2, identity: 0.943

tctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tccgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
**.*************************.******

74. spacer 3.9|809852|36|NZ_HG813249|CRISPRCasFinder matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaacg	Protospacer
********************.************** 

75. spacer 3.9|809852|36|NZ_HG813249|CRISPRCasFinder matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaacg	Protospacer
********************.************** 

76. spacer 3.9|809852|36|NZ_HG813249|CRISPRCasFinder matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaacg	Protospacer
********************.************** 

77. spacer 3.9|809852|36|NZ_HG813249|CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgattgcggggatggggaaaacg	Protospacer
****************** **************** 

78. spacer 4.6|825528|36|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.944

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgattttttgtagcccaattgctaaa	Protospacer
************.*****.*****************

79. spacer 4.11|825867|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 2, identity: 0.944

gtccacatcgacaataaaaaacacattgtatcactt	CRISPR spacer
gtccacattgacaacaaaaaacacattgtatcactt	Protospacer
********.*****.*********************

80. spacer 4.17|826252|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.944

ttgttcgacggcttagacaaccatcacgcttcttta	CRISPR spacer
cttttcgacggcttagacaaccatcacgcttcttta	Protospacer
.* *********************************

81. spacer 4.19|826382|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 2, identity: 0.944

ctcataaggatttcgaggcgggttaaacgacatgta	CRISPR spacer
ctcataaggattgcgaggcgggttaaatgacatgta	Protospacer
************ **************.********

82. spacer 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 2, identity: 0.944

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctctatttc	Protospacer
***********************.****** *****

83. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MN689509 (Lactococcus phage CHPC1175, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaaccgagaacgtgtgttcattatcggacatctta	Protospacer
****** *******.**********************

84. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MK448735 (Streptococcus phage Javan349, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgggtgttcattgtcggacatctta	Protospacer
************** *********.************

85. spacer 1.5|349|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 3, identity: 0.9

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattgtttattttctcccagataaaatcg	Protospacer
***********.********.********.

86. spacer 4.1|825203|36|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 3, identity: 0.917

aaagaccttcgatttcattctcactttccagttaat	CRISPR spacer
gaaaaccttcgatttcattcttactttccagttaat	Protospacer
.**.*****************.**************

87. spacer 4.18|826317|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 3, identity: 0.917

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
tataaaatattgtccaatgtgtggaaggagtttggg	Protospacer
************.********.*************.

88. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026684 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM2, complete sequence) position: , mismatch: 5, identity: 0.833

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaaattttcaacttctattttttctct	Protospacer
 *****.** **************** * *

89. spacer 4.18|826317|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 5, identity: 0.861

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
cattgaattttgcccaatgtgcggaaggagcttgga	Protospacer
.** .*** *********************.*****

90. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KT207918 (Bacillus phage Eyuki, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactattttttaagg	Protospacer
 ***** ********* ********** . 

91. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_031054 (Bacillus phage DirtyBetty, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactattttttaagg	Protospacer
 ***** ********* ********** . 

92. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031070 (Bacillus sp. JAS24-2 plasmid pl278, complete sequence) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cctcattatgtcaatttctattttttatat	Protospacer
*.* *   ******.***************

93. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MH538193 (Bacillus phage Saddex, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaaggt	Protospacer
 ***** ********* ******** * .*

94. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MF288919 (Bacillus phage AaronPhadgers, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaaggt	Protospacer
 ***** ********* ******** * .*

95. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MG763894 (Bacillus phage HonestAbe, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaaggt	Protospacer
 ***** ********* ******** * .*

96. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_031116 (Bacillus phage Zuko, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaaggt	Protospacer
 ***** ********* ******** * .*

97. spacer 4.15|826126|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.824

agaaaaaaaacatctttccaatttgttgttttgc	CRISPR spacer
agcaaaaaaacatctttcctatttgttttatcac	Protospacer
** **************** ******* * *..*

98. spacer 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 6, identity: 0.833

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
tattaactttaatcggcatcaaaccacctctatctc	Protospacer
.*.  ************************* **.**

99. spacer 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 6, identity: 0.829

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
taataaaaaatgagggcttagaaaatgaaaaaatt	Protospacer
*  *.*** ******.***************** *

100. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KX961629 (Bacillus phage BJ4, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * . 

101. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_031070 (Bacillus phage Nemo, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * . 

102. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MF288920 (Bacillus phage Zainny, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * . 

103. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ489399 (Bacillus phage Hakuna, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * . 

104. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_031027 (Bacillus phage SageFayge, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * . 

105. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KX349902 (Bacillus phage Kida, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * . 

106. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KX156152 (Bacillus phage Smudge, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * . 

107. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ489401 (Bacillus phage Megatron, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * . 

108. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MN038179 (Bacillus phage ALPS, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * . 

109. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MH638311 (Bacillus phage OmnioDeoPrimus, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * . 

110. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MF288918 (Bacillus phage Bubs, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * . 

111. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KX961632 (Bacillus phage SBP8a, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * . 

112. spacer 1.5|349|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MG592459 (Vibrio phage 1.084.O._10N.261.49.F5, partial genome) position: , mismatch: 7, identity: 0.767

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tattcatttatctcctcctaaataaaatcc	Protospacer
*  *..*******.****.********** 

113. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016726 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08A, complete sequence) position: , mismatch: 8, identity: 0.733

cttaaagttgtcaacttctattttttatat	CRISPR spacer
tatcttgttctcaccttctattttttataa	Protospacer
. *   *** *** *************** 

114. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023393 (Lactococcus raffinolactis strain WiKim0068 plasmid pWiKim0068-1, complete sequence) position: , mismatch: 8, identity: 0.733

cttaaagttgtcaacttctattttttatat	CRISPR spacer
tatcttgttctcaccttctattttttataa	Protospacer
. *   *** *** *************** 

115. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034167 (Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-3, complete sequence) position: , mismatch: 9, identity: 0.7

cttaaagttgtcaacttctattttttatat	CRISPR spacer
agaggagttgtcaaattctatttttttatt	Protospacer
   ..********* ***********   *

116. spacer 3.7|809724|35|NZ_HG813249|CRISPRCasFinder matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 9, identity: 0.743

tctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tccgtaaaatcaaaagtatcatcgattttatgata	Protospacer
**.******************* **  . **  * 

117. spacer 4.15|826126|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

agaaaaaaaacatctttccaatttgttgttttgc-----	CRISPR spacer
aagaaaaaaacatatttccaatt-----ttttccaaaaa	Protospacer
*..********** *********     **** *     

118. spacer 4.20|826447|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 9, identity: 0.743

gcttttttcaacaattttatcaccagatgtcatta	CRISPR spacer
agttttttcaacaattttatgaacagataattttt	Protospacer
. ****************** * *****. . ** 

119. spacer 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MK448625 (Streptococcus satellite phage Javan738, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*    

120. spacer 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*    

121. spacer 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtctgaactatgaggacttagaaagtgaagacctg	Protospacer
 *.**** ****************.****.*    

122. spacer 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *  

123. spacer 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *  

124. spacer 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *  

125. spacer 3.2|809725|34|NZ_HG813249|PILER-CR,CRT matches to MK044828 (Streptococcus phage 33888, complete genome) position: , mismatch: 10, identity: 0.706

ctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tgggaaaatcaaaagtatcaaagtaacagatgta	Protospacer
. * **************** ** ****. . * 

126. spacer 4.30|827098|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034816 (Paracoccus sp. Arc7-R13 plasmid unnamed6, complete sequence) position: , mismatch: 11, identity: 0.676

caagatatgctagaaatggcgcaaatagcgcgcg	CRISPR spacer
gtccggctgcttgaaatggcgcagatagcgcgtc	Protospacer
    .  **** ***********.********. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 406594 : 413119 10 Listeria_phage(33.33%) tail NA
DBSCAN-SWA_2 1400310 : 1407733 8 Hokovirus(33.33%) NA NA
DBSCAN-SWA_3 1496866 : 1600633 112 Listeria_phage(79.37%) capsid,transposase,portal,integrase,tRNA,holin,terminase,tail,protease attL 1504142:1504158|attR 1543291:1543307
DBSCAN-SWA_4 1679052 : 1739750 83 Listeria_phage(86.96%) capsid,portal,integrase,holin,plate,terminase,tail attL 1695594:1695609|attR 1717392:1717407
DBSCAN-SWA_5 1841141 : 1879982 60 Listeria_phage(94.44%) holin,terminase,tail,integrase attL 1828504:1828518|attR 1842647:1842661
DBSCAN-SWA_6 1899109 : 1944379 41 Bacillus_virus(23.08%) transposase,protease,tRNA NA
DBSCAN-SWA_7 2454180 : 2462466 8 Synechococcus_phage(33.33%) NA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_HG813249.1|WP_003731276.1|1563735_1563987_-|hypothetical-protein 1563735_1563987_- 83 aa aa AcrIIA12 NA NA 1496866-1600633 yes
NZ_HG813249.1|WP_003770002.1|1702662_1702848_+|hypothetical-protein 1702662_1702848_+ 61 aa aa NA HTH_XRE NA 1679052-1739750 yes
NZ_HG813249.1|WP_046155079.1|1702807_1703119_-|hypothetical-protein 1702807_1703119_- 103 aa aa NA HTH_XRE NA 1679052-1739750 yes
NZ_HG813249.1|WP_003747290.1|1701172_1701391_-|hypothetical-protein 1701172_1701391_- 72 aa aa NA HTH_XRE NA 1679052-1739750 yes
NZ_HG813249.1|WP_012582373.1|1701446_1701614_-|hypothetical-protein 1701446_1701614_- 55 aa aa NA HTH_XRE NA 1679052-1739750 yes
NZ_HG813249.1|WP_003733687.1|1845012_1845207_+|hypothetical-protein 1845012_1845207_+ 64 aa aa NA HTH_XRE NA 1841141-1879982 yes
NZ_HG813249.1|WP_003733686.1|1845218_1845503_+|hypothetical-protein 1845218_1845503_+ 94 aa aa NA HTH_XRE NA 1841141-1879982 yes
2. NZ_HG813250
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 42353 : 51343 10 Cronobacter_phage(16.67%) protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage