CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_HG813250	Listeria monocytogenes 6179 plasmid LM6179, complete sequence	0 crisprs	csa3	0	0	1	0
NZ_HG813249	Listeria monocytogenes 6179	4 crisprs	cas2,cas1,cas9,csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,DEDDh	8	24	7	7

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

42353 : 51343

Cronobacter_phage(16.67%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728507.1\|42353_44468_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	3.4e-117	39.1
WP_003728509.1\|44895_45132_-	helix-turn-helix transcriptional regulator	A0A097PBE6	Streptococcus_pyogenes_phage	6.7e-14	53.4
WP_003731679.1\|45094_45373_+	hypothetical protein	NA	NA	NA	NA
WP_003728510.1\|45492_45720_-	hypothetical protein	NA	NA	NA	NA
WP_003728511.1\|45709_46318_-	recombinase family protein	A0A1W5LU24	Ralstonia_phage	1.0e-21	42.9
WP_096832442.1\|46531_48709_-	ATP-binding protein	A0A1B1IUG5	uncultured_Mediterranean_phage	1.2e-19	25.0
WP_031669356.1\|49311_49800_-	hypothetical protein	NA	NA	NA	NA
WP_003769263.1\|49958_50336_-	DUF3850 domain-containing protein	C9E2N9	Enterococcus_phage	2.2e-14	55.1
WP_003731676.1\|50354_51017_-	DUF2786 domain-containing protein	NA	NA	NA	NA
WP_031641563.1\|51016_51343_-	hypothetical protein	A0A2K9V3N4	Faecalibacterium_phage	3.2e-06	40.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_HG813249

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CRISPR-Cas detection and classification

Crispr_ID: NZ_HG813249_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_HG813249_1

49-414

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRT

5 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_HG813249_1

>merge|NZ_HG813249|1|49-414|PILER-CR,CRISPRCasFinder,CRT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAAGCTAATGCGGTTATCTTTCGTAAGGTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTATACAGGTTAGGAAGTAAACTCCTTGTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCTTAAAGTTGTCAACTTCTATTTTTTATATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAAAAACGTATCAAAAGGCACTGTCGCGATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCATTGTTTATCTTCTCCCAAATAAAATCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_HG813249|1|1|49-414|PILER-CR
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGCTAATGCGGTTATCTTTCGTAAGGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTATACAGGTTAGGAAGTAAACTCCTTGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTTAAAGTTGTCAACTTCTATTTTTTATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAAAAACGTATCAAAAGGCACTGTCGCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATTGTTTATCTTCTCCCAAATAAAATCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_HG813249|1|1|49-414|CRISPRCasFinder
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGCTAATGCGGTTATCTTTCGTAAGGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTATACAGGTTAGGAAGTAAACTCCTTGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTTAAAGTTGTCAACTTCTATTTTTTATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAAAAACGTATCAAAAGGCACTGTCGCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATTGTTTATCTTCTCCCAAATAAAATCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_HG813249|1|1|49-414|CRT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGCTAATGCGGTTATCTTTCGTAAGGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTATACAGGTTAGGAAGTAAACTCCTTGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTTAAAGTTGTCAACTTCTATTTTTTATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAAAAACGTATCAAAAGGCACTGTCGCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATTGTTTATCTTCTCCCAAATAAAATCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_HG813249.1\|WP_003727703.1\|9517_9955_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_HG813249.1\|WP_003733028.1\|1532_2399_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_HG813249.1\|WP_003733027.1\|1194_1536_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_HG813249.1\|WP_015455273.1\|10149_10896_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_HG813249.1\|WP_031669209.1\|2399_6404_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_HG813249.1\|WP_003749666.1\|9103_9496_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_HG813249.1\|WP_003733030.1\|6928_7417_-\|hypothetical-protein	unknown	unknown	unknown
NZ_HG813249.1\|WP_031669208.1\|542_1205_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_HG813249.1\|WP_003733031.1\|7426_8812_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368093
NZ_HG813249.1\|WP_010959067.1\|10901_11699_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692

Protein	Function_ID	Function_description	E-value
NZ_HG813249.1\|WP_003727703.1\|9517_9955_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.08607e-102
NZ_HG813249.1\|WP_003733028.1\|1532_2399_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.96005e-130
NZ_HG813249.1\|WP_003733027.1\|1194_1536_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.15214e-45
NZ_HG813249.1\|WP_015455273.1\|10149_10896_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.93371e-127
NZ_HG813249.1\|WP_031669209.1\|2399_6404_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_HG813249.1\|WP_003749666.1\|9103_9496_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	6.78953e-84
NZ_HG813249.1\|WP_031669208.1\|542_1205_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.3156e-114
NZ_HG813249.1\|WP_003733031.1\|7426_8812_-\|hypothetical-protein	gnl\|CDD\|368093	pfam04740, LXG, LXG domain of WXG superfamily. This domain is present is the N-terminal region of a group of polymorphic toxin proteins in bacteria. It is predicted to use Type VII secretion pathway to mediate export of bacterial toxins.	5.37469e-18
NZ_HG813249.1\|WP_010959067.1\|10901_11699_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	4.19414e-53

>NZ_HG813249.1|WP_031669208.1|542_1205_-|type-II-A-CRISPR-associated-protein-Csn2
MNFNFKLLDEPITIEDSTIFVIEDVRVFANVAKLFYQYDETEELKVFNTKQHPLKSSELMLVTDILGHDINSAATLKLIYTDLEQQLNEKPKVKSMIDKLTATISELIGYELLEHELDLEEDEITVIELFKALGIKIETKSDTVFEKLIEIVQVYKYLSKKKLLVLINVCSYLTEEELLELRRYISLYQVKVLFIEPRKIKGSPQVTLDSDYFLHVENSV
>NZ_HG813249.1|WP_003733027.1|1194_1536_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMLLMFDMPTDTAKERKAYRQFRRFILSEGFIMHQYSVYSKILLNGTASKAMLARLKQQNPKKGLITLLTVTEKQFARMVYLSGEQNKSVGNSDARLIFLGDAIDEF
>NZ_HG813249.1|WP_003733028.1|1532_2399_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVVVNSHSKLSYKNQHLVFKSAYQHEMIHLSEIDVLILETTDITLTTMLINCLVAENILILFCDDKRLPIGKVLPFYGRHDSSLQLSKQLGWDSELKSEVWTEIISQKILNQSTFLSMLNYDEKADSLIKLHETLEIFDPTNREGHAARIYFNQLFGNDFTREQENDINSGLNYGYTLLLSIFARELVKSGCMTQFGLKHSNQFNDFNFASDIMEPFRPLVDQIVYEKRNEDFQVIKRSLFELFNKQFDYNDQHMFLTNIASDYTKKIVKVLNEEREGVPEFRI
>NZ_HG813249.1|WP_031669209.1|2399_6404_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKKPYTIGLDIGTNSVGWAVLTDQYDLVKRKMKISGDSEKKQIKKNFWGVRLFEKGETAAKRRMSRTARRRIERRRNRISYLQEIFAIQMNEVDDNFFNRLKESFYAESDKKYNRHPFFGTVEEEVAYYKDFPTIYHLRKELIDSQKKADLRLVYLALAHIIKYRGHFLIEGALDTKNTSIDEMFKQFLQIYNQVFANDIEEASLKKTEKNQEVAQILAEKFTRKDKLDKILSLYPGEKTTGVFAQFVNIIVGSTGKFKKHFNLHEKKDINCAEDTYDTDLESLLAIIGDEFAEVFVAAKNAYNAVVLSNIITVTDSTTRAKLSASLIERFENHKEDLKKMKRFVRTYLPEKYDEIFDDTEKHGYAGYISGKTKQADFYKYMKATLEKIEGADYFIAKIEEENFLRKQRTFDNGVIPHQLHLEELEAILHQQAKYYPFLREDYEKIKSLVTFRIPYFVGPLAKGQSEFAWLTRKADGEIRPWNIEEKVDFGKSAVDFIEKMTNKDTYLPKENVLPKHSLCYQKYMVYNELTKVRYIDDQGKTNYFSGQEKQQIFNDLFKQKRKVKKKDLELFLRNINQIESPTIEGLEDSFNASYATYHDLLKVGMKQEILDNPLNTEMLEDIVKILTVFEDKRMIKEQLQQFSDVLDGTVLKKLERRHYTGWGRLSAKLLVGIRDKQSHLTILDYLMNDDGLNRNLMQLINDSNLSFKSIIEKEQVSTADKDLQSIVADLAGSPAIKKGILQSLKIVDELVSVMGYPPQTIVVEMARENQTTNKGKNNSKPRYKSLEKAIKEFGSQILKEHPTDNQELKNNRLYLYYLQNGKDMYTGQELDIHNLSNYDIDHIVPQSFITDNSVDNLVLTSSAGNREKGDNVPPLEIVQKRKIFWEKLYQGNLMSKRKFDYLTKAERGGLTEADKARFIHRQLVETRQITKNVANILHQRFNYKTDGNKDTMETVRIVTLKSALVSQFRKQFQFYKVREVNDYHHAHDAYLNGVVANTLLKVYPQLEPEFVYGEYHQFDWFKANKATAKKQFYTNIMLFFAQKDRIIDENGEILWDKRYLETVKKVLGYRQMNIVKKTEIQKGEFSNVTPNPKGKSNKLIPRKKDWDPIKYGGFDGSKMAYAIIIEYEKQKRKVRIEKKLIQINIMEREAFEKDEKTFLEEKGYHQPKVLIKVPKYTLYECENGRRRMLGSANEAHKGNQMLLPNHLMALLYHAEKYEAIDGESLAYIEVHRALFDELLAYISEFARKYTLSNDRLDEINMLYERNKDGDVKSIAESFVSLKKFNAFGVHQDFSFFGTKIERKRDRKLNELLNSTIIYQSITGLYESRKRLDN
>NZ_HG813249.1|WP_003733030.1|6928_7417_-|hypothetical-protein
MKEDILAVYKKFEINNLNMFFDDLIEYVNKYYTVFSKYISLDYLDAITRLDSTSLILGHSDDNFEIAIPFYTNKVIEGLNEEELSNQVSSLIWDLSAYMTEELCPSCNDSNLRLTTMVSREDTLVKFCDECLYTGIRNERVEIEEDLVPAPKKKVEEYLRGK
>NZ_HG813249.1|WP_003733031.1|7426_8812_-|hypothetical-protein
MSRIDIAELNEFLHNLKSSNDEARRMLGKMQEVTNAYATDTSLKGKAIETSQAYFDQTYSVICKSLIEALDESEERLERYIREFGEQVDSSYNARIDAEMLQEAIFRLAEIKRKQEDLLQRMSASTGTLHEGEQQRLRTQFTDALEQEKILERYIAFEQSHGRFFDSFSELVYCAGKAVRELAANVTFNSQTGTYDIGKLDTNKFHALQKFLPKKKKYNFNEYEIRWNGAAHILLRGDVVDAEATAAYNDAVAKGELPKVSNQATESAEEINAVVNALKKGQDPITGQEISKAQSFGIAIGLVYMYVGGKYKGRKIKLPKNALENLEKQQAFKDKEVGGADIPNPNVGIVQSRVNLAENPTRFSPSKNAGMKHVRNRHYNPSKNAGQFTIPESDLKNILQSKQVVNTPVKQIESGDFERVIDIGKNMGTVKPSLGGQTTTWIKVITDKAGNIITTYPVPKP
>NZ_HG813249.1|WP_003749666.1|9103_9496_-|30S-ribosomal-protein-S9
MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVRGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDSRMKERKKPGLKGARRAPQFSKR
>NZ_HG813249.1|WP_003727703.1|9517_9955_-|50S-ribosomal-protein-L13
MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQQPEVYELRG
>NZ_HG813249.1|WP_015455273.1|10149_10896_-|tRNA-pseudouridine(38-40)-synthase-TruA
MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRVTASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDILKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQGLYLWRVDYE
>NZ_HG813249.1|WP_010959067.1|10901_11699_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFAYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLTNGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLLRWRFADTFLLISLAVLSGLLFWLRS

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Crispr_ID: NZ_HG813249_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_HG813249_2

774192-774776

Orphan

Consensus_repeat	Method
GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	CRT

7 spacers

The CRISPR arrays of NZ_HG813249_2

>merge|NZ_HG813249|2|774192-774776|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATGTGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTGGATGTAAGTCATTTTGATACGAGTTCAGTAACTAATATGTCTTACATGTTTTATGATAATAGAAACCTTGAGGTGCTGGATGTAAGCAACCTTGATACCGGTTCAGTAACTAATATGTATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTGGATGTAAGTAATTTTGATACGAGTTCAGTAACTGATATGTATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTAGATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATGGTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTGGATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATGCGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTAGATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATGGCTGCCATGTTTTCTGATAATGAAAAACTGGAGAAGCTTGATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

>NZ_HG813249|2|2|774192-774776|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATG	TGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTG
GATGTAAGTCATTTTGATACGAGTTCAGTAACTAATATG	TCTTACATGTTTTATGATAATAGAAACCTTGAGGTGCTG
GATGTAAGCAACCTTGATACCGGTTCAGTAACTAATATG	TATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTG
GATGTAAGTAATTTTGATACGAGTTCAGTAACTGATATG	TATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTA
GATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATG	GTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTG
GATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATG	CGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTA
GATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATG	GCTGCCATGTTTTCTGATAATGAAAAACTGGAGAAGCTT
GATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_HG813249.1\|WP_038409712.1\|778147_778516_+\|hypothetical-protein	unknown	unknown	unknown
NZ_HG813249.1\|WP_031669155.1\|758529_760689_-\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NZ_HG813249.1\|WP_003728991.1\|765954_767055_+\|DUF917-domain-containing-protein	unknown	unknown	gnl\|CDD\|226065
NZ_HG813249.1\|WP_003733328.1\|777056_777323_+\|hypothetical-protein	unknown	unknown	unknown
NZ_HG813249.1\|WP_031669156.1\|769225_770764_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|368260
NZ_HG813249.1\|WP_015454177.1\|761838_762786_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_HG813249.1\|WP_003721261.1\|780210_780558_+\|hypothetical-protein	unknown	unknown	unknown
NZ_HG813249.1\|WP_003721260.1\|779910_780183_+\|hypothetical-protein	unknown	unknown	unknown
NZ_HG813249.1\|WP_031669159.1\|776675_776981_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NZ_HG813249.1\|WP_015454185.1\|776162_776648_+\|hypothetical-protein	unknown	unknown	unknown
NZ_HG813249.1\|WP_003721256.1\|777862_778147_+\|DUF3130-domain-containing-protein	unknown	unknown	gnl\|CDD\|288220
NZ_HG813249.1\|WP_003721244.1\|764670_765954_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NZ_HG813249.1\|WP_003721239.1\|757657_758413_-\|DUF4866-family-protein	unknown	unknown	gnl\|CDD\|379782
NZ_HG813249.1\|WP_003733213.1\|780961_781204_+\|hypothetical-protein	unknown	unknown	unknown
NZ_HG813249.1\|WP_077418270.1\|771362_773399_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_HG813249.1\|WP_015455545.1\|767047_768598_+\|hydantoinase/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223223
NZ_HG813249.1\|WP_031668867.1\|781286_782264_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
NZ_HG813249.1\|WP_009925652.1\|762941_764537_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NZ_HG813249.1\|WP_015454176.1\|760685_761834_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_HG813249.1\|WP_015454184.1\|775669_776143_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_HG813249.1\|WP_031669155.1\|758529_760689_-\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	1.96033e-27
NZ_HG813249.1\|WP_003728991.1\|765954_767055_+\|DUF917-domain-containing-protein	gnl\|CDD\|226065	COG3535, COG3535, Uncharacterized conserved protein [Function unknown].	0
NZ_HG813249.1\|WP_031669156.1\|769225_770764_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	1.01277e-18
NZ_HG813249.1\|WP_015454177.1\|761838_762786_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	5.42287e-102
NZ_HG813249.1\|WP_031669159.1\|776675_776981_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	1.60706e-05
NZ_HG813249.1\|WP_003721256.1\|777862_778147_+\|DUF3130-domain-containing-protein	gnl\|CDD\|288220	pfam11328, DUF3130, Protein of unknown function (DUF3130. This bacterial family of proteins has no known function.	4.16867e-42
NZ_HG813249.1\|WP_003721244.1\|764670_765954_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	6.12636e-95
NZ_HG813249.1\|WP_003721239.1\|757657_758413_-\|DUF4866-family-protein	gnl\|CDD\|379782	pfam16160, DUF4866, Domain of unknown function (DUF4866). This family consists of uncharacterized proteins around 250 residues in length and is mainly found in various human gut Firmicute species and abundant in human gut metagenomic datasets. The function of this family is unknown.	1.0462e-120
NZ_HG813249.1\|WP_077418270.1\|771362_773399_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	4.4286e-32
NZ_HG813249.1\|WP_015455545.1\|767047_768598_+\|hydantoinase/oxoprolinase-family-protein	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	2.41284e-105
NZ_HG813249.1\|WP_031668867.1\|781286_782264_-\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	2.28799e-45
NZ_HG813249.1\|WP_009925652.1\|762941_764537_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.65795e-59
NZ_HG813249.1\|WP_015454176.1\|760685_761834_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	2.26435e-52

>NZ_HG813249.1|WP_077418270.1|771362_773399_+|BspA-family-leucine-rich-repeat-surface-protein
MFGNVPSSKPSAWNGYLNRINHIEIEEATLTGDFESYFRSNVFLALESVRIERSNLSGVTSFANAFYASRAEKIIIKDNDYPTASSLLTTENMFKYCSSLTELDVSGLDTSAVTNMTEMFYGCNALKELDASNFDTSSVTDMNSMFISCSALEKLDVSNFDTSSVTDMNSMFRGCSALKKLDASNFDTSSVTNMNNMFFACASLEELNASNFDTSSVTDMNSMFRYCNKLKKLDISNFDTSSVTDMNSMFRTCSALERVDVSNFDTSSVTDMNRMFDECKSLEILDVSNFDTNSVTDMGYMFYENEKLKKLDLSNFDTSSVTDMSFMFFQCTGLEELDVSNFDTNSVTNMSYMFYKCAGLEELDLSNFDTSSVTDMSFMFFQSTGLKKLDLSNFDTSSVTNMSYMFATCTALKSLYLDNFTDVSGGTVNMFIETSSLTYLFVSHNFKDFSGLENTNWYDEKNWAQFTNRSELQTYHQKQIEPTGYRKGVFHSLTMDAMGGQFDDAEEQKVQNKVPGDYWEEMIPVKEDYYFDGWYVDQDFTSKFDFSMPATASTTIYAKWIENYTVVIPASISLNETSELKVEGINRGSKTLSVGLNRTATSISESNELTLAHAADTTIQCLAPLSWDGSENNPKNAILTLAPGSEITEGDAVMDIEAPEDIQAGKYTGNLVFSIKYE
>NZ_HG813249.1|WP_031669156.1|769225_770764_+|helix-turn-helix-domain-containing-protein
MREYLDSKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKEFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLSSFPNLQALAKKVHVSYSGIKKEIKELNEELSERNLYISTGNQVEITGDEFSLRIFYAFLFLVAYSGDRWPFSFVRYDEITDLLESCPKEIYRADSIDKAMMIHYYVAMHLLRDRMNCHIDTTRQFKVALYKACTEESKKSESAFIKKVAKQLPNRNYKEITYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASERVNDNLSIPFSEKEMELLRYSFASINYRYFLLDNLINKFNNIVPGYTDLDRNIRKIHKVNHLEPLISQLVNLKEMRLLKPFEERLASDYLIILDKRIDFSIHTLPIKVTILSTISNETAVFDFMRYFSSYYNLEIINQVDTVVDLYISDFSVSPEVLTSLRINQPIVYVNTRWLESDYVKINDNLAKIARKKFIANKKD
>NZ_HG813249.1|WP_015455545.1|767047_768598_+|hydantoinase/oxoprolinase-family-protein
MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESLHRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPEDMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKNDQELAVQKIIEEELGADIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKALEQEGIEHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDVGGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSIVREKDGDIIIGPDSVGYRISEEALVFGGKTMTTTDIAVRLGMAEIGNPELVAHIPTDFAEKAYKKIADMTEDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQYEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLRVKVVGNLV
>NZ_HG813249.1|WP_003728991.1|765954_767055_+|DUF917-domain-containing-protein
MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPIKLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPMEAGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIGIMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRETSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTDSEVIVHFQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTDKGIETVGPRYFGYDVDFEPLEELVKKEERRHV
>NZ_HG813249.1|WP_003721244.1|764670_765954_+|cytosine-permease
MTEKKTVEQAQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWEAILIALLGYGVIVVFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGWFGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPILLFVCIYGLVVSLNNGGLAVVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKSRKDVVKAAIVGILPSGVLMIAVGAILALTAGTADISVVFTNLGLPVLGIIGLILAAWTTNAVNAFSGGIAIINVFNISEKYHKVAVAIAGGLGTVLAVIGILNHFVPIMSVLSAMVPPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVTSWLVGAVIAGIPVILTFFPALPQLPNQPLIGIILSLAVYLVGAKVLSGKTNNVENLEGK
>NZ_HG813249.1|WP_009925652.1|762941_764537_+|PucR-family-transcriptional-regulator
MSVKLADLMKLPSLKEARVVSGKSGLSKLVSSISVLEYTEVALLEDDLFDNDEFYGSEIVVSAFVNIREDVEAQCRTIERLHKVGEVALILYYVGIFVPKIDQKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSVRPPQRNIDTTLKILSDRTHSSLVLTDNSFQVINSITWPRTRHWDFERVIETSKQIDEHELVQLHLDERDFYTARKPIFQDGMQAMHLFMMKEKGALTADVVMQITEVVQVFMNLWGRNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRNNEQVLAELKSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQGMAQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMRPLKSLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKIPESYNLYLAVAIRRLLGGNNNNK
>NZ_HG813249.1|WP_015454177.1|761838_762786_-|MoxR-family-ATPase
MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLEDVPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGNIVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALPEAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFIDDVLKNYIIRLVNATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLAPYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR
>NZ_HG813249.1|WP_015454176.1|760685_761834_-|DUF58-domain-containing-protein
MLKKRLLLAFRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFILLLLFLSSIYPLKAWKVNRSFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQIIPATFGKVRARQQVVYPLFKKQFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSEKSLTIYPTYFPNVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKSSAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEENGEIRVTLLGDQTSKFAPAKGTSRLQDISTAFAEIAPVDSLTLQESLDSNLHSGEKILLFTPCMDTMLMQKVTRLTDNKQLQIITFQSEHSKAMDAPAIFLEQASLLSRWERETK
>NZ_HG813249.1|WP_031669155.1|758529_760689_-|transglutaminase
MKRYLTLVMLFILSVLLISEWIYPFAELTELSTATWIILFITLSLGSFFLRLKYYWTIPLHVVMIIIVSGIYYAKGGILAGNWLGSFFQITFNGFRDMVQFRSSDISMDFILIVFLIALWLLSYITTYSILCKHRIMSVLVLTVAYLAVINTFTDYNSNWAIVRTVLEGFLLLHLALASRIATPNRISADSLKRNGLFYHGFVILLLAVFVFSSLILPKKAPIFPDPVPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRVESKTVYTGTGWANANSGDVISFSSGDNFPIQLTEQTTGATNTAEISFASSSDYMPYPYGTQAVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVSQYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIESYLSTSGTFTYSTDDAKETPMGADYVDQFLFETQIGYCDNFSTSMVVMLRTLGIPARWAKGYTPGDGEKKENDAKTTYTITNNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNTPENTPEQNNGSNSTGETPKKEEPKTETAASNFEIPSWVWWIPAGLVVALLALVIIFRRRIRSYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFGTRVDAELTATEFSRLTKMYEAQVYSNNFTEKVITAEETQLVQQVIARLTK
>NZ_HG813249.1|WP_003721239.1|757657_758413_-|DUF4866-family-protein
MTTIFPKEQNVTPLFEQILANPTACRRFKDVFLDNLESYQETRGFEKDDTLFAKIILSAYRQSDVSALLLGVCGRTLFELLRQAFLIPKKLTVDNPFFLTDKEGNFIAKKDDISNREQEKFQEIYQSDLHHSETTIFLVDDDDIVHSYEPDFSISTKRINKKRGILVLYSLPNTLKLEMTESEVYAFIWKTFLHIQEIIPSSRIFYGQETSENADELGVFLPIHHFEKKMLQNIEQVNELVDALREQMVNK
>NZ_HG813249.1|WP_015454184.1|775669_776143_+|hypothetical-protein
MKKKRVVVISLLLLLVSVIGISSYFLFKDKINLLDVDPSAVEWNGKKQKDTSGEENTIAIPGFEKVTLYANETKQAVNFHNPEINDCYFKISLIHPDGSVLWISDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NZ_HG813249.1|WP_015454185.1|776162_776648_+|hypothetical-protein
MNKLVLSTLSVAAMGMVFFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELQRVGATSDVITSSFKSNNSTVTMANPVIGSFSGYAIEETEVSKIQIGSPQGDKKAGAYQTTLTFTAAFK
>NZ_HG813249.1|WP_031669159.1|776675_776981_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKRKLVLAMVLISFCGMFFLSPDRVQASQTVVEVLISEDDLDVSEENIQEIPKKELAASSDKDNKQHTLPKAGDTVTNYTLLGLVLILIWLIMQRKRKKKE
>NZ_HG813249.1|WP_003733328.1|777056_777323_+|hypothetical-protein
MARIEYGEEIQKSLLVLYSRGSTIDSICKEYGIPRYEFHKWMKLHDSDKLETKEVETFLQIRELKQQKNKLEEEILFLNEAINLLESP
>NZ_HG813249.1|WP_003721256.1|777862_778147_+|DUF3130-domain-containing-protein
MREIKVDERTFQQHATKLASESTGSYLPLKNGNMAYSRANSIDQLRSALIELVDVVEDFQHVTKKDASRLKKMGIAYAKQDQLMGQKINQLEVR
>NZ_HG813249.1|WP_038409712.1|778147_778516_+|hypothetical-protein
MDSAHSQLEQQLQQIKKAKITAETDVDQTRRKQNEQDWLEEDSNQLTQEKRVLLDFLRSGWQGEEASGFHRYLEEQQHEESHAWRRDLQDKRADLDTELQENKDKLHTLETKQATLQKEWSK
>NZ_HG813249.1|WP_003721260.1|779910_780183_+|hypothetical-protein
MTKKEQLYFLLNGLDNGEIEINNFTNQFMKIFDLEIDYDELSKEEYTILGNVSDMAARFSDSEEDLKLPNVYYSEKQIREEVTRSLEALA
>NZ_HG813249.1|WP_003721261.1|780210_780558_+|hypothetical-protein
MQKDTYNGIRLSVIQLIDSKKENLKENNIKLTIIKNEKDGYVVELDNDKCMAEIVVEEPTYAPYRYISFEVVSLMDGKVKIIYSWYDDETSQWSDIEKELNKGIQFLNNFKTMEQ
>NZ_HG813249.1|WP_003733213.1|780961_781204_+|hypothetical-protein
MKRIILTSTLIVWTIVCIYMSISMVSNNTGIAFPIWLHIILLICFLATSIVNVKKKEYLWSTMLFEGELVVLLSLIIVLV
>NZ_HG813249.1|WP_031668867.1|781286_782264_-|HD-domain-containing-protein
MKMTDPLYGTFEIEPVLAELIQSPLVSRLAHVHQGGSSYLVNPLWDLSRLDHSIGVMLFIRKFGGSLEEQIAGLLHDVSHTAFSHVVDYALDFEEEDYHEQIFEDFVKTSTIPAILEKYGYSFEGIFEDISKWEILEQEAPELCADRIDYTLQDLYRHGKISLAEVEGFLQALVMVNGRLYLANISSAEWFVKQYYSEVIDYFYDPLNVYSYEILAEAMRIAFQQETITTDDLRLTDAELLAKLNANSDAREKIQLLASPHLEENEVDFTYHHKKKMRLINPSVLVDGRLIPADELSEKVREMNDWASERSKHGIYIKATKKSKQ

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Crispr_ID: NZ_HG813249_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_HG813249_3

809631-809981

Unclear

I-A

Consensus_repeat	Method
GTTTTAGTTACTTATTGTGAAATGTAAATT	PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	CRISPRCasFinder
GTTTTAGTTACTTATTNTGAAATGTAAATT	CRT

5 spacers

cas6,cas8b2,cas7

The CRISPR arrays of NZ_HG813249_3

>merge|NZ_HG813249|3|809631-809981|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGTTACTTATTTTGAAATGTAAATTTGTCATCTGTGGTGTCTTCAACCACTTCTTCTATGTTTTAGTTACTTATTTTGAAATGTAAATTCTGTAAAATCAAAAGTATCATAGAAACAATCTTCGTTTTAGTTACTTATTGTGAAATGTAAATTTCGCCATGACGAAATCTAGCGCTTGTCCTACTAAGTTTTAGTTACTTATTGTGAAATGTAAATGGCACAGTCTTCACGATTTCGGGGATGGGGAAAACTGTTTTAGTTACTTATTGTGAAATGTAAATTAAACAAGTGCTTCTGGCAATACCAACGTTCCATCTTTTTAGTTACTTATTATGAAATGTAAATT

>NZ_HG813249|3|2|809631-809981|PILER-CR
GTTTTAGTTACTTATTTTGAAATGTAAATT	TGTCATCTGTGGTGTCTTCAACCACTTCTTCTAT
GTTTTAGTTACTTATTTTGAAATGTAAATT	CTGTAAAATCAAAAGTATCATAGAAACAATCTTC
GTTTTAGTTACTTATTGTGAAATGTAAATT	TCGCCATGACGAAATCTAGCGCTTGTCCTACTAA
GTTTTAGTTACTTATTGTGAAATGTAAATG	GCACAGTCTTCACGATTTCGGGGATGGGGAAAACT
GTTTTAGTTACTTATTGTGAAATGTAAATT	AAACAAGTGCTTCTGGCAATACCAACGTTCCATC
TTTTTAGTTACTTATTATGAAATGTAAATT

>NZ_HG813249|3|2|809631-809980|CRISPRCasFinder
GTTTTAGTTACTTATTTTGAAATGTAAAT	TTGTCATCTGTGGTGTCTTCAACCACTTCTTCTAT
GTTTTAGTTACTTATTTTGAAATGTAAAT	TCTGTAAAATCAAAAGTATCATAGAAACAATCTTC
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTCGCCATGACGAAATCTAGCGCTTGTCCTACTAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	GGCACAGTCTTCACGATTTCGGGGATGGGGAAAACT
GTTTTAGTTACTTATTGTGAAATGTAAAT	TAAACAAGTGCTTCTGGCAATACCAACGTTCCATC
TTTTTAGTTACTTATTATGAAATGTAAAT

>NZ_HG813249|3|3|809631-809981|CRT
GTTTTAGTTACTTATTTTGAAATGTAAATT	TGTCATCTGTGGTGTCTTCAACCACTTCTTCTAT
GTTTTAGTTACTTATTTTGAAATGTAAATT	CTGTAAAATCAAAAGTATCATAGAAACAATCTTC
GTTTTAGTTACTTATTGTGAAATGTAAATT	TCGCCATGACGAAATCTAGCGCTTGTCCTACTAA
GTTTTAGTTACTTATTGTGAAATGTAAATG	GCACAGTCTTCACGATTTCGGGGATGGGGAAAACT
GTTTTAGTTACTTATTGTGAAATGTAAATT	AAACAAGTGCTTCTGGCAATACCAACGTTCCATC
TTTTTAGTTACTTATTATGAAATGTAAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_HG813249.1\|WP_003721305.1\|818836_820525_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NZ_HG813249.1\|WP_015454211.1\|808457_809393_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_HG813249.1\|WP_031668874.1\|800683_801334_+\|transaldolase	unknown	unknown	gnl\|CDD\|223254
NZ_HG813249.1\|WP_003721304.1\|818098_818821_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_HG813249.1\|WP_015454208.1\|803506_804109_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
NZ_HG813249.1\|WP_015454215.1\|815380_816811_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_HG813249.1\|WP_015454216.1\|816931_817747_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_HG813249.1\|WP_003733188.1\|811055_811736_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_HG813249.1\|WP_009932856.1\|812126_812585_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_HG813249.1\|WP_003721294.1\|807046_808318_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_HG813249.1\|WP_003721291.1\|805029_805680_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_HG813249.1\|WP_003721290.1\|804620_805019_+\|hypothetical-protein	unknown	unknown	unknown
NZ_HG813249.1\|WP_003721301.1\|814902_815334_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_HG813249.1\|WP_003721292.1\|805676_806723_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_HG813249.1\|WP_003721306.1\|820514_821384_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NZ_HG813249.1\|WP_003721289.1\|804136_804604_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_HG813249.1\|WP_009930754.1\|810370_810949_+\|hypothetical-protein	unknown	unknown	unknown
NZ_HG813249.1\|WP_010989498.1\|801442_803503_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_HG813249.1\|WP_003721293.1\|806738_807032_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_HG813249.1\|WP_003721298.1\|811760_812120_-\|Lin0512-family-protein	unknown	unknown	gnl\|CDD\|131113

Protein	Function_ID	Function_description	E-value
NZ_HG813249.1\|WP_015454211.1\|808457_809393_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	2.37195e-153
NZ_HG813249.1\|WP_003721304.1\|818098_818821_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.75155e-33
NZ_HG813249.1\|WP_015454208.1\|803506_804109_+\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	5.46618e-76
NZ_HG813249.1\|WP_015454215.1\|815380_816811_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	2.52915e-100
NZ_HG813249.1\|WP_015454216.1\|816931_817747_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.75333e-50
NZ_HG813249.1\|WP_003733188.1\|811055_811736_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	6.36121e-61
NZ_HG813249.1\|WP_009932856.1\|812126_812585_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	9.15558e-13
NZ_HG813249.1\|WP_003721294.1\|807046_808318_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
NZ_HG813249.1\|WP_003721291.1\|805029_805680_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	4.74405e-108
NZ_HG813249.1\|WP_003721305.1\|818836_820525_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	5.75294e-26
NZ_HG813249.1\|WP_003721301.1\|814902_815334_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NZ_HG813249.1\|WP_003721292.1\|805676_806723_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
NZ_HG813249.1\|WP_003721306.1\|820514_821384_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.33672e-55
NZ_HG813249.1\|WP_003721289.1\|804136_804604_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	3.45565e-37
NZ_HG813249.1\|WP_031668874.1\|800683_801334_+\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	3.03794e-63
NZ_HG813249.1\|WP_010989498.1\|801442_803503_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.36772e-80
NZ_HG813249.1\|WP_003721293.1\|806738_807032_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
NZ_HG813249.1\|WP_003721298.1\|811760_812120_-\|Lin0512-family-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	5.62162e-67

>NZ_HG813249.1|WP_015454211.1|808457_809393_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAIEVIACATHSVMAGNATERLQNSNIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NZ_HG813249.1|WP_003721294.1|807046_808318_+|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>NZ_HG813249.1|WP_003721293.1|806738_807032_+|PTS-sugar-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>NZ_HG813249.1|WP_003721292.1|805676_806723_+|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>NZ_HG813249.1|WP_003721291.1|805029_805680_+|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
>NZ_HG813249.1|WP_003721290.1|804620_805019_+|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>NZ_HG813249.1|WP_003721289.1|804136_804604_+|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQDKEKLLTEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>NZ_HG813249.1|WP_015454208.1|803506_804109_+|SIS-domain-containing-protein
MDKKAILDNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>NZ_HG813249.1|WP_010989498.1|801442_803503_+|BglG-family-transcription-antiterminator
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKDPNAIRDGIIDILSANIATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>NZ_HG813249.1|WP_031668874.1|800683_801334_+|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRILELTDKQVFVQTVGFSYEEILADARMLLAMFGKEKIAIKIPAHEAGINVIDTLKKEDKTIQILGTAIYSADQAITAALAGADFVAPYVNRMSAANIDPFKEISQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK
>NZ_HG813249.1|WP_009930754.1|810370_810949_+|hypothetical-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTITIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>NZ_HG813249.1|WP_003733188.1|811055_811736_+|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLSFFPESLNVFHWHQDTFALPAGATRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILQIDEAFITPGKYVQSVEVMQEKDVPEDNKQMLEAILDYLINPKTI
>NZ_HG813249.1|WP_003721298.1|811760_812120_-|Lin0512-family-protein
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>NZ_HG813249.1|WP_009932856.1|812126_812585_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTSAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NZ_HG813249.1|WP_003721301.1|814902_815334_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_HG813249.1|WP_015454215.1|815380_816811_-|CapA-family-protein
MKRRTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPLKKTSPANVKTISSEAKKTLNSLASSGADKASISDLNQLIKEIKSYPTEKNDSGIYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKMWRIKSDPAHVAFLPASGVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNADAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_HG813249.1|WP_015454216.1|816931_817747_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRLKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_HG813249.1|WP_003721304.1|818098_818821_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIISKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKGAEIQLNEANCIINFSTGDAETGIIFYNALMSLRGSKVLFGAGNHITVKNIQIVPEKKIIGKRTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLMDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGIGTMTGSGFGMIEQF
>NZ_HG813249.1|WP_003721305.1|818836_820525_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MRTEIEVRANDWLINAGLTGFLNIVGKENVRIDGQAIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLLKQTKFIDPYLDYKTSFLDPVIDYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK
>NZ_HG813249.1|WP_003721306.1|820514_821384_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIIFQAESANYGESLGNISSLKKISRNNGDQYTYISRQAIRYNLMDQIGEKEAPVKAEGGGDKKVIQFLSEATITDFPELDFFGYLKTEKGSGGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKLNENMNIAQAEIHKSYYRYTITIDLDQIGIDGEIALDNKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNIVDVADNNIVIKNIKDLLTYEDIKENTRVGIIDGQFANSDEVKVELKAESVPAFFNDIKGKIDAYYESN

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Crispr_ID: NZ_HG813249_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_HG813249_4

825174-827484

Unclear

I-A

Consensus_repeat	Method
GTTTTAACTACTTATTATGAAATGTAAAT	PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	CRT
GTTTTAACTACTTATTATGAAATGTAAAT	PILER-CR

35 spacers

cas2,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NZ_HG813249_4

>merge|NZ_HG813249|4|825174-827484|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTTAACTACTTATTATGAAATGTAAATAAAGACCTTCGATTTCATTCTCACTTTCCAGTTAATGTTTTAACTACTTATTATGAAATGTAAATTTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGACGTTTTAACTACTTATTATGAAATGTAAATGCTGGTAAATTTGGCGGAACTAATCGTACTGAAATAGTTTTAACTACTTATTATGAAATGTAAATACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCAGTTTTAACTACTTATTATGAAATGTAAATTATAGTCCCCATATCCATCTGCTATTATCCTCCACGTTTTAACTACTTATTATGAAATGTAAATCGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAAGTTTTAACTACTTATTATGAAATGTAAATACGTTGGACAACGAGGTGAGTATGATATGACTCAAATGTTTTAACTACTTATTATGAAATGTAAATGCGGAATGCGAAGTTGTTATATATAACTTATCTCGCGTTTTAACTACTTATTATGAAATGTAAATTCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATGGTTTTAACTACTTATTATGAAATGTAAATGTGCATATGTAAATGTGCATATCTCCTATATTCATGGCTGTATATGTGTGTTTTAACTACTTATTATGAAATGTAAATGTCCACATCGACAATAAAAAACACATTGTATCACTTGTTTTAACTACTTATTATGAAATGTAAATCTGGTTACTCAACTGGCGACAGTAATACACCTCAATGTTTTAACTACTTATTATGAAATGTAAATTTTGGATAGGTTGTTTCTGATAAATAGGTTCACGGTTTTAACTACTTATTATGAAATGTAAATAAGTCTACTTGGATTTAGCTCTACACCTGCAACATGAGTTTTAACTACTTATTATGAAATGTAAATAGAAAAAAAACATCTTTCCAATTTGTTGTTTTGCGTTTTAACTACTTATTATGAAATGTAAATAGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTAGTTTTAACTACTTATTATGAAATGTAAATTTGTTCGACGGCTTAGACAACCATCACGCTTCTTTAGTTTTAACTACTTATTATGAAATGTAAATTATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGAGTTTTAACTACTTATTATGAAATGTAAATCTCATAAGGATTTCGAGGCGGGTTAAACGACATGTAGTTTTAACTACTTATTATGAAATGTAAATGCTTTTTTCAACAATTTTATCACCAGATGTCATTAGTTTTAACTACTTATTATGAAATGTAAATTGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTCGTTTTAACTACTTATTATGAAATGTAAATAAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGGGTTTTAACTACTTATTATGAAATGTAAATGTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTTGTTTTAACTACTTATTATGAAATGTAAATTGTTATCTCCTGTGATGTAAAATAACCCTTCTATCGTTTTAACTACTTATTATGAAATGTAAATTAATACAAAATATTCATAACTCCTACATCATTATATAGTTTTAACTACTTATTATGAAATGTAAATTTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTCGTTTTAACTACTTATTATGAAATGTAAATTTGGATTTTATTAAATACAGAGTCACGGATTGTATTTGTTTTAACTACTTATTATGAAATGTAAATGGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGCGTTTTAACTACTTATTATGAAATGTAAATCACGTACTTTAATCGGCATCAAACCACCTCGATTTCGTTTTAACTACTTATTATGAAATCTAAATCAAGATATGCTAGAAATGGCGCAAATAGCGCGCGGTTTTAACTACTTATTATGAAATGTAAATACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATATGTTTTAACTACTTATTATGAAATGTAAATCAAAACAGAGAACGCGTGTTCATTATCGGACATCTTAGTTTTAACTACTTATTATGAAATGTAAATTTTTGAAATATGAGGACTTAGAAAATGAAAAAAATGTTTTAACTACTTATTATGAAATGTAAATAAAAACTATGCAATTAGCAAAGTGATTTTATGTAATTGTTTTAACTACTTATTATGAAATATAAATTAACGAGCCAATTAAACCATCTTCTTCTAGTAATGTTTTAACTACTTATTATGAAATCATAAA

>NZ_HG813249|4|3|825174-825723|PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	GCTGGTAAATTTGGCGGAACTAATCGTACTGAAATA
GTTTTAACTACTTATTATGAAATGTAAAT	ACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAGTCCCCATATCCATCTGCTATTATCCTCCAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAATTCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATGGTTTTAACTACTTATTATGAAATGTAAATGTGCATATGTAAATGTGCATATCTCCTATATTCATGGCTGTATATGTGTGTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT
GTTTTAACTACTTATTATGAAATGTAAAT	GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC
GTTTTAACTACTTATTATGAAATGTAAAT	CACGTACTTTAATCGGCATCAAACCACCTCGATTTC
GTTTTAACTACTTATTATGAAATCTAAAT	CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT


>NZ_HG813249|4|3|825174-827484|CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	GCTGGTAAATTTGGCGGAACTAATCGTACTGAAATA
GTTTTAACTACTTATTATGAAATGTAAAT	ACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAGTCCCCATATCCATCTGCTATTATCCTCCAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATGTAAATGTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT
GTTTTAACTACTTATTATGAAATGTAAAT	GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC
GTTTTAACTACTTATTATGAAATGTAAAT	CACGTACTTTAATCGGCATCAAACCACCTCGATTTC
GTTTTAACTACTTATTATGAAATCTAAAT	CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT	TAACGAGCCAATTAAACCATCTTCTTCTAGTAAT
GTTTTAACTACTTATTATGAAATCATAAA

>NZ_HG813249|4|4|825174-827484|CRT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	GCTGGTAAATTTGGCGGAACTAATCGTACTGAAATA
GTTTTAACTACTTATTATGAAATGTAAAT	ACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAGTCCCCATATCCATCTGCTATTATCCTCCAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATGTAAATGTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT
GTTTTAACTACTTATTATGAAATGTAAAT	GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC
GTTTTAACTACTTATTATGAAATGTAAAT	CACGTACTTTAATCGGCATCAAACCACCTCGATTTC
GTTTTAACTACTTATTATGAAATCTAAAT	CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT	TAACGAGCCAATTAAACCATCTTCTTCTAGTAAT
GTTTTAACTACTTATTATGAAATCATAAA

>NZ_HG813249|4|4|825838-827421|PILER-CR
	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	GCTGGTAAATTTGGCGGAACTAATCGTACTGAAATA
GTTTTAACTACTTATTATGAAATGTAAAT	ACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAGTCCCCATATCCATCTGCTATTATCCTCCAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAATTCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATGGTTTTAACTACTTATTATGAAATGTAAATGTGCATATGTAAATGTGCATATCTCCTATATTCATGGCTGTATATGTGTGTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT
GTTTTAACTACTTATTATGAAATGTAAAT	GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC
GTTTTAACTACTTATTATGAAATGTAAAT	CACGTACTTTAATCGGCATCAAACCACCTCGATTTC
GTTTTAACTACTTATTATGAAATCTAAAT	CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_HG813249.1\|WP_003733750.1\|828071_829487_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_HG813249.1\|WP_003721320.1\|836811_837552_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_HG813249.1\|WP_003721304.1\|818098_818821_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_HG813249.1\|WP_003721317.1\|833029_833473_+\|hypothetical-protein	unknown	unknown	unknown
NZ_HG813249.1\|WP_003721316.1\|832171_832924_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_HG813249.1\|WP_003721314.1\|829618_830623_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_HG813249.1\|WP_003721315.1\|830654_831971_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NZ_HG813249.1\|WP_015454216.1\|816931_817747_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_HG813249.1\|WP_009932856.1\|812126_812585_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_HG813249.1\|WP_031668875.1\|822211_824395_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_HG813249.1\|WP_003721318.1\|833518_835180_-\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_HG813249.1\|WP_003721310.1\|824697_824976_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_HG813249.1\|WP_003721321.1\|837781_839257_+\|membrane-protein	unknown	unknown	unknown
NZ_HG813249.1\|WP_003721306.1\|820514_821384_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NZ_HG813249.1\|WP_003721301.1\|814902_815334_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_HG813249.1\|WP_003721311.1\|827556_827925_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NZ_HG813249.1\|WP_015454215.1\|815380_816811_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_HG813249.1\|WP_003721305.1\|818836_820525_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NZ_HG813249.1\|WP_003721307.1\|821361_822144_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NZ_HG813249.1\|WP_015454222.1\|835435_836767_+\|DUF1254-domain-containing-protein	unknown	unknown	gnl\|CDD\|227659

Protein	Function_ID	Function_description	E-value
NZ_HG813249.1\|WP_003733750.1\|828071_829487_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.83532e-79
NZ_HG813249.1\|WP_003721320.1\|836811_837552_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	2.56491e-51
NZ_HG813249.1\|WP_003721304.1\|818098_818821_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.75155e-33
NZ_HG813249.1\|WP_003721316.1\|832171_832924_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	5.24308e-64
NZ_HG813249.1\|WP_003721314.1\|829618_830623_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.07552e-20
NZ_HG813249.1\|WP_003721315.1\|830654_831971_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_HG813249.1\|WP_015454216.1\|816931_817747_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.75333e-50
NZ_HG813249.1\|WP_009932856.1\|812126_812585_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	9.15558e-13
NZ_HG813249.1\|WP_031668875.1\|822211_824395_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.29289e-60
NZ_HG813249.1\|WP_003721318.1\|833518_835180_-\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	3.54266e-147
NZ_HG813249.1\|WP_003721310.1\|824697_824976_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.1393e-30
NZ_HG813249.1\|WP_003721306.1\|820514_821384_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.33672e-55
NZ_HG813249.1\|WP_003721301.1\|814902_815334_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NZ_HG813249.1\|WP_003721311.1\|827556_827925_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	1.10012e-41
NZ_HG813249.1\|WP_015454215.1\|815380_816811_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	2.52915e-100
NZ_HG813249.1\|WP_003721305.1\|818836_820525_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	5.75294e-26
NZ_HG813249.1\|WP_003721307.1\|821361_822144_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.37797e-23
NZ_HG813249.1\|WP_015454222.1\|835435_836767_+\|DUF1254-domain-containing-protein	gnl\|CDD\|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	1.38609e-74

>NZ_HG813249.1|WP_003721310.1|824697_824976_+|CRISPR-associated-endonuclease-Cas2
MYVILIYDISIENGGAKVWRNVFKICKKYLTHVQKSVFEGEITPALLVKLRMELDKYIRDDQDSVIVFSSRQQRWLEKEFWGLTDEKTSNFF
>NZ_HG813249.1|WP_031668875.1|822211_824395_+|CRISPR-associated-helicase/endonuclease-Cas3
MHKYLAKSNPEETIQEHTDNLLKNYQRLKKLYPAVEIDWYLLELVCLLHDLGKMNLLFQTKLGNASGKGKEIPHGYLSVAFVPDSKLEEMGYSEDEIKVVYQAIARHHERKYDFSDSEWKKEIIKLEEQWAGFIYSQLGGNAEYSSEVEMLYFYPGSRIFEGNSAADAETFKKYVLLKGLLNRIDFAASGGIDVELENDFLMDSMEVQLAHFKAENPEADWNALQKYMMQHQNENIVVIAETGMGKTEAGLLWLGNNKGFFTLPLRAAINAIYERITKNIVTTNQAERVGLLHSETYSQYLLHEGNAEMDIDEYYTRTRQMSLPITICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLILGLSYIDKFGGKFCIMTATLPGIVTDLLLENGVDFVQPEEKFVSSRIRHSMEMVHTEIESEFIKPFFNNNRILVICNTISKAKKIYSELKEHFQGEEIHLIHSQFIKRDRSAKEKAIFKDGQKDSTKKCIWVATQVVEASLDIDFDLLFTELSDVNGLFQRMGRCYRNRALDVDTNVYVFDGGAKVCSGIGTFIDKLIFVNSKTILNEHAGVLTEEKKMELVEQVYSTEALSGSEFYNDLIDKLNYVKAFESYLMNKADVRMRFRNINSVSVIPEEVWQDNAEEINSYFVTLRKTSKEISTKEKIIARTNLAEFMVSIPDYLYKKGESVVREINRYESVIEFKCGYSSDVGVFMR
>NZ_HG813249.1|WP_003721307.1|821361_822144_+|type-I-B-CRISPR-associated-protein-Cas5
MLIMKAIRVRLWQDLVNFKKPTSFQLKETYPLPPYSTVIGMVHTLCGFTSYHEMKISIQGKYFSKVNDLATRYEFKNGMTYDASRHQIKVDKYGVSRGVSTVELLVDLELLLHIIPEDPSLVPIIEKAFREPIEFPSLGRREDIATIQKVEVVDVEKRQPKKSTEISDGYNAYVPISLTENNSVHFKSHESSVGRDKLLGTRYLLTEKYERVNHGTEKAPKFFRKWRKKDVIYSSRIFVSKKDVFFFDEDDYLVFIEEEE
>NZ_HG813249.1|WP_003721306.1|820514_821384_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIIFQAESANYGESLGNISSLKKISRNNGDQYTYISRQAIRYNLMDQIGEKEAPVKAEGGGDKKVIQFLSEATITDFPELDFFGYLKTEKGSGGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKLNENMNIAQAEIHKSYYRYTITIDLDQIGIDGEIALDNKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNIVDVADNNIVIKNIKDLLTYEDIKENTRVGIIDGQFANSDEVKVELKAESVPAFFNDIKGKIDAYYESN
>NZ_HG813249.1|WP_003721305.1|818836_820525_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MRTEIEVRANDWLINAGLTGFLNIVGKENVRIDGQAIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLLKQTKFIDPYLDYKTSFLDPVIDYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK
>NZ_HG813249.1|WP_003721304.1|818098_818821_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIISKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKGAEIQLNEANCIINFSTGDAETGIIFYNALMSLRGSKVLFGAGNHITVKNIQIVPEKKIIGKRTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLMDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGIGTMTGSGFGMIEQF
>NZ_HG813249.1|WP_015454216.1|816931_817747_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRLKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_HG813249.1|WP_015454215.1|815380_816811_-|CapA-family-protein
MKRRTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPLKKTSPANVKTISSEAKKTLNSLASSGADKASISDLNQLIKEIKSYPTEKNDSGIYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKMWRIKSDPAHVAFLPASGVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNADAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_HG813249.1|WP_003721301.1|814902_815334_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_HG813249.1|WP_009932856.1|812126_812585_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTSAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NZ_HG813249.1|WP_003721311.1|827556_827925_-|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGMAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVVVLLV
>NZ_HG813249.1|WP_003733750.1|828071_829487_+|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPRKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK
>NZ_HG813249.1|WP_003721314.1|829618_830623_+|ROK-family-transcriptional-regulator
MAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKLIRDLVENEEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLLGEPEFVEDMSGEDLDITALKRNTKDIICAFPKISCVVIGVPGIEIGGKLRAMDFPLLLNVQLRETLEAEVNLPVLVETDTNAAILGYKNRPVKEENIVGLYYPERFPPGAGLLMNGEILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMVLLTMSFYDPETIVLYTNFYFGQKDFMEELKEELKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI
>NZ_HG813249.1|WP_003721315.1|830654_831971_-|6-phospho-beta-glucosidase
MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAGREKLEIVGNLAKRMVKKAGVNMEIHLTLDREEALKDADFVTTQLRVGLLDARVKDERIPNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVLRYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTKDVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAEHGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQIVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAEAAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK
>NZ_HG813249.1|WP_003721316.1|832171_832924_+|MurR/RpiR-family-transcriptional-regulator
MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVSTTTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQIQNAVEILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLSDKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEMYQEANITSQLPALYTIENIAREIRTQLDKEKM
>NZ_HG813249.1|WP_003721317.1|833029_833473_+|hypothetical-protein
MYSNMKEKVVFTLIMCSLMILCMSSYNIFLENGIGTDSLLIVLKAFVPFLFIGFLLDFFVVGKIVYRLHALLVSEDASKFKKIIMMQLLMVTFMCVLMSTLSLIVNQGEWSHLGILILRNYFVALFLQIFIVSPFVRLISPRIFALL
>NZ_HG813249.1|WP_003721318.1|833518_835180_-|SulP-family-inorganic-anion-transporter
MFKHILLSLNGYKISYLRNDVISGVGVAALTIPVAMGYAQVAGLPPIYGLYASFLPVIAYVIFASSPQLIFGIDATASAITGSIILGTAGLAAGSKEAIALAPILAFFCAIFLVLFSVLKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGDSFFSSLGIIFGQFFQSNWISFAMGVVTVIIVITCKKVIPKIPMSLVVLVLGTMAAYFFKLDQYNVDIVGKIPVGFPSLALPDFGASSWALAIGGGLVCAIATFAGSLLPSESFAMRNKYTIDDNRELFAYGVSNFVAAFSGCSPASASVSRTAANEQFRGKTQMVSIVAATIIALIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKVSRREATVWIVAALGTLLVGVIFGVLLGIFLSFINVVSRSMKTPIAILGVIEGRHGYFDLKRKSEAKPIPNVVIYRYSASLFFGNFNKFADGLKEAVQDDTKLVIFEASAIINIDTTATESMKDLLKWLDDKGIEYYFADLIDHLKTSFRKHDLGYLIDNGYTKKTVEDALDAYYAEHK
>NZ_HG813249.1|WP_015454222.1|835435_836767_+|DUF1254-domain-containing-protein
MATQKNLVDLATKAYIYGFPFIFNTQQIERYVTVGIGGTKQVPFNNFTHASRLAEPSDKFVSVNNDTIYSNAPIDVSAGPVVLSVPDTSGRYYVLQFVDAWSNNFAYVGKRATGTSAGKFLLTPPNWNGDVPADMIEIKFPTNIGIIIGRLACDGEADLPTVRELQEQLKITPLNEGKEVDGFPEYDRSLGKELAFFEQLRVYMAQFPPAERDLVKQESFAPIGLMEKGVSPYSNPSEELKNALKEGAKAGLANIKKATTNFKSENGWGLTQHLFDYNADFFEIGTKKSLDWVIEDREEAYIIRAVSAITALWGNHGYEAVYLMTWTDTDGNALNGKNKYTLELNPIPPVDSFWSITMYDLPEYFLCENPINRYSIGDRTPGIQYNDDGGITIVVSKDEPTDPKERANWLPAPDAEFRPMFRLYNPQQPLVDGSYHFPGFEKK
>NZ_HG813249.1|WP_003721320.1|836811_837552_-|MerR-family-transcriptional-regulator
MQIKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSSNPYEEEARKLWGDKVVEKANEKVNNMSEKEQLTLKESFDAEFRHLASVRKLTPESEEAQLEIDHFFHYLNDTHGNIYSLEAFASLGEMYVNDERFTKNIDQFGDGLSQFLQEAMTIYAKNK
>NZ_HG813249.1|WP_003721321.1|837781_839257_+|membrane-protein
MIRKVKSISMWLWHHLTPQIFAVICVFIITIIALFMPPYIGMADNGDFFRIFSSNGLFVNNTNYDALQFGHFVKEFGIYQYFNENQVAIYSSQSIFIQMALLLNKLFWSTTVFDVRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYVVAALTVFIFADTAYTAYFNSFFSEGLILIMMLYISAGFLLLYQHKYNDYAMLGLIFVASLILITAKQQNAPIAVVIAVCGILVFFIRKNRAFRISAAATFLVIFLSGVVMYAFIPGEFVTINQYQTMTRGVLLDSENPEKSLEEMGMNSEFALLKGTNFYQKYKMIDLDSKLMEKEFYPNYNFVTVLSYYLENPKQFGKMLDLSAQNSFSIRPFEMGNFEKATGYKFKEKTHFFSAYSDVKEKFAPAKFTFLILWALVFLICYGVSAFKHFREKNIRGTLLFDLIVLLIGSGFAVILVTIVGDGEADLTKHNFLFNVCFDLTMLIGAASLLEVYLKKRGERNA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_HG813249_3	3.3\|809789\|34\|NZ_HG813249\|PILER-CR,CRT	809789-809822	34	NZ_HG813249.1	1735051-1735084	0	1.0
NZ_HG813249_3	3.8\|809788\|35\|NZ_HG813249\|CRISPRCasFinder	809788-809822	35	NZ_HG813249.1	1735051-1735085	0	1.0
NZ_HG813249_4	4.12\|825932\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	825932-825967	36	NZ_HG813249.1	1733355-1733390	0	1.0
NZ_HG813249_4	4.16\|826189\|34\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	826189-826222	34	NZ_HG813249.1	1733964-1733997	0	1.0
NZ_HG813249_4	4.32\|827226\|37\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827226-827262	37	NZ_HG813249.1	1850997-1851033	0	1.0
NZ_HG813249_3	3.4\|809853\|35\|NZ_HG813249\|PILER-CR,CRT	809853-809887	35	NZ_HG813249.1	1735586-1735620	1	0.971
NZ_HG813249_3	3.9\|809852\|36\|NZ_HG813249\|CRISPRCasFinder	809852-809887	36	NZ_HG813249.1	1735585-1735620	1	0.972
NZ_HG813249_1	1.5\|349\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	349-378	30	NZ_HG813249.1	1558002-1558031	2	0.933
NZ_HG813249_3	3.3\|809789\|34\|NZ_HG813249\|PILER-CR,CRT	809789-809822	34	NZ_HG813249.1	1561029-1561062	2	0.941
NZ_HG813249_3	3.8\|809788\|35\|NZ_HG813249\|CRISPRCasFinder	809788-809822	35	NZ_HG813249.1	1561029-1561063	2	0.943

1. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to position: 1735051-1735084, mismatch: 0, identity: 1.0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

2. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to position: 1735051-1735085, mismatch: 0, identity: 1.0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

3. spacer 4.12|825932|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to position: 1733355-1733390, mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

4. spacer 4.16|826189|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to position: 1733964-1733997, mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

5. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to position: 1850997-1851033, mismatch: 0, identity: 1.0

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgcgtgttcattatcggacatctta	Protospacer
*************************************

6. spacer 3.4|809853|35|NZ_HG813249|PILER-CR,CRT matches to position: 1735586-1735620, mismatch: 1, identity: 0.971

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaact	Protospacer
*******************.***************

7. spacer 3.9|809852|36|NZ_HG813249|CRISPRCasFinder matches to position: 1735585-1735620, mismatch: 1, identity: 0.972

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

8. spacer 1.5|349|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to position: 1558002-1558031, mismatch: 2, identity: 0.933

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattatttattttctcccaaataaaatca	Protospacer
*****.*****.******************

9. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to position: 1561029-1561062, mismatch: 2, identity: 0.941

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgtcatgacgaaatctagcgcttgtccaactaa	Protospacer
***.************************ *****

10. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to position: 1561029-1561063, mismatch: 2, identity: 0.943

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgtcatgacgaaatctagcgcttgtccaactaa	Protospacer
****.************************ *****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	NC_042048	Listeria phage LMTA-34, complete genome	74603-74632	0	1.0
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	NC_024360	Listeria phage LMSP-25, complete genome	74603-74632	0	1.0
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	4400-4429	0	1.0
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	FW590615	JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME	2528-2557	0	1.0
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	HI504184	Sequence 26 from Patent EP2147092	2528-2557	0	1.0
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	AJ417489	bacteriophage U153 int gene for U153 integrase	2528-2557	0	1.0
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	KJ094022	Listeria phage LP-030-3, complete genome	30296-30325	0	1.0
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	AJ312240	Bacteriophage PSA complete genome	18523-18552	0	1.0
NZ_HG813249_1	1.5\|349\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	349-378	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	225302-225331	0	1.0
NZ_HG813249_1	1.5\|349\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	349-378	30	KJ094023	Listeria phage LP-101, complete genome	15775-15804	0	1.0
NZ_HG813249_3	3.3\|809789\|34\|NZ_HG813249\|PILER-CR,CRT	809789-809822	34	MT500540	Listeria phage LP-HM00113468, complete genome	26210-26243	0	1.0
NZ_HG813249_3	3.8\|809788\|35\|NZ_HG813249\|CRISPRCasFinder	809788-809822	35	MT500540	Listeria phage LP-HM00113468, complete genome	26209-26243	0	1.0
NZ_HG813249_4	4.12\|825932\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	825932-825967	36	NC_003216	Listeria phage A118, complete genome	18563-18598	0	1.0
NZ_HG813249_4	4.12\|825932\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	825932-825967	36	AJ242593	Bacteriophage A118 complete genome	18563-18598	0	1.0
NZ_HG813249_4	4.16\|826189\|34\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	826189-826222	34	NC_003216	Listeria phage A118, complete genome	19172-19205	0	1.0
NZ_HG813249_4	4.16\|826189\|34\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	826189-826222	34	AJ242593	Bacteriophage A118 complete genome	19172-19205	0	1.0
NZ_HG813249_4	4.29\|827033\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827033-827068	36	KP399678	Listeria phage vB_LmoS_293, complete genome	6980-7015	0	1.0
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	MN172529	Listeria phage LP-039, complete genome	59048-59077	1	0.967
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	MT178766	Listeria virus P100plus, complete genome	26020-26049	1	0.967
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	NC_025440	Listeria phage WIL-1, complete genome	106789-106818	1	0.967
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	NC_047872	Listeria phage LMTA-94, complete genome	72338-72367	1	0.967
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	MT178767	Listeria virus P200, complete genome	26020-26049	1	0.967
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	DQ004855	Listeria bacteriophage P100, complete genome	26019-26048	1	0.967
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	KJ591605	Listeria phage LMTA-57, complete genome	83087-83116	1	0.967
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	KJ094033	Listeria phage LP-048, complete genome	61505-61534	1	0.967
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	KJ668715	Listeria phage LMTA-34, partial genome	59201-59230	1	0.967
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	MN128594	Listeria phage LP-066, complete genome	60544-60573	1	0.967
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	KJ094030	Listeria phage LP-083-2, complete genome	65710-65739	1	0.967
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	KJ094031	Listeria phage LP-124, complete genome	27825-27854	1	0.967
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	NC_021539	Listeria phage LP-030-2, complete genome	18331-18360	1	0.967
NZ_HG813249_3	3.2\|809725\|34\|NZ_HG813249\|PILER-CR,CRT	809725-809758	34	DQ003642	Listeria phage A006, complete genome	5993-6026	1	0.971
NZ_HG813249_3	3.3\|809789\|34\|NZ_HG813249\|PILER-CR,CRT	809789-809822	34	NC_003216	Listeria phage A118, complete genome	20259-20292	1	0.971
NZ_HG813249_3	3.3\|809789\|34\|NZ_HG813249\|PILER-CR,CRT	809789-809822	34	AJ242593	Bacteriophage A118 complete genome	20259-20292	1	0.971
NZ_HG813249_3	3.3\|809789\|34\|NZ_HG813249\|PILER-CR,CRT	809789-809822	34	X85008	Bacteriophage A118 hol118 and ply118 genes	507-540	1	0.971
NZ_HG813249_3	3.4\|809853\|35\|NZ_HG813249\|PILER-CR,CRT	809853-809887	35	DQ003642	Listeria phage A006, complete genome	19079-19113	1	0.971
NZ_HG813249_3	3.7\|809724\|35\|NZ_HG813249\|CRISPRCasFinder	809724-809758	35	DQ003642	Listeria phage A006, complete genome	5993-6027	1	0.971
NZ_HG813249_3	3.8\|809788\|35\|NZ_HG813249\|CRISPRCasFinder	809788-809822	35	NC_003216	Listeria phage A118, complete genome	20259-20293	1	0.971
NZ_HG813249_3	3.8\|809788\|35\|NZ_HG813249\|CRISPRCasFinder	809788-809822	35	AJ242593	Bacteriophage A118 complete genome	20259-20293	1	0.971
NZ_HG813249_3	3.8\|809788\|35\|NZ_HG813249\|CRISPRCasFinder	809788-809822	35	X85008	Bacteriophage A118 hol118 and ply118 genes	507-541	1	0.971
NZ_HG813249_3	3.9\|809852\|36\|NZ_HG813249\|CRISPRCasFinder	809852-809887	36	DQ003642	Listeria phage A006, complete genome	19078-19113	1	0.972
NZ_HG813249_4	4.6\|825528\|36\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	825528-825563	36	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	60125-60160	1	0.972
NZ_HG813249_4	4.6\|825528\|36\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	825528-825563	36	NC_009812	Listeria phage B025, complete genome	27503-27538	1	0.972
NZ_HG813249_4	4.29\|827033\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827033-827068	36	NC_003216	Listeria phage A118, complete genome	6982-7017	1	0.972
NZ_HG813249_4	4.29\|827033\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827033-827068	36	AJ242593	Bacteriophage A118 complete genome	6982-7017	1	0.972
NZ_HG813249_4	4.29\|827033\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827033-827068	36	MH341452	Listeria phage PSU-VKH-LP040, complete genome	6993-7028	1	0.972
NZ_HG813249_4	4.31\|827161\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827161-827196	36	NC_021539	Listeria phage LP-030-2, complete genome	14044-14079	1	0.972
NZ_HG813249_4	4.31\|827161\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827161-827196	36	AJ312240	Bacteriophage PSA complete genome	14022-14057	1	0.972
NZ_HG813249_4	4.32\|827226\|37\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827226-827262	37	KY705255	Streptococcus phage P0095, complete genome	33666-33702	1	0.973
NZ_HG813249_4	4.32\|827226\|37\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827226-827262	37	KY705251	Streptococcus phage P0091, complete genome	32778-32814	1	0.973
NZ_HG813249_4	4.32\|827226\|37\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827226-827262	37	KX879643	Streptococcus phage CHPC1151, complete genome	31697-31733	1	0.973
NZ_HG813249_4	4.32\|827226\|37\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827226-827262	37	MK202161	Streptococcus phage CHPC1282, complete genome	32484-32520	1	0.973
NZ_HG813249_4	4.32\|827226\|37\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827226-827262	37	KY705252	Streptococcus phage P0092, complete genome	31845-31881	1	0.973
NZ_HG813249_4	4.32\|827226\|37\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827226-827262	37	MH937506	Streptococcus phage CHPC1148, complete genome	35552-35588	1	0.973
NZ_HG813249_4	4.32\|827226\|37\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827226-827262	37	KY705253	Streptococcus phage P0093, complete genome	32631-32667	1	0.973
NZ_HG813249_4	4.32\|827226\|37\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827226-827262	37	KY705254	Streptococcus phage P0094, complete genome	31034-31070	1	0.973
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	MT438761	Listeria virus P61, complete genome	70795-70824	2	0.933
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	60394-60423	2	0.933
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	DQ003638	Listeria phage A511, complete genome	59585-59614	2	0.933
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	KJ591604	Listeria phage LMTA-148, complete genome	66986-67015	2	0.933
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	80589-80618	2	0.933
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	NC_041862	Listeria phage LP-064, complete genome	69005-69034	2	0.933
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	JX126918	Listeria phage LP-125, complete genome	69007-69036	2	0.933
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	58894-58923	2	0.933
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	KJ535721	Listeria phage List-36, complete genome	69453-69482	2	0.933
NZ_HG813249_1	1.2\|151\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	151-180	30	FJ147490	Listeria phage 20422-1 unknown genes	607-636	2	0.933
NZ_HG813249_3	3.2\|809725\|34\|NZ_HG813249\|PILER-CR,CRT	809725-809758	34	MH341451	Listeria phage PSU-VKH-LP019, complete genome	5984-6017	2	0.941
NZ_HG813249_3	3.2\|809725\|34\|NZ_HG813249\|PILER-CR,CRT	809725-809758	34	KP399677	Listeria phage vB_LmoS_188, complete genome	5993-6026	2	0.941
NZ_HG813249_3	3.4\|809853\|35\|NZ_HG813249\|PILER-CR,CRT	809853-809887	35	NC_003216	Listeria phage A118, complete genome	20794-20828	2	0.943
NZ_HG813249_3	3.4\|809853\|35\|NZ_HG813249\|PILER-CR,CRT	809853-809887	35	AJ242593	Bacteriophage A118 complete genome	20794-20828	2	0.943
NZ_HG813249_3	3.4\|809853\|35\|NZ_HG813249\|PILER-CR,CRT	809853-809887	35	X85008	Bacteriophage A118 hol118 and ply118 genes	1042-1076	2	0.943
NZ_HG813249_3	3.4\|809853\|35\|NZ_HG813249\|PILER-CR,CRT	809853-809887	35	KJ094023	Listeria phage LP-101, complete genome	19818-19852	2	0.943
NZ_HG813249_3	3.7\|809724\|35\|NZ_HG813249\|CRISPRCasFinder	809724-809758	35	MH341451	Listeria phage PSU-VKH-LP019, complete genome	5984-6018	2	0.943
NZ_HG813249_3	3.7\|809724\|35\|NZ_HG813249\|CRISPRCasFinder	809724-809758	35	KP399677	Listeria phage vB_LmoS_188, complete genome	5993-6027	2	0.943
NZ_HG813249_3	3.9\|809852\|36\|NZ_HG813249\|CRISPRCasFinder	809852-809887	36	NC_003216	Listeria phage A118, complete genome	20793-20828	2	0.944
NZ_HG813249_3	3.9\|809852\|36\|NZ_HG813249\|CRISPRCasFinder	809852-809887	36	AJ242593	Bacteriophage A118 complete genome	20793-20828	2	0.944
NZ_HG813249_3	3.9\|809852\|36\|NZ_HG813249\|CRISPRCasFinder	809852-809887	36	X85008	Bacteriophage A118 hol118 and ply118 genes	1041-1076	2	0.944
NZ_HG813249_3	3.9\|809852\|36\|NZ_HG813249\|CRISPRCasFinder	809852-809887	36	KJ094023	Listeria phage LP-101, complete genome	19817-19852	2	0.944
NZ_HG813249_4	4.6\|825528\|36\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	825528-825563	36	KJ094023	Listeria phage LP-101, complete genome	27001-27036	2	0.944
NZ_HG813249_4	4.11\|825867\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	825867-825902	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	26132-26167	2	0.944
NZ_HG813249_4	4.17\|826252\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	826252-826287	36	KJ094022	Listeria phage LP-030-3, complete genome	38302-38337	2	0.944
NZ_HG813249_4	4.19\|826382\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	826382-826417	36	KP399678	Listeria phage vB_LmoS_293, complete genome	1049-1084	2	0.944
NZ_HG813249_4	4.29\|827033\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827033-827068	36	DQ003637	Listeria phage A500, complete genome	6959-6994	2	0.944
NZ_HG813249_4	4.32\|827226\|37\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827226-827262	37	MN689509	Lactococcus phage CHPC1175, complete genome	29544-29580	2	0.946
NZ_HG813249_4	4.32\|827226\|37\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827226-827262	37	MK448735	Streptococcus phage Javan349, complete genome	11483-11519	2	0.946
NZ_HG813249_1	1.5\|349\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	349-378	30	MT500540	Listeria phage LP-HM00113468, complete genome	29150-29179	3	0.9
NZ_HG813249_4	4.1\|825203\|36\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	825203-825238	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	228347-228382	3	0.917
NZ_HG813249_4	4.18\|826317\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	826317-826352	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	41996-42031	3	0.917
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	NZ_CP026684	Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM2, complete sequence	95843-95872	5	0.833
NZ_HG813249_4	4.18\|826317\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	826317-826352	36	KJ094023	Listeria phage LP-101, complete genome	32760-32795	5	0.861
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	KT207918	Bacillus phage Eyuki, complete genome	116456-116485	6	0.8
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	NC_031054	Bacillus phage DirtyBetty, complete genome	116445-116474	6	0.8
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	NZ_CP031070	Bacillus sp. JAS24-2 plasmid pl278, complete sequence	44141-44170	6	0.8
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	MH538193	Bacillus phage Saddex, complete genome	117316-117345	6	0.8
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	MF288919	Bacillus phage AaronPhadgers, complete genome	115968-115997	6	0.8
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	MG763894	Bacillus phage HonestAbe, complete genome	116215-116244	6	0.8
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	NC_031116	Bacillus phage Zuko, complete genome	117017-117046	6	0.8
NZ_HG813249_4	4.15\|826126\|34\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	826126-826159	34	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1764851-1764884	6	0.824
NZ_HG813249_4	4.29\|827033\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827033-827068	36	KJ094022	Listeria phage LP-030-3, complete genome	15373-15408	6	0.833
NZ_HG813249_4	4.33\|827292\|35\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827292-827326	35	MN694189	Marine virus AFVG_250M578, complete genome	47879-47913	6	0.829
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	KX961629	Bacillus phage BJ4, complete genome	115259-115288	7	0.767
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	NC_031070	Bacillus phage Nemo, complete genome	116990-117019	7	0.767
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	MF288920	Bacillus phage Zainny, complete genome	116438-116467	7	0.767
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	KJ489399	Bacillus phage Hakuna, complete genome	114490-114519	7	0.767
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	NC_031027	Bacillus phage SageFayge, complete genome	115953-115982	7	0.767
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	KX349902	Bacillus phage Kida, complete genome	116180-116209	7	0.767
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	KX156152	Bacillus phage Smudge, complete genome	116059-116088	7	0.767
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	KJ489401	Bacillus phage Megatron, complete genome	115838-115867	7	0.767
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	MN038179	Bacillus phage ALPS, complete genome	116242-116271	7	0.767
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	MH638311	Bacillus phage OmnioDeoPrimus, complete genome	115905-115934	7	0.767
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	MF288918	Bacillus phage Bubs, complete genome	117020-117049	7	0.767
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	KX961632	Bacillus phage SBP8a, complete genome	115649-115678	7	0.767
NZ_HG813249_1	1.5\|349\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	349-378	30	MG592459	Vibrio phage 1.084.O._10N.261.49.F5, partial genome	30611-30640	7	0.767
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	NZ_CP016726	Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08A, complete sequence	53675-53704	8	0.733
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	NZ_CP023393	Lactococcus raffinolactis strain WiKim0068 plasmid pWiKim0068-1, complete sequence	30092-30121	8	0.733
NZ_HG813249_1	1.3\|217\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	217-246	30	NZ_CP034167	Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-3, complete sequence	117743-117772	9	0.7
NZ_HG813249_3	3.7\|809724\|35\|NZ_HG813249\|CRISPRCasFinder	809724-809758	35	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	1102881-1102915	9	0.743
NZ_HG813249_4	4.15\|826126\|34\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	826126-826159	34	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	39302-39335	9	0.735
NZ_HG813249_4	4.20\|826447\|35\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	826447-826481	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	491525-491559	9	0.743
NZ_HG813249_4	4.33\|827292\|35\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827292-827326	35	MK448625	Streptococcus satellite phage Javan738, complete genome	5960-5994	9	0.743
NZ_HG813249_4	4.33\|827292\|35\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827292-827326	35	MK448449	Streptococcus satellite phage Javan356, complete genome	4490-4524	9	0.743
NZ_HG813249_4	4.33\|827292\|35\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827292-827326	35	MK448636	Streptococcus satellite phage Javan749, complete genome	6112-6146	9	0.743
NZ_HG813249_4	4.33\|827292\|35\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827292-827326	35	NZ_CP045037	Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence	34734-34768	9	0.743
NZ_HG813249_4	4.33\|827292\|35\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827292-827326	35	NZ_CP018177	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence	11325-11359	9	0.743
NZ_HG813249_4	4.33\|827292\|35\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827292-827326	35	NZ_CP018181	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence	63608-63642	9	0.743
NZ_HG813249_3	3.2\|809725\|34\|NZ_HG813249\|PILER-CR,CRT	809725-809758	34	MK044828	Streptococcus phage 33888, complete genome	5436-5469	10	0.706
NZ_HG813249_4	4.30\|827098\|34\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827098-827131	34	NZ_CP034816	Paracoccus sp. Arc7-R13 plasmid unnamed6, complete sequence	26153-26186	11	0.676

1. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 0, identity: 1.0

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatacaggttaggaagtaaactccttgta	Protospacer
******************************

2. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 0, identity: 1.0

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatacaggttaggaagtaaactccttgta	Protospacer
******************************

3. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

4. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to FW590615 (JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

5. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to HI504184 (Sequence 26 from Patent EP2147092) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

6. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to AJ417489 (bacteriophage U153 int gene for U153 integrase) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

7. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

8. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

9. spacer 1.5|349|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 0, identity: 1.0

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattgtttatcttctcccaaataaaatca	Protospacer
******************************

10. spacer 1.5|349|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattgtttatcttctcccaaataaaatca	Protospacer
******************************

11. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

12. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

13. spacer 4.12|825932|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

14. spacer 4.12|825932|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

15. spacer 4.16|826189|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

16. spacer 4.16|826189|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

17. spacer 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaaccacctcgatttc	Protospacer
************************************

18. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

19. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

20. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

21. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

22. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

23. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

24. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

25. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

26. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ668715 (Listeria phage LMTA-34, partial genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

27. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

28. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

29. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

30. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.967

cttaaagttgtcaacttctattttttatat-	CRISPR spacer
cttaaagttgtcaacttcta-tttttatata	Protospacer
******************** *********

31. spacer 3.2|809725|34|NZ_HG813249|PILER-CR,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.971

ctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
ctgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
***************************.******

32. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.971

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
*******************************.**

33. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.971

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
*******************************.**

34. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 1, identity: 0.971

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
*******************************.**

35. spacer 3.4|809853|35|NZ_HG813249|PILER-CR,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.971

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcggggatggggaaaacg	Protospacer
**********************************

36. spacer 3.7|809724|35|NZ_HG813249|CRISPRCasFinder matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.971

tctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tctgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
****************************.******

37. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

38. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

39. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

40. spacer 3.9|809852|36|NZ_HG813249|CRISPRCasFinder matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.972

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcggggatggggaaaacg	Protospacer
***********************************

41. spacer 4.6|825528|36|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 1, identity: 0.972

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgatttttcgtagcccaattgctaaa	Protospacer
************.***********************

42. spacer 4.6|825528|36|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.972

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgatttttcgtagcccaattgctaaa	Protospacer
************.***********************

43. spacer 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctcgatttc	Protospacer
***********************.************

44. spacer 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctcgatttc	Protospacer
***********************.************

45. spacer 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcattaaaccacctcgatttc	Protospacer
*******************.****************

46. spacer 4.31|827161|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.972

acgtttgcggtagttttaccgggcacggtcaaatat	CRISPR spacer
acgttcgcggtagttttaccgggcacggtcaaatat	Protospacer
*****.******************************

47. spacer 4.31|827161|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 1, identity: 0.972

acgtttgcggtagttttaccgggcacggtcaaatat	CRISPR spacer
acgttcgcggtagttttaccgggcacggtcaaatat	Protospacer
*****.******************************

48. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KY705255 (Streptococcus phage P0095, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

49. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KY705251 (Streptococcus phage P0091, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

50. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KX879643 (Streptococcus phage CHPC1151, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

51. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MK202161 (Streptococcus phage CHPC1282, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

52. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KY705252 (Streptococcus phage P0092, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

53. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MH937506 (Streptococcus phage CHPC1148, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

54. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KY705253 (Streptococcus phage P0093, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

55. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KY705254 (Streptococcus phage P0094, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

56. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

57. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

58. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

59. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

60. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

61. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

62. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

63. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

64. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ535721 (Listeria phage List-36, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

65. spacer 1.2|151|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to FJ147490 (Listeria phage 20422-1 unknown genes) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

66. spacer 3.2|809725|34|NZ_HG813249|PILER-CR,CRT matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 2, identity: 0.941

ctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
ccgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
*.*************************.******

67. spacer 3.2|809725|34|NZ_HG813249|PILER-CR,CRT matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 2, identity: 0.941

ctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
ccgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
*.*************************.******

68. spacer 3.4|809853|35|NZ_HG813249|PILER-CR,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 2, identity: 0.943

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaacg	Protospacer
*******************.**************

69. spacer 3.4|809853|35|NZ_HG813249|PILER-CR,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 2, identity: 0.943

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaacg	Protospacer
*******************.**************

70. spacer 3.4|809853|35|NZ_HG813249|PILER-CR,CRT matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 2, identity: 0.943

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaacg	Protospacer
*******************.**************

71. spacer 3.4|809853|35|NZ_HG813249|PILER-CR,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.943

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgattgcggggatggggaaaacg	Protospacer
***************** ****************

72. spacer 3.7|809724|35|NZ_HG813249|CRISPRCasFinder matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 2, identity: 0.943

tctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tccgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
**.*************************.******

73. spacer 3.7|809724|35|NZ_HG813249|CRISPRCasFinder matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 2, identity: 0.943

tctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tccgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
**.*************************.******

74. spacer 3.9|809852|36|NZ_HG813249|CRISPRCasFinder matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaacg	Protospacer
********************.**************

75. spacer 3.9|809852|36|NZ_HG813249|CRISPRCasFinder matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaacg	Protospacer
********************.**************

76. spacer 3.9|809852|36|NZ_HG813249|CRISPRCasFinder matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaacg	Protospacer
********************.**************

77. spacer 3.9|809852|36|NZ_HG813249|CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgattgcggggatggggaaaacg	Protospacer
****************** ****************

78. spacer 4.6|825528|36|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.944

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgattttttgtagcccaattgctaaa	Protospacer
************.*****.*****************

79. spacer 4.11|825867|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 2, identity: 0.944

gtccacatcgacaataaaaaacacattgtatcactt	CRISPR spacer
gtccacattgacaacaaaaaacacattgtatcactt	Protospacer
********.*****.*********************

80. spacer 4.17|826252|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.944

ttgttcgacggcttagacaaccatcacgcttcttta	CRISPR spacer
cttttcgacggcttagacaaccatcacgcttcttta	Protospacer
.* *********************************

81. spacer 4.19|826382|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 2, identity: 0.944

ctcataaggatttcgaggcgggttaaacgacatgta	CRISPR spacer
ctcataaggattgcgaggcgggttaaatgacatgta	Protospacer
************ **************.********

82. spacer 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 2, identity: 0.944

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctctatttc	Protospacer
***********************.****** *****

83. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MN689509 (Lactococcus phage CHPC1175, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaaccgagaacgtgtgttcattatcggacatctta	Protospacer
****** *******.**********************

84. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MK448735 (Streptococcus phage Javan349, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgggtgttcattgtcggacatctta	Protospacer
************** *********.************

85. spacer 1.5|349|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 3, identity: 0.9

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattgtttattttctcccagataaaatcg	Protospacer
***********.********.********.

86. spacer 4.1|825203|36|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 3, identity: 0.917

aaagaccttcgatttcattctcactttccagttaat	CRISPR spacer
gaaaaccttcgatttcattcttactttccagttaat	Protospacer
.**.*****************.**************

87. spacer 4.18|826317|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 3, identity: 0.917

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
tataaaatattgtccaatgtgtggaaggagtttggg	Protospacer
************.********.*************.

88. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026684 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM2, complete sequence) position: , mismatch: 5, identity: 0.833

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaaattttcaacttctattttttctct	Protospacer
 *****.** **************** * *

89. spacer 4.18|826317|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 5, identity: 0.861

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
cattgaattttgcccaatgtgcggaaggagcttgga	Protospacer
.** .*** *********************.*****

90. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KT207918 (Bacillus phage Eyuki, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactattttttaagg	Protospacer
 ***** ********* ********** .

91. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_031054 (Bacillus phage DirtyBetty, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactattttttaagg	Protospacer
 ***** ********* ********** .

92. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031070 (Bacillus sp. JAS24-2 plasmid pl278, complete sequence) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cctcattatgtcaatttctattttttatat	Protospacer
*.* *   ******.***************

93. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MH538193 (Bacillus phage Saddex, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaaggt	Protospacer
 ***** ********* ******** * .*

94. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MF288919 (Bacillus phage AaronPhadgers, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaaggt	Protospacer
 ***** ********* ******** * .*

95. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MG763894 (Bacillus phage HonestAbe, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaaggt	Protospacer
 ***** ********* ******** * .*

96. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_031116 (Bacillus phage Zuko, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaaggt	Protospacer
 ***** ********* ******** * .*

97. spacer 4.15|826126|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.824

agaaaaaaaacatctttccaatttgttgttttgc	CRISPR spacer
agcaaaaaaacatctttcctatttgttttatcac	Protospacer
** **************** ******* * *..*

98. spacer 4.29|827033|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 6, identity: 0.833

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
tattaactttaatcggcatcaaaccacctctatctc	Protospacer
.*.  ************************* **.**

99. spacer 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 6, identity: 0.829

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
taataaaaaatgagggcttagaaaatgaaaaaatt	Protospacer
*  *.*** ******.***************** *

100. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KX961629 (Bacillus phage BJ4, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

101. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_031070 (Bacillus phage Nemo, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

102. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MF288920 (Bacillus phage Zainny, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

103. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ489399 (Bacillus phage Hakuna, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

104. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NC_031027 (Bacillus phage SageFayge, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

105. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KX349902 (Bacillus phage Kida, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

106. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KX156152 (Bacillus phage Smudge, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

107. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KJ489401 (Bacillus phage Megatron, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

108. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MN038179 (Bacillus phage ALPS, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

109. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MH638311 (Bacillus phage OmnioDeoPrimus, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

110. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MF288918 (Bacillus phage Bubs, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

111. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to KX961632 (Bacillus phage SBP8a, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

112. spacer 1.5|349|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to MG592459 (Vibrio phage 1.084.O._10N.261.49.F5, partial genome) position: , mismatch: 7, identity: 0.767

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tattcatttatctcctcctaaataaaatcc	Protospacer
*  *..*******.****.**********

113. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016726 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08A, complete sequence) position: , mismatch: 8, identity: 0.733

cttaaagttgtcaacttctattttttatat	CRISPR spacer
tatcttgttctcaccttctattttttataa	Protospacer
. *   *** *** ***************

114. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023393 (Lactococcus raffinolactis strain WiKim0068 plasmid pWiKim0068-1, complete sequence) position: , mismatch: 8, identity: 0.733

cttaaagttgtcaacttctattttttatat	CRISPR spacer
tatcttgttctcaccttctattttttataa	Protospacer
. *   *** *** ***************

115. spacer 1.3|217|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034167 (Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-3, complete sequence) position: , mismatch: 9, identity: 0.7

cttaaagttgtcaacttctattttttatat	CRISPR spacer
agaggagttgtcaaattctatttttttatt	Protospacer
   ..********* ***********   *

116. spacer 3.7|809724|35|NZ_HG813249|CRISPRCasFinder matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 9, identity: 0.743

tctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tccgtaaaatcaaaagtatcatcgattttatgata	Protospacer
**.******************* **  . **  *

117. spacer 4.15|826126|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

agaaaaaaaacatctttccaatttgttgttttgc-----	CRISPR spacer
aagaaaaaaacatatttccaatt-----ttttccaaaaa	Protospacer
*..********** *********     **** *

118. spacer 4.20|826447|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 9, identity: 0.743

gcttttttcaacaattttatcaccagatgtcatta	CRISPR spacer
agttttttcaacaattttatgaacagataattttt	Protospacer
. ****************** * *****. . **

119. spacer 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MK448625 (Streptococcus satellite phage Javan738, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

120. spacer 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

121. spacer 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtctgaactatgaggacttagaaagtgaagacctg	Protospacer
 *.**** ****************.****.*

122. spacer 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

123. spacer 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

124. spacer 4.33|827292|35|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

125. spacer 3.2|809725|34|NZ_HG813249|PILER-CR,CRT matches to MK044828 (Streptococcus phage 33888, complete genome) position: , mismatch: 10, identity: 0.706

ctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tgggaaaatcaaaagtatcaaagtaacagatgta	Protospacer
. * **************** ** ****. . *

126. spacer 4.30|827098|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034816 (Paracoccus sp. Arc7-R13 plasmid unnamed6, complete sequence) position: , mismatch: 11, identity: 0.676

caagatatgctagaaatggcgcaaatagcgcgcg	CRISPR spacer
gtccggctgcttgaaatggcgcagatagcgcgtc	Protospacer
    .  **** ***********.********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

406594 : 413119

Listeria_phage(33.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721739.1\|406594_407047_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|407052_407388_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003732219.1\|407604_408033_+	hypothetical protein	NA	NA	NA	NA
WP_031669175.1\|408044_408461_+	hypothetical protein	A8ASQ1	Listeria_phage	3.8e-20	38.6
WP_003733902.1\|408738_409128_+	DUF5072 family protein	NA	NA	NA	NA
WP_003721744.1\|409140_409653_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003721745.1\|409700_410003_+	hypothetical protein	NA	NA	NA	NA
WP_072217178.1\|410044_410449_+	phenylalanine racemase	NA	NA	NA	NA
WP_031669176.1\|410435_412304_+	membrane protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_031669177.1\|412300_413119_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	9.4e-39	35.0

DBSCAN-SWA_2

1400310 : 1407733

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721506.1\|1400310_1400694_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
WP_015454559.1\|1400715_1401699_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.1e-12	34.6
WP_014930875.1\|1401713_1402727_+	glycosyltransferase	A0A1V0SAH6	Catovirus	6.0e-11	32.0
WP_003721509.1\|1402935_1404426_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_015454563.1\|1404437_1405262_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	3.3e-68	52.9
WP_031669482.1\|1405274_1405583_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_031669483.1\|1405643_1406048_+	PTS lactose transporter subunit IIBC	NA	NA	NA	NA
WP_020246560.1\|1406176_1407733_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.3e-17	28.1

DBSCAN-SWA_3

1496866 : 1600633

112

Listeria_phage(79.37%)

capsid,transposase,portal,integrase,tRNA,holin,terminase,tail,protease

attL 1504142:1504158|attR 1543291:1543307

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721619.1\|1496866_1497919_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.3e-29	34.9
WP_031669510.1\|1497918_1500327_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_014600776.1\|1500487_1501189_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-33	35.4
WP_015454628.1\|1501202_1504613_+	FtsX-like permease family protein	NA	NA	NA	NA
1504142:1504158	attL	NA	NA	NA	NA
WP_003721623.1\|1504710_1505163_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_031669512.1\|1505178_1508379_+	MMPL family transporter	NA	NA	NA	NA
WP_015454632.1\|1508485_1509160_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	3.7e-49	47.3
WP_072217174.1\|1509196_1510123_-	ribonuclease HIII	NA	NA	NA	NA
WP_003740576.1\|1510276_1510540_+	cell division protein ZapA	NA	NA	NA	NA
WP_003723849.1\|1510539_1511082_+	CvpA family protein	NA	NA	NA	NA
WP_015454633.1\|1511174_1512887_+	DNA polymerase/3'-5' exonuclease PolX	A0A2H4UV14	Bodo_saltans_virus	1.1e-17	24.8
WP_015454634.1\|1512909_1515267_+	endonuclease MutS2	Q94M10	Lactobacillus_phage	1.0e-21	50.4
WP_003723853.1\|1515347_1515659_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	5.4e-19	39.6
WP_003732777.1\|1515734_1517546_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_003732778.1\|1517734_1518949_+	aspartate kinase	NA	NA	NA	NA
WP_003733801.1\|1519004_1519499_-	YslB family protein	NA	NA	NA	NA
WP_003723856.1\|1519646_1520447_+	glutamate racemase	NA	NA	NA	NA
WP_031669515.1\|1520459_1521206_+	ribonuclease PH	NA	NA	NA	NA
WP_012951514.1\|1521209_1521821_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_015454643.1\|1521857_1522382_+	metallophosphoesterase	NA	NA	NA	NA
WP_031660124.1\|1522667_1523822_-\|integrase	site-specific integrase	A0A059T688	Listeria_phage	1.1e-207	94.8
WP_003730990.1\|1523953_1524568_-	hypothetical protein	A0A059T7Z1	Listeria_phage	7.7e-78	77.0
WP_003730991.1\|1524618_1525071_-	ImmA/IrrE family metallo-endopeptidase	R4IBK9	Listeria_phage	4.8e-77	90.0
WP_003730992.1\|1525087_1525411_-	helix-turn-helix transcriptional regulator	A0A059T6G1	Listeria_phage	7.2e-35	71.0
WP_003730994.1\|1525809_1526013_-	hypothetical protein	NA	NA	NA	NA
WP_003730995.1\|1526079_1526271_+	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	5.4e-22	87.1
WP_003730996.1\|1526292_1526535_+	hypothetical protein	A8ATD2	Listeria_phage	3.9e-41	93.8
WP_003730997.1\|1526537_1526723_+	hypothetical protein	A8ATD3	Listeria_phage	3.7e-28	98.4
WP_012951522.1\|1527460_1527703_+	hypothetical protein	NA	NA	NA	NA
WP_003731843.1\|1527988_1528204_+	hypothetical protein	NA	NA	NA	NA
WP_031694757.1\|1528281_1528857_+	DUF1642 domain-containing protein	B6D7L5	Listeria_phage	6.4e-26	41.5
WP_003731819.1\|1528853_1529120_+	hypothetical protein	R4IBL5	Listeria_phage	1.9e-33	84.9
WP_003747322.1\|1529116_1529377_+	DUF3850 domain-containing protein	A0A059T7N3	Listeria_phage	3.1e-20	65.3
WP_168169256.1\|1529367_1529535_+	hypothetical protein	NA	NA	NA	NA
WP_077913499.1\|1529590_1529788_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_031669967.1\|1530039_1530603_+	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	2.4e-33	42.2
WP_009912778.1\|1530661_1531177_+	hypothetical protein	C9E2P0	Enterococcus_phage	1.8e-32	45.5
WP_102585567.1\|1531334_1531826_+	DUF1642 domain-containing protein	R4IBV9	Listeria_phage	2.6e-28	69.2
WP_031669126.1\|1531826_1532249_+	hypothetical protein	Q8W5W4	Listeria_phage	1.5e-69	95.0
WP_003731667.1\|1532245_1532419_+	hypothetical protein	Q8W5W3	Listeria_phage	6.8e-24	100.0
WP_009911360.1\|1532415_1532793_+	hypothetical protein	Q8W5W2	Listeria_phage	5.1e-40	66.9
WP_003731665.1\|1532796_1533276_+	siphovirus Gp157 family protein	R4IBM0	Listeria_phage	7.6e-57	76.7
WP_003731664.1\|1533295_1533985_+	AAA family ATPase	R4IDY8	Listeria_phage	1.1e-128	96.9
WP_031669966.1\|1534048_1535305_+	DEAD/DEAH box helicase	Q8W5V9	Listeria_phage	2.7e-234	96.2
WP_009928019.1\|1535329_1535815_+	DUF669 domain-containing protein	A0A059T5G4	Listeria_phage	2.9e-88	100.0
WP_031669965.1\|1535837_1538111_+	DNA primase	A0A059T6A4	Listeria_phage	0.0e+00	99.9
WP_031669964.1\|1538397_1538712_+	VRR-NUC domain-containing protein	Q8W5V6	Listeria_phage	1.7e-52	98.1
WP_031659886.1\|1538824_1539358_+	DUF3310 domain-containing protein	A8ATF5	Listeria_phage	2.2e-76	78.9
WP_009915300.1\|1539358_1539514_+	hypothetical protein	NA	NA	NA	NA
WP_003731655.1\|1539575_1539803_+	hypothetical protein	NA	NA	NA	NA
WP_009917712.1\|1539815_1540241_+	DUF722 domain-containing protein	A0A059T6H4	Listeria_phage	8.0e-74	100.0
WP_031669127.1\|1540338_1541082_+	DUF559 domain-containing protein	NA	NA	NA	NA
WP_026749920.1\|1541541_1541868_+	hypothetical protein	A0A059T5G5	Listeria_phage	8.3e-55	98.1
WP_009928009.1\|1541867_1542182_+	HNH endonuclease	A8ATF8	Listeria_phage	3.8e-57	99.0
WP_025981612.1\|1542230_1542587_+\|terminase	P27 family phage terminase small subunit	A8AT94	Listeria_phage	1.3e-45	98.0
WP_031668026.1\|1542583_1544227_+\|terminase	terminase large subunit	A8AT95	Listeria_phage	0.0e+00	98.2
1543291:1543307	attR	NA	NA	NA	NA
WP_038409761.1\|1544238_1545369_+\|portal	phage portal protein	A0A059T6F0	Listeria_phage	2.2e-211	97.6
WP_031669962.1\|1545365_1546163_+\|protease	Clp protease ClpP	A0A059T5F2	Listeria_phage	1.1e-143	99.6
WP_031669961.1\|1546189_1547341_+\|capsid	phage major capsid protein	A0A059T678	Listeria_phage	1.8e-213	99.7
WP_167801685.1\|1547347_1547518_+	hypothetical protein	A0A059T7Y2	Listeria_phage	3.1e-21	98.2
WP_031669960.1\|1547527_1547827_+	hypothetical protein	A0A059T7R0	Listeria_phage	1.5e-47	99.0
WP_014929549.1\|1547810_1548176_+	hypothetical protein	A0A059T6F2	Listeria_phage	2.9e-64	100.0
WP_014929550.1\|1548172_1548574_+	hypothetical protein	A0A059T5F3	Listeria_phage	1.8e-67	97.7
WP_014929551.1\|1548570_1548954_+	hypothetical protein	A0A059T681	Listeria_phage	2.3e-64	95.3
WP_031669959.1\|1548974_1549562_+\|tail	phage tail protein	A0A059T7Y4	Listeria_phage	1.2e-107	99.5
WP_014929553.1\|1549632_1549965_+	hypothetical protein	A0A059T7R2	Listeria_phage	2.5e-51	96.4
WP_009931626.1\|1550015_1550177_+	hypothetical protein	A0A059T6F4	Listeria_phage	4.3e-20	98.0
WP_031669958.1\|1550180_1555100_+\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	96.5
WP_023553822.1\|1555092_1556742_+\|tail	phage tail family protein	A0A059T682	Listeria_phage	0.0e+00	99.6
WP_031669134.1\|1556754_1559049_+\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	0.0e+00	98.3
WP_031694761.1\|1559038_1560133_+	hypothetical protein	A0A059T7R4	Listeria_phage	3.3e-204	99.5
WP_003722523.1\|1560171_1560537_+	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
WP_003722522.1\|1560549_1560831_+\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
WP_003733663.1\|1560830_1561676_+	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	2.7e-137	94.7
WP_003722520.1\|1561716_1562490_-	DUF3825 domain-containing protein	A8ATW5	Listeria_phage	9.5e-150	100.0
WP_038409764.1\|1562763_1563261_-	AP2 domain-containing protein	A8ATW6	Listeria_phage	1.9e-90	99.4
WP_038409766.1\|1563285_1563735_-	anti-CRISPR protein AcrIIA1	A8ATW7	Listeria_phage	1.6e-72	96.6
WP_003731276.1\|1563735_1563987_-	hypothetical protein	A8ATW8	Listeria_phage	2.0e-40	100.0
WP_003731277.1\|1564018_1564252_-	hypothetical protein	A8ATW9	Listeria_phage	4.3e-13	100.0
WP_003723289.1\|1564875_1565763_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_031669606.1\|1565863_1567345_+	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_031669607.1\|1567392_1568235_-	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA
WP_031669608.1\|1568732_1571720_+	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_003723285.1\|1571719_1572196_+	DUF1641 domain-containing protein	NA	NA	NA	NA
WP_003723284.1\|1572257_1573043_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_012952041.1\|1573089_1573767_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.4e-58	48.0
WP_003723282.1\|1573763_1575143_+	HAMP domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	2.6e-57	47.1
WP_003723281.1\|1575221_1576310_+	ABC transporter permease	NA	NA	NA	NA
WP_003723280.1\|1576309_1576978_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.0e-38	42.0
WP_003723279.1\|1577046_1577208_+	hypothetical protein	NA	NA	NA	NA
WP_003723278.1\|1577240_1577534_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003733263.1\|1577544_1578420_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_003733264.1\|1578534_1579362_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_015455260.1\|1579582_1584175_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_003723624.1\|1584300_1585212_+	cation transporter	NA	NA	NA	NA
WP_003723623.1\|1585260_1585533_+	hypothetical protein	NA	NA	NA	NA
WP_003733266.1\|1585629_1586628_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_003723621.1\|1586630_1587155_+	dihydrofolate reductase	NA	NA	NA	NA
WP_015455258.1\|1587155_1587788_+	nicotinamidase	NA	NA	NA	NA
WP_003723619.1\|1587811_1588426_+	SdpI family protein	NA	NA	NA	NA
WP_014601155.1\|1588561_1590223_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003729275.1\|1590377_1590701_+	YxeA family protein	NA	NA	NA	NA
WP_003723615.1\|1590723_1590924_+	hypothetical protein	NA	NA	NA	NA
WP_009924631.1\|1591241_1592078_+	lipoyl-[GcvH]:protein N-lipoyltransferase	NA	NA	NA	NA
WP_009924630.1\|1592092_1593415_+	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	2.6e-30	33.2
WP_003723612.1\|1593449_1593635_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_003723611.1\|1593709_1594363_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_003723610.1\|1594440_1594890_+	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_003723609.1\|1594886_1596557_+\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_003723608.1\|1596922_1597459_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA
WP_003723607.1\|1597826_1599425_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	6.5e-153	52.2
WP_096832446.1\|1599494_1600633_-\|transposase	IS3 family transposase	A0A0N9SIX5	Staphylococcus_phage	4.1e-48	69.1

DBSCAN-SWA_4

1679052 : 1739750

Listeria_phage(86.96%)

capsid,portal,integrase,holin,plate,terminase,tail

attL 1695594:1695609|attR 1717392:1717407

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722616.1\|1679052_1679406_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_003722615.1\|1679592_1680531_+	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_003722614.1\|1680616_1681450_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_003722613.1\|1681493_1682147_+	pyrophosphatase PpaX	NA	NA	NA	NA
WP_009924991.1\|1682150_1682648_+	acyltransferase	NA	NA	NA	NA
WP_003732497.1\|1682733_1684209_+	hypothetical protein	NA	NA	NA	NA
WP_003722610.1\|1684287_1685247_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7
WP_009924988.1\|1685365_1686349_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	2.6e-51	37.2
WP_020246727.1\|1686365_1687427_+	galactose mutarotase	NA	NA	NA	NA
WP_031669377.1\|1687468_1689199_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	3.9e-175	53.8
WP_003722606.1\|1689306_1690182_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_003722605.1\|1690183_1691152_+	YvcK family protein	A1IMD5	Streptococcus_phage	6.7e-68	43.3
WP_003722604.1\|1691159_1692131_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003722603.1\|1692157_1693174_+	NADPH dehydrogenase NamA	NA	NA	NA	NA
WP_003722602.1\|1693226_1694393_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA
WP_003722601.1\|1694610_1696002_+	amino acid permease	NA	NA	NA	NA
1695594:1695609	attL	NA	NA	NA	NA
WP_003722600.1\|1696047_1696644_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	6.6e-58	57.4
WP_015455208.1\|1696800_1698237_+	polysaccharide monooxygenase	A0A2D1GD28	Mycobacterium_phage	4.4e-07	29.1
WP_031669379.1\|1698512_1699643_-\|integrase	site-specific integrase	A8ATX2	Listeria_phage	2.3e-200	93.4
WP_031669381.1\|1699706_1700414_-	hypothetical protein	A0A0B5CTT6	Listeria_phage	3.1e-91	74.0
WP_031669383.1\|1700434_1701157_-	hypothetical protein	A0A059T7P9	Listeria_phage	8.7e-105	99.6
WP_003747290.1\|1701172_1701391_-	hypothetical protein	A0A059T6E3	Listeria_phage	2.4e-26	81.9
WP_012582373.1\|1701446_1701614_-	hypothetical protein	NA	NA	NA	NA
WP_031669386.1\|1701769_1702246_-	helix-turn-helix transcriptional regulator	A8ASM2	Listeria_phage	4.5e-57	80.3
WP_012582375.1\|1702408_1702642_+	helix-turn-helix transcriptional regulator	A8ASM3	Listeria_phage	1.6e-31	95.9
WP_003770002.1\|1702662_1702848_+	hypothetical protein	NA	NA	NA	NA
WP_046155079.1\|1702807_1703119_-	hypothetical protein	NA	NA	NA	NA
WP_003727743.1\|1703136_1703403_+	hypothetical protein	A0A059T7Q1	Listeria_phage	2.5e-41	100.0
WP_003727745.1\|1703627_1703822_+	hypothetical protein	A0A059T6E5	Listeria_phage	6.3e-26	96.9
WP_003733634.1\|1703833_1704070_+	hypothetical protein	A0A059T5E9	Listeria_phage	3.3e-37	100.0
WP_003727747.1\|1704066_1704348_+	hypothetical protein	A0A0B5CTX3	Listeria_phage	1.0e-40	100.0
WP_015455157.1\|1704349_1704547_-	hypothetical protein	Q9T179	Listeria_phage	6.2e-21	100.0
WP_031644189.1\|1704610_1705390_+	phage antirepressor KilAC domain-containing protein	A0A059T6E7	Listeria_phage	7.6e-139	96.5
WP_031669393.1\|1705511_1706036_+	hypothetical protein	A8ASM7	Listeria_phage	8.3e-81	90.8
WP_031669394.1\|1706041_1706278_+	DUF771 domain-containing protein	A8ATY2	Listeria_phage	1.9e-37	88.5
WP_003733629.1\|1706382_1706571_+	hypothetical protein	Q9T175	Listeria_phage	1.2e-21	80.6
WP_031669395.1\|1706802_1707762_+	YqaJ viral recombinase family protein	Q9T173	Listeria_phage	2.8e-151	83.1
WP_031644198.1\|1707764_1708580_+	recombinase RecT	Q9T172	Listeria_phage	1.7e-144	94.8
WP_031641572.1\|1708599_1709523_+	DnaD domain-containing protein	A8ATY7	Listeria_phage	2.3e-150	90.6
WP_014930204.1\|1709519_1709687_+	hypothetical protein	A8ASN5	Listeria_phage	1.6e-17	80.0
WP_031669397.1\|1709697_1709907_+	hypothetical protein	A8ASN7	Listeria_phage	1.6e-14	64.2
WP_077315975.1\|1709962_1710205_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_031669401.1\|1710454_1710856_+	hypothetical protein	R4ICD6	Listeria_phage	1.8e-30	52.9
WP_031669403.1\|1711409_1711892_+	single-stranded DNA-binding protein	A0A059T5E0	Listeria_phage	2.0e-57	71.2
WP_031669404.1\|1711910_1712093_+	hypothetical protein	A8ASP6	Listeria_phage	2.2e-17	81.0
WP_031669406.1\|1712037_1712442_+	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	2.2e-57	83.6
WP_031669408.1\|1712445_1712829_+	DUF2481 family protein	A8ASP8	Listeria_phage	2.3e-35	56.7
WP_031669409.1\|1712992_1713427_+	hypothetical protein	A8ASQ1	Listeria_phage	3.0e-68	88.9
WP_031669411.1\|1713687_1714245_+	hypothetical protein	A8ASQ2	Listeria_phage	1.6e-82	87.1
WP_096827923.1\|1714333_1714771_+	hypothetical protein	A8ASQ1	Listeria_phage	3.3e-14	39.4
WP_031669414.1\|1714814_1715357_+\|terminase	terminase small subunit	A0A0B5CU16	Listeria_phage	3.1e-78	89.8
WP_031669417.1\|1715325_1716657_+\|terminase	PBSX family phage terminase large subunit	A8ASJ2	Listeria_phage	1.6e-250	94.1
WP_031669418.1\|1716669_1718160_+\|portal	phage portal protein	Q9T1C0	Listeria_phage	7.2e-279	98.2
1717392:1717407	attR	NA	NA	NA	NA
WP_031669420.1\|1718165_1719305_+\|capsid	phage minor capsid protein	A0A0B5D147	Listeria_phage	3.2e-202	95.8
WP_031669422.1\|1719383_1719953_+	phage scaffolding protein	A0A0B5CTV7	Listeria_phage	3.1e-81	98.4
WP_031669424.1\|1719976_1720876_+\|capsid	phage major capsid protein	A0A0B5CU19	Listeria_phage	2.0e-167	99.7
WP_072217189.1\|1720875_1721034_+	hypothetical protein	A8ASJ7	Listeria_phage	5.1e-18	98.1
WP_031669425.1\|1721035_1721431_+	hypothetical protein	A0A0B5D0F6	Listeria_phage	1.5e-63	96.2
WP_031669427.1\|1721430_1721793_+	hypothetical protein	A0A059T658	Listeria_phage	6.0e-62	95.8
WP_031669428.1\|1721792_1722131_+	hypothetical protein	Q9T1B3	Listeria_phage	2.9e-58	99.1
WP_003727788.1\|1722130_1722538_+	hypothetical protein	Q9T1B2	Listeria_phage	9.0e-67	98.5
WP_031669430.1\|1722540_1722978_+	hypothetical protein	A0A0B5CYN3	Listeria_phage	7.2e-78	98.6
WP_031669432.1\|1722907_1723240_+	Ig domain-containing protein	Q9T1B0	Listeria_phage	7.7e-48	97.2
WP_031669433.1\|1723295_1723718_+\|tail	phage tail assembly chaperone	Q9T1A9	Listeria_phage	2.2e-68	97.1
WP_003735024.1\|1723723_1724323_+	hypothetical protein	A0A0B5CTW0	Listeria_phage	1.9e-76	72.0
WP_031669435.1\|1724333_1729718_+	tape measure protein	Q9T1A7	Listeria_phage	0.0e+00	89.7
WP_003722529.1\|1729719_1730538_+\|tail	phage tail family protein	Q9T1A6	Listeria_phage	6.8e-146	91.9
WP_031669437.1\|1730546_1731572_+\|tail	phage tail protein	Q9T1A5	Listeria_phage	8.1e-197	97.9
WP_003722527.1\|1731572_1732601_+	hypothetical protein	Q9T1A4	Listeria_phage	4.6e-192	100.0
WP_003722526.1\|1732600_1733674_+\|plate	phage baseplate upper protein	Q9T1A3	Listeria_phage	4.5e-198	100.0
WP_003722525.1\|1733685_1734003_+	hypothetical protein	Q9T1A2	Listeria_phage	6.2e-55	100.0
WP_003722524.1\|1734007_1734166_+	hypothetical protein	Q9T1A1	Listeria_phage	6.0e-19	100.0
WP_003722523.1\|1734193_1734559_+	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
WP_003722522.1\|1734571_1734853_+\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
WP_033919168.1\|1734852_1735698_+	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	2.6e-140	95.8
WP_010989943.1\|1736191_1736743_+	hypothetical protein	A8ASL6	Listeria_phage	7.4e-96	95.6
WP_009926666.1\|1736819_1737317_-	AP2 domain-containing protein	A8ATW6	Listeria_phage	1.8e-88	97.6
WP_031669445.1\|1737341_1737791_-	anti-CRISPR protein AcrIIA1	A8ATW7	Listeria_phage	6.9e-76	99.3
WP_003722517.1\|1737796_1738168_-	anti-CRISPR protein AcrIIA2	A0A059T5F6	Listeria_phage	5.3e-58	92.7
WP_009924649.1\|1738196_1738430_-	hypothetical protein	A8ATW9	Listeria_phage	9.2e-08	48.1
WP_009924650.1\|1738729_1738963_+	hypothetical protein	A8ATX0	Listeria_phage	3.3e-37	100.0
WP_003731279.1\|1738959_1739163_+	hypothetical protein	A8ATX1	Listeria_phage	2.7e-32	100.0
WP_003722598.1\|1739414_1739750_-	membrane protein	S5MNN8	Brevibacillus_phage	6.0e-16	76.6

DBSCAN-SWA_5

1841141 : 1879982

Listeria_phage(94.44%)

holin,terminase,tail,integrase

attL 1828504:1828518|attR 1842647:1842661

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1828504:1828518	attL	NA	NA	NA	NA
WP_003724018.1\|1841141_1842305_-\|integrase	site-specific integrase	S5MNZ2	Brevibacillus_phage	4.4e-50	31.2
WP_003724017.1\|1842367_1842973_-	hypothetical protein	NA	NA	NA	NA
1842647:1842661	attR	NA	NA	NA	NA
WP_003724016.1\|1843031_1843739_-	hypothetical protein	A0A0B5CTT6	Listeria_phage	2.8e-124	100.0
WP_003724015.1\|1843753_1844179_-	ImmA/IrrE family metallo-endopeptidase	A0A0B5CTZ7	Listeria_phage	2.2e-76	100.0
WP_003724014.1\|1844194_1844617_-	helix-turn-helix transcriptional regulator	A0A0B5CYL9	Listeria_phage	7.7e-69	98.6
WP_003733688.1\|1844782_1844992_+	helix-turn-helix domain-containing protein	A0A0B5D0D3	Listeria_phage	3.5e-30	95.6
WP_003733687.1\|1845012_1845207_+	hypothetical protein	A0A059T6E5	Listeria_phage	1.4e-25	95.3
WP_003733686.1\|1845218_1845503_+	hypothetical protein	A0A0B5D168	Listeria_phage	4.5e-41	85.1
WP_003722567.1\|1845528_1845810_+	hypothetical protein	A8ATX8	Listeria_phage	1.8e-37	95.7
WP_003733684.1\|1845811_1846009_-	hypothetical protein	Q9T179	Listeria_phage	4.0e-20	96.0
WP_003733682.1\|1846972_1847503_+	hypothetical protein	A0A0B5D173	Listeria_phage	2.7e-79	89.6
WP_003733681.1\|1847492_1847699_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003769989.1\|1847800_1847989_+	hypothetical protein	A8ATY3	Listeria_phage	2.5e-27	95.2
WP_009930470.1\|1848290_1848485_+	hypothetical protein	A0A059T6E8	Listeria_phage	1.8e-28	95.3
WP_003747311.1\|1848481_1848958_+	siphovirus Gp157 family protein	A0A059T5F1	Listeria_phage	7.1e-71	93.0
WP_003769987.1\|1848962_1849601_+	ERF family protein	A8ASN3	Listeria_phage	8.0e-78	74.8
WP_038409801.1\|1849614_1850532_+	DnaD domain-containing protein	A0A0B5D175	Listeria_phage	3.0e-126	84.1
WP_038409803.1\|1850528_1851809_+	DNA (cytosine-5-)-methyltransferase	A0A1X9I6Y5	Streptococcus_phage	1.2e-117	53.9
WP_038409805.1\|1851805_1852402_+	DUF1642 domain-containing protein	A8ATY9	Listeria_phage	3.1e-39	48.5
WP_038409806.1\|1852398_1852767_+	hypothetical protein	A8ASN9	Listeria_phage	6.5e-64	95.9
WP_077913500.1\|1852763_1853135_+	hypothetical protein	R4ICD6	Listeria_phage	1.2e-38	100.0
WP_038409807.1\|1853138_1853327_+	hypothetical protein	D7RWG4	Brochothrix_phage	4.4e-08	47.2
WP_038409808.1\|1853323_1853845_+	hypothetical protein	A8ASP2	Listeria_phage	1.6e-92	96.5
WP_038409811.1\|1853841_1854084_+	hypothetical protein	NA	NA	NA	NA
WP_038409814.1\|1854105_1854315_+	hypothetical protein	NA	NA	NA	NA
WP_038409816.1\|1854315_1854525_+	hypothetical protein	NA	NA	NA	NA
WP_038409818.1\|1854505_1854835_+	hypothetical protein	A8ATZ5	Listeria_phage	2.2e-07	89.7
WP_038409820.1\|1854827_1855016_+	hypothetical protein	NA	NA	NA	NA
WP_038409823.1\|1855012_1855414_+	hypothetical protein	A8ATZ6	Listeria_phage	6.0e-63	92.5
WP_038409826.1\|1855413_1855896_+	single-stranded DNA-binding protein	A8ASP5	Listeria_phage	7.2e-55	69.4
WP_038409828.1\|1855914_1856097_+	hypothetical protein	A8ASP6	Listeria_phage	3.8e-17	79.4
WP_038409830.1\|1856041_1856446_+	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	3.8e-57	84.3
WP_031645285.1\|1856449_1856842_+	DUF2481 family protein	A8ASP8	Listeria_phage	8.0e-20	45.0
WP_003722548.1\|1856860_1857016_+	hypothetical protein	A0A0B5D186	Listeria_phage	3.3e-22	96.1
WP_038409832.1\|1857103_1857676_+	sigma-70 family RNA polymerase sigma factor	A0A0B5D145	Listeria_phage	2.8e-90	87.9
WP_031670269.1\|1857833_1858466_+	hypothetical protein	A8AU05	Listeria_phage	4.0e-114	99.0
WP_012951944.1\|1858547_1858775_+	hypothetical protein	A8AU06	Listeria_phage	1.5e-34	100.0
WP_031641733.1\|1858814_1859600_+	hypothetical protein	A0A0B5CTX0	Listeria_phage	8.0e-128	95.9
WP_038409838.1\|1859538_1860858_+\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	1.7e-231	87.8
WP_023548504.1\|1860872_1862429_+	hypothetical protein	A0A0B5D0A6	Listeria_phage	1.9e-298	98.3
WP_023548506.1\|1862433_1863477_+	hypothetical protein	A0A0B5D111	Listeria_phage	3.7e-197	97.7
WP_003723788.1\|1863572_1864127_+	hypothetical protein	A8ATU9	Listeria_phage	8.8e-89	98.9
WP_003723787.1\|1864149_1865022_+	hypothetical protein	A0A0B5CTX8	Listeria_phage	2.3e-152	93.8
WP_003723786.1\|1865035_1865191_+	hypothetical protein	A0A0B5CYK6	Listeria_phage	1.0e-18	98.0
WP_003723785.1\|1865191_1865545_+	hypothetical protein	A8ATV2	Listeria_phage	8.4e-61	99.1
WP_003733695.1\|1865544_1865910_+	hypothetical protein	A8ATV3	Listeria_phage	9.9e-65	99.2
WP_003733696.1\|1865899_1866217_+	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	4.6e-50	96.2
WP_003725064.1\|1866213_1866585_+	hypothetical protein	A8ATV5	Listeria_phage	8.5e-64	100.0
WP_003733697.1\|1866589_1867279_+	Ig domain-containing protein	A8ATV6	Listeria_phage	2.8e-100	85.6
WP_038409856.1\|1867334_1867766_+	hypothetical protein	A8ATV7	Listeria_phage	2.6e-72	97.9
WP_038409859.1\|1867798_1868074_+	hypothetical protein	A0A0B5D116	Listeria_phage	8.0e-43	98.9
WP_038409862.1\|1868078_1872878_+\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	85.9
WP_023552439.1\|1872874_1874443_+\|tail	phage tail family protein	A8ATW0	Listeria_phage	1.5e-303	99.2
WP_038409865.1\|1874455_1876618_+\|tail	phage tail protein	A8ATW1	Listeria_phage	0.0e+00	96.4
WP_038409867.1\|1876669_1876975_+	hypothetical protein	A0A059T5E6	Listeria_phage	4.0e-43	99.0
WP_038409869.1\|1876974_1877235_+\|holin	phage holin	A0A059T684	Listeria_phage	2.2e-34	83.0
WP_038409871.1\|1877234_1878038_+	N-acetylmuramoyl-L-alanine amidase	A0A059T7X1	Listeria_phage	7.5e-81	81.1
WP_038409916.1\|1878078_1878852_-	DUF3825 domain-containing protein	A8ATW5	Listeria_phage	2.1e-149	99.6
WP_012951561.1\|1879125_1879308_-	hypothetical protein	A0A059T7Z0	Listeria_phage	2.3e-22	96.6
WP_012951563.1\|1879748_1879982_+	hypothetical protein	A8ATC5	Listeria_phage	1.6e-36	98.7

DBSCAN-SWA_6

1899109 : 1944379

Bacillus_virus(23.08%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003723562.1\|1899109_1900249_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003723563.1\|1900329_1900725_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|1900875_1901091_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003732794.1\|1901208_1901742_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003732795.1\|1901759_1902425_+	hypothetical protein	NA	NA	NA	NA
WP_003732796.1\|1902686_1903625_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|1903739_1905023_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|1905208_1906468_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_003723887.1\|1906586_1907153_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_003723888.1\|1907187_1907757_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003723889.1\|1907858_1908401_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003723890.1\|1908410_1909274_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003723891.1\|1909270_1910056_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	3.0e-26	39.2
WP_003723892.1\|1910189_1911050_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_003732799.1\|1911320_1913399_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	3.2e-107	37.5
WP_015454658.1\|1913461_1914766_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_003724000.1\|1915048_1915951_+	tyrosine recombinase XerC	A0A097EYL9	Mycobacterium_phage	1.2e-13	28.6
WP_003724001.1\|1915971_1916511_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_003732800.1\|1916524_1917934_+\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	3.7e-43	28.7
WP_003726695.1\|1917954_1918734_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_003724129.1\|1918836_1919256_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003724130.1\|1919277_1919589_+	hypothetical protein	NA	NA	NA	NA
WP_003724131.1\|1919591_1920464_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003724132.1\|1920505_1921102_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003732802.1\|1921259_1921667_+	CoA-binding protein	NA	NA	NA	NA
WP_003723731.1\|1921847_1923815_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	6.7e-123	42.5
WP_003723732.1\|1923811_1926271_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	1.1e-101	31.6
WP_003723733.1\|1926353_1926821_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_031668943.1\|1927150_1928920_+	lmo1289 family class 1 internalin	NA	NA	NA	NA
WP_031668945.1\|1929251_1931054_+	class 1 internalin InlK	NA	NA	NA	NA
WP_003723736.1\|1931087_1932956_-	peptidoglycan O-acetyltransferase OatA	B5WZU0	Pseudomonas_phage	6.5e-43	31.9
WP_003723737.1\|1933168_1933867_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	1.3e-12	32.4
WP_003723738.1\|1934099_1935776_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_012951578.1\|1935901_1936819_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003719566.1\|1936941_1937175_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_003733804.1\|1937285_1938509_+	GTPase HflX	NA	NA	NA	NA
WP_010989728.1\|1938501_1939728_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_003719570.1\|1939930_1940299_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003723435.1\|1940369_1941704_+	type I glutamate--ammonia ligase	A0A1V0SJ53	Klosneuvirus	2.0e-06	26.4
WP_003723436.1\|1941847_1943143_+	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	1.8e-145	61.6
WP_096933313.1\|1943241_1944379_+\|transposase	IS3-like element ISLmo1 family transposase	A0A0N9SIX5	Staphylococcus_phage	5.3e-48	69.1

DBSCAN-SWA_7

2454180 : 2462466

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722243.1\|2454180_2454747_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9
WP_003733242.1\|2454743_2455793_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	4.6e-62	43.5
WP_003722245.1\|2455811_2457239_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_031669014.1\|2457223_2459443_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.5e-160	41.4
WP_003722247.1\|2459435_2460119_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_015454911.1\|2460122_2460368_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_014931516.1\|2460379_2461093_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	8.8e-41	37.8
WP_003733238.1\|2461173_2462466_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.2e-17	32.6

Anti-CRISPR protein detection

Acr_ID: NZ_HG813249.1|WP_003731276.1|1563735_1563987_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_HG813249.1|WP_003770002.1|1702662_1702848_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_HG813249.1|WP_046155079.1|1702807_1703119_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_HG813249.1|WP_003747290.1|1701172_1701391_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_HG813249.1|WP_012582373.1|1701446_1701614_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_HG813249.1|WP_003733687.1|1845012_1845207_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_HG813249.1|WP_003733686.1|1845218_1845503_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_HG813249.1|WP_003731276.1|1563735_1563987_-|hypothetical-protein

1563735_1563987_-

83 aa aa

AcrIIA12

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3641\|WP_003731276.1\|AcrIIA12\|II-A\|Verified\|Listeria-monocytogenes	1.0	1	1.0

1496866-1600633

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_HG813249_1	TypeII	1.5\|349\|30\|NZ_HG813249\|PILER-CR,CRISPRCasFinder,CRT	349-378	30	1558031-1558002	2
NZ_HG813249_3	Unclear	3.3\|809789\|34\|NZ_HG813249\|PILER-CR,CRT	809789-809822	34	1561062-1561029	2
NZ_HG813249_3	Unclear	3.8\|809788\|35\|NZ_HG813249\|CRISPRCasFinder	809788-809822	35	1561063-1561029	2

1. spacer 1.5|349|30|NZ_HG813249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG813249 position: 1558031-1558002, mismatch: 2

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattatttattttctcccaaataaaatca	Protospacer
*****.*****.******************

2. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to NZ_HG813249 position: 1561062-1561029, mismatch: 2

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgtcatgacgaaatctagcgcttgtccaactaa	Protospacer
***.************************ *****

3. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to NZ_HG813249 position: 1561063-1561029, mismatch: 2

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgtcatgacgaaatctagcgcttgtccaactaa	Protospacer
****.************************ *****

NZ_HG813249.1|WP_003770002.1|1702662_1702848_+|hypothetical-protein

1702662_1702848_+

61 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.5172413793103449	1.0

1679052-1739750

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_HG813249_3	Unclear	3.3\|809789\|34\|NZ_HG813249\|PILER-CR,CRT	809789-809822	34	1735084-1735051	0
NZ_HG813249_3	Unclear	3.4\|809853\|35\|NZ_HG813249\|PILER-CR,CRT	809853-809887	35	1735586-1735620	1
NZ_HG813249_3	Unclear	3.8\|809788\|35\|NZ_HG813249\|CRISPRCasFinder	809788-809822	35	1735085-1735051	0
NZ_HG813249_3	Unclear	3.9\|809852\|36\|NZ_HG813249\|CRISPRCasFinder	809852-809887	36	1735585-1735620	1
NZ_HG813249_4	Unclear	4.12\|825932\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	825932-825967	36	1733355-1733390	0
NZ_HG813249_4	Unclear	4.16\|826189\|34\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	826189-826222	34	1733964-1733997	0

1. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to NZ_HG813249 position: 1735084-1735051, mismatch: 0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

2. spacer 3.4|809853|35|NZ_HG813249|PILER-CR,CRT matches to NZ_HG813249 position: 1735586-1735620, mismatch: 1

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaact	Protospacer
*******************.***************

3. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to NZ_HG813249 position: 1735085-1735051, mismatch: 0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

4. spacer 3.9|809852|36|NZ_HG813249|CRISPRCasFinder matches to NZ_HG813249 position: 1735585-1735620, mismatch: 1

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

5. spacer 4.12|825932|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG813249 position: 1733355-1733390, mismatch: 0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

6. spacer 4.16|826189|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG813249 position: 1733964-1733997, mismatch: 0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

NZ_HG813249.1|WP_046155079.1|1702807_1703119_-|hypothetical-protein

1702807_1703119_-

103 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.5172413793103449	1.0

1679052-1739750

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_HG813249_3	Unclear	3.3\|809789\|34\|NZ_HG813249\|PILER-CR,CRT	809789-809822	34	1735084-1735051	0
NZ_HG813249_3	Unclear	3.4\|809853\|35\|NZ_HG813249\|PILER-CR,CRT	809853-809887	35	1735586-1735620	1
NZ_HG813249_3	Unclear	3.8\|809788\|35\|NZ_HG813249\|CRISPRCasFinder	809788-809822	35	1735085-1735051	0
NZ_HG813249_3	Unclear	3.9\|809852\|36\|NZ_HG813249\|CRISPRCasFinder	809852-809887	36	1735585-1735620	1
NZ_HG813249_4	Unclear	4.12\|825932\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	825932-825967	36	1733355-1733390	0
NZ_HG813249_4	Unclear	4.16\|826189\|34\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	826189-826222	34	1733964-1733997	0

1. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to NZ_HG813249 position: 1735084-1735051, mismatch: 0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

2. spacer 3.4|809853|35|NZ_HG813249|PILER-CR,CRT matches to NZ_HG813249 position: 1735586-1735620, mismatch: 1

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaact	Protospacer
*******************.***************

3. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to NZ_HG813249 position: 1735085-1735051, mismatch: 0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

4. spacer 3.9|809852|36|NZ_HG813249|CRISPRCasFinder matches to NZ_HG813249 position: 1735585-1735620, mismatch: 1

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

5. spacer 4.12|825932|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG813249 position: 1733355-1733390, mismatch: 0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

6. spacer 4.16|826189|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG813249 position: 1733964-1733997, mismatch: 0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

NZ_HG813249.1|WP_003747290.1|1701172_1701391_-|hypothetical-protein

1701172_1701391_-

72 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.41818181818181815	0.9482758620689655

1679052-1739750

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_HG813249_3	Unclear	3.3\|809789\|34\|NZ_HG813249\|PILER-CR,CRT	809789-809822	34	1735084-1735051	0
NZ_HG813249_3	Unclear	3.4\|809853\|35\|NZ_HG813249\|PILER-CR,CRT	809853-809887	35	1735586-1735620	1
NZ_HG813249_3	Unclear	3.8\|809788\|35\|NZ_HG813249\|CRISPRCasFinder	809788-809822	35	1735085-1735051	0
NZ_HG813249_3	Unclear	3.9\|809852\|36\|NZ_HG813249\|CRISPRCasFinder	809852-809887	36	1735585-1735620	1
NZ_HG813249_4	Unclear	4.12\|825932\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	825932-825967	36	1733355-1733390	0
NZ_HG813249_4	Unclear	4.16\|826189\|34\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	826189-826222	34	1733964-1733997	0

1. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to NZ_HG813249 position: 1735084-1735051, mismatch: 0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

2. spacer 3.4|809853|35|NZ_HG813249|PILER-CR,CRT matches to NZ_HG813249 position: 1735586-1735620, mismatch: 1

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaact	Protospacer
*******************.***************

3. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to NZ_HG813249 position: 1735085-1735051, mismatch: 0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

4. spacer 3.9|809852|36|NZ_HG813249|CRISPRCasFinder matches to NZ_HG813249 position: 1735585-1735620, mismatch: 1

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

5. spacer 4.12|825932|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG813249 position: 1733355-1733390, mismatch: 0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

6. spacer 4.16|826189|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG813249 position: 1733964-1733997, mismatch: 0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

NZ_HG813249.1|WP_012582373.1|1701446_1701614_-|hypothetical-protein

1701446_1701614_-

55 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.41818181818181815	0.9482758620689655

1679052-1739750

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_HG813249_3	Unclear	3.3\|809789\|34\|NZ_HG813249\|PILER-CR,CRT	809789-809822	34	1735084-1735051	0
NZ_HG813249_3	Unclear	3.4\|809853\|35\|NZ_HG813249\|PILER-CR,CRT	809853-809887	35	1735586-1735620	1
NZ_HG813249_3	Unclear	3.8\|809788\|35\|NZ_HG813249\|CRISPRCasFinder	809788-809822	35	1735085-1735051	0
NZ_HG813249_3	Unclear	3.9\|809852\|36\|NZ_HG813249\|CRISPRCasFinder	809852-809887	36	1735585-1735620	1
NZ_HG813249_4	Unclear	4.12\|825932\|36\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	825932-825967	36	1733355-1733390	0
NZ_HG813249_4	Unclear	4.16\|826189\|34\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	826189-826222	34	1733964-1733997	0

1. spacer 3.3|809789|34|NZ_HG813249|PILER-CR,CRT matches to NZ_HG813249 position: 1735084-1735051, mismatch: 0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

2. spacer 3.4|809853|35|NZ_HG813249|PILER-CR,CRT matches to NZ_HG813249 position: 1735586-1735620, mismatch: 1

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaact	Protospacer
*******************.***************

3. spacer 3.8|809788|35|NZ_HG813249|CRISPRCasFinder matches to NZ_HG813249 position: 1735085-1735051, mismatch: 0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

4. spacer 3.9|809852|36|NZ_HG813249|CRISPRCasFinder matches to NZ_HG813249 position: 1735585-1735620, mismatch: 1

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

5. spacer 4.12|825932|36|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG813249 position: 1733355-1733390, mismatch: 0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

6. spacer 4.16|826189|34|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG813249 position: 1733964-1733997, mismatch: 0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

NZ_HG813249.1|WP_003733687.1|1845012_1845207_+|hypothetical-protein

1845012_1845207_+

64 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.43103448275862066	1.0

1841141-1879982

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_HG813249_4	Unclear	4.32\|827226\|37\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827226-827262	37	1850997-1851033	0

1. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG813249 position: 1850997-1851033, mismatch: 0

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgcgtgttcattatcggacatctta	Protospacer
*************************************

NZ_HG813249.1|WP_003733686.1|1845218_1845503_+|hypothetical-protein

1845218_1845503_+

94 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.43103448275862066	1.0

1841141-1879982

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_HG813249_4	Unclear	4.32\|827226\|37\|NZ_HG813249\|CRISPRCasFinder,CRT,PILER-CR	827226-827262	37	1850997-1851033	0

1. spacer 4.32|827226|37|NZ_HG813249|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG813249 position: 1850997-1851033, mismatch: 0

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgcgtgttcattatcggacatctta	Protospacer
*************************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_HG813250

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_HG813249

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information