CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_KK211192	Listeria monocytogenes Lm25180 P892DRAFT_scaffold00004.4, whole genome shotgun sequence	1 crisprs	csa3,WYL	0	0	1	0
NZ_JHZR01000002	Listeria monocytogenes Lm25180 P892DRAFT_scaffold00001.1_C, whole genome shotgun sequence	1 crisprs	WYL,casR,RT,cas3,DEDDh	3	8	2	2
NZ_JHZR01000009	Listeria monocytogenes Lm25180 P892DRAFT_scaffold00006.6_C, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_KK211191	Listeria monocytogenes Lm25180 P892DRAFT_scaffold00002.2, whole genome shotgun sequence	0 crisprs	DinG	0	0	1	1
NZ_JHZR01000012	Listeria monocytogenes Lm25180 P892DRAFT_scaffold00009.9_C, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JHZR01000005	Listeria monocytogenes Lm25180 P892DRAFT_scaffold00003.3_C, whole genome shotgun sequence	0 crisprs	DinG,csa3	0	0	0	0
NZ_JHZR01000008	Listeria monocytogenes Lm25180 P892DRAFT_scaffold00005.5_C, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_JHZR01000010	Listeria monocytogenes Lm25180 P892DRAFT_scaffold00007.7_C, whole genome shotgun sequence	1 crisprs	cas3	0	0	0	0
NZ_JHZR01000011	Listeria monocytogenes Lm25180 P892DRAFT_scaffold00008.8_C, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JHZR01000001	Listeria monocytogenes Lm25180 P892DRAFT_scaffold00010.10_C, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_KK211192_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_KK211192_1

52704-52860

Orphan

Consensus_repeat	Method
ATTTAGGTAAATTTTGAAAATCAGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_KK211192_1

>merge|NZ_KK211192|1|52704-52860|CRISPRCasFinder
ATTTAGGTAAATTTTGAAAATCAGGTGTATTGGTTAATAAATTTGCATTTAAATCTAAAAATACGAGATTTGGTAAATTTTGAAAATCAGGAATAGTTGTCAATTGGTTAGAACTTAGATCTAACGTAATAAGTAAAGGAATATTATTAAAATTAGG

>NZ_KK211192|1|1|52704-52860|CRISPRCasFinder
ATTTAGGTAAATTTTGAAAATCAGG	TGTATTGGTTAATAAATTTGCATTTAAATCTAAAAATACGA
GATTTGGTAAATTTTGAAAATCAGG	AATAGTTGTCAATTGGTTAGAACTTAGATCTAACGTAATAA
GTAAAGGAATATTATTAAAATTAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_KK211192.1\|WP_003722604.1\|50196_51168_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|224398
NZ_KK211192.1\|WP_012952013.1\|57523_57859_-\|membrane-protein	unknown	unknown	gnl\|CDD\|226719
NZ_KK211192.1\|WP_009930394.1\|58085_58484_+\|hypothetical-protein	unknown	unknown	unknown
NZ_KK211192.1\|WP_003732487.1\|62513_63857_+\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|274109
NZ_KK211192.1\|WP_014930223.1\|59187_61350_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
NZ_KK211192.1\|WP_003722610.1\|43324_44284_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_KK211192.1\|WP_003722600.1\|55086_55683_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_KK211192.1\|WP_003732488.1\|61428_62355_+\|dipeptidase	unknown	unknown	gnl\|CDD\|366534
NZ_KK211192.1\|WP_003732486.1\|64298_65345_+\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
NZ_KK211192.1\|WP_009924991.1\|41187_41685_+\|acyltransferase	unknown	unknown	gnl\|CDD\|100053
NZ_KK211192.1\|WP_003722596.1\|58500_59109_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_KK211192.1\|WP_026750231.1\|44402_45386_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|224012
NZ_KK211192.1\|WP_003732497.1\|41770_43246_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NZ_KK211192.1\|WP_014601134.1\|55839_57276_+\|polysaccharide-monooxygenase	unknown	unknown	gnl\|CDD\|225932
NZ_KK211192.1\|WP_010990001.1\|48343_49219_+\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NZ_KK211192.1\|WP_026750233.1\|46505_48236_+\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_KK211192.1\|WP_003732491.1\|53647_55039_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_KK211192.1\|WP_003722605.1\|49220_50189_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
NZ_KK211192.1\|WP_026750232.1\|45402_46464_+\|galactose-mutarotase	unknown	unknown	gnl\|CDD\|185696
NZ_KK211192.1\|WP_009924964.1\|51194_52211_+\|NADPH-dehydrogenase-NamA	unknown	unknown	gnl\|CDD\|184110

Protein	Function_ID	Function_description	E-value
NZ_KK211192.1\|WP_003722604.1\|50196_51168_+\|DNA-binding-protein-WhiA	gnl\|CDD\|224398	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown].	7.47224e-145
NZ_KK211192.1\|WP_012952013.1\|57523_57859_-\|membrane-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	6.49883e-05
NZ_KK211192.1\|WP_003732487.1\|62513_63857_+\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|274109	TIGR02395, RNA_polymerase_sigma-54_factor, RNA polymerase sigma-54 factor. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., ). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations [Transcription, Transcription factors].	0
NZ_KK211192.1\|WP_014930223.1\|59187_61350_+\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	3.35828e-131
NZ_KK211192.1\|WP_003722610.1\|43324_44284_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	3.0648e-149
NZ_KK211192.1\|WP_003722600.1\|55086_55683_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	2.30261e-143
NZ_KK211192.1\|WP_003732488.1\|61428_62355_+\|dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	7.63415e-121
NZ_KK211192.1\|WP_003732486.1\|64298_65345_+\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	4.30628e-92
NZ_KK211192.1\|WP_009924991.1\|41187_41685_+\|acyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	3.97111e-27
NZ_KK211192.1\|WP_003722596.1\|58500_59109_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.34543e-18
NZ_KK211192.1\|WP_026750231.1\|44402_45386_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|224012	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane].	0
NZ_KK211192.1\|WP_003732497.1\|41770_43246_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.86989e-10
NZ_KK211192.1\|WP_014601134.1\|55839_57276_+\|polysaccharide-monooxygenase	gnl\|CDD\|225932	COG3397, COG3397, Uncharacterized protein conserved in bacteria [Function unknown].	1.27835e-101
NZ_KK211192.1\|WP_010990001.1\|48343_49219_+\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	3.87713e-175
NZ_KK211192.1\|WP_026750233.1\|46505_48236_+\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_KK211192.1\|WP_003732491.1\|53647_55039_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	7.80162e-139
NZ_KK211192.1\|WP_003722605.1\|49220_50189_+\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	1.06416e-165
NZ_KK211192.1\|WP_026750232.1\|45402_46464_+\|galactose-mutarotase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	6.29357e-148
NZ_KK211192.1\|WP_009924964.1\|51194_52211_+\|NADPH-dehydrogenase-NamA	gnl\|CDD\|184110	PRK13523, PRK13523, NADPH dehydrogenase NamA; Provisional.	0

>NZ_KK211192.1|WP_009924964.1|51194_52211_+|NADPH-dehydrogenase-NamA
MSKLFSEYKLKDVTLKNRIVMSPMCMYSVENKDGIATDFHFAHYVSRAAGGTGLVILEATAVQEVGRISEFDLGLWNDEQVPALKKLVDGLHYHGAKAGIQLAHAGRKAVLPGEIVAPSAIAFDEKSDKPVELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAVKEVWDGPIIVRVSATDYAHGGLQLEDHIPFAKWMKADGVELIDVSTGGLVNVAPPVFPGYQVPFADEIRRGAGIATGALGLITRGEQAEEILCNERADLIIVGRELLRNPYFAKDAAKQLGETIEAPKQYSRAWK
>NZ_KK211192.1|WP_003722604.1|50196_51168_+|DNA-binding-protein-WhiA
MSFASETKKELTHMDVSDSDAKVELAAFIRMNGAISFSSQLVIMDVQTENAAIARRMYQLLKDLYEVPIELLVRRKMKLKKNNVYIVRLKSGTRGILEDLRILEPPMTFTKSIDRGFVKKRSAKRAYLRGAFLASGSVNNPETSSYHLEIFSVYEEHNEAICALMNQFDLNARTLERKNGFITYLKEAEKITEFLSIIGATSALLHFEDVRIMRDMRNSVNRLVNCETANLNKTINAAVRQIDNIKYIQSTVGLEALPERLREIAALRIANEDVTLKELGEMLTTGQVSKSGINHRLRKLDQIAERLRSGETPAQVGLKISNS
>NZ_KK211192.1|WP_003722605.1|49220_50189_+|YvcK-family-protein
MKKETKPRVVVIGGGTGLPVILKGLKKKDIHLTAIVTVADDGGSSGKIREQMDVLPPGDIRNVMLALSNVDPRVVDLFQYRFAVDGDLSGHVIGNLILTALSQLNDSYVDAINVLATVLKIRGKVIPATDQPLILNAEMEDGSIVHGESLIPLQGKHINRVYIEPENVKPYPTAVEAVKEADLIVIGPGSLYTSILPNLLLTELADEITASKAPKVYITNILTQIGETDFFSDADHIKVIHEHVGKSFIDKTLINTTTVPKELLFPEDVAQVEHNAKGMEELGVEAIYQDFLSTEDGLVRHAAEKVADALLAMLPNQTNEKE
>NZ_KK211192.1|WP_010990001.1|48343_49219_+|RNase-adapter-RapZ
MASKQLKLVIITGMSGAGKTVAMQSLEDLGYFCVDNLPPSLLPKFWELMKESDKMDKIALVMDLRGREFFDSIEPALDELDNTNFITTKILFLEADDKVLVSRYKETRRHHPLEPNGSVLDGINAERELLSDLKGRSQLVINTSNMAPRELRERINNEFQTEDKDIFNVQLMSFGFKYGIPIDADLVFDVRFLPNPHYIDKMRPLTGLDEDVYEYVMKWPETQTFLDKLVDLLMFTLPFYKREGKTQLVIAIGCTGGQHRSVALTEFVGKTIQQKYETTISHRDMKRRKGR
>NZ_KK211192.1|WP_026750233.1|46505_48236_+|phospho-sugar-mutase
MNWQEEYQKWVANDKLDSTLRKQLTNMETNEKELEDSFYRNMEFGTAGMRGVLGAGTNRMNIYTIRKASLGLAQFVAENGEEAKKRGIVIAYDPRHMSREFAFESAAVLGHHGVKSYVFDALRPTPELSFAVRHLNAFGGIVITASHNPPEYNGYKIYGEDGGQMPPTGASAVIEYINAVEDIFSVEVANQELLIENGLLEVISEKVDRPYLEKLKEVIVNKELVQERGEDLKIVFTPLHGTGGILGVPALESVGFTSIVKVDEQFVNDPDFGTVKSPNPENREAFLLAIEYGKKFGGDILVGTDPDADRLGVAVRNADGEYEVLSGNQIGAIILHYLLKQKKAQNELPANAAVLKSIVTSNLGTEIAKHYGAEMIEVLTGFKFIAEQIKHFEETGKHTFEFGYEESNGYMVKPFTRDKDAIQAVLAIAEVALVSKVEGGSLLEDLEQIYADFGYYKEDLVSLTLSGKDGSRRIKEITSSFREQLPTSMGGFPVERAEDYLRSETTWIATGKTEAIHLPTADVIKCYFEDGSWFCLRPSGTEPKIKFYFSIRGENKEESTAKLEKVKADLMQHIEA
>NZ_KK211192.1|WP_026750232.1|45402_46464_+|galactose-mutarotase
MIFIEVMKERFGEFEGETVWKWTMINDHDMRMSVLNYGAIVTSLETKDKFGDFANISLGFTNLDDYLAHSPYFGATLGPVAGRITNGQFSLDGKQFQLIQNEGSNHRHGGKFNFSKKLWDVSVEKSLDQIVMTFEYCWADGENGYPGKIDAKMTYTLNNKNEWLIDYEARSNQPTIYNPSNHIYFNLSGEVGSTVLQHQLWVNSDSFLPIDEEFLPIGEKRLAENTIFDLRAGREVAEITQSQDQQVKLVGAGLDHTFILKHENGRPDAVLFDPKSGRRLEMETKADSVLIYTANSLDGSFEIDERAVPKYAGITMETQGLVDAINHDGFGDIVLRPEKPFTSRTAFRFTVES
>NZ_KK211192.1|WP_026750231.1|44402_45386_+|UDP-glucose-4-epimerase-GalE
MGIAVLGGAGYIGSHAVDELITRGYEVVVIDNLRTGHRESIHKKAKFYEGDIRDKAFLSSVFEKEKVDGVIHFAASSLVGESMEVPLDYLNNNVYGTQIVLEVMEEFDVKHIVFSSSAATYGEPERVPITEDMPTNPESTYGETKLIMEKMMKWCDKAYGMKFVALRYFNVAGAKADGSIGEDHKPESHLVPIILQVALGQREKLAIYGDDYNTPDGTCIRDYVQVEDLIDAHIRALEYLKNGGESNIFNLGSSNGFSVKEMLEAARTVTGKEIPADVVPRRAGDPGTLIASSDKAREILGWEPTYTDVKDIIATAWKWHVSHPNGY
>NZ_KK211192.1|WP_003722610.1|43324_44284_+|thioredoxin-disulfide-reductase
MASEEKIYDVIIIGAGPAGMTAALYTSRADLDTLMIERGVPGGQMVNTAEVENYPGFDSILGPDLSDKMLSGAKQFGAEYAYGDIKEVVDGKEFKTVTAGSKTYKARAIIIATGAEHRKLGAAGEEELSGRGVSYCAVCDGAFFKNRELIVVGGGDSAVEEGTYLTRYADKVTIVHRRDKLRAQQILQDRAFKDEKVDFIWNSTVEEIVGDGKKVTGAKLVSTVDGSESIMPVDGVFIYVGLVPLTKAFLNLGITDDEGYIVTDEEMRTNLPGIFAAGDVRAKSLRQIVTATGDGGLAGQNAQKYVEELKESLEAEAAK
>NZ_KK211192.1|WP_003732497.1|41770_43246_+|hypothetical-protein
MEKDKKTPAKIYPFYPNGQFYFERGVEAFRDQRIKEAIRYLVRASELEPGEAVILCQLAICYTEIGQFHKSNQLLREVLEQRNGNMEYCYYFIANNFAYMKDYRRALQYANRYLDSSTDGEYTEEAKDLIEVLLEETPFGETIENGFSKLEQEFYSYKKEINRYLAEEDSASACDILRKVIDEKPNFWPAYNQLASLYFEQLKEEEGVRVLSDLLSRNPGNLLGICDLFIYHFYKGNRKEADELYLELRDVLPVLAHHKEKLGLIHAMMGEYEEADDLLEQVADLEVTERSKYYYFRAKSSYYLGDVEGAKMFWHSFLECDLYEDVRFPWEQEPDLTNDTRLVLEMLQEEDDLTHMLGVYALTISGNRPELVLFHPLLDMSDWSYMEHLMFTNFDYFPDGAIEQNGYLIAKAMIILKENGILLNEEYMALYKQMFSLVLIDAGKDLILGRYTIETVASAIAKLFLPHLKLQLVEEFECSKCARDIERVLSR
>NZ_KK211192.1|WP_009924991.1|41187_41685_+|acyltransferase
MRRLDRFNAPDDTVNTLFQVYKTISFWKVLKNTLVIEFGRFFPWMGGKRKIYRVCLGMEIGEKTAIAYKVMPDLFFPEKILIGENSIIGYHTTILTHEYLLSEYRVGEVVIGRDVMVGANVTILPGIVIGDGAVIAAGAVVSVDVPAGSFAYGNPLIIKEKATLT
>NZ_KK211192.1|WP_003732491.1|53647_55039_+|amino-acid-permease
MTKVNSFFRKKSFHNPATDKHHLNKSLGAFDLTMLGVGAVVGGGIFILPGQVASVIAGPGIIISFIIAGIACCLAALCYSEFASKLPVAGSAYTYSYHVFGEGVAWILGWSLILEYGLAVAAIASGWSSYMKSLLAGFDLHIPTAISSAYDPSAGTYFDLLAFVVVMVIGILLSFGIRESTRVNNIMVLVKIAVVVLFILVGAFYVKPDNWTPFLPFGVQGVITGASTVFFAYIGFDAVSSAAEEVKNPQKNMPIGIISSLAVCTLLYILLSAVLTGVVPYTDLVDVSAPVAFALQAINQNWIAGLLSVGAIVGMTTVVLVMSYGGTRLLFAMGRDGLLPKSFSKISKNDTPVRNTMIFATVMGLIASTVPMADLAQLINIGTLFAFAMVSIGIFFLRRNPDLNQKGFKTPFYPVVPALSFLLCVYLMINLSKTTWIAFGIWFVIGILVYTFYGRKHSALRIK
>NZ_KK211192.1|WP_003722600.1|55086_55683_-|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDIIINKSGLKG
>NZ_KK211192.1|WP_014601134.1|55839_57276_+|polysaccharide-monooxygenase
MKKMTKIGMFFAVFTLAVVLFQTTASAHGYISKPASRVYLANKGINVGVGSAQYEPQSVEAPKGFPISGPADGSIAGGGKYSLLDEQSASRWAKVDIESGPLTVEWTLTAPHKTSSWQYFITKKGWDPNKPLTRSSLEPLATIEADGSVPNALAKQEINIPNDRSGYYLILGVWNIADTGNAFYQVIDANIINSDITPVADTEEPTKPTNLAATTTTKTVSLAWNASTDNVGIKGYEILRDGVVIGESQTASYEDTTVESNTAYTYTVRAKDFAGNKSTLSNSINVTTKEVPAVDNEAPTAPKSLMSHGQTDTTIALCWQASTDNVEVKNYEIYRNNTKIATSTKTMFEDTKLASNTSYNYKVYAVDTSGNRSLVSNEITIKTKTLDPLNTWKSDQIYNAGDQVYYNGVAYTAKWWTKGNTPDTSDVWQTASTDIQTWNVQKAYNGGDKVTYNGKTYQAKWWVRGEKPDSSSIWTLLN
>NZ_KK211192.1|WP_012952013.1|57523_57859_-|membrane-protein
MVEQNYMETRNGRTSFFDGGLLQYIGWTILGTLVTLCTFGICYPWALCMVYGWKINHTVIEGRRLKFQGSAVSLFGHWVKWLLLTIITIGIYGFWVFIKLEDWKVKNTIFN
>NZ_KK211192.1|WP_009930394.1|58085_58484_+|hypothetical-protein
MAASLKDRLEEEVKTYSADNNLTVQTIDFLYAGPHMRGRHSLVLAFTEAGIFTFVFKLSDAEMHFLDGKTVQQIVLEKKKLVYRLYIRAVTEEGELEEGKYLVSKRVLGRKWHKETLEKLINKNLPLLTATK
>NZ_KK211192.1|WP_003722596.1|58500_59109_+|TetR/AcrR-family-transcriptional-regulator
MEKKRTRAEELGITRRKILDTARDLFMEKGYRAVSTREIAKIANITQPALYHHFEDKESLYIEVVRELTQNIQVEMHPIMQTNKAKEEQLHDMLIMLIEEHPTNILLMIHDILNEMKPENQFLLYKLWQKTYLEPFQQFFERLENAGELRNGISAETAARYCLSTISPLFSGKGSFAQKQTTTEQIDELINLMMFGICKKEV
>NZ_KK211192.1|WP_014930223.1|59187_61350_+|MMPL-family-transporter
MKDGFLSKIASGVGGKKGRFITLGIWIIAIIILQFFFPKAADYKDDAAKDLPNSEPSVVAQKLIDDKFAGTDGVPALITWYRSTGLTNEDLVNIQKYSKELTENPVDYQKMAVPYDKMPPVALKQQVSKDGTTFIQTVIMKDSATSDQLTESFKQLESAAKTTIGEDPFAQKVSADDTLVARTTGPAGISVDASGLFKDADVSLLIGTVLLVLVFLLVIYRSPILALIPLIAVGFAYLVITPILGLLAKEGIITYGSQGLSIMTVLLFGAGTDYCLFLISRFRSHLHTEKNRFQAFKEAFSGTAGAIALSGLTVMAALLLLLAAEYGSFHNFAVPFSLAIFIMMISSLTLVPALLGIFGRVSFWPFVPRTVEMEETRAKKKGKTPKHHKENRFWHKIGEMSAKHPVRILIITLIILIGCGIFTTQVKYTYDTLSTFPEDMPSREGFTLISDHFGAGMLAPMEVVVNSKESMKSSLENVNGVASVTGPERSKGYQKYTLILKDNPYSNEAMDVVPKVRAAADKGNDVYIAGQTATQYDDRAVTEHDEKVIIPLVIALIAILLLCYLRSITAMLYLVATVLLSFVGALGLGWVIIHYAMGVEAISGLIPLYAFVFIVALGEDYNIFMISSIWKNSKKMPLRKAITEGVGQTGGVITSAGLILAGTFGVLTTLPIQLLVQFGLITAIGVLLDTFIVRPFLVPSITVLLGKWAFWPGKQHKMTK
>NZ_KK211192.1|WP_003732488.1|61428_62355_+|dipeptidase
MRVIDTHCDALYKLQAGKGKYTFQDAEELDVNFERLIEAKMLLQGFAIFLDEDIPVEHKWKKAVEQVNIFKQHVLHKGGIIHHVKKWCDLENLPEDKIGAMLTLEGIEPIGRDLDKLTQLLDGGVLSVGLTWNNANLAADGIMEERGAGLTRFGKDIIHLLNERKVFTDVSHLSVKAFWETLEQAEFVIASHSSAKAICAHPRNLDDEQIKAMIEHDAMIHVIFHPLFTTNDGVADIEDVIRHIDHICELGGMKNIGFGSDFDGIPDHVKGLEHAGKYQNFLETLGKHYTKEEVEGFASRNFLNHLPK
>NZ_KK211192.1|WP_003732487.1|62513_63857_+|RNA-polymerase-factor-sigma-54
MRLESNFVQKQQQKQSQKLNMTQQLSQSIAMLQFATADLVAFLEDKALENPLIEVIPGSDFATDFSYSSRKSAGSSDDTDWLEQIADNKMTLADALKEQLHLMDVTQTQKIIVLYLIESLNDNGYLQIDLKDVSAALLMDDSSVLEGLEILQSMEPAGVGARDARECILLQIERSPDAPYIAYDVIQKFFTEFAEKKWKKIASEMDVSLQDIQEVSDYIQTLNPKPGSEFESERVQYVVPDLILLQHEDEFAVSLAKQFLPQVRFQEAYYETMRATEEKDVAQFLREKAGEFDWIKKGIEQRESTLQRVGEAIVSHQKAYFLDNSAHLQPLTLKEVAEELGVHESTVSRAVNGKYMETTNGVYELKRFFASGLQKKSSENENIGDISSTTIKKLVQEFVAAEDKLKPLSDQKIVDMLAEKEIQVSRRAIAKYRLELNIPSSSKRKRF
>NZ_KK211192.1|WP_003732486.1|64298_65345_+|sugar-binding-transcriptional-regulator
MSDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGMLGMSERVLRGEVEFLKAQGLVEIASSGMTVTKEGLVVFRDLESVMNQLSGLHSMEEQLAKKLQIKKCLVVQGDSDDTPWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEMMTTDFAKGRELLFVPGRGGIGEDLDNQANTICDKMATKTNTKHRVLYVPEQLGEEAYRSLLKEPAIQEGLRLVQSANAIILGIGDALAMAKRRHTGEDVLEKIIHRKAVGEAFGYYFDEQGEVVHKVPTFGLQFEDLAQIPHIIAVAGGTSKAKAIKSYMKSAPKNTILITDEGAAKSLLKGSNTLLK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

43324 : 51168

Streptococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722610.1\|43324_44284_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7
WP_026750231.1\|44402_45386_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.1e-52	38.4
WP_026750232.1\|45402_46464_+	galactose mutarotase	NA	NA	NA	NA
WP_026750233.1\|46505_48236_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.9e-174	53.5
WP_010990001.1\|48343_49219_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	3.2e-08	29.7
WP_003722605.1\|49220_50189_+	YvcK family protein	A1IMD5	Streptococcus_phage	6.7e-68	43.3
WP_003722604.1\|50196_51168_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_KK211191

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

509327 : 549328

Listeria_phage(94.83%)

tail,terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026750194.1\|509327_509561_-	hypothetical protein	A0A059T6E1	Listeria_phage	6.8e-35	94.8
WP_009924649.1\|509860_510094_+	hypothetical protein	A8ATW9	Listeria_phage	9.2e-08	48.1
WP_003731276.1\|510125_510377_+	hypothetical protein	A8ATW8	Listeria_phage	2.0e-40	100.0
WP_003722518.1\|510377_510827_+	anti-CRISPR protein AcrIIA1	A8ATW7	Listeria_phage	2.4e-76	100.0
WP_003733661.1\|510851_511349_+	AP2 domain-containing protein	A8ATW6	Listeria_phage	3.8e-91	100.0
WP_003722520.1\|511623_512397_+	DUF3825 domain-containing protein	A8ATW5	Listeria_phage	9.5e-150	100.0
WP_003733663.1\|512437_513283_-	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	2.7e-137	94.7
WP_003722522.1\|513282_513564_-\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
WP_003722523.1\|513576_513942_-	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
WP_026750195.1\|513980_516146_-\|tail	phage tail protein	A8ATW1	Listeria_phage	0.0e+00	92.8
WP_003733727.1\|516158_517727_-\|tail	phage tail family protein	A8ATW0	Listeria_phage	3.1e-304	99.2
WP_026750196.1\|517723_522523_-\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	89.2
WP_077914498.1\|522527_522839_-	hypothetical protein	A0A0B5D116	Listeria_phage	4.5e-42	97.8
WP_026750198.1\|522835_523267_-	hypothetical protein	A8ATV7	Listeria_phage	4.7e-74	99.3
WP_012951935.1\|523322_524009_-	Ig domain-containing protein	A0A0B5CYK8	Listeria_phage	2.6e-114	97.4
WP_003725064.1\|524013_524385_-	hypothetical protein	A8ATV5	Listeria_phage	8.5e-64	100.0
WP_012951936.1\|524381_524699_-	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	2.4e-51	98.1
WP_026750199.1\|524688_525054_-	hypothetical protein	A8ATV3	Listeria_phage	2.1e-62	95.0
WP_003723785.1\|525053_525407_-	hypothetical protein	A8ATV2	Listeria_phage	8.4e-61	99.1
WP_176936674.1\|525407_525575_-	hypothetical protein	A8ATV1	Listeria_phage	1.7e-11	100.0
WP_026750200.1\|525594_526467_-	hypothetical protein	A8ATV0	Listeria_phage	7.9e-161	99.0
WP_003744996.1\|526489_527044_-	hypothetical protein	A8ATU9	Listeria_phage	1.1e-88	99.5
WP_003753503.1\|527139_528183_-	hypothetical protein	A0A0B5D111	Listeria_phage	5.1e-199	98.8
WP_026750201.1\|528187_529744_-	hypothetical protein	A8ATU7	Listeria_phage	2.9e-299	98.8
WP_026750202.1\|529758_531078_-\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	8.1e-234	88.5
WP_026750203.1\|531016_531802_-	hypothetical protein	A8ATU5	Listeria_phage	5.0e-130	97.1
WP_023548498.1\|531841_532069_-	hypothetical protein	A0A0B5CTV3	Listeria_phage	1.6e-33	97.3
WP_026750204.1\|532352_532787_-	hypothetical protein	A8ASQ1	Listeria_phage	5.3e-73	97.2
WP_026750205.1\|532927_533311_-	DUF2481 family protein	A0A0B5CU14	Listeria_phage	4.4e-63	96.9
WP_026750206.1\|533314_533719_-	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	1.5e-61	89.6
WP_031669838.1\|533663_533846_-	hypothetical protein	A8ASP6	Listeria_phage	3.2e-16	77.8
WP_026750207.1\|533864_534347_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	1.0e-80	98.1
WP_026750208.1\|534343_534745_-	hypothetical protein	A8ATZ6	Listeria_phage	4.9e-49	76.7
WP_026750209.1\|534741_535101_-	hypothetical protein	A0A059T801	Listeria_phage	3.8e-45	92.0
WP_026750210.1\|535122_535383_-	DUF3850 domain-containing protein	A0A059T699	Listeria_phage	1.1e-25	77.0
WP_026750211.1\|535375_535711_-	hypothetical protein	A8ATZ5	Listeria_phage	4.6e-08	93.1
WP_026750212.1\|535927_536116_-	hypothetical protein	NA	NA	NA	NA
WP_026750213.1\|536112_536670_-	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	3.1e-41	49.8
WP_026750214.1\|536666_537044_-	hypothetical protein	NA	NA	NA	NA
WP_026750215.1\|537040_538024_-	DNA cytosine methyltransferase	H7BVD3	unidentified_phage	1.2e-48	38.1
WP_026750216.1\|538023_538488_-	class I SAM-dependent methyltransferase	A8ATY8	Listeria_phage	9.6e-89	100.0
WP_026750217.1\|538484_539459_-	phage replisome organizer N-terminal domain-containing protein	A8ASN4	Listeria_phage	4.1e-166	92.9
WP_026750218.1\|539475_540135_-	ERF family protein	A8ASN3	Listeria_phage	5.0e-91	91.3
WP_012951957.1\|540140_540617_-	siphovirus Gp157 family protein	A0A059T5F1	Listeria_phage	9.5e-76	100.0
WP_003734953.1\|540613_540808_-	hypothetical protein	A0A059T6E8	Listeria_phage	1.6e-29	100.0
WP_003722564.1\|541113_541302_-	hypothetical protein	Q9T175	Listeria_phage	1.8e-22	82.3
WP_023548459.1\|541410_541626_-	hypothetical protein	Q9T176	Listeria_phage	9.7e-28	93.0
WP_012951959.1\|541622_542156_-	hypothetical protein	A0A059T5F0	Listeria_phage	1.5e-77	87.9
WP_026750219.1\|542281_543061_-	phage antirepressor KilAC domain-containing protein	A0A0B5CTU1	Listeria_phage	6.9e-140	97.7
WP_003733684.1\|543124_543322_+	hypothetical protein	Q9T179	Listeria_phage	4.0e-20	96.0
WP_012951961.1\|543323_543605_-	hypothetical protein	A8ATX8	Listeria_phage	3.6e-38	96.7
WP_026750220.1\|543601_543838_-	hypothetical protein	A0A059T5E9	Listeria_phage	9.6e-37	98.7
WP_026750221.1\|543902_544262_+	DUF2513 domain-containing protein	A0A2H4J4K9	uncultured_Caudovirales_phage	4.6e-06	26.3
WP_003733687.1\|544220_544415_-	hypothetical protein	A0A059T6E5	Listeria_phage	1.4e-25	95.3
WP_026750222.1\|544479_544746_+	hypothetical protein	NA	NA	NA	NA
WP_023548448.1\|544768_544942_-	hypothetical protein	NA	NA	NA	NA
WP_003731220.1\|544945_545197_-	helix-turn-helix transcriptional regulator	A8ATX6	Listeria_phage	7.6e-40	100.0
WP_026750223.1\|545345_545654_+	helix-turn-helix transcriptional regulator	A8ATX5	Listeria_phage	2.7e-47	99.0
WP_012951966.1\|545684_546176_+	hypothetical protein	A8ATX4	Listeria_phage	2.9e-91	99.4
WP_003727739.1\|546198_546417_+	zinc-ribbon domain-containing protein	A0A059T6E3	Listeria_phage	5.4e-34	100.0
WP_023548440.1\|546431_547037_+	hypothetical protein	NA	NA	NA	NA
WP_026750224.1\|547100_548459_+	recombinase family protein	Q8LTD8	Listeria_phage	2.1e-256	99.1
WP_026750225.1\|548449_548926_+	competence protein ComK	NA	NA	NA	NA
WP_003739618.1\|548980_549328_-	helix-turn-helix transcriptional regulator	A0A0U4JD08	Gordonia_phage	2.0e-06	42.6

Anti-CRISPR protein detection

Acr_ID: NZ_KK211191.1|WP_003731276.1|510125_510377_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_KK211191.1|WP_003731276.1|510125_510377_+|hypothetical-protein

510125_510377_+

83 aa aa

AcrIIA12

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3641\|WP_003731276.1\|AcrIIA12\|II-A\|Verified\|Listeria-monocytogenes	1.0	1	1.0

509327-549328

3. NZ_JHZR01000010

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_JHZR01000010_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JHZR01000010_1

27106-27257

Unclear

Consensus_repeat	Method
GAGCTCGGTTCCGATGTAGCAGGAGCATTAAAACCAAGAAGCATTGG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_JHZR01000010_1

>merge|NZ_JHZR01000010|1|27106-27257|CRISPRCasFinder
GAGCTCGGTTCCGATGTAGCAGGAGCATTAAAACCAAGAAGCATTGGCGTCTCTGGCAAAGCAAGTCTTAACTCTTCATCCGTAGGCGGTGGTGGAAATTCGAATGAGCTCGGTTCTGATGTAGCAGGAGCATTAAAACCAAGAAGCATTGG

>NZ_JHZR01000010|1|1|27106-27257|CRISPRCasFinder
GAGCTCGGTTCCGATGTAGCAGGAGCATTAAAACCAAGAAGCATTGG	CGTCTCTGGCAAAGCAAGTCTTAACTCTTCATCCGTAGGCGGTGGTGGAAATTCGAAT
GAGCTCGGTTCTGATGTAGCAGGAGCATTAAAACCAAGAAGCATTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_JHZR01000010.1\|WP_026750103.1\|20551_21136_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_JHZR01000010.1\|WP_003722740.1\|21225_21849_-\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	unknown	unknown	gnl\|CDD\|235534
NZ_JHZR01000010.1\|WP_003722724.1\|38160_39369_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528
NZ_JHZR01000010.1\|WP_026750106.1\|31992_32946_+\|phosphatidylinositol-specific-phospholipase-C	unknown	unknown	gnl\|CDD\|176497
NZ_JHZR01000010.1\|WP_003722725.1\|37167_37476_-\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NZ_JHZR01000010.1\|WP_009930499.1\|23160_23835_+\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|378033
NZ_JHZR01000010.1\|WP_003722729.1\|33216_33930_+\|listeriolysin-O-transcriptional-regulator-PrfA	unknown	unknown	gnl\|CDD\|223736
NZ_JHZR01000010.1\|WP_003722736.1\|24284_24746_-\|YehR-family-lipoprotein	unknown	unknown	gnl\|CDD\|227145
NZ_JHZR01000010.1\|WP_003722726.1\|36739_37048_-\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NZ_JHZR01000010.1\|WP_012952055.1\|28298_29831_-\|zinc-metalloproteinase-Mpl	unknown	unknown	gnl\|CDD\|225768
NZ_JHZR01000010.1\|WP_003722728.1\|33972_34929_-\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_JHZR01000010.1\|WP_003722723.1\|39365_40058_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_JHZR01000010.1\|WP_003722735.1\|24880_25204_-\|DUF5502-family-protein	unknown	unknown	gnl\|CDD\|340321
NZ_JHZR01000010.1\|WP_003722727.1\|34979_36353_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184643
NZ_JHZR01000010.1\|WP_003722743.1\|16230_19770_-\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NZ_JHZR01000010.1\|WP_003725735.1\|23901_24234_+\|putative-heavy-metal-binding-protein	unknown	unknown	gnl\|CDD\|179228
NZ_JHZR01000010.1\|WP_003733966.1\|25275_26145_-\|phosphatidylcholine-phospholipase-C	unknown	unknown	gnl\|CDD\|214813
NZ_JHZR01000010.1\|WP_026750105.1\|30161_31751_-\|cholesterol-dependent-cytolysin-listeriolysin-O	unknown	unknown	gnl\|CDD\|366559
NZ_JHZR01000010.1\|WP_003733151.1\|19884_20445_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_JHZR01000010.1\|WP_003722739.1\|22142_23084_+\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836

Protein	Function_ID	Function_description	E-value
NZ_JHZR01000010.1\|WP_026750103.1\|20551_21136_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	9.91275e-10
NZ_JHZR01000010.1\|WP_003722740.1\|21225_21849_-\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	2.38585e-63
NZ_JHZR01000010.1\|WP_003722724.1\|38160_39369_-\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	4.34799e-62
NZ_JHZR01000010.1\|WP_026750106.1\|31992_32946_+\|phosphatidylinositol-specific-phospholipase-C	gnl\|CDD\|176497	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated PI-analogues, PIP2 and PIP, to generate two important second messengers, InsP3 and DAG. InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. In contrast, bacterial PI-PLCs contain a single catalytic domain. Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. They participate in Ca2+-independent PI metabolism. They are characterized as phosphatidylinositol-specific phospholipase C (EC 4.6.1.13) that selectively hydrolyze PI, not PIP or PIP2. The TIM-barrel type catalytic domain in bacterial PI-PLCs is very similar to the one in eukaryotic PI-PLCs, in which the catalytic domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. The catalytic mechanism of both prokaryotic and eukaryotic PI-PLCs is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This superfamily also includes a distinctly different type of eukaryotic PLC, glycosylphosphatidylinositol-specific phospholipase C (GPI-PLC), an integral membrane protein characterized in the protozoan parasite Trypanosoma brucei. T. brucei GPI-PLC hydrolyzes the GPI-anchor on the variant specific glycoprotein (VSG), releasing dimyristyl glycerol (DMG), which may facilitate the evasion of the protozoan to the host#s immune system. It does not require Ca2+ for its activity and is more closely related to bacterial PI-PLCs, but not mammalian PI-PLCs.	1.36544e-113
NZ_JHZR01000010.1\|WP_003722725.1\|37167_37476_-\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	2.92652e-53
NZ_JHZR01000010.1\|WP_009930499.1\|23160_23835_+\|DNA-alkylation-repair-protein	gnl\|CDD\|378033	pfam08713, DNA_alkylation, DNA alkylation repair enzyme. Proteins in this family are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein in this family shows it to adopt a supercoiled alpha helical structure.	1.81561e-21
NZ_JHZR01000010.1\|WP_003722729.1\|33216_33930_+\|listeriolysin-O-transcriptional-regulator-PrfA	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	9.59942e-12
NZ_JHZR01000010.1\|WP_003722736.1\|24284_24746_-\|YehR-family-lipoprotein	gnl\|CDD\|227145	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown].	5.22035e-59
NZ_JHZR01000010.1\|WP_003722726.1\|36739_37048_-\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	5.03804e-54
NZ_JHZR01000010.1\|WP_012952055.1\|28298_29831_-\|zinc-metalloproteinase-Mpl	gnl\|CDD\|225768	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism].	9.42667e-139
NZ_JHZR01000010.1\|WP_003722728.1\|33972_34929_-\|ribose-phosphate-diphosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_JHZR01000010.1\|WP_003722723.1\|39365_40058_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	7.27113e-121
NZ_JHZR01000010.1\|WP_003722735.1\|24880_25204_-\|DUF5502-family-protein	gnl\|CDD\|340321	pfam17606, DUF5502, Family of unknown function (DUF5502). This is a family of unknown function found in Listeria.	5.76244e-49
NZ_JHZR01000010.1\|WP_003722727.1\|34979_36353_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184643	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NZ_JHZR01000010.1\|WP_003722743.1\|16230_19770_-\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_JHZR01000010.1\|WP_003725735.1\|23901_24234_+\|putative-heavy-metal-binding-protein	gnl\|CDD\|179228	PRK01119, PRK01119, putative heavy metal-binding protein.	8.98192e-61
NZ_JHZR01000010.1\|WP_003733966.1\|25275_26145_-\|phosphatidylcholine-phospholipase-C	gnl\|CDD\|214813	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.	6.00128e-87
NZ_JHZR01000010.1\|WP_026750105.1\|30161_31751_-\|cholesterol-dependent-cytolysin-listeriolysin-O	gnl\|CDD\|366559	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin.	1.81622e-178
NZ_JHZR01000010.1\|WP_003733151.1\|19884_20445_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	1.69718e-108
NZ_JHZR01000010.1\|WP_003722739.1\|22142_23084_+\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	0

>NZ_JHZR01000010.1|WP_003733966.1|25275_26145_-|phosphatidylcholine-phospholipase-C
MKFKKVVLGMCLTASVLVFPVTIKANACCDEYLQTPAAPHDIDSKLPHKLSWSADNPTNTDVNTHYWLFKQAEKILAKDVNHMRANLMNELKKFDKQIAQGIYDADHKNPYYDTSTFLSHFYNPDRDNTYLPGFANAKITGAKYFNQSVTDYREGKFDTAFYKLGLAIHYYTDISQPMHANNFTAISYPPGYHCAYENYVDTIKHNYQATEDMVAKRFCSDDVKDWLYENAKRAKADYPKIVNAKTKKSYLVGNSEWKKDTVEPTGARLRDSQQTLAGFLEFWSKKTNE
>NZ_JHZR01000010.1|WP_003722735.1|24880_25204_-|DUF5502-family-protein
MYIKGRLIFFFVMFVIALCSVLILLIIKISVWKDEPFHLSDAKEIECLGSCEIKNTNQKIHFFSIKENLFEEKGDIAGILNEDEQKVADKSIFIVILDDEKGIANEE
>NZ_JHZR01000010.1|WP_003722736.1|24284_24746_-|YehR-family-lipoprotein
MKMLKKGTAVLFVMIMAVMLVACGDKEETKTYTLSQNGVDSKLTYTYKGDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKAIETLEVDYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQGYKEVSK
>NZ_JHZR01000010.1|WP_003725735.1|23901_24234_+|putative-heavy-metal-binding-protein
MIVTTSPNIEGKQIIEYKKIVFGEVITGVNFMKDIGAGLRNFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDYEVLGADNGMLMVTASGTAVVIEAQDY
>NZ_JHZR01000010.1|WP_009930499.1|23160_23835_+|DNA-alkylation-repair-protein
MITFDQLDTELQALENPNTIKIFRNHGCPDSLDLYGLKIGDLKKIIRREKLTKNHELAVKLIESNNSDLIYLGLLAINPNKITTEQIEKWNIAFRETWSQLTFGLASIVSKRDDALLFAKTWIESDYDLTKSMGWQIYSEHINNLPEAETLLQRAKETLQTETNRTRYSMNGFIITCGIYKDDLHEKAMEAAKSVGKVHVNLGNTACKVPDAISYIEKARNRTK
>NZ_JHZR01000010.1|WP_003722739.1|22142_23084_+|L-lactate-dehydrogenase
MKDHQKIILVGDGAVGSSYAFACVNLSIGQEFGIIDIDKDRTIGDAMDLSHAVPFSTPKKIYSANYSDCHDADLVVVTAGTAQKPGETRLDLVNRNIKIMKGIVDEVMASGFDGIFLIASNPVDILTYATWKFSGLPKERVIGSGTSLDTARFRMSIADYLKVDARNVHGYILGEHGDTEFPAWSHTTVGGLPITEWISEDEQGAMDTIFVSVRDAAYEIINKKGATFYGVAAALARITKAILNNENAILPLSVYLDGHYGMNDIYIGAPAVVNRQGVRHIVEMNLNDKEKEQMKNSADTLKKVLDDAMKQID
>NZ_JHZR01000010.1|WP_003722740.1|21225_21849_-|50S-ribosomal-protein-L25/general-stress-protein-Ctc
MATTLEVQKRETTQHSEVTRLRSEGKVPGIIYGYKSENVPVSVDSLELIKAVRDNGRNAVFSVTVDGKKLNVLLHEYQVDPLKDVLVHVDLLAVDMNEEVETDVRVVLVGDAPGVKAGGVLQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLPENKDYVVQAEEEETVVTVSAPRAEEEPTTTEAPEPEAVHGKDEEPVE
>NZ_JHZR01000010.1|WP_026750103.1|20551_21136_-|GNAT-family-N-acetyltransferase
MLDKSVPHISVIMVNHDATNYPEFHLPAGYFFCFYKDGLEEDWCRLQLETGQVLSMDSIRARFETEFGNEKEKLTKRCIFVKAPNGEIIGTAMLWDGNTFGKIESRIHWVAVLDSHGGKGIAKALLSKILGLNKSKFVYLTTQTGSYQAIYLYRKFGFEKYVGKTPENWKTVNFQEEKETAWQIIENKIAEHQA
>NZ_JHZR01000010.1|WP_003733151.1|19884_20445_-|aminoacyl-tRNA-hydrolase
MKLIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKSKFNGMTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNISIEDVVIVYDDLDLPVGKIRLRQKGSAGGHNGMKSIIQHVKTQEFNRIRVGVSRPLKGEVINYVLGDFPKAEQPDIIAAIQKSADAIEDFAQTPFIEVMNKYNQK
>NZ_JHZR01000010.1|WP_003722743.1|16230_19770_-|transcription-repair-coupling-factor
MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGIIDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIVKRLEKKMMLTLNELKEQEDKQALIENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDYLPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLEGNHSPKIYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKIKKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGEDKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREFEEAFPYQETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVPVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGTQLKITINVQNKPLKEWLYQVKSLAEKLRGAMKEKASTEN
>NZ_JHZR01000010.1|WP_012952055.1|28298_29831_-|zinc-metalloproteinase-Mpl
MKSKLICIIMVIAFQAHFTMTVKADSVGEEKLQNNTQAKKTPADLKALPDSCEAKDFYKNFKILDMTKDKLGVTHYTLALSSGGYLTDNDEIKVHVTPDNKITFINGDLQQGQLRITNQIKITEKNAIEKAFEAIGQSEAHVKSYVGNPVKEKEIILNSRTKRLVYNIKLIFAEPEVASWIVQVDVETGAILKKQNMLSEVERADTHKDFQALGKGANRLLQRPLHVMKINDLFYLVDRTHKGLIRTFDLKHNTDTSFGKVVSNKTNMFTDPEFSSAVDAHFYASEVYEYYKNVHQLESLDGKGGEIDSFVHYGLNCNNAFWDGQEILYGDGDKKNFKPFSCAKTIVGHELTHAVIQYSAGLEYEGQSGALNESFADVFGYFIAPNHWLIGEDVCVRGSRDGRIRSIKDPDKYNQAAHMKDYESLPITEEGDWGGVHYNSGIPNKAAYNTITKLGKEKTEQLYFRALKYYLTKKSQFTDAKKALQQAAKDLYGEDASKKVAEAWEAVGVN
>NZ_JHZR01000010.1|WP_026750105.1|30161_31751_-|cholesterol-dependent-cytolysin-listeriolysin-O
MKKIMLVFITLILVSLPIAQQTEAKDASAFNKENSISSMAPPASPPASPKTPIEKKHADEIDKYIQGLDYNKNNVLVYHGDAVTNVPPRKGYKDGNEYIVVEKKKKSINQNNADIQVVNAISSLTYPGALVKANSELVENQPDVLPVKRDSLTLSIDLPGMTNQDNKIVVKNATKSNVNNAVNTLVERWNEKYAQAYPNVSAKIDYDDEMAYSESQLIAKFGTAFKAVNNSLNVNFGAISEGKMQEEVISFKQIYYNVNVNEPTRPSRFFGKAVTKEQLQALGVNAENPPAYISSVAYGRQVYLKLSTNSHSTKVKAAFDAAVSGKSVSGDVELTNIIKNSSFKAVIYGGSAKDEVQIIDGNLGDLRDILKKGATFNRETPGVPIAYTTNFLKDNELAVIKNNSEYIETTSKAYTDGKINIDHSGGYVAQFNVSWDEVNYDPEGNEIVQHKNWSENNKSKLAHFTSSIYLPGNARNINVYAKECTGLAWEWWRTVIDDRNLPLVKNRNISIWGTTLYPKYSNKVDNPIE
>NZ_JHZR01000010.1|WP_026750106.1|31992_32946_+|phosphatidylinositol-specific-phospholipase-C
MYKNYLQRTLVLLLCFVLYFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDMTWTLTKPLAQTQTMSLYQQLEAGIRYIDIRAKDNLKIYHGPIYLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSRKFGMQFGAPNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN
>NZ_JHZR01000010.1|WP_003722729.1|33216_33930_+|listeriolysin-O-transcriptional-regulator-PrfA
MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
>NZ_JHZR01000010.1|WP_003722728.1|33972_34929_-|ribose-phosphate-diphosphokinase
MSNEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNPVNQNLMELLIMIDALKRASAATINIVMPYYGYARQDRKARSREPITAKLVANLIETAGATRMITLDMHAPQIQGFFDIPIDHLNAVRLLSDYFSERHLGDDLVVVSPDHGGVTRARKMADRLKAPIAIIDKRRPRPNVAEVMNIVGNVEGKVCIIIDDIIDTAGTITLAAKALREAGATKVYACCSHPVLSGPAMKRIEESPIEKLVVTNSIALPEEKWIDKMEQLSVAALLGEAIVRVHENASVSSLFE
>NZ_JHZR01000010.1|WP_003722727.1|34979_36353_-|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MSKRYAVVLAAGQGTRMKSKLYKVLHPVCGKPMVEHVVDQISTLNVDKVVTIVGHGAEKVQEHLAGKSEFVKQDEQLGTAHAVLQAKAELAGKDGVTLVVCGDTPLIEASTMEALLKYHHEKRAKATILTTVIEDPTGYGRIIRDDLGIVEKIVEHKDATEKEQRISEINTGTYCFDNKALFEALENVSNDNVQGEYYLPDVIKILKDSDEVVAAYRMESFEESLGVNDRIALAEASKLMQRRINENHMRNGVTLVNPESTYIDIDVKIGQDTVIEPGVMLRGKTVIGDDCVVTSGSEIVNSVIGERVHVRTSSIFESKVGDDVQIGPYAHLRPESDIHDHVKIGNYVETKKAVVGEGTKLPHFIYMGDAEIGKNVNVGCGSIAVNYDGKNKAKTIIGDNVFVGCNSNLIAPVKVGDRAFIAAGSTITKDVPEDALGIARAKQDNKLGYAKHLNHGK
>NZ_JHZR01000010.1|WP_003722726.1|36739_37048_-|septation-regulator-SpoVG
MQVTDVRLRRVETDGRMRAIASITLDEEFVVHDIRVIDGNNGLFVAMPSKRGVDGEFRDIAHPINSDTRAKIQEVVLAEYERVGEEEATAVTEEESESVSAE
>NZ_JHZR01000010.1|WP_003722725.1|37167_37476_-|septation-regulator-SpoVG
MEITDVRLRRVETDGRMKAISSITIDGEFVIHDIRVIDGNEGLFVAMPSKRTPDGEFRDIAHPINSGTRAKIQEAVLAAYEVADEPAVNEESSADESIVEEN
>NZ_JHZR01000010.1|WP_003722724.1|38160_39369_-|ABC-transporter-permease
MNVLQSMKMAWKQLKASKLRSFLTMLGIIIGVASVILLVSLGNGVTQEVDDQMGDLGSNLITVVNSSVNPNDKYTYDEVMKYQNIDGVKSVSPELSGQVNATFDYKSSSNKVIGTNDQYKAARSLEMKEGRFLLPIDTEYGQKVAVIGSTVASDLFGFGDPIGETIRLNGMPYKVVGVLKEKGASMMGSSDDQIFIPISSAQRLLKDTNVRTIYVETKSAEDVDFVVNTLESRLAIKFGDEKEQEKNASSAQMGPSYQVINQQEILNAFNTISTTLTTALGAIAAISLVVGGIGIMNIMLVSVSERTREIGIRKALGAKKRAILLQFLIESIVISVCGGVIGIIIGVSGALIFGSVAGISSGITAGTIIFSFVFSLCIGVIFGIAPANKASKLRPIDALRSE
>NZ_JHZR01000010.1|WP_003722723.1|39365_40058_-|ABC-transporter-ATP-binding-protein
MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPSGSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNKLSEIRNKKIGFIFQQFNLLPKLSAFENVELPLIYAGLSVSAREKAAIECLEKVGLLEKRRNLPTQLSGGQQQRVAIARALAGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQDGKLFHEEATQA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_JHZR01000002

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CRISPR-Cas detection and classification

Crispr_ID: NZ_JHZR01000002_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JHZR01000002_1

286780-287128

Orphan

I-A

Consensus_repeat	Method
GTTTTAGTTACTTATTGTGAAATGTAAAT	PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	CRT
TTTTAGTTACTTATTGTGAAATGTAAAT	CRISPRCasFinder

5 spacers

The CRISPR arrays of NZ_JHZR01000002_1

>merge|NZ_JHZR01000002|1|286780-287128|PILER-CR,CRT,CRISPRCasFinder
GTTTTAGTTACTTATTGTGAAATGTAAATGCGATTTTTGTCAAAGGGACAGCGATGGGTTACAAGTTTTAGTTACTTATTGTGAAATGTAAATTTTTCTACTCCTGCTTCTAAAATGTCGTTTATAAGTTTTAGTTACTTATTGTGAAATGTAAATCTAAAACATCCTTCACTGTATCAACTCCTTTCTATATTTTAGTTACTTATTGTGAAATGTAAATAAAATAGGAGGAAATAAATTATGACTATCAAATTAAGTTTTAGTTACTTATTGTGAAATGTAAATTTTGTTGAATCAACGGATATAGATTTTACAATTTCGTTTTAGTTACTTATTGTGAAATGTAAAT

>NZ_JHZR01000002|1|1|286780-287128|PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT
ATTTTAGTTACTTATTGTGAAATGTAAAT	AAAATAGGAGGAAATAAATTATGACTATCAAATTAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTGTTGAATCAACGGATATAGATTTTACAATTTC
GTTTTAGTTACTTATTGTGAAATGTAAAT

>NZ_JHZR01000002|1|1|286780-287128|CRT
GTTTTAGTTACTTATTGTGAAATGTAAAT	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT
ATTTTAGTTACTTATTGTGAAATGTAAAT	AAAATAGGAGGAAATAAATTATGACTATCAAATTAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTGTTGAATCAACGGATATAGATTTTACAATTTC
GTTTTAGTTACTTATTGTGAAATGTAAAT

>NZ_JHZR01000002|1|1|286781-287128|CRISPRCasFinder
TTTTAGTTACTTATTGTGAAATGTAAAT	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAAG
TTTTAGTTACTTATTGTGAAATGTAAAT	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAAG
TTTTAGTTACTTATTGTGAAATGTAAAT	CTAAAACATCCTTCACTGTATCAACTCCTTTCTATA
TTTTAGTTACTTATTGTGAAATGTAAAT	AAAATAGGAGGAAATAAATTATGACTATCAAATTAAG
TTTTAGTTACTTATTGTGAAATGTAAAT	TTTGTTGAATCAACGGATATAGATTTTACAATTTCG
TTTTAGTTACTTATTGTGAAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_JHZR01000002.1\|WP_003721294.1\|284195_285467_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_JHZR01000002.1\|WP_003733192.1\|280655_281258_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
NZ_JHZR01000002.1\|WP_003721303.1\|294062_294878_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_JHZR01000002.1\|WP_026749758.1\|292511_293942_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_JHZR01000002.1\|WP_003721301.1\|292033_292465_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_JHZR01000002.1\|WP_003721295.1\|285606_286542_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_JHZR01000002.1\|WP_003733194.1\|277832_278483_+\|transaldolase	unknown	unknown	gnl\|CDD\|223254
NZ_JHZR01000002.1\|WP_009932856.1\|289275_289734_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_JHZR01000002.1\|WP_026749757.1\|290115_291933_+\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NZ_JHZR01000002.1\|WP_003733191.1\|281285_281753_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_JHZR01000002.1\|WP_009930756.1\|282825_283872_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_JHZR01000002.1\|WP_012951252.1\|295158_295527_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NZ_JHZR01000002.1\|WP_003721297.1\|288204_288885_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_JHZR01000002.1\|WP_014601718.1\|288909_289269_-\|Lin0512-family-protein	unknown	unknown	gnl\|CDD\|131113
NZ_JHZR01000002.1\|WP_012951245.1\|282178_282829_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_JHZR01000002.1\|WP_026749756.1\|281769_282168_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JHZR01000002.1\|WP_003721293.1\|283887_284181_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_JHZR01000002.1\|WP_012951247.1\|287519_288098_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JHZR01000002.1\|WP_003733193.1\|278591_280652_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_JHZR01000002.1\|WP_026749759.1\|295673_297089_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794

Protein	Function_ID	Function_description	E-value
NZ_JHZR01000002.1\|WP_003721294.1\|284195_285467_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
NZ_JHZR01000002.1\|WP_003733192.1\|280655_281258_+\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	1.15952e-75
NZ_JHZR01000002.1\|WP_003721303.1\|294062_294878_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NZ_JHZR01000002.1\|WP_026749758.1\|292511_293942_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	1.75323e-99
NZ_JHZR01000002.1\|WP_003721301.1\|292033_292465_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NZ_JHZR01000002.1\|WP_003721295.1\|285606_286542_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	2.38027e-153
NZ_JHZR01000002.1\|WP_003733194.1\|277832_278483_+\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	1.91243e-61
NZ_JHZR01000002.1\|WP_009932856.1\|289275_289734_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	9.15558e-13
NZ_JHZR01000002.1\|WP_026749757.1\|290115_291933_+\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	1.29531e-119
NZ_JHZR01000002.1\|WP_003733191.1\|281285_281753_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	2.76446e-37
NZ_JHZR01000002.1\|WP_009930756.1\|282825_283872_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
NZ_JHZR01000002.1\|WP_012951252.1\|295158_295527_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	8.73125e-42
NZ_JHZR01000002.1\|WP_003721297.1\|288204_288885_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	7.71833e-60
NZ_JHZR01000002.1\|WP_012951245.1\|282178_282829_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	8.25352e-108
NZ_JHZR01000002.1\|WP_014601718.1\|288909_289269_-\|Lin0512-family-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	4.36834e-66
NZ_JHZR01000002.1\|WP_003721293.1\|283887_284181_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
NZ_JHZR01000002.1\|WP_003733193.1\|278591_280652_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	3.95572e-80
NZ_JHZR01000002.1\|WP_026749759.1\|295673_297089_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.81243e-80

>NZ_JHZR01000002.1|WP_003721295.1|285606_286542_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSSIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NZ_JHZR01000002.1|WP_003721294.1|284195_285467_+|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>NZ_JHZR01000002.1|WP_003721293.1|283887_284181_+|PTS-sugar-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>NZ_JHZR01000002.1|WP_009930756.1|282825_283872_+|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPNELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>NZ_JHZR01000002.1|WP_012951245.1|282178_282829_+|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNAELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
>NZ_JHZR01000002.1|WP_026749756.1|281769_282168_+|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSVRNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>NZ_JHZR01000002.1|WP_003733191.1|281285_281753_+|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQNKEKLLAEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>NZ_JHZR01000002.1|WP_003733192.1|280655_281258_+|SIS-domain-containing-protein
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>NZ_JHZR01000002.1|WP_003733193.1|278591_280652_+|BglG-family-transcription-antiterminator
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKDPNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>NZ_JHZR01000002.1|WP_003733194.1|277832_278483_+|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRILELTDKQVFVQTVGFTYEEILADARMLLTMFGKDKIAIKIPAHEAGTNVIDTLKKEDKTIQILGTAIYSADQAITAALVGADFVAPYVNRMSAANIDPFKEISQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK
>NZ_JHZR01000002.1|WP_012951247.1|287519_288098_+|hypothetical-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTNTIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>NZ_JHZR01000002.1|WP_003721297.1|288204_288885_+|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLFFPESLNVFHWHQDTFALPTGSTRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
>NZ_JHZR01000002.1|WP_014601718.1|288909_289269_-|Lin0512-family-protein
MEQILFIQTGFGVDVHGQNITNAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>NZ_JHZR01000002.1|WP_009932856.1|289275_289734_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTSAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NZ_JHZR01000002.1|WP_026749757.1|290115_291933_+|lmo0514-family-class-1-internalin
MKKALKLFLAMICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSINNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSSRLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDATSEEQFLKDVHAETDDGTAVQSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITADSQISYKKESTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVNPVPPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>NZ_JHZR01000002.1|WP_003721301.1|292033_292465_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_JHZR01000002.1|WP_026749758.1|292511_293942_-|CapA-family-protein
MKRRTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSESKKTLNSLASSGADKASISDLNQLIKELKSYPVEKNDSGAYLQNLTACLEAVKSYTTGKADEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYNNCLPWFKSDDYTVINAESAFTNATKAENKMWRIKSDPAHVAFLPASGVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNADAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_JHZR01000002.1|WP_003721303.1|294062_294878_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_JHZR01000002.1|WP_012951252.1|295158_295527_-|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGMAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVAVLLV
>NZ_JHZR01000002.1|WP_026749759.1|295673_297089_+|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGLALGFFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGMGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_JHZR01000002_1	1.3\|286936\|35\|NZ_JHZR01000002\|PILER-CR,CRT	286936-286970	35	NZ_JHZR01000002.1	1028670-1028704	1	0.971
NZ_JHZR01000002_1	1.4\|287000\|36\|NZ_JHZR01000002\|PILER-CR,CRT	287000-287035	36	NZ_JHZR01000002.1	1011237-1011272	0	1.0
NZ_JHZR01000002_1	1.8\|286936\|36\|NZ_JHZR01000002\|CRISPRCasFinder	286936-286971	36	NZ_JHZR01000002.1	1028670-1028705	1	0.972

1. spacer 1.3|286936|35|NZ_JHZR01000002|PILER-CR,CRT matches to position: 1028670-1028704, mismatch: 1, identity: 0.971

ctaaaacatccttcactgtatcaactcctttctat	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctat	Protospacer
******************* ***************

2. spacer 1.4|287000|36|NZ_JHZR01000002|PILER-CR,CRT matches to position: 1011237-1011272, mismatch: 0, identity: 1.0

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaa	Protospacer
************************************

3. spacer 1.8|286936|36|NZ_JHZR01000002|CRISPRCasFinder matches to position: 1028670-1028705, mismatch: 1, identity: 0.972

ctaaaacatccttcactgtatcaactcctttctata	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctata	Protospacer
******************* ****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_JHZR01000002_1	1.4\|287000\|36\|NZ_JHZR01000002\|PILER-CR,CRT	287000-287035	36	MT500540	Listeria phage LP-HM00113468, complete genome	683-718	0	1.0
NZ_JHZR01000002_1	1.4\|287000\|36\|NZ_JHZR01000002\|PILER-CR,CRT	287000-287035	36	NC_009812	Listeria phage B025, complete genome	3896-3931	0	1.0
NZ_JHZR01000002_1	1.4\|287000\|36\|NZ_JHZR01000002\|PILER-CR,CRT	287000-287035	36	KJ094023	Listeria phage LP-101, complete genome	3936-3971	0	1.0
NZ_JHZR01000002_1	1.5\|287065\|35\|NZ_JHZR01000002\|PILER-CR,CRT	287065-287099	35	DQ003642	Listeria phage A006, complete genome	15712-15746	0	1.0
NZ_JHZR01000002_1	1.1\|286809\|35\|NZ_JHZR01000002\|PILER-CR,CRT	286809-286843	35	MH341453	Listeria phage PSU-VKH-LP041, complete genome	10139-10173	1	0.971
NZ_JHZR01000002_1	1.3\|286936\|35\|NZ_JHZR01000002\|PILER-CR,CRT	286936-286970	35	NC_021539	Listeria phage LP-030-2, complete genome	18926-18960	1	0.971
NZ_JHZR01000002_1	1.3\|286936\|35\|NZ_JHZR01000002\|PILER-CR,CRT	286936-286970	35	KJ094023	Listeria phage LP-101, complete genome	22882-22916	1	0.971
NZ_JHZR01000002_1	1.4\|287000\|36\|NZ_JHZR01000002\|PILER-CR,CRT	287000-287035	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	213463-213498	1	0.972
NZ_JHZR01000002_1	1.6\|286809\|36\|NZ_JHZR01000002\|CRISPRCasFinder	286809-286844	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	10139-10174	1	0.972
NZ_JHZR01000002_1	1.8\|286936\|36\|NZ_JHZR01000002\|CRISPRCasFinder	286936-286971	36	NC_021539	Listeria phage LP-030-2, complete genome	18926-18961	1	0.972
NZ_JHZR01000002_1	1.8\|286936\|36\|NZ_JHZR01000002\|CRISPRCasFinder	286936-286971	36	KJ094023	Listeria phage LP-101, complete genome	22882-22917	1	0.972
NZ_JHZR01000002_1	1.9\|287000\|37\|NZ_JHZR01000002\|CRISPRCasFinder	287000-287036	37	MT500540	Listeria phage LP-HM00113468, complete genome	682-718	1	0.973
NZ_JHZR01000002_1	1.9\|287000\|37\|NZ_JHZR01000002\|CRISPRCasFinder	287000-287036	37	NC_009812	Listeria phage B025, complete genome	3896-3932	1	0.973
NZ_JHZR01000002_1	1.9\|287000\|37\|NZ_JHZR01000002\|CRISPRCasFinder	287000-287036	37	KJ094023	Listeria phage LP-101, complete genome	3936-3972	1	0.973
NZ_JHZR01000002_1	1.10\|287065\|36\|NZ_JHZR01000002\|CRISPRCasFinder	287065-287100	36	DQ003642	Listeria phage A006, complete genome	15711-15746	1	0.972
NZ_JHZR01000002_1	1.1\|286809\|35\|NZ_JHZR01000002\|PILER-CR,CRT	286809-286843	35	NC_009813	Listeria phage B054, complete genome	10139-10173	2	0.943
NZ_JHZR01000002_1	1.3\|286936\|35\|NZ_JHZR01000002\|PILER-CR,CRT	286936-286970	35	NC_009812	Listeria phage B025, complete genome	23381-23415	2	0.943
NZ_JHZR01000002_1	1.6\|286809\|36\|NZ_JHZR01000002\|CRISPRCasFinder	286809-286844	36	NC_009813	Listeria phage B054, complete genome	10139-10174	2	0.944
NZ_JHZR01000002_1	1.8\|286936\|36\|NZ_JHZR01000002\|CRISPRCasFinder	286936-286971	36	NC_009812	Listeria phage B025, complete genome	23381-23416	2	0.944
NZ_JHZR01000002_1	1.9\|287000\|37\|NZ_JHZR01000002\|CRISPRCasFinder	287000-287036	37	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	213463-213499	2	0.946
NZ_JHZR01000002_1	1.4\|287000\|36\|NZ_JHZR01000002\|PILER-CR,CRT	287000-287035	36	JN700520	Staphylococcus phage StB12, complete genome	6832-6867	5	0.861
NZ_JHZR01000002_1	1.9\|287000\|37\|NZ_JHZR01000002\|CRISPRCasFinder	287000-287036	37	JN700520	Staphylococcus phage StB12, complete genome	6832-6868	6	0.838
NZ_JHZR01000002_1	1.4\|287000\|36\|NZ_JHZR01000002\|PILER-CR,CRT	287000-287035	36	MW084976	Bacillus phage Kirov, complete genome	27565-27600	8	0.778
NZ_JHZR01000002_1	1.9\|287000\|37\|NZ_JHZR01000002\|CRISPRCasFinder	287000-287036	37	MW084976	Bacillus phage Kirov, complete genome	27565-27601	9	0.757
NZ_JHZR01000002_1	1.5\|287065\|35\|NZ_JHZR01000002\|PILER-CR,CRT	287065-287099	35	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	130632-130666	11	0.686
NZ_JHZR01000002_1	1.5\|287065\|35\|NZ_JHZR01000002\|PILER-CR,CRT	287065-287099	35	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	17622-17656	11	0.686
NZ_JHZR01000002_1	1.5\|287065\|35\|NZ_JHZR01000002\|PILER-CR,CRT	287065-287099	35	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	31860-31894	11	0.686
NZ_JHZR01000002_1	1.5\|287065\|35\|NZ_JHZR01000002\|PILER-CR,CRT	287065-287099	35	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	338888-338922	11	0.686

1. spacer 1.4|287000|36|NZ_JHZR01000002|PILER-CR,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaa	Protospacer
************************************

2. spacer 1.4|287000|36|NZ_JHZR01000002|PILER-CR,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 0, identity: 1.0

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaa	Protospacer
************************************

3. spacer 1.4|287000|36|NZ_JHZR01000002|PILER-CR,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaa	Protospacer
************************************

4. spacer 1.5|287065|35|NZ_JHZR01000002|PILER-CR,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

tttgttgaatcaacggatatagattttacaatttc	CRISPR spacer
tttgttgaatcaacggatatagattttacaatttc	Protospacer
***********************************

5. spacer 1.1|286809|35|NZ_JHZR01000002|PILER-CR,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 1, identity: 0.971

gcgatttttgtcaaagggacagcgatgggttacaa	CRISPR spacer
gcgatttttgtcaaaggaacagcgatgggttacaa	Protospacer
*****************.*****************

6. spacer 1.3|286936|35|NZ_JHZR01000002|PILER-CR,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.971

ctaaaacatccttcactgtatcaactcctttctat	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctat	Protospacer
******************* ***************

7. spacer 1.3|286936|35|NZ_JHZR01000002|PILER-CR,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.971

ctaaaacatccttcactgtatcaactcctttctat	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctat	Protospacer
******************* ***************

8. spacer 1.4|287000|36|NZ_JHZR01000002|PILER-CR,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.972

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaatagattatgactatcaaattaa	Protospacer
****************.*******************

9. spacer 1.6|286809|36|NZ_JHZR01000002|CRISPRCasFinder matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 1, identity: 0.972

gcgatttttgtcaaagggacagcgatgggttacaag	CRISPR spacer
gcgatttttgtcaaaggaacagcgatgggttacaag	Protospacer
*****************.******************

10. spacer 1.8|286936|36|NZ_JHZR01000002|CRISPRCasFinder matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.972

ctaaaacatccttcactgtatcaactcctttctata	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctata	Protospacer
******************* ****************

11. spacer 1.8|286936|36|NZ_JHZR01000002|CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.972

ctaaaacatccttcactgtatcaactcctttctata	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctata	Protospacer
******************* ****************

12. spacer 1.9|287000|37|NZ_JHZR01000002|CRISPRCasFinder matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 1, identity: 0.973

aaaataggaggaaataaattatgactatcaaattaag	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaaa	Protospacer
************************************.

13. spacer 1.9|287000|37|NZ_JHZR01000002|CRISPRCasFinder matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.973

aaaataggaggaaataaattatgactatcaaattaag	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaaa	Protospacer
************************************.

14. spacer 1.9|287000|37|NZ_JHZR01000002|CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.973

aaaataggaggaaataaattatgactatcaaattaag	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaaa	Protospacer
************************************.

15. spacer 1.10|287065|36|NZ_JHZR01000002|CRISPRCasFinder matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.972

tttgttgaatcaacggatatagattttacaatttcg	CRISPR spacer
tttgttgaatcaacggatatagattttacaatttct	Protospacer
***********************************

16. spacer 1.1|286809|35|NZ_JHZR01000002|PILER-CR,CRT matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 2, identity: 0.943

gcgatttttgtcaaagggacagcgatgggttacaa	CRISPR spacer
gcgatttttgtcaaaggaacggcgatgggttacaa	Protospacer
*****************.**.**************

17. spacer 1.3|286936|35|NZ_JHZR01000002|PILER-CR,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.943

ctaaaacatccttcactgtatcaactcctttctat	CRISPR spacer
ctaaaacatccttcactatctcaactcctttctat	Protospacer
*****************.* ***************

18. spacer 1.6|286809|36|NZ_JHZR01000002|CRISPRCasFinder matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 2, identity: 0.944

gcgatttttgtcaaagggacagcgatgggttacaag	CRISPR spacer
gcgatttttgtcaaaggaacggcgatgggttacaag	Protospacer
*****************.**.***************

19. spacer 1.8|286936|36|NZ_JHZR01000002|CRISPRCasFinder matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.944

ctaaaacatccttcactgtatcaactcctttctata	CRISPR spacer
ctaaaacatccttcactatctcaactcctttctata	Protospacer
*****************.* ****************

20. spacer 1.9|287000|37|NZ_JHZR01000002|CRISPRCasFinder matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 2, identity: 0.946

aaaataggaggaaataaattatgactatcaaattaag	CRISPR spacer
aaaataggaggaaatagattatgactatcaaattaaa	Protospacer
****************.*******************.

21. spacer 1.4|287000|36|NZ_JHZR01000002|PILER-CR,CRT matches to JN700520 (Staphylococcus phage StB12, complete genome) position: , mismatch: 5, identity: 0.861

aaaataggaggaaataaattatgact-atcaaattaa	CRISPR spacer
taaataggaggaagtaaataatgactaatcaaacta-	Protospacer
 ************.***** ****** ******.**

22. spacer 1.9|287000|37|NZ_JHZR01000002|CRISPRCasFinder matches to JN700520 (Staphylococcus phage StB12, complete genome) position: , mismatch: 6, identity: 0.838

aaaataggaggaaataaattatgact-atcaaattaag	CRISPR spacer
taaataggaggaagtaaataatgactaatcaaactat-	Protospacer
 ************.***** ****** ******.**

23. spacer 1.4|287000|36|NZ_JHZR01000002|PILER-CR,CRT matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 8, identity: 0.778

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
ttaataggaggaaataaataatggctatcgtaagaa	Protospacer
  ***************** ***.*****. *  **

24. spacer 1.9|287000|37|NZ_JHZR01000002|CRISPRCasFinder matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 9, identity: 0.757

aaaataggaggaaataaattatgactatcaaattaag	CRISPR spacer
ttaataggaggaaataaataatggctatcgtaagaaa	Protospacer
  ***************** ***.*****. *  **.

25. spacer 1.5|287065|35|NZ_JHZR01000002|PILER-CR,CRT matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 11, identity: 0.686

tttgttgaatcaacggatatagattttacaatttc	CRISPR spacer
agaaaaaaatcaaccgatatagattttaaaatctt	Protospacer
   .  .******* ************* ***.*.

26. spacer 1.5|287065|35|NZ_JHZR01000002|PILER-CR,CRT matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 11, identity: 0.686

tttgttgaatcaacggatatagattttacaatttc	CRISPR spacer
aagaaaaaatcaaccgatatagattttaaaatctt	Protospacer
   .  .******* ************* ***.*.

27. spacer 1.5|287065|35|NZ_JHZR01000002|PILER-CR,CRT matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.686

tttgttgaatcaacggatatagattttacaatttc	CRISPR spacer
agaaaaaaatcaaccgatatagattttaaaatctt	Protospacer
   .  .******* ************* ***.*.

28. spacer 1.5|287065|35|NZ_JHZR01000002|PILER-CR,CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.686

tttgttgaatcaacggatatagattttacaatttc	CRISPR spacer
agaaaaaaatcaaccgatatagattttaaaatctt	Protospacer
   .  .******* ************* ***.*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

867377 : 874800

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721506.1\|867377_867761_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
WP_026749861.1\|867782_868766_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.1e-12	34.6
WP_026749862.1\|868780_869794_+	glycosyltransferase	A0A1V0SAH6	Catovirus	7.9e-11	32.0
WP_003721509.1\|870002_871493_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_003727000.1\|871504_872329_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	9.7e-68	52.6
WP_023549061.1\|872341_872650_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003732712.1\|872710_873115_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_020246560.1\|873243_874800_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.3e-17	28.1

DBSCAN-SWA_2

962026 : 1067024

116

Listeria_phage(67.16%)

capsid,integrase,tail,portal,protease,holin,terminase,tRNA

attL 969302:969318|attR 1007920:1007936

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003736387.1\|962026_963079_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	2.1e-27	36.0
WP_026749897.1\|963078_965487_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_026749898.1\|965647_966349_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-33	35.8
WP_026749899.1\|966362_969773_+	FtsX-like permease family protein	NA	NA	NA	NA
969302:969318	attL	NA	NA	NA	NA
WP_003721623.1\|969870_970323_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_026749900.1\|970338_973539_+	MMPL family transporter	NA	NA	NA	NA
WP_003732773.1\|973645_974320_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	7.5e-50	47.7
WP_077914484.1\|974357_975284_-	ribonuclease HIII	NA	NA	NA	NA
WP_003740576.1\|975437_975701_+	cell division protein ZapA	NA	NA	NA	NA
WP_003723849.1\|975700_976243_+	CvpA family protein	NA	NA	NA	NA
WP_003723851.1\|976335_978048_+	DNA polymerase/3'-5' exonuclease PolX	A0A2H4UV14	Bodo_saltans_virus	5.1e-18	24.8
WP_003732776.1\|978070_980428_+	endonuclease MutS2	Q94M10	Lactobacillus_phage	1.0e-21	50.4
WP_008947590.1\|980508_980820_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	1.2e-18	38.6
WP_014600780.1\|980895_982707_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_003732778.1\|982895_984110_+	aspartate kinase	NA	NA	NA	NA
WP_003733801.1\|984165_984660_-	YslB family protein	NA	NA	NA	NA
WP_003723856.1\|984807_985608_+	glutamate racemase	NA	NA	NA	NA
WP_003732780.1\|985620_986367_+	ribonuclease PH	NA	NA	NA	NA
WP_014600781.1\|986370_986982_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_012951515.1\|987018_987543_+	metallophosphoesterase	NA	NA	NA	NA
WP_026749902.1\|987828_988983_-\|integrase	site-specific integrase	A8ATC7	Listeria_phage	4.1e-213	97.1
WP_012951517.1\|989126_989783_-	DUF4352 domain-containing protein	NA	NA	NA	NA
WP_026749903.1\|989834_990287_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	8.5e-82	96.0
WP_026749904.1\|990303_990627_-	helix-turn-helix transcriptional regulator	A0A059T6G1	Listeria_phage	8.5e-36	71.0
WP_009929535.1\|991431_991755_+	hypothetical protein	NA	NA	NA	NA
WP_009929536.1\|991769_991973_+	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	3.1e-28	100.0
WP_015987310.1\|991974_992217_+	hypothetical protein	A8ATD2	Listeria_phage	1.4e-43	100.0
WP_009929539.1\|992219_992405_+	hypothetical protein	A0A059T7Z3	Listeria_phage	1.7e-28	96.7
WP_009931096.1\|992639_992792_+	hypothetical protein	A0A059T7S2	Listeria_phage	3.4e-19	98.0
WP_026749905.1\|992928_993183_+	hypothetical protein	A0A059T6G3	Listeria_phage	4.3e-35	91.5
WP_026749906.1\|993200_994163_+	DNA cytosine methyltransferase	H7BVD3	unidentified_phage	1.2e-48	37.3
WP_026749907.1\|994174_994780_+	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	9.1e-39	47.4
WP_026749908.1\|994838_995432_+	pentapeptide repeat-containing protein	A0A060AFJ6	Listeria_phage	7.3e-41	76.9
WP_026749909.1\|995428_995932_+	hypothetical protein	NA	NA	NA	NA
WP_026749910.1\|995952_996471_+	hypothetical protein	NA	NA	NA	NA
WP_026749911.1\|996470_996653_+	hypothetical protein	NA	NA	NA	NA
WP_026749912.1\|996649_997084_+	hypothetical protein	A8ATS7	Listeria_phage	1.9e-38	53.5
WP_167797548.1\|997116_997290_+	hypothetical protein	A0A059T5G3	Listeria_phage	4.4e-23	96.5
WP_026749913.1\|997286_997670_+	hypothetical protein	A0A059T6A2	Listeria_phage	2.7e-65	98.4
WP_026749914.1\|997671_998151_+	siphovirus Gp157 family protein	A0A059T803	Listeria_phage	9.3e-79	99.4
WP_009911358.1\|998163_998853_+	AAA family ATPase	A0A059T7T3	Listeria_phage	7.5e-130	99.6
WP_026749915.1\|998916_1000173_+	DEAD/DEAH box helicase	Q8W5V9	Listeria_phage	5.4e-219	90.0
WP_026749916.1\|1000196_1000694_+	DUF669 domain-containing protein	A0A059T5G4	Listeria_phage	3.2e-50	57.3
WP_026749917.1\|1000713_1002987_+	DNA primase	R4IBW2	Listeria_phage	0.0e+00	74.3
WP_014929539.1\|1003127_1003448_+	VRR-NUC domain-containing protein	Q8W5V6	Listeria_phage	1.2e-53	98.1
WP_039389924.1\|1003444_1003714_+	hypothetical protein	W0GBM0	Listeria_phage	5.3e-15	73.6
WP_026749918.1\|1003824_1004355_+	DUF3310 domain-containing protein	A0A059T7T5	Listeria_phage	3.3e-77	77.8
WP_026749919.1\|1004355_1004781_+	DUF722 domain-containing protein	Q8W5V4	Listeria_phage	4.5e-69	93.6
WP_009928013.1\|1005010_1005910_+	hypothetical protein	NA	NA	NA	NA
WP_026749920.1\|1006169_1006496_+	hypothetical protein	A0A059T5G5	Listeria_phage	8.3e-55	98.1
WP_009928009.1\|1006495_1006810_+	HNH endonuclease	A8ATF8	Listeria_phage	3.8e-57	99.0
WP_012951543.1\|1006859_1007216_+\|terminase	P27 family phage terminase small subunit	A0A059T7Y1	Listeria_phage	2.0e-46	98.0
WP_026749921.1\|1007212_1008856_+\|terminase	terminase large subunit	A0A059T7Q8	Listeria_phage	0.0e+00	99.6
1007920:1007936	attR	NA	NA	NA	NA
WP_009917707.1\|1008865_1009255_-	DUF2513 domain-containing protein	A0A1Q1PVT8	Staphylococcus_phage	3.7e-17	39.8
WP_026749922.1\|1009305_1010436_+\|portal	phage portal protein	A0A059T6F0	Listeria_phage	6.1e-214	99.2
WP_026749923.1\|1010432_1011230_+\|protease	Clp protease ClpP	A0A059T5F2	Listeria_phage	6.2e-144	99.6
WP_014930913.1\|1011256_1012408_+\|capsid	phage major capsid protein	A0A059T678	Listeria_phage	6.3e-214	100.0
WP_167620291.1\|1012414_1012585_+	hypothetical protein	A0A059T7Y2	Listeria_phage	2.4e-21	98.2
WP_014930914.1\|1012594_1012894_+	hypothetical protein	A0A059T7R0	Listeria_phage	5.3e-48	100.0
WP_025370587.1\|1012877_1013243_+	hypothetical protein	A0A059T6F2	Listeria_phage	2.4e-63	99.2
WP_026747164.1\|1013239_1013641_+	hypothetical protein	A8ATA2	Listeria_phage	5.2e-67	97.0
WP_026749924.1\|1013637_1014021_+	hypothetical protein	A0A059T681	Listeria_phage	2.1e-65	96.9
WP_025370590.1\|1014041_1014629_+\|tail	phage tail protein	A0A059T7Y4	Listeria_phage	1.3e-106	99.0
WP_025370591.1\|1014699_1015032_+	hypothetical protein	A0A059T7R2	Listeria_phage	8.7e-52	97.3
WP_009931626.1\|1015082_1015244_+	hypothetical protein	A0A059T6F4	Listeria_phage	4.3e-20	98.0
WP_026749925.1\|1015247_1020158_+\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	96.0
WP_026749926.1\|1020154_1021804_+\|tail	phage tail family protein	A0A059T682	Listeria_phage	0.0e+00	99.3
WP_026749927.1\|1021816_1024111_+\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	0.0e+00	99.2
WP_026749928.1\|1024100_1025195_+	hypothetical protein	A0A059T7R4	Listeria_phage	1.9e-175	84.9
WP_003733957.1\|1025245_1025551_+	hypothetical protein	A0A059T5E6	Listeria_phage	1.8e-43	100.0
WP_014929558.1\|1025550_1025832_+\|holin	phage holin	A8ATW3	Listeria_phage	6.7e-45	98.9
WP_077914485.1\|1025828_1026683_+	N-acetylmuramoyl-L-alanine amidase	P89923	Bacillus_phage	8.1e-33	50.6
WP_026749929.1\|1027287_1027797_+	hypothetical protein	NA	NA	NA	NA
WP_026749930.1\|1028192_1028378_-	hypothetical protein	A0A059T7Z0	Listeria_phage	5.4e-19	89.7
WP_031664868.1\|1028818_1029052_+	hypothetical protein	A8ATC5	Listeria_phage	1.1e-32	89.6
WP_012951565.1\|1029700_1031059_+	DUF1254 domain-containing protein	M1HNU9	Paramecium_bursaria_Chlorella_virus	7.6e-09	21.6
WP_009924171.1\|1031099_1031693_-	YdeI/OmpD-associated family protein	NA	NA	NA	NA
WP_026749931.1\|1031846_1032254_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA
WP_009924169.1\|1032421_1033021_+	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	5.8e-30	41.0
WP_026749932.1\|1033052_1033313_-	hypothetical protein	NA	NA	NA	NA
WP_026749933.1\|1033436_1034849_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.9e-51	32.0
WP_003723545.1\|1034873_1035137_+	DUF3116 family protein	NA	NA	NA	NA
WP_003723546.1\|1035304_1035781_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
WP_012951567.1\|1035818_1036064_-	hypothetical protein	NA	NA	NA	NA
WP_012951568.1\|1036060_1037266_-	MFS transporter	NA	NA	NA	NA
WP_003723549.1\|1037470_1038130_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_003723550.1\|1038171_1038366_-	hypothetical protein	NA	NA	NA	NA
WP_003723551.1\|1038432_1039281_-	YitT family protein	NA	NA	NA	NA
WP_003723553.1\|1039612_1039750_-	hypothetical protein	NA	NA	NA	NA
WP_009931701.1\|1039900_1040614_+	trehalose operon repressor	NA	NA	NA	NA
WP_026749934.1\|1040644_1042291_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_003723556.1\|1042309_1043794_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA
WP_003723557.1\|1043909_1044362_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_012951571.1\|1044408_1044873_-	hypothetical protein	NA	NA	NA	NA
WP_003723559.1\|1045061_1045982_+	alpha/beta hydrolase	Q6TUZ7	Yaba_monkey_tumor_virus	1.1e-14	26.1
WP_003723560.1\|1046001_1047249_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.2e-106	51.8
WP_003723561.1\|1047232_1048063_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.3e-47	42.4
WP_026749935.1\|1048198_1049338_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003723563.1\|1049418_1049814_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|1049964_1050180_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003732794.1\|1050298_1050832_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003732795.1\|1050849_1051515_+	hypothetical protein	NA	NA	NA	NA
WP_003732796.1\|1051776_1052715_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|1052829_1054113_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|1054297_1055557_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_003723887.1\|1055675_1056242_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_003723888.1\|1056276_1056846_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003723889.1\|1056947_1057490_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003723890.1\|1057499_1058363_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_023548886.1\|1058359_1059145_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	3.0e-26	39.2
WP_003723892.1\|1059278_1060139_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	1.2e-39	43.2
WP_009924617.1\|1060410_1062489_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	1.4e-107	37.7
WP_009924616.1\|1062551_1063856_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_009911635.1\|1064138_1065041_+	tyrosine recombinase XerC	A0A1B1IQT7	uncultured_Mediterranean_phage	8.0e-23	28.0
WP_003724001.1\|1065061_1065601_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_010989722.1\|1065614_1067024_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IBU3	Erwinia_phage	5.2e-29	25.9

Anti-CRISPR protein detection

Acr_ID: NZ_JHZR01000002.1|WP_003723550.1|1038171_1038366_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_JHZR01000002.1|WP_003723553.1|1039612_1039750_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_JHZR01000002.1|WP_003723550.1|1038171_1038366_-|hypothetical-protein

1038171_1038366_-

64 aa aa

WHTH_GntR

Identity	Hit_domain_coverage
0.4	0.9090909090909091

962026-1067024

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_JHZR01000002_1	Orphan	1.3\|286936\|35\|NZ_JHZR01000002\|PILER-CR,CRT	286936-286970	35	1028670-1028704	1
NZ_JHZR01000002_1	Orphan	1.4\|287000\|36\|NZ_JHZR01000002\|PILER-CR,CRT	287000-287035	36	1011237-1011272	0
NZ_JHZR01000002_1	Orphan	1.8\|286936\|36\|NZ_JHZR01000002\|CRISPRCasFinder	286936-286971	36	1028670-1028705	1

1. spacer 1.3|286936|35|NZ_JHZR01000002|PILER-CR,CRT matches to NZ_JHZR01000002 position: 1028670-1028704, mismatch: 1

ctaaaacatccttcactgtatcaactcctttctat	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctat	Protospacer
******************* ***************

2. spacer 1.4|287000|36|NZ_JHZR01000002|PILER-CR,CRT matches to NZ_JHZR01000002 position: 1011237-1011272, mismatch: 0

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaa	Protospacer
************************************

3. spacer 1.8|286936|36|NZ_JHZR01000002|CRISPRCasFinder matches to NZ_JHZR01000002 position: 1028670-1028705, mismatch: 1

ctaaaacatccttcactgtatcaactcctttctata	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctata	Protospacer
******************* ****************

NZ_JHZR01000002.1|WP_003723553.1|1039612_1039750_-|hypothetical-protein

1039612_1039750_-

45 aa aa

WHTH_GntR

Identity	Hit_domain_coverage
0.4	0.9090909090909091

962026-1067024

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_JHZR01000002_1	Orphan	1.3\|286936\|35\|NZ_JHZR01000002\|PILER-CR,CRT	286936-286970	35	1028670-1028704	1
NZ_JHZR01000002_1	Orphan	1.4\|287000\|36\|NZ_JHZR01000002\|PILER-CR,CRT	287000-287035	36	1011237-1011272	0
NZ_JHZR01000002_1	Orphan	1.8\|286936\|36\|NZ_JHZR01000002\|CRISPRCasFinder	286936-286971	36	1028670-1028705	1

1. spacer 1.3|286936|35|NZ_JHZR01000002|PILER-CR,CRT matches to NZ_JHZR01000002 position: 1028670-1028704, mismatch: 1

ctaaaacatccttcactgtatcaactcctttctat	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctat	Protospacer
******************* ***************

2. spacer 1.4|287000|36|NZ_JHZR01000002|PILER-CR,CRT matches to NZ_JHZR01000002 position: 1011237-1011272, mismatch: 0

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaa	Protospacer
************************************

3. spacer 1.8|286936|36|NZ_JHZR01000002|CRISPRCasFinder matches to NZ_JHZR01000002 position: 1028670-1028705, mismatch: 1

ctaaaacatccttcactgtatcaactcctttctata	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctata	Protospacer
******************* ****************

5. NZ_JHZR01000008

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2820 : 11106

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003729814.1\|2820_4113_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0
WP_014931516.1\|4193_4907_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	8.8e-41	37.8
WP_003722248.1\|4918_5164_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003733240.1\|5167_5851_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_014602076.1\|5843_8063_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.3e-159	41.2
WP_003722245.1\|8047_9475_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_012951771.1\|9493_10543_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	4.6e-62	43.5
WP_003722243.1\|10539_11106_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage