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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_JPKT01000045 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_45, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000066 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_66, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000080 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_80, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000026 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_26, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000031 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_31, whole genome shotgun sequence 0 crisprs NA 0 0 1 0
NZ_JPKT01000022 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_22, whole genome shotgun sequence 0 crisprs csa3 0 0 0 0
NZ_JPKT01000006 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_6, whole genome shotgun sequence 0 crisprs cas3,DinG,RT 0 0 2 0
NZ_JPKT01000074 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_74, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000062 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_62, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000077 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_77, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000068 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_68, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000047 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_47, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000027 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_27, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000078 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_78, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000002 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_2, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000017 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_17, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000081 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_81, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000004 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_4, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000019 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_19, whole genome shotgun sequence 0 crisprs cas3,csa3 0 0 0 0
NZ_JPKT01000064 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_64, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000046 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_46, whole genome shotgun sequence 0 crisprs PD-DExK 0 0 0 0
NZ_JPKT01000041 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_41, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000011 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_11, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000072 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_72, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000076 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_76, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000049 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_49, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000015 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_15, whole genome shotgun sequence 0 crisprs DEDDh 0 0 0 0
NZ_JPKT01000057 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_57, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000023 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_23, whole genome shotgun sequence 0 crisprs DEDDh 0 0 0 0
NZ_JPKT01000035 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_35, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000024 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_24, whole genome shotgun sequence 0 crisprs DEDDh 0 0 0 0
NZ_JPKT01000059 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_59, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000061 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_61, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000053 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_53, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000040 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_40, whole genome shotgun sequence 0 crisprs NA 0 0 1 0
NZ_JPKT01000020 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_20, whole genome shotgun sequence 0 crisprs csa3,DinG 0 0 0 0
NZ_JPKT01000052 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_52, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000051 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_51, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000055 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_55, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000075 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_75, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000008 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_8, whole genome shotgun sequence 0 crisprs cas3,DEDDh,WYL,csa3 0 0 0 0
NZ_JPKT01000082 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_82, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000073 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_73, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000060 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_60, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000069 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_69, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000012 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_12, whole genome shotgun sequence 0 crisprs DEDDh,csa3 0 0 1 0
NZ_JPKT01000079 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_79, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000065 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_65, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000014 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_14, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000009 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_9, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000038 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_38, whole genome shotgun sequence 0 crisprs PD-DExK 0 0 0 0
NZ_JPKT01000043 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_43, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000067 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_67, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000007 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_7, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000029 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_29, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000018 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_18, whole genome shotgun sequence 0 crisprs WYL 0 0 0 0
NZ_JPKT01000030 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_30, whole genome shotgun sequence 0 crisprs cas3 0 0 0 0
NZ_JPKT01000036 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_36, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000039 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_39, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000010 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_10, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000032 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_32, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000056 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_56, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000034 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_34, whole genome shotgun sequence 0 crisprs DinG 0 0 0 0
NZ_JPKT01000021 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_21, whole genome shotgun sequence 0 crisprs DEDDh 0 0 0 0
NZ_JPKT01000005 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_5, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000071 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_71, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000025 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_25, whole genome shotgun sequence 0 crisprs csx1,cas3 0 0 0 0
NZ_JPKT01000003 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_3, whole genome shotgun sequence 0 crisprs NA 0 0 0 2
NZ_JPKT01000042 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_42, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000070 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_70, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000058 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_58, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000050 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_50, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000016 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_16, whole genome shotgun sequence 1 crisprs DEDDh,cas3 0 0 0 0
NZ_JPKT01000063 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_63, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000044 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_44, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000033 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_33, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000001 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_1, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000048 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_48, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000037 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_37, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000013 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_13, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000028 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_28, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKT01000054 Vibrio parahaemolyticus strain NCKU_TV_5HP 5HP_contig_54, whole genome shotgun sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_JPKT01000012
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 177007 : 195598 22 Vibrio_phage(86.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_JPKT01000040
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 70494 : 85956 14 uncultured_Mediterranean_phage(22.22%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_JPKT01000031
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 178272 : 187372 11 Vibrio_phage(85.71%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_JPKT01000003
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
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Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_JPKT01000003.1|WP_031500045.1|5201_5408_+|hypothetical-protein 5201_5408_+ 68 aa aa AcrIF9 NA NZ_JPKT01000003.1_5450_5810_+ No NA
NZ_JPKT01000003.1|WP_031500041.1|1906_2647_+|hypothetical-protein 1906_2647_+ 246 aa aa NA NA NZ_JPKT01000003.1_5450_5810_+ No NA
5. NZ_JPKT01000006
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 262158 : 268860 7 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_2 368692 : 379326 13 Moumouvirus(12.5%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
6. NZ_JPKT01000016
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_JPKT01000016_1 63893-63990 Orphan NA
1 spacers
DEDDh

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Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage