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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_JPKS01000096 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_96, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000044 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_44, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000095 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_95, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000006 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_6, whole genome shotgun sequence 0 crisprs cas3,csx1,DinG,RT 0 0 2 0
NZ_JPKS01000032 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_32, whole genome shotgun sequence 0 crisprs WYL 0 0 0 0
NZ_JPKS01000100 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_100, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000068 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_68, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000072 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_72, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000092 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_92, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000052 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_52, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000086 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_86, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000051 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_51, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000027 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_27, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000031 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_31, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000047 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_47, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000023 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_23, whole genome shotgun sequence 0 crisprs DEDDh 0 0 0 0
NZ_JPKS01000042 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_42, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000066 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_66, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000059 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_59, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000024 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_24, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000065 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_65, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000014 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_14, whole genome shotgun sequence 0 crisprs cas3 0 0 0 0
NZ_JPKS01000084 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_84, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000040 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_40, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000036 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_36, whole genome shotgun sequence 0 crisprs DEDDh,csa3 0 0 1 0
NZ_JPKS01000053 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_53, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000002 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_2, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000093 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_93, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000048 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_48, whole genome shotgun sequence 0 crisprs csa3 0 0 0 0
NZ_JPKS01000009 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_9, whole genome shotgun sequence 0 crisprs DEDDh 0 0 0 0
NZ_JPKS01000012 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_12, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000069 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_69, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000049 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_49, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000010 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_10, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000018 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_18, whole genome shotgun sequence 0 crisprs NA 0 0 1 0
NZ_JPKS01000061 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_61, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000088 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_88, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000087 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_87, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000035 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_35, whole genome shotgun sequence 0 crisprs NA 0 0 1 0
NZ_JPKS01000060 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_60, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000098 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_98, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000071 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_71, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000067 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_67, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000083 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_83, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000005 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_5, whole genome shotgun sequence 1 crisprs cas3,DEDDh 0 0 0 0
NZ_JPKS01000089 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_89, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000094 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_94, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000075 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_75, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000045 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_45, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000034 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_34, whole genome shotgun sequence 0 crisprs PD-DExK 0 0 0 0
NZ_JPKS01000039 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_39, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000033 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_33, whole genome shotgun sequence 0 crisprs DEDDh 0 0 0 0
NZ_JPKS01000097 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_97, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000078 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_78, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000028 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_28, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000090 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_90, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000026 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_26, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000038 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_38, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000056 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_56, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000073 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_73, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000008 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_8, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000057 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_57, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000004 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_4, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000070 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_70, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000025 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_25, whole genome shotgun sequence 0 crisprs PD-DExK 0 0 0 1
NZ_JPKS01000074 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_74, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000001 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_1, whole genome shotgun sequence 0 crisprs DinG 0 0 0 0
NZ_JPKS01000085 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_85, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000037 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_37, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000079 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_79, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000011 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_11, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000030 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_30, whole genome shotgun sequence 0 crisprs cas3,csa3 0 0 0 0
NZ_JPKS01000016 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_16, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000003 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_3, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000055 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_55, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000063 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_63, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000029 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_29, whole genome shotgun sequence 0 crisprs cas3 0 0 0 0
NZ_JPKS01000082 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_82, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000020 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_20, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000076 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_76, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000080 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_80, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000041 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_41, whole genome shotgun sequence 0 crisprs DEDDh,csa3,WYL,cas3 0 0 0 0
NZ_JPKS01000050 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_50, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000021 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_21, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000013 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_13, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000046 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_46, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000054 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_54, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000062 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_62, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000022 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_22, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000007 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_7, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000099 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_99, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000064 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_64, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000058 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_58, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000077 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_77, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000043 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_43, whole genome shotgun sequence 0 crisprs DinG 0 0 0 0
NZ_JPKS01000081 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_81, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000015 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_15, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000019 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_19, whole genome shotgun sequence 0 crisprs DEDDh 0 0 0 0
NZ_JPKS01000091 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_91, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JPKS01000017 Vibrio parahaemolyticus strain NCKU_TV_3HP 3HP_contig_17, whole genome shotgun sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_JPKS01000018
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 70497 : 85959 14 uncultured_Mediterranean_phage(22.22%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_JPKS01000036
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 177007 : 195598 22 Vibrio_phage(86.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_JPKS01000035
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 177111 : 186211 11 Vibrio_phage(85.71%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_JPKS01000005
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_JPKS01000005_1 635120-635217 Orphan NA
1 spacers
DEDDh

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
5. NZ_JPKS01000006
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 327662 : 334364 7 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_2 434197 : 444831 13 Moumouvirus(12.5%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
6. NZ_JPKS01000025
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_JPKS01000025.1|WP_031500045.1|577_784_+|hypothetical-protein 577_784_+ 68 aa aa AcrIF9 NA NZ_JPKS01000025.1_826_1186_+ No NA