CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011376	Moraxella bovoculi strain 22581, complete genome	3 crisprs	cas12a,cas4,cas1,cas2,DEDDh,cas14j,WYL,cas3,c2c9_V-U4	9	10	8	6

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011376_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011376_1

50580-51633

TypeV-A,TypeI-A

Consensus_repeat	Method
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CRISPRCasFinder
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CRT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	PILER-CR
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	PILER-CR

16 spacers

cas2,cas1,cas4,cas12a,csa3

The CRISPR arrays of NZ_CP011376_1

>merge|NZ_CP011376|1|50580-51633|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATATGGTTAATGATGATAACCCAGATTTAATGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATATATCCATCTACTAACCATCGCAAAAAGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATGTTTTGAATATAGGACTAATGCCCCTAAGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATATTGGTTTGTGTAACGGGGAAATTAAGGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATTTTAGAAATCACGGATCATTATATATGTGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATTCAAAAATGGTAGCATTTGTTAAGAATGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATATTGATGTAAACATCGATGGTGTGGTTGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATTGCAGGTGGTGAATCAGCGACACATTCGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATCCTCCTCAATTAGCCTTGCAAAATGATATGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATTCATGGCGTAGTTGCTACGCTGTAATGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATTGGGAATATTATAGCAGATTTATTTAATTGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATAAGCGGTTCACAAAAACCACTCATTAAGGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATCTAAATGCCGTGTCGTTTTGGTTCTTATGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATCTGTGGCTTTCATGTCACACCTCTCAGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATGGAACCTGTTCGCCGCTTGGATGTTACGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATGTCTTGGATAGTATGCAGTCGCATCAGCGGTCTAACGACCTTTTAAATTTCTACTGTTCTTTTAA

>NZ_CP011376|1|1|50580-51633|CRISPRCasFinder
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	ATGGTTAATGATGATAACCCAGATTTAAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	ATATCCATCTACTAACCATCGCAAAAA
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	GTTTTGAATATAGGACTAATGCCCCTAA
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	ATTGGTTTGTGTAACGGGGAAATTAAG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TTTAGAAATCACGGATCATTATATATGT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TCAAAAATGGTAGCATTTGTTAAGAAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	ATTGATGTAAACATCGATGGTGTGGTT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TGCAGGTGGTGAATCAGCGACACATTC
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CCTCCTCAATTAGCCTTGCAAAATGATAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TCATGGCGTAGTTGCTACGCTGTAAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TGGGAATATTATAGCAGATTTATTTAATT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	AAGCGGTTCACAAAAACCACTCATTAAG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CTAAATGCCGTGTCGTTTTGGTTCTTAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CTGTGGCTTTCATGTCACACCTCTCA
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	GGAACCTGTTCGCCGCTTGGATGTTAC
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	GTCTTGGATAGTATGCAGTCGCATCAGCG
GTCTAACGACCTTTTAAATTTCTACTGTTCTTTTAA

>NZ_CP011376|1|1|50580-51633|CRT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	ATGGTTAATGATGATAACCCAGATTTAAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	ATATCCATCTACTAACCATCGCAAAAA
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	GTTTTGAATATAGGACTAATGCCCCTAA
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	ATTGGTTTGTGTAACGGGGAAATTAAG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TTTAGAAATCACGGATCATTATATATGT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TCAAAAATGGTAGCATTTGTTAAGAAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	ATTGATGTAAACATCGATGGTGTGGTT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TGCAGGTGGTGAATCAGCGACACATTC
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CCTCCTCAATTAGCCTTGCAAAATGATAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TCATGGCGTAGTTGCTACGCTGTAAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TGGGAATATTATAGCAGATTTATTTAATT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	AAGCGGTTCACAAAAACCACTCATTAAG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CTAAATGCCGTGTCGTTTTGGTTCTTAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CTGTGGCTTTCATGTCACACCTCTCA
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	GGAACCTGTTCGCCGCTTGGATGTTAC
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	GTCTTGGATAGTATGCAGTCGCATCAGCG
GTCTAACGACCTTTTAAATTTCTACTGTTCTTTTAA

>NZ_CP011376|1|1|50708-50870|PILER-CR
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	GTTTTGAATATAGGACTAATGCCCCTAA
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	ATTGGTTTGTGTAACGGGGAAATTAAG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATTTTAGAAATCACGGATCATTATATATGTGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TCAAAAATGGTAGCATTTGTTAAGAAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	ATTGATGTAAACATCGATGGTGTGGTT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TGCAGGTGGTGAATCAGCGACACATTC
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CCTCCTCAATTAGCCTTGCAAAATGATAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TCATGGCGTAGTTGCTACGCTGTAAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TGGGAATATTATAGCAGATTTATTTAATT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	AAGCGGTTCACAAAAACCACTCATTAAG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CTAAATGCCGTGTCGTTTTGGTTCTTAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CTGTGGCTTTCATGTCACACCTCTCA
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	GGAACCTGTTCGCCGCTTGGATGTTAC


>NZ_CP011376|1|2|50899-51568|PILER-CR
	GTTTTGAATATAGGACTAATGCCCCTAA
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	ATTGGTTTGTGTAACGGGGAAATTAAG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATTTTAGAAATCACGGATCATTATATATGTGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TCAAAAATGGTAGCATTTGTTAAGAAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	ATTGATGTAAACATCGATGGTGTGGTT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TGCAGGTGGTGAATCAGCGACACATTC
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CCTCCTCAATTAGCCTTGCAAAATGATAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TCATGGCGTAGTTGCTACGCTGTAAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TGGGAATATTATAGCAGATTTATTTAATT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	AAGCGGTTCACAAAAACCACTCATTAAG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CTAAATGCCGTGTCGTTTTGGTTCTTAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CTGTGGCTTTCATGTCACACCTCTCA
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	GGAACCTGTTCGCCGCTTGGATGTTAC
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011376.1\|WP_046695844.1\|57109_58201_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|275201
NZ_CP011376.1\|WP_046695847.1\|61824_63099_-\|citrate-(Si)-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP011376.1\|WP_046695842.1\|54129_55632_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP011376.1\|WP_046695836.1\|42380_42881_+\|putative-4-hydroxy-4-methyl-2-oxoglutarate-aldolase	unknown	unknown	gnl\|CDD\|236487
NZ_CP011376.1\|WP_046699066.1\|44703_48489_+\|type-V-CRISPR-associated-protein-Cas12a/Cpf1	cas12a	cas12a_cpf1_CAS-V-A	gnl\|CDD\|275131
NZ_CP011376.1\|WP_080945869.1\|49103_50132_+\|type-V-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|213942
NZ_CP011376.1\|WP_046695839.1\|50128_50398_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP011376.1\|WP_046695837.1\|43157_44369_+\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
NZ_CP011376.1\|WP_046699065.1\|39796_40786_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP011376.1\|WP_046695846.1\|59264_61652_+\|RNA-binding-transcriptional-accessory-protein	unknown	unknown	gnl\|CDD\|225094
NZ_CP011376.1\|WP_080945867.1\|41361_42264_+\|pseudouridylate-synthase	unknown	unknown	gnl\|CDD\|211332
NZ_CP011376.1\|WP_046699067.1\|52786_53983_+\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_CP011376.1\|WP_046695840.1\|51781_52693_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
NZ_CP011376.1\|WP_080945868.1\|48535_49090_+\|type-V-CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|213941
NZ_CP011376.1\|WP_046695835.1\|40899_41214_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
NZ_CP011376.1\|WP_046699068.1\|58254_58989_-\|two-component-system-response-regulator-OmpR	unknown	unknown	gnl\|CDD\|181883
NZ_CP011376.1\|WP_080947458.1\|39073_39577_+\|DUF4442-domain-containing-protein	unknown	unknown	gnl\|CDD\|370533
NZ_CP011376.1\|WP_046695848.1\|64414_64771_+\|succinate-dehydrogenase,-hydrophobic-membrane-anchor-protein	unknown	unknown	gnl\|CDD\|239574
NZ_CP011376.1\|WP_080702176.1\|64025_64415_+\|succinate-dehydrogenase,-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|181900
NZ_CP011376.1\|WP_046695843.1\|55904_57113_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|275200

Protein	Function_ID	Function_description	E-value
NZ_CP011376.1\|WP_046695844.1\|57109_58201_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|275201	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG. Members of this family are LptG, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptF (TIGR04407). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	2.4888e-88
NZ_CP011376.1\|WP_046695847.1\|61824_63099_-\|citrate-(Si)-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP011376.1\|WP_046695842.1\|54129_55632_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP011376.1\|WP_046695836.1\|42380_42881_+\|putative-4-hydroxy-4-methyl-2-oxoglutarate-aldolase	gnl\|CDD\|236487	PRK09372, PRK09372, ribonuclease E inhibitor RraA.	2.64846e-87
NZ_CP011376.1\|WP_046699066.1\|44703_48489_+\|type-V-CRISPR-associated-protein-Cas12a/Cpf1	gnl\|CDD\|275131	TIGR04330, conserved_hypothetical_protein, CRISPR-associated protein Cpf1, subtype PREFRAN. This family is the long protein of a novel CRISPR subtype, PREFRAN, which is most common in Prevotella and Francisella, although widely distributed. The PREFRAN type has Cas1, Cas2, and Cas4, but lacks the helicase Cas3 and endonuclease Cas3-HD.	0
NZ_CP011376.1\|WP_080945869.1\|49103_50132_+\|type-V-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|213942	TIGR04329, hypothetical_protein_SbacW_07302_partial, CRISPR-associated endonuclease Cas1, subtype PREFRAN. Members of this family are the Cas1 endonuclease of a novel CRISPR subtype, PREFRAN, found in Prevotella bryantii B14, Prevotella disiens FB035-09AN, Francisella tularensis subsp. novicida, Francisella philomiragia, Butyrivibrio proteoclasticus B316, Helcococcus kunzii ATCC 51366, etc.	4.68174e-108
NZ_CP011376.1\|WP_046695839.1\|50128_50398_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.09985e-14
NZ_CP011376.1\|WP_046695837.1\|43157_44369_+\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
NZ_CP011376.1\|WP_046699065.1\|39796_40786_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	1.22807e-164
NZ_CP011376.1\|WP_046695846.1\|59264_61652_+\|RNA-binding-transcriptional-accessory-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NZ_CP011376.1\|WP_080945867.1\|41361_42264_+\|pseudouridylate-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	1.55812e-112
NZ_CP011376.1\|WP_046699067.1\|52786_53983_+\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP011376.1\|WP_046695840.1\|51781_52693_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.17737e-62
NZ_CP011376.1\|WP_080945868.1\|48535_49090_+\|type-V-CRISPR-associated-protein-Cas4	gnl\|CDD\|213941	TIGR04328, hypothetical_protein_HMPREF9709_01098, CRISPR-associated protein Cas4, subtype PREFRAN. Members of this family are the Cas4 protein of a novel CRISPR subtype, PREFRAN, found in Prevotella bryantii B14, Prevotella disiens FB035-09AN, Francisella tularensis subsp. novicida, Francisella philomiragia, Butyrivibrio proteoclasticus B316, Helcococcus kunzii ATCC 51366, etc.	9.25579e-70
NZ_CP011376.1\|WP_046695835.1\|40899_41214_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	3.91964e-13
NZ_CP011376.1\|WP_046699068.1\|58254_58989_-\|two-component-system-response-regulator-OmpR	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	1.10562e-162
NZ_CP011376.1\|WP_080947458.1\|39073_39577_+\|DUF4442-domain-containing-protein	gnl\|CDD\|370533	pfam09500, YiiD_C, Putative thioesterase (yiiD_Cterm). This entry consists of a broadly distributed uncharacterized domain often found as a standalone protein. The member from Shewanella oneidensis is described from crystallography work as a putative thioesterase because it belongs to the HotDog clan of enzymes. About half of the members of this family are fused to an Acetyltransf_1 domain pfam00583.	7.05668e-36
NZ_CP011376.1\|WP_046695848.1\|64414_64771_+\|succinate-dehydrogenase,-hydrophobic-membrane-anchor-protein	gnl\|CDD\|239574	cd03494, SQR_TypeC_SdhD, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. E. coli SQR, a member of this subfamily, reduces the high potential quinine, ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. SdhD and SdhC are the two transmembrane proteins of bacterial SQRs. They contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	2.52414e-31
NZ_CP011376.1\|WP_080702176.1\|64025_64415_+\|succinate-dehydrogenase,-cytochrome-b556-subunit	gnl\|CDD\|181900	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit.	1.42495e-26
NZ_CP011376.1\|WP_046695843.1\|55904_57113_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|275200	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF. Members of this family are LptF, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptG (TIGR04408). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	1.65192e-80

>NZ_CP011376.1|WP_046695839.1|50128_50398_+|CRISPR-associated-endonuclease-Cas2
MIIVSYDISDNKVRGRFAKFLMQYGDRLQYSVYEIQNSERILNIITEKIKAEFEPLFAGADSVIIFRFTEREVLRFGHAKHRNEDLLIL
>NZ_CP011376.1|WP_080945869.1|49103_50132_+|type-V-CRISPR-associated-endonuclease-Cas1
MLSISDIKEKQMILLNNLEGGYHLCISQGNIIIKNKDSDETLTKITRHKAMALMIIGYCTLTNVLIEFCQKYGIALILLNSRLRPILFVSSFGEANYLLRQKQYAIGDNQALNFAKHFIEQKANNSITLLKGIRKKDDELRQMIETLADYQRQIDQTKRLDELMGIEGNIAKSYFKYHFGQLKHTSWQGRKPRLKIDSVNVVLDMGYTLLFNYIEINLRLFGFDVYKGMLHQLWYKRKSLVCDLVEPFRCIVDKQVLTSFNLGQFKTEHFNQIKMQYQLKTEHQRIYNAILMQAIIAHKVPIFVYVRDFYRAYMKYADKDMAFDELVLMLPSFDIQANGEDV
>NZ_CP011376.1|WP_080945868.1|48535_49090_+|type-V-CRISPR-associated-protein-Cas4
MEYHTLNISQLNDFIFCPYSIYLNNVYQALDDDTYHDTPQVKGKIAHEGVDNGTYSTKKTVITAMAVHSDKYGLTGKIDQYFADSKKLIERKRTIKTIYDGYKLQLYAQYFCLVEMGFEVDYLGFYSMTDNKSHALALPDDEIIDWFENYLYKIRHYNPMTDDIYINTNKCTHCIYQPLCDKTD
>NZ_CP011376.1|WP_046699066.1|44703_48489_+|type-V-CRISPR-associated-protein-Cas12a/Cpf1
MLFQDFTHLYPLSKTVRFELKPIGKTLEHIHAKNFLNQDETMADMYQKVKAILDDYHRDFIADMMGEVKLTKLAEFYDVYLKFRKNPKDDGLQKQLKDLQAVLRKEIVKPIGNGGKYKAGYDRLFGAKLFKDGKELGDLAKFVIAQEGESSPKLAHLAHFEKFSTYFTGFHDNRKNMYSDEDKHTAIAYRLIHENLPRFIDNLQILATIKQKHSALYDQIINELTASGLDVSLASHLDGYHKLLTQEGITAYNTLLGGISGEAGSRKIQGINELINSHHNQHCHKSERIAKLRPLHKQILSDGMGVSFLPSKFADDSEVCQAVNEFYRHYADVFAKVQSLFDGFDDYQKDGIYVEYKNLNELSKQAFGDFALLGRVLDGYYVDVVNPEFNERFAKAKTDNAKAKLTKEKDKFIKGVHSLASLEQAIEHYTARHDDESVQAGKLGQYFKHGLAGVDNPIQKIHNNHSTIKGFLERERPAGERALPKIKSDKSPEIRQLKELLDNALNVAHFAKLLTTKTTLHNQDGNFYGEFGALYDELAKIATLYNKVRDYLSQKPFSTEKYKLNFGNPTLLNGWDLNKEKDNFGVILQKDGCYYLALLDKAHKKVFDNAPNTGKSVYQKMIYKLLPGPNKMLPKVFFAKSNLDYYNPSAELLDKYAQGTHKKGDNFNLKDCHALIDFFKAGINKHPEWQHFGFKFSPTSSYQDLSDFYREVEPQGYQVKFVDINADYINELVEQGQLYLFQIYNKDFSPKAHGKPNLHTLYFKALFSEDNLVNPIYKLNGEAEIFYRKASLDMNETTIHRAGEVLENKNPDNPKKRQFVYDIIKDKRYTQDKFMLHVPITMNFGVQGMTIKEFNKKVNQSIQQYDEVNVIGIDRGERHLLYLTVINSKGEILEQRSLNDITTASANGTQMTTPYHKILDKREIERLNARVGWGEIETIKELKSGYLSHVVHQISQLMLKYNAIVVLEDLNFGFKRGCFKVEKQIYQNFENALIKKLNHLVLKDKADDEIGSYKNALQLTNNFTDLKSIGKQTGFLFYVPAWNTSKIDPETGFVDLLKPRYENIAQSQAFFGKFDKICYNADRGYFEFHIDYAKFNDKAKNSRQIWKICSHGDKRYVYDKTANQNKGATIGVNVNDELKSLFTRYHINDKQPNLVMDICQNNDKEFHKSLMYLLKTLLALRYSNASSDEDFILSPVANDEGVFFNSALADDTQPQNADANGAYHIALKGLWLLNELKNSDDLNKVKLAIDNQTWLNFAQNR
>NZ_CP011376.1|WP_046695837.1|43157_44369_+|serine/threonine-transporter-SstT
MRSLVNAYLKAGLVPMIIAALILGAIVGALLPSVGISVGILGAIFVGALKAVAPILVFVLVIAAVTSYRGGGDLRIKPVFILYLFGTFTAALTAVVASFTFPTELVLVAAENIEQTPPQDLKEVLTTLLMNLVANPVKSLAEANYMGILTWAVLIGLALRHVSETTRQVATDLSAAITNVVKWVIAFAPIGIFGLVAATVAETGLDALLGYGHLLMVLVGCMLFIALVVNPIIVLAVTRENPYPLVLACLRESGVTAFFTRSSAANIPVNMNLARKLGLNEETYSVTIPLGATINMAGAAITINVLTLAAAHTLGLDVSFGSALLLAIIGSLAACGASGVAGGSLLLIPMACSLFSIPNDIAMQVVAIGFIIGVVQDSAETALNSSTDVLFTAAVDPKYAYKG
>NZ_CP011376.1|WP_046695836.1|42380_42881_+|putative-4-hydroxy-4-methyl-2-oxoglutarate-aldolase
MSEFVTCDLLDDNADKDIQVVSPSMDGKFFRSFGGKKAFGGQAVTVKCFEDNSRVKELLATDGAGKVLVVDGGASMRCALLGDMIAESAVKYDWAGVIVYGCVRDVDALTELDLGVHALGCIPQKSTRKGIGETGVTLNFGGVSIKDGAYVYADNNGILVSDAALI
>NZ_CP011376.1|WP_080945867.1|41361_42264_+|pseudouridylate-synthase
MSDFVPPMIAGVSPSTIYLEKLVSPPVDLFTFLCQKFPHVGIPEWRRRFDDGLVFWEDGETTTIDAPYVHGRSVYYYRFLEDEVVVPFAHEVLYENDRFMVVDKPHFLAVTPGGEYVRQTLLTRLKQQTNNPDLSPIHRLDRETAGLILISKDVKTRGIYQSLFSDNAIHKIYHAIAPCNADMVFPMDVHLHLTRGEPFYTMRVDVNTPPNSHTLIHQLETQGDWAKYELHPTTGKLHQLRVHLNHLGMPIKNDPYYPQVKHKARGEFDAPLQLLAKSLSFIDPVTGEQIDFHSRRKLDF
>NZ_CP011376.1|WP_046695835.1|40899_41214_-|helix-turn-helix-transcriptional-regulator
MKSTEIFKVLGNDSRYQILLWLKDPATHFGTDALRCAETGFDGGICVGMIADKSGLAQSVISSYLASLQNAGLIESKRLGKWTYYRYRAQGVRDFIHQITHELN
>NZ_CP011376.1|WP_046699065.1|39796_40786_-|LLM-class-flavin-dependent-oxidoreductase
MTDVSILSLAPFRDGETFTDAVDDLVDLAQRAEKLGYSRYWIAEHHNTPYLASSATSLLIQRVLDKTNTIRVGSGGVMLPNHSPFIVAEQYGTLASLYPNRIDLGLGRAPGTDPQTARAIRRHQDDFAMNFPSDIKELQFYFGDDDQGKKVRAYPAKGLHVPLYILGSSTESAYLAAELGLPYAFASHFAPRFLTQAVDIYRNYFKPSAVLDAPQVIAGINAIIADSDDEAELLSTTSLQFFLNVVTGDRSGMKPPVADIERHVPPHILNMAKSMMACSIIGSPATAKEQIEELQSRIRADELMAVSYIHDKAKQKYSYELFADVVRSL
>NZ_CP011376.1|WP_080947458.1|39073_39577_+|DUF4442-domain-containing-protein
MLTTFPMGYATISTTINIRLIMKPLSYFLDRIPAASSLDIRVLEHDASCVRLLLPYQGNTNHHQTMFGGSLSLATTLAGWAILYENVPKVDGNIVIKSSQMRYLAPAPSDVEVVAELDDMDCQSVKEAFERFGRARVNVVCRLYCDQKDVGHFSGIYVAIKPNDTHQ
>NZ_CP011376.1|WP_046695840.1|51781_52693_+|LysR-family-transcriptional-regulator
MSTTLRQLRAFVLVAEQNSFTKAAETLCLTQSALSGLIKELEQNLDVKLFDRTTRKLHLSDAGMRLLPQARRVLNEMSVLNEKVSNLKSLHQGHIRLAVSQQLSASTMPKFIAKFCELHPHIQVTLTDCSVDDVVEHIENLEADLGVAPERVHSDDLKTDTLFRSPFYLVLPSTHPFAKKDVVRWADLLNERLITLNGPFIKSLQNELPANISNRIFHPDFEINFLSTALGMVRMGLGVTVCLLYAAEWVEQNGLVMRPIAEPVVERNFLLYTHKNRSLSPAAAAFKEFLIENAHEFLVSNPK
>NZ_CP011376.1|WP_046699067.1|52786_53983_+|aspartate/tyrosine/aromatic-aminotransferase
MFNHVEHYAGDPILGLMDKFANDPRTDIKVNLGVGVYYTEDGKLPVLECVKTAEAQIANPPRPRGYLPMDGLAGYKKACQDLLFGKDSQIVKDGRVATIATLGGSGALKVGADFIHEWFLNAKCYVSNPTWANHIGIFEGAGIEVAKYPYYDAQTIGVKFDEMCEFFKGLNENDVVLLHPCCHNPTGVDLTNDQWDVVLDIVKDKKLIAFMDIAYQGFGEDMEGDVYAIRRAVDMGLPIFVSNSFSKNLSLYGERVGGLSVVAPSKEEADRVQGQLKFTVRRIYSSPPSHGNNVVDIVMNDEALFEQWVGEVYEMRDRIREMRQKLQDTLTAKLPERDFSYFTKQRGMFSFTGLTAEQVVRLRDEFAVYMVENGRMCIAGLNNKNVEYVANAMAEVLK
>NZ_CP011376.1|WP_046695842.1|54129_55632_-|leucyl-aminopeptidase
MSIQLSVHSELTLKKATKSNPLPQLVFFADNEGKLLGNIQSEHTARAENLIKKSGFKGELCDVVSDYALSDDGVGITIIGAGKLDKLAKNIQKLGAATYKTIKNHKSAAIVWGDVICQKHFSQFALSLLAASYRFDRYFAKKADADKLAVLSFINNKDSQDDYQAALDLTKATFAGQSFARDLANEAPNNLNPVALAKEAKKLAKEYGDKVKVTILGEKEMTKLGMGCFMSVSQGSDAEGQLVVIEYYGKNKKGSKKAKLDNPIALVGKGITFDTGGISLKPGAGMDEMKFDMGGAAAMLGTTKAVCEAGLEIDLVTVLACAENMPSGKATRPGDIVTAMDGTSVEILNTDAEGRLVLCDALCYVQDNYKPRTIVDAATLTGACVIALGSVRSAVYSNDEDTLFALESAGEHTGDLLWQMPLDDEYASQLKSNFADLQNIGGREGGSITAACFLQHFIKEGQAWAHLDIAGTASLSGASKGATGRPVPMLVQFLKSQENQ
>NZ_CP011376.1|WP_046695843.1|55904_57113_+|LPS-export-ABC-transporter-permease-LptF
MIREVAMTTALVLGFLVVMLLGGRLIRYFGMAAEGGLDVGVLFTLIGYNLPYFLELIFPLSFFIGLMLVFGRLYADHEMVVLNASGISRGRVSRLIIPLVLVAFLAQGFITLVAKPWGVAKAANIWQEQSVLKIFDIITPRKFISSGEYHLYVGEIGENREYLQDVIVIQMAKNPDLRNAASMSDIAHQDDQADNAQKAQEIATRIPQELISEKDTIIFAKSATQVDSDDGVIRLDLHQGRRYEVDATSKKYSQIGFERYRISLAASSNEDLKPLKIEGWRTQDLFANMNTPNQTPSSQEIHAELGYRFSLPWLILIAAILAAPLAQVKPRQGRWLKLIPALFIFVANVLILISLKESIAKGKVGDWAYPVVLAVLFAVAIYINYHERMMAKLRLNRQGGAA
>NZ_CP011376.1|WP_046695844.1|57109_58201_+|LPS-export-ABC-transporter-permease-LptG
MKSHILAKYVIRAAFLAMLGAVLGLWLLQLIFAYLNELEGLSDTYMVMDALKFILYRSPYFLVQFIPTGALLGAVVGLGLLAGNSELVSMQASGVSKYRIISWAMIPASVFVVLSLAVNQYVLPITNQKAEAINTRTPETKLVSVNGYWSVNEHDGGQDIVHISYADSDGVLGETKRYTLDQSSNLTGAMRASSGVYDAKSSDDRYSWQLSDIDVVNINASGVSRTHENAKILTLPIAPTDVHLLTREPEDMSLTDLYAHGQLMNHQGSSSARHELKFWQKLLSPFAVLSLVLVASSFVFGSLRSQGLGLRIVLALLIGLLFSYLTDLTGFIALAANWSPFVMALLPIIISALAGVYLLQKRQ
>NZ_CP011376.1|WP_046699068.1|58254_58989_-|two-component-system-response-regulator-OmpR
MTETNENIAHRILVVDDDVRLRTLLQRFLEDDGFVVRVAHDGKQMDKLIAREIFSLIVLDLMLPDEDGISVCKRLRTENSDIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQNRELPGAPSQQMEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKLMNLARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVFVPDGAES
>NZ_CP011376.1|WP_046695846.1|59264_61652_+|RNA-binding-transcriptional-accessory-protein
MTDIVQTPIDHAAIYDKLAKEHGVKPSQVAAFAELFDEGASVPFIARYRKEQTGGLDDALLRALEKGLVLQRDLAARRIKIIELLTAQNALTDELVTRIEAANTKLELEEIYQPYRPRRRSVAARARLAGLEPIAQDILVGAAPSEALAGFSCPETLTDETGETFEADFKDFDKQLAGVQAIILDTWAQSLDLLDEVRLGFNKTASIRSELVGEEKREAGEKFKDYFEHSEPFAKLSNHRLLAMLRGRQQNVLVLHVDGEDEPFVQKIKSHFGVDQSAVNGEFLADTADKLWHAKWRSQIEHRLLTERRVAAETDAIGVFAENLKHLLMTAPAGRKVILGVDPGIRHGVKMAVIDATGDVLATDTAYPFEPYNKVDEARKMIAGLIRSHGVELVAIGNGTASRESESLVKSIIDDEKLSVKALVISEAGASVYSASEIASNELPDLDVSVRGAVSIARRLQDPLSELVKVEPKAIGVGQYQHDVNQTELESSLDKVTEDCVNAVGVDVNTASPAILAHIAGLNKNVAQQIVDYRRTNGAFKNREELKAVPRLGVKTFEQAAGFLRIKDGTEPLDATGVHPESYGLVYEILRKADKTLTDVLGNEAVAKSLNDSADNFSQLATVVAELAKPAHDPRGEFKTAKFRDDVNSIKDLTVGMVLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVDNPAAVVKPQDIVSVRVISVDEARGRIGFSMKSEAAKADKKADKPKEKEDRKPRTSDKKADKTKDQRSERRRSDKSDKPKAQDNKVGSLGALLKQAGLQLIR
>NZ_CP011376.1|WP_046695847.1|61824_63099_-|citrate-(Si)-synthase
MSNVKLVIDGTEYEMPVLESTLGRPVLDVSAVAKAGFWTYDPGFMATAPVESALTYIDGDKGELLHRGYAIDDLADNADYLEVCYALLYGDLPTTEQKEKFYARINDHMAVHDQLRKFFEGFRRDAHPMAIMIGVVGALSAFYHNHLDISDAAHRDDTAVDLIAKVPTLAAMSYKYSIGEPFLYPRKDFSYAENFLYMMFATPGDVDYKPNPVLVKAMDKIFTLHADHEQNASTSTVRLAGSTGANPYACIASGIAALWGPSHGGANEAVLTMLDEIGSIENVAPFMEKVKTKEAKLMGFGHRVYKNFDPRAKVMKETCDEVLGALGVNDPKLQLAMELEKIALSDQYFIDRKLYPNVDFYSGIILKAIGIPTSMFTVIFALARTAGWIAHWTEMHSEAFKIGRPRQRYIGEKHREFVKIEDRK
>NZ_CP011376.1|WP_080702176.1|64025_64415_+|succinate-dehydrogenase,-cytochrome-b556-subunit
MPAVKSNRPINLPLSQVIAVNSKSPIAMASILHRVSGIVLFLLVPVMLCILQTSLSSPEGFASVFDNVLLRFVAWIFVAATAYHFVMGIKHLLADLGMNEEFKSGKTAAVISFVIAAILIVASFVWVMF
>NZ_CP011376.1|WP_046695848.1|64414_64771_+|succinate-dehydrogenase,-hydrophobic-membrane-anchor-protein
MARNNSGVKSATGLTGSGSRDWILQRISAVVLAVYAVVVIGFFLFNQVDYNAWHGFMMSLPMKLFSLVAILSLVFHAWVGMWTVFTDYVKSSGLRIVLQAAVIIAVLVYLFWGVMIFW

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Crispr_ID: NZ_CP011376_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011376_2

1645997-1646076

Orphan

Consensus_repeat	Method
CAACCAGTACCAAAAACGGAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011376_2

>merge|NZ_CP011376|2|1645997-1646076|CRISPRCasFinder
CAACCAGTACCAAAAACGGAACTAGTACCAAAAACGGAACCAGTACCAATTTTTCCAGAACCAGTACCAAAAACGGTACG

>NZ_CP011376|2|2|1645997-1646076|CRISPRCasFinder
CAACCAGTACCAAAAACGGAACT	AGTACCAAAAACGGAACCAGTACCAATTTTTCCA
GAACCAGTACCAAAAACGGTACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011376.1\|WP_080946061.1\|1654793_1655084_-\|phage-tail-assembly-protein	unknown	unknown	gnl\|CDD\|378397
NZ_CP011376.1\|WP_046699320.1\|1640647_1641226_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376179
NZ_CP011376.1\|WP_080946058.1\|1649013_1650249_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222877
NZ_CP011376.1\|WP_155400190.1\|1643390_1643828_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011376.1\|WP_046699322.1\|1642629_1643400_-\|DUF1829-domain-containing-protein	unknown	unknown	gnl\|CDD\|370160
NZ_CP011376.1\|WP_046699329.1\|1650768_1654446_-\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|273790
NZ_CP011376.1\|WP_046699323.1\|1643827_1644571_-\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|119397
NZ_CP011376.1\|WP_155400191.1\|1641225_1641399_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011376.1\|WP_046699325.1\|1645092_1645314_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379462
NZ_CP011376.1\|WP_080946059.1\|1650251_1650758_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377754
NZ_CP011376.1\|WP_080946057.1\|1648724_1648961_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368019
NZ_CP011376.1\|WP_046699324.1\|1644847_1645096_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011376.1\|WP_080946060.1\|1654671_1654863_-\|GpE-family-phage-tail-protein	unknown	unknown	gnl\|CDD\|368955
NZ_CP011376.1\|WP_046699321.1\|1641656_1642571_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP011376.1\|WP_046699327.1\|1646668_1647184_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011376.1\|WP_080946056.1\|1647468_1648194_+\|Bro-N-domain-containing-protein	unknown	unknown	gnl\|CDD\|214989
NZ_CP011376.1\|WP_046699330.1\|1655322_1655838_-\|phage-major-tail-tube-protein	unknown	unknown	gnl\|CDD\|164995
NZ_CP011376.1\|WP_046699328.1\|1648219_1648477_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011376.1\|WP_080946054.1\|1644677_1644851_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373126
NZ_CP011376.1\|WP_046699326.1\|1645366_1645720_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011376.1\|WP_080946061.1\|1654793_1655084_-\|phage-tail-assembly-protein	gnl\|CDD\|378397	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14. This is family of various Myoviridae bacteriophage tail assembly chaperone, or TAC, proteins.	1.51321e-06
NZ_CP011376.1\|WP_046699325.1\|1645092_1645314_+\|hypothetical-protein	gnl\|CDD\|379462	pfam14090, HTH_39, Helix-turn-helix domain. This helix-turn-helix domain is often found in phage proteins and is likely to be DNA-binding.	4.76254e-10
NZ_CP011376.1\|WP_046699330.1\|1655322_1655838_-\|phage-major-tail-tube-protein	gnl\|CDD\|164995	PHA02600, FII, major tail tube protein; Provisional.	1.80642e-84
NZ_CP011376.1\|WP_046699329.1\|1650768_1654446_-\|phage-tail-tape-measure-protein	gnl\|CDD\|273790	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions].	6.2267e-40
NZ_CP011376.1\|WP_080946058.1\|1649013_1650249_-\|hypothetical-protein	gnl\|CDD\|222877	PHA02561, D, tail protein; Provisional.	2.01674e-107
NZ_CP011376.1\|WP_046699322.1\|1642629_1643400_-\|DUF1829-domain-containing-protein	gnl\|CDD\|370160	pfam08862, DUF1829, Domain of unknown function DUF1829. This short domain is usually associated with pfam08861.	2.72569e-32
NZ_CP011376.1\|WP_046699320.1\|1640647_1641226_-\|hypothetical-protein	gnl\|CDD\|376179	pfam18757, Nmad5, Nucleotide modification associated domain 5. An alpha+beta fold domain associated with DNA base modifying genes in prokaryotes, and likely to be involved in modified DNA base biosynthesis.	2.96259e-14
NZ_CP011376.1\|WP_080946059.1\|1650251_1650758_-\|phage-tail-protein	gnl\|CDD\|377754	pfam06995, Phage_P2_GpU, Phage P2 GpU. This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein, which is thought to be involved in tail assembly.	6.15092e-45
NZ_CP011376.1\|WP_080946057.1\|1648724_1648961_-\|hypothetical-protein	gnl\|CDD\|368019	pfam04606, Ogr_Delta, Ogr/Delta-like zinc finger. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F. This family also includes zinc fingers in recombinase proteins.	2.1013e-05
NZ_CP011376.1\|WP_080946060.1\|1654671_1654863_-\|GpE-family-phage-tail-protein	gnl\|CDD\|368955	pfam06528, Phage_P2_GpE, Phage P2 GpE. This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.	8.57966e-06
NZ_CP011376.1\|WP_046699321.1\|1641656_1642571_+\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	7.76578e-05
NZ_CP011376.1\|WP_046699323.1\|1643827_1644571_-\|LexA-family-transcriptional-regulator	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	1.62625e-17
NZ_CP011376.1\|WP_080946056.1\|1647468_1648194_+\|Bro-N-domain-containing-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	6.53663e-17
NZ_CP011376.1\|WP_080946054.1\|1644677_1644851_+\|hypothetical-protein	gnl\|CDD\|373126	pfam14549, P22_Cro, DNA-binding transcriptional regulator Cro. Bacteriophage P22 Cro protein represses genes normally expressed in early phage development and is necessary for the late stage of lytic growth. It does this by binding to the OL and OR operator-regions normally used by the repressor protein for lysogenic maintenance.	5.97898e-09

>NZ_CP011376.1|WP_046699326.1|1645366_1645720_+|hypothetical-protein
MADNPERVQIIPERPPQPRKPHKVISPYLMGYDVLPRSTETNRRISPTKAKREAWLAHMRTTGAVMTDLQVCDSFKIKCPLAVAKGINNKKPGTITITTRMINGKSRRVYHIGSIRS
>NZ_CP011376.1|WP_046699325.1|1645092_1645314_+|hypothetical-protein
MNDLTGQCATLLEHLRTAPITHIQAVQTYHIMGFLARISELRQMGHPIRFRWEKSANGARYKVYYLEQSNVSV
>NZ_CP011376.1|WP_046699324.1|1644847_1645096_+|hypothetical-protein
MKPKKTHQITVHLSEECHTVIGRLADECNLSKSEWLCRLIEDDLRERYHRAHHAMQVLSLLENDEIVASPENRTNSDRDYPL
>NZ_CP011376.1|WP_080946054.1|1644677_1644851_+|hypothetical-protein
MTKKEALKIAKGSVNELGRLLGISHAAVSQWNDDKIPELRAYQIREIMARQQAQARP
>NZ_CP011376.1|WP_046699323.1|1643827_1644571_-|LexA-family-transcriptional-regulator
MSTFAERLYKLRKEKRLARDALGAKIGVSKTAIKNWEDGENMPKVEHVQALAKYFGVSFDWLATGGQTTKLVEPIRQKLDIDIIKELKDKIAAIENRKVAHSEELEPSNALSINNPVPVIEWVAAGSWSEANAVMAYDAFDYLPRPFNFPENGFALKVRGVSMMPKFEPGDFIYVDPNCTFWELKNGDLVVVREGENSEATFKQLVLGETSSDMYLKPLNPDWHEQKMTPKSEWELVGKVVGKWVVF
>NZ_CP011376.1|WP_155400190.1|1643390_1643828_-|hypothetical-protein
MMTDEQAQAFIDVLKTIVGKPINFDFTKKVIELRDGGGREEYLLDIIPNRIMPNKISTTLRVRKNVLLVRLDVNGPPHRNPDDTEVPCPHLHVYKQGYGLKWAYPVPPIFGDCINLANYLDSFCEYCNIHGRIFTQIPIEFCPCS
>NZ_CP011376.1|WP_046699322.1|1642629_1643400_-|DUF1829-domain-containing-protein
MFINDIQRYHDSYLAWLKDKTCLKNMGNDVVEITTPHLDRHNDYLQFYVKKTEDGLLFTDGGYVLDDLEVSGVVFNTPKRTALLQQTLNGFGVQVCDGCLTTKADANNFPVRKNNFIQAMLAVGDMFSLSSSNIANFFFEDVEYWLDEIGVRYSQNINLIGKSGFGFNFDFVIPHSKSQPERLLHTLNNPTKSNVEHILFGWSDTKETRRTDTALYVMLNDVDNHISDSSVQSLINYNINPIRWTDRNQVISELIH
>NZ_CP011376.1|WP_046699321.1|1641656_1642571_+|hypothetical-protein
MATFFATVILLLPILLVWWLISPIHYPFTQNLSRPKIILHGILALLVLLIILAITAPPADQSTPEASDIIGLLLAMVALATLITKSIKTKKSRISVQAETKPVIIQDPRELQKEAEKSQPNEAKDYQARIEEEAKIRATQDAQFQAQQEELKQALASLQEELRATKTELSQTQDKLTEKNSALEEVLQSTKELLESQQHEQQSTKPEPKKIQKPAPNHDLVLGDDSVCIMVYTGSDGKTSSRPIIPRELKINKNGDWVISAVDIDASRVKSFRVDRISHLSHNGQEFTHQDDILSTLRAIEITL
>NZ_CP011376.1|WP_155400191.1|1641225_1641399_-|hypothetical-protein
MPTIKQTCLSTFIIALAFISLKGCVSMSLAAWDRAYEGERAKIAEYRALADNKEENY
>NZ_CP011376.1|WP_046699320.1|1640647_1641226_-|hypothetical-protein
MTRITKYTRELMLDELIKNGKFAENIQAKEQALKQAGHEIYLKIFGKYLDDIKKLPELLFNRTREIRLDGIESPNSSFMLRVELPDYHVCLAFGTVIGKNFHGLTKDDEIIKKYLAAEQAYDDEFSKMKQARRDAEVMLSGINTFKQLWKLWPESQSLLGKFENQDKPNYPLVPQNIVNINAAFGLPVENNL
>NZ_CP011376.1|WP_046699327.1|1646668_1647184_+|hypothetical-protein
MWFGAKVSDNTRYSTAAMIEWADYFARHNADIDELRQAFRLCQNLDFPPNNAADYLRLVRKNRHIDSHQAMHTAITIASQIQAGNAVRWDNAAIYETALRIGFYTLCNESSYLLTPRWDKAYKAVCDEMDAGATFALPTLPALEHKSIPAPKDIADKALSSIRQKLGLAKC
>NZ_CP011376.1|WP_080946056.1|1647468_1648194_+|Bro-N-domain-containing-protein
MKALSFNGVSLTPVHHNSQIYLTSTELAKALGYADAKSITNLYNTNADEFSADMTEVIESMTSKNLKRSLRIFSLRGCHLIAMFARTSVAKEFRQWVLDILDKQVGEPVVYVCKSTLTTPDDRRPLVNAVRMLQERTQISYEYAYKMVNQYMGTTHIGQIPLSELPKAVAYVHDLVFRARATANPAQDIIDDAAQQNRKAQQELGNTMVRFGQALDHLSQMQEQLIKQEKMIATAKRQLNA
>NZ_CP011376.1|WP_046699328.1|1648219_1648477_+|hypothetical-protein
MRIINQTKSDKQIPKRGQVWQPKDPAHHSVIIADVNTHCVHLQYIDSPELTFQMDRATFLKYYTFLRYHKQIPPPNTLYNEPFFA
>NZ_CP011376.1|WP_080946057.1|1648724_1648961_-|hypothetical-protein
MEVIMAWVCPHCKQKTVRIRTSRDEHILMRRLWVQCQNLSCGWAGTYNCECDGELSPSATPDPQVKLPQGRKPPSISA
>NZ_CP011376.1|WP_080946058.1|1649013_1650249_-|hypothetical-protein
MNPRIESLLAQGKTVLYAGMNIADRLAGEMASMLDRSYPQPVWRLVVNGEDMTDGVSSRLMSLTLTDNRGLEADTLDVTLTDHDGALSIPPKGATLEVYLGWHTSELVYKGMFIASEITHQGSPDTLTIRALSADLKESIKQKKERSFDQTTLGDIIQKIALEHQLTAKIHADLASSDIYHLDQNESDISLLTRLAEEFDAAAMIKDDVLLFMPIYVHETVSGEPLPTMVITRVLGDNHSYTEDADSISGVRAQFYDVTKKDKVPVLVGSDEDSVREIRYVHRDQKSATDAAMATYRRARRETAKLSYTLAHGDPLLIPQMPVMVLGIKDSIDATDWTLTNVVHNLDDGGYTCKIECERLLSAVYEITPPITVGEQKKDKPKSTAAKNPKSKGGKSRRAAKKRQREKSAKK
>NZ_CP011376.1|WP_080946059.1|1650251_1650758_-|phage-tail-protein
MMMIIGMFVFRIPTIVYQSLSHKTEWRHASNSRVGVMPAYQFLGRGENTITLEGSIVPEFGNQKGLVKLSEMADAGKAYPLICGNGRVWGQYVIESIDETHTIFFKHGLARQVDFTIELKQITTPRTLKDNSLRAAGRAALAVATDYGIDTSRVTSSATRYGIDIGQE
>NZ_CP011376.1|WP_046699329.1|1650768_1654446_-|phage-tail-tape-measure-protein
MSVLFLNVNFKGNDQLSSSLEKINSSAKKLESQIGDAKKKISELEKTKLNFNQFEKVKKDTAEAAVKLTAYKKVIKDLKAQMSSGGGDDTVAKRLKNAEKEAAKLQNTVEKGRVRMSNLSRSLEKAGQNSQSFAQSQQHLESQLRKSNESLKKQEERLSRLNKAEQHYVKMKGISDASRDFAGKALKATIATGTALAVPVKFTIDAEKSMADVAKVVDGLKIDGKVTAEYEQFERQMTEMSNRLGMQFSDLSDIIAGGAQGGIKQNELMQFGEHAVKTAIAWGMEAGRVGQAVAELRSTLKLSQDEVATLSDQINYLGNSSTNNAAHILEVVQRVGSVGAAAGVSGDLIAAMGASISGIDPSSVGTGLKNIIKSLTKGDSATKSQRKAWEALGTTAEEMASQMLKDPEKAITRYLEMLGKLPEEQRLAFASMISGDDALPVLAQMMNDPEKFARYAAEVKDGNKINGSVDEEYNSAVSTTAFKIDRAKVKMQNFAKDFGKQLLPFVSSIADAISGIVDKVSAWAAANPELFGYFAKGAAILVGILAGVTALAAAASFVVLPFAWLNFTLAKVTGGALTLGGAFKAMLNPIKSIPVILGLVKSGFMVAAGAVKAFTVGLLTSPIGLIGLALAAGAVVIYKYWKPISAFFKGVWSGISEAFAPIKPMFESIGNFIKPAIDWFKSLFSTTQAGEGNARQLGHAFGVYLVGAFKTLTAPIRAVWSVLEWVWDGISSLLGKPISVGDIFGSLREKWEKLLESLDGYWQKAQALWDKFTGIFKKSPSSAPAQSGEGGDFWSSLISGFGEVSQSIGKKMGSLWDSAGPKLEAAKTRLAAKVGEIWSSVTNVINGSDGGPDIAAAVGNKIQTVINTTSQASTTLSSVFSALINVVSVSATGMISIIGVSLSAIPAIVSAGVVPIPVIFAAALGALPKITAIVFIGMAAAASAGMSALALAINSKMQMAVLATRMGFVRIIQTIASSWRQMGSAMRGNPILSRMQSAIGSVLSYFTGVKGRFLAIGADIVGGLASGMNSRLGELRKTATQIAAVVENAARQRLDTHSPSRVMALVGRDVVAGLDVGMKRRFAPMLKGFRANIGKLASPANIARVSKAISAICRATGSNDVLGDIVAPKLSNNPLVGLALSRLPKVLGQNTPKPVNVTPIQSRPMPLDADGYKGAGGGHASTSNYTIHIHANPGMDERTLAKLVQAELERYEQRKAAKHRARMTD
>NZ_CP011376.1|WP_080946060.1|1654671_1654863_-|GpE-family-phage-tail-protein
MYDLGGRGCWFFGGGEHGYPRRVEDVIANLGVVFGWTLSDCADLSIDELMDYNNLALERHQAQ
>NZ_CP011376.1|WP_080946061.1|1654793_1655084_-|phage-tail-assembly-protein
MMSNTKQITLDKGVKLGENTINDITITKPVVAHLKGISLTKLFNFETDELMKLIPRVTAPSIPQPALSNMDVTEFMTLVGEVVGFLAEENTDTPEE
>NZ_CP011376.1|WP_046699330.1|1655322_1655838_-|phage-major-tail-tube-protein
MALPKKLKMMNLFNEGNSYLGQTGEVTLPKLGRKLENWRGGGMNGSVKVDLGLSDDITEFGWKLGGIDLTVLEQFATPTVSGLGLRFAGSYQQDDTGETTAVEIVVRGRHEEIDLGSAQSGEDTEVTIKTIWSYYKLTVNGKVVIEIDIPNMIENVNGKDMLSEHRKNIGA

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Crispr_ID: NZ_CP011376_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011376_3

1657790-1657945

Orphan

Consensus_repeat	Method
GGTGGTGCGACCATTAACGGCGAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP011376_3

>merge|NZ_CP011376|3|1657790-1657945|CRISPRCasFinder
GGTGGTGTAACCATTAACGCCAAAGCAGGCATCACCATCAATGCTCAAGGTGGTGCGACCATTAACGGCGACACAACCATTAATGGAAATCTATCGGTTAGTAAAGGTATTACAGGCGGCACGTCAGGCGGTGGTGGTGCGACCATTAACGGCACG

>NZ_CP011376|3|3|1657790-1657945|CRISPRCasFinder
GGTGGTGTAACCATTAACGCCAAA	GCAGGCATCACCATCAATGCTCAA
GGTGGTGCGACCATTAACGGCGAC	ACAACCATTAATGGAAATCTATCGGTTAGTAAAGGTATTACAGGCGGCACGTCAGGCGGT
GGTGGTGCGACCATTAACGGCACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011376.1\|WP_046699335.1\|1661366_1661978_+\|DUF4376-domain-containing-protein	unknown	unknown	gnl\|CDD\|373004
NZ_CP011376.1\|WP_046699333.1\|1658043_1658379_+\|baseplate-assembly-protein	unknown	unknown	gnl\|CDD\|134016
NZ_CP011376.1\|WP_046699331.1\|1656073_1657240_-\|phage-tail-sheath-protein	unknown	unknown	gnl\|CDD\|164955
NZ_CP011376.1\|WP_046699330.1\|1655322_1655838_-\|phage-major-tail-tube-protein	unknown	unknown	gnl\|CDD\|164995
NZ_CP011376.1\|WP_046699338.1\|1664038_1664569_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|369126
NZ_CP011376.1\|WP_046699329.1\|1650768_1654446_-\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|273790
NZ_CP011376.1\|WP_046699328.1\|1648219_1648477_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011376.1\|WP_080946057.1\|1648724_1648961_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368019
NZ_CP011376.1\|WP_080946059.1\|1650251_1650758_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377754
NZ_CP011376.1\|WP_080946064.1\|1662412_1662709_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368287
NZ_CP011376.1\|WP_046699334.1\|1658387_1659281_+\|baseplate-assembly-protein	unknown	unknown	gnl\|CDD\|164963
NZ_CP011376.1\|WP_080946063.1\|1659819_1661367_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|372197
NZ_CP011376.1\|WP_080946060.1\|1654671_1654863_-\|GpE-family-phage-tail-protein	unknown	unknown	gnl\|CDD\|368955
NZ_CP011376.1\|WP_080946056.1\|1647468_1648194_+\|Bro-N-domain-containing-protein	unknown	unknown	gnl\|CDD\|214989
NZ_CP011376.1\|WP_080946065.1\|1662705_1663038_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011376.1\|WP_080946061.1\|1654793_1655084_-\|phage-tail-assembly-protein	unknown	unknown	gnl\|CDD\|378397
NZ_CP011376.1\|WP_046699336.1\|1663047_1663527_+\|peptidase-M15	unknown	unknown	gnl\|CDD\|311960
NZ_CP011376.1\|WP_080946058.1\|1649013_1650249_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222877
NZ_CP011376.1\|WP_080946062.1\|1659277_1659823_+\|phage-tail-protein-I	unknown	unknown	gnl\|CDD\|226820
NZ_CP011376.1\|WP_046699337.1\|1663583_1664042_-\|phage-virion-morphogenesis-protein	unknown	unknown	gnl\|CDD\|368274

Protein	Function_ID	Function_description	E-value
NZ_CP011376.1\|WP_046699335.1\|1661366_1661978_+\|DUF4376-domain-containing-protein	gnl\|CDD\|373004	pfam14301, DUF4376, Domain of unknown function (DUF4376). This domain family is found in bacteria and viruses, and is approximately 110 amino acids in length.	1.58198e-11
NZ_CP011376.1\|WP_046699333.1\|1658043_1658379_+\|baseplate-assembly-protein	gnl\|CDD\|134016	PHA02516, W, baseplate wedge subunit; Provisional.	9.99355e-31
NZ_CP011376.1\|WP_046699331.1\|1656073_1657240_-\|phage-tail-sheath-protein	gnl\|CDD\|164955	PHA02560, FI, major tail sheath protein; Provisional.	0
NZ_CP011376.1\|WP_046699330.1\|1655322_1655838_-\|phage-major-tail-tube-protein	gnl\|CDD\|164995	PHA02600, FII, major tail tube protein; Provisional.	1.80642e-84
NZ_CP011376.1\|WP_046699338.1\|1664038_1664569_-\|phage-tail-protein	gnl\|CDD\|369126	pfam06891, P2_Phage_GpR, P2 phage tail completion protein R (GpR). This family consists of P2 phage tail completion protein R (GpR) like sequences. GpR is thought to be a tail completion protein which is essential for stable head joining.	1.80033e-48
NZ_CP011376.1\|WP_046699329.1\|1650768_1654446_-\|phage-tail-tape-measure-protein	gnl\|CDD\|273790	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions].	6.2267e-40
NZ_CP011376.1\|WP_080946057.1\|1648724_1648961_-\|hypothetical-protein	gnl\|CDD\|368019	pfam04606, Ogr_Delta, Ogr/Delta-like zinc finger. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F. This family also includes zinc fingers in recombinase proteins.	2.1013e-05
NZ_CP011376.1\|WP_080946059.1\|1650251_1650758_-\|phage-tail-protein	gnl\|CDD\|377754	pfam06995, Phage_P2_GpU, Phage P2 GpU. This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein, which is thought to be involved in tail assembly.	6.15092e-45
NZ_CP011376.1\|WP_080946064.1\|1662412_1662709_+\|hypothetical-protein	gnl\|CDD\|368287	pfam05106, Phage_holin_3_1, Phage holin family (Lysis protein S). This family represents one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.	3.37491e-14
NZ_CP011376.1\|WP_046699334.1\|1658387_1659281_+\|baseplate-assembly-protein	gnl\|CDD\|164963	PHA02568, J, baseplate assembly protein; Provisional.	1.78426e-106
NZ_CP011376.1\|WP_080946063.1\|1659819_1661367_+\|phage-tail-protein	gnl\|CDD\|372197	pfam12571, DUF3751, Phage tail-collar fibre protein. This domain family is found in bacteria and viruses, and is approximately 160 amino acids in length. There are two completely conserved residues (K and W) that may be functionally important. The members are annotated as being putative phage tail or tail-collar proteins.	1.48739e-44
NZ_CP011376.1\|WP_080946060.1\|1654671_1654863_-\|GpE-family-phage-tail-protein	gnl\|CDD\|368955	pfam06528, Phage_P2_GpE, Phage P2 GpE. This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.	8.57966e-06
NZ_CP011376.1\|WP_080946056.1\|1647468_1648194_+\|Bro-N-domain-containing-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	6.53663e-17
NZ_CP011376.1\|WP_080946061.1\|1654793_1655084_-\|phage-tail-assembly-protein	gnl\|CDD\|378397	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14. This is family of various Myoviridae bacteriophage tail assembly chaperone, or TAC, proteins.	1.51321e-06
NZ_CP011376.1\|WP_046699336.1\|1663047_1663527_+\|peptidase-M15	gnl\|CDD\|311960	pfam08291, Peptidase_M15_3, Peptidase M15.	2.97202e-21
NZ_CP011376.1\|WP_080946058.1\|1649013_1650249_-\|hypothetical-protein	gnl\|CDD\|222877	PHA02561, D, tail protein; Provisional.	2.01674e-107
NZ_CP011376.1\|WP_080946062.1\|1659277_1659823_+\|phage-tail-protein-I	gnl\|CDD\|226820	COG4385, gpI, Bacteriophage P2-related tail formation protein [General function prediction only].	3.84994e-44
NZ_CP011376.1\|WP_046699337.1\|1663583_1664042_-\|phage-virion-morphogenesis-protein	gnl\|CDD\|368274	pfam05069, Phage_tail_S, Phage virion morphogenesis family. Protein S of phage P2 is thought to be involved in tail completion and stable head joining.	1.81697e-27

>NZ_CP011376.1|WP_046699331.1|1656073_1657240_-|phage-tail-sheath-protein
MTDYHHGVKVLEISEGTRPIRTVSTAVIGLIATASDADADFYPENQPVLVTNVQAAIGKAGKKGTLAKTLQAIADQTNAVTVVVRVPQSEDESTQTSAVVGSTEGGTYTGMKALLTAEAKLGVKPRILGAPGLDTAAVATALASIAQQLRAFAYVSAWGANTKEEAKSYRDTIGGREVMVIWPNFKAWDTQTHTDASTPAVAYALGLRAKIDQEQGWHKTLSNVVVNGPTGIDKDVFWQLQSSATDAGYLNENEVTTLIQREGFRFWGSRTCTSDPLFAFENYTRTAQVLADTIAEAHLWAVDKPMHPSLIRDIIEGINAKFRDLKAQGYIIDGSCWYDPELNSKETLKDGQLRLDYDYTPVPPLENLTLRQRITDSYLADFASRVTA
>NZ_CP011376.1|WP_046699330.1|1655322_1655838_-|phage-major-tail-tube-protein
MALPKKLKMMNLFNEGNSYLGQTGEVTLPKLGRKLENWRGGGMNGSVKVDLGLSDDITEFGWKLGGIDLTVLEQFATPTVSGLGLRFAGSYQQDDTGETTAVEIVVRGRHEEIDLGSAQSGEDTEVTIKTIWSYYKLTVNGKVVIEIDIPNMIENVNGKDMLSEHRKNIGA
>NZ_CP011376.1|WP_080946061.1|1654793_1655084_-|phage-tail-assembly-protein
MMSNTKQITLDKGVKLGENTINDITITKPVVAHLKGISLTKLFNFETDELMKLIPRVTAPSIPQPALSNMDVTEFMTLVGEVVGFLAEENTDTPEE
>NZ_CP011376.1|WP_080946060.1|1654671_1654863_-|GpE-family-phage-tail-protein
MYDLGGRGCWFFGGGEHGYPRRVEDVIANLGVVFGWTLSDCADLSIDELMDYNNLALERHQAQ
>NZ_CP011376.1|WP_046699329.1|1650768_1654446_-|phage-tail-tape-measure-protein
MSVLFLNVNFKGNDQLSSSLEKINSSAKKLESQIGDAKKKISELEKTKLNFNQFEKVKKDTAEAAVKLTAYKKVIKDLKAQMSSGGGDDTVAKRLKNAEKEAAKLQNTVEKGRVRMSNLSRSLEKAGQNSQSFAQSQQHLESQLRKSNESLKKQEERLSRLNKAEQHYVKMKGISDASRDFAGKALKATIATGTALAVPVKFTIDAEKSMADVAKVVDGLKIDGKVTAEYEQFERQMTEMSNRLGMQFSDLSDIIAGGAQGGIKQNELMQFGEHAVKTAIAWGMEAGRVGQAVAELRSTLKLSQDEVATLSDQINYLGNSSTNNAAHILEVVQRVGSVGAAAGVSGDLIAAMGASISGIDPSSVGTGLKNIIKSLTKGDSATKSQRKAWEALGTTAEEMASQMLKDPEKAITRYLEMLGKLPEEQRLAFASMISGDDALPVLAQMMNDPEKFARYAAEVKDGNKINGSVDEEYNSAVSTTAFKIDRAKVKMQNFAKDFGKQLLPFVSSIADAISGIVDKVSAWAAANPELFGYFAKGAAILVGILAGVTALAAAASFVVLPFAWLNFTLAKVTGGALTLGGAFKAMLNPIKSIPVILGLVKSGFMVAAGAVKAFTVGLLTSPIGLIGLALAAGAVVIYKYWKPISAFFKGVWSGISEAFAPIKPMFESIGNFIKPAIDWFKSLFSTTQAGEGNARQLGHAFGVYLVGAFKTLTAPIRAVWSVLEWVWDGISSLLGKPISVGDIFGSLREKWEKLLESLDGYWQKAQALWDKFTGIFKKSPSSAPAQSGEGGDFWSSLISGFGEVSQSIGKKMGSLWDSAGPKLEAAKTRLAAKVGEIWSSVTNVINGSDGGPDIAAAVGNKIQTVINTTSQASTTLSSVFSALINVVSVSATGMISIIGVSLSAIPAIVSAGVVPIPVIFAAALGALPKITAIVFIGMAAAASAGMSALALAINSKMQMAVLATRMGFVRIIQTIASSWRQMGSAMRGNPILSRMQSAIGSVLSYFTGVKGRFLAIGADIVGGLASGMNSRLGELRKTATQIAAVVENAARQRLDTHSPSRVMALVGRDVVAGLDVGMKRRFAPMLKGFRANIGKLASPANIARVSKAISAICRATGSNDVLGDIVAPKLSNNPLVGLALSRLPKVLGQNTPKPVNVTPIQSRPMPLDADGYKGAGGGHASTSNYTIHIHANPGMDERTLAKLVQAELERYEQRKAAKHRARMTD
>NZ_CP011376.1|WP_080946059.1|1650251_1650758_-|phage-tail-protein
MMMIIGMFVFRIPTIVYQSLSHKTEWRHASNSRVGVMPAYQFLGRGENTITLEGSIVPEFGNQKGLVKLSEMADAGKAYPLICGNGRVWGQYVIESIDETHTIFFKHGLARQVDFTIELKQITTPRTLKDNSLRAAGRAALAVATDYGIDTSRVTSSATRYGIDIGQE
>NZ_CP011376.1|WP_080946058.1|1649013_1650249_-|hypothetical-protein
MNPRIESLLAQGKTVLYAGMNIADRLAGEMASMLDRSYPQPVWRLVVNGEDMTDGVSSRLMSLTLTDNRGLEADTLDVTLTDHDGALSIPPKGATLEVYLGWHTSELVYKGMFIASEITHQGSPDTLTIRALSADLKESIKQKKERSFDQTTLGDIIQKIALEHQLTAKIHADLASSDIYHLDQNESDISLLTRLAEEFDAAAMIKDDVLLFMPIYVHETVSGEPLPTMVITRVLGDNHSYTEDADSISGVRAQFYDVTKKDKVPVLVGSDEDSVREIRYVHRDQKSATDAAMATYRRARRETAKLSYTLAHGDPLLIPQMPVMVLGIKDSIDATDWTLTNVVHNLDDGGYTCKIECERLLSAVYEITPPITVGEQKKDKPKSTAAKNPKSKGGKSRRAAKKRQREKSAKK
>NZ_CP011376.1|WP_080946057.1|1648724_1648961_-|hypothetical-protein
MEVIMAWVCPHCKQKTVRIRTSRDEHILMRRLWVQCQNLSCGWAGTYNCECDGELSPSATPDPQVKLPQGRKPPSISA
>NZ_CP011376.1|WP_046699328.1|1648219_1648477_+|hypothetical-protein
MRIINQTKSDKQIPKRGQVWQPKDPAHHSVIIADVNTHCVHLQYIDSPELTFQMDRATFLKYYTFLRYHKQIPPPNTLYNEPFFA
>NZ_CP011376.1|WP_080946056.1|1647468_1648194_+|Bro-N-domain-containing-protein
MKALSFNGVSLTPVHHNSQIYLTSTELAKALGYADAKSITNLYNTNADEFSADMTEVIESMTSKNLKRSLRIFSLRGCHLIAMFARTSVAKEFRQWVLDILDKQVGEPVVYVCKSTLTTPDDRRPLVNAVRMLQERTQISYEYAYKMVNQYMGTTHIGQIPLSELPKAVAYVHDLVFRARATANPAQDIIDDAAQQNRKAQQELGNTMVRFGQALDHLSQMQEQLIKQEKMIATAKRQLNA
>NZ_CP011376.1|WP_046699333.1|1658043_1658379_+|baseplate-assembly-protein
MISRKTGNTIPYLDQIRQSIQDILTTPIGSRVMRREYGSLLPELIDRPIDDVLVLQCYSAIYTALLQWEDRLIIEYISIEQIAHGVLDIRLDAHLAHIGTDTTLEMSISLT
>NZ_CP011376.1|WP_046699334.1|1658387_1659281_+|baseplate-assembly-protein
MSVDFNNLAKPDMIETLDYETILNNRKQALIARFDGKEQDNIRTILARESEPLTKFIEENAYRELILRNRINAAARACLLAYATGADLDHLAANFDMQRLITTAATDDRPAVYESDEVFRARVQRAFDRLSVAGPEAAYKYHCLSADGRVADVAVISPSPAVVNIAILQSDSQTGEASDELVNIVSQAVNAEHVRPIADRVSVQSAQIHRYRIEAKLYIGKDPEASAVLATATAKTRAYTESKNRIGRSVRLTAIHHCLHIDGVARIELLEPKADIAISALQAAYCESIDISIGGIE
>NZ_CP011376.1|WP_080946062.1|1659277_1659823_+|phage-tail-protein-I
MNINHLLPPNSTDFEHAVTNELASSTHLDVNIDMISRIDEIRDDFLGFLAWQYSLDSWDDSWQPSLKRELIKKSFRQHQLKGTRTAVREILEKFGYEATFVEWWEVEPNLPAGSFRLELSTAGTAMSEAVYQELNRLINDAKPVSRHLTNLSITLTPKSDLYLGVAVQMGDETTIYPRETT
>NZ_CP011376.1|WP_080946063.1|1659819_1661367_+|phage-tail-protein
MTTYHTLITNNGKAQIANAINTNTKVAITHLAVGDGRGTTPTPSAGATRLTGEKARVAVNHVGRHATKANWIEVHAIIPSSTGGFTVREIGLYAGKTLIAVGSFPATYKPSATEGSAREISIKLIIAVENASVVNVTLDDSLVYATRKWTQDNFVNHNEVIDNLTSTETTKPLSAAQGKKLQDDKLGKTENAVSATKLATARTINGVAFDGTQNITINDNTKAPAVHRHNWSEIDGKPAIITHPTQITSGDLDDYKEIGVYYCHTNVHARDIANTPSNLAFALEVVRAAGVVQIFREYETAIVYMRAFYRKWSPWKRLATTEDNAPTATKLATARTLALTGAVTGSVNFDGSGNVSLATALKGIDRREYTGTLTPSHNSFKSQKVPMTGSVEVLPDGRMVQYFNFECPIIYFHRHNQRSFYREKLNGDYFNANEDKPLLELPLWTPMPSKVQEARIHLSTGGNHYSYGEAMEWIYDWDSIFNQKANIKDKAYFAFRRHYGNNDEAVTFTIVVEGY
>NZ_CP011376.1|WP_046699335.1|1661366_1661978_+|DUF4376-domain-containing-protein
MPYLINPLENGKFELIDEHFIHLYDVDKDTLISMSDKEYQIHQTRANHLTTFENGEFVYRDEVVDEKIIKKQQQDSIWESIKQKRHTITRGGVYVKSVKKWFHTDDSSRTQYLALQILPEIPPDLMWKTMDNTFVKMDKALLTELAMTILQAEQANFANAERHRAKMLQADNPLEYDYSDGWSGVYEQAASQATEELKDMRNE
>NZ_CP011376.1|WP_080946064.1|1662412_1662709_+|hypothetical-protein
MNDLYNYLSEVWLHTKVATMSFVMATLMAVFRTKAQRGRVDLLESIMCGLFAIGIWSFLDWFGIPQTASVGIASAIGYFGTHWLADFIKNYLSKGVKK
>NZ_CP011376.1|WP_080946065.1|1662705_1663038_+|hypothetical-protein
MTFIKDNVFQYLSVKLPALGAFIMLVLIPALQVAVDYQIIPTEYHAFITGGVMLVLTMLGRKIYQPSLHTQSDGTPSVKETAKQAVKTAAKDTAYRELHRQIIKKSKRKK
>NZ_CP011376.1|WP_046699336.1|1663047_1663527_+|peptidase-M15
MTQLTKNFTLAELTRSDTASRLGLNNTPDERATTNLRQSARGLWQPVRDILGVPMRVSSGYRSPTLNRAISGSTTSAHCHGLAIDFVAPAFGDTRKIARHLVAELKERGIKFDQLILEFPDSSNSWIHLGYKHPNGQQRGQVLTAVKRGGRTVYLSGLR
>NZ_CP011376.1|WP_046699337.1|1663583_1664042_-|phage-virion-morphogenesis-protein
MSELSYLPEHLGRIIDGLSDGQMLRLKKTLAQKLRNNQKKRITAQKNADGSAYTPRKPQKRRGQKKRVRAKMMNTIKKAKHTKIKQSREGFAVGYVGRMAQVAEVHQYGLTARLNAKTGASAAYPVRQLLGISDEDKQMIDEAVLDYLEGIL
>NZ_CP011376.1|WP_046699338.1|1664038_1664569_-|phage-tail-protein
MKKPNQLRAHLLNGLPELAQNPDRLLVFIDEGRMVNTMANGLSFEYRYTLNIIITDFAEDLASVAILLFAWIRQHQSELMTNLDKATDGVKFVADILDNRKVDLSITLPITERVIVKETDGKAVISYPPEPTYTRPEMAKTVQLIDANDGVVLGEFPTGMPEEKWLLTMPLVDISR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP011376_1	1.1\|50616\|29\|NZ_CP011376\|CRISPRCasFinder,CRT	50616-50644	29	NZ_CP011376.1	1271203-1271231	1.0
NZ_CP011376_1	1.2\|50681\|27\|NZ_CP011376\|CRISPRCasFinder,CRT	50681-50707	27	NZ_CP011376.1	1135360-1135386	1.0
NZ_CP011376_1	1.3\|50744\|28\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	50744-50771	28	NZ_CP011376.1	1317190-1317217	1.0
NZ_CP011376_1	1.4\|50808\|27\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	50808-50834	27	NZ_CP011376.1	1258851-1258877	1.0
NZ_CP011376_1	1.5\|50871\|28\|NZ_CP011376\|CRISPRCasFinder,CRT	50871-50898	28	NZ_CP011376.1	365324-365351	1.0
NZ_CP011376_1	1.6\|50935\|27\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	50935-50961	27	NZ_CP011376.1	1363888-1363914	1.0
NZ_CP011376_1	1.7\|50998\|27\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	50998-51024	27	NZ_CP011376.1	694824-694850	1.0
NZ_CP011376_1	1.8\|51061\|27\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	51061-51087	27	NZ_CP011376.1	549326-549352	1.0
NZ_CP011376_1	1.10\|51189\|26\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	51189-51214	26	NZ_CP011376.1	299663-299688	1.0

1. spacer 1.1|50616|29|NZ_CP011376|CRISPRCasFinder,CRT matches to position: 1271203-1271231, mismatch: 0, identity: 1.0

atggttaatgatgataacccagatttaat	CRISPR spacer
atggttaatgatgataacccagatttaat	Protospacer
*****************************

2. spacer 1.2|50681|27|NZ_CP011376|CRISPRCasFinder,CRT matches to position: 1135360-1135386, mismatch: 0, identity: 1.0

atatccatctactaaccatcgcaaaaa	CRISPR spacer
atatccatctactaaccatcgcaaaaa	Protospacer
***************************

3. spacer 1.3|50744|28|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to position: 1317190-1317217, mismatch: 0, identity: 1.0

gttttgaatataggactaatgcccctaa	CRISPR spacer
gttttgaatataggactaatgcccctaa	Protospacer
****************************

4. spacer 1.4|50808|27|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to position: 1258851-1258877, mismatch: 0, identity: 1.0

attggtttgtgtaacggggaaattaag	CRISPR spacer
attggtttgtgtaacggggaaattaag	Protospacer
***************************

5. spacer 1.5|50871|28|NZ_CP011376|CRISPRCasFinder,CRT matches to position: 365324-365351, mismatch: 0, identity: 1.0

tttagaaatcacggatcattatatatgt	CRISPR spacer
tttagaaatcacggatcattatatatgt	Protospacer
****************************

6. spacer 1.6|50935|27|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to position: 1363888-1363914, mismatch: 0, identity: 1.0

tcaaaaatggtagcatttgttaagaat	CRISPR spacer
tcaaaaatggtagcatttgttaagaat	Protospacer
***************************

7. spacer 1.7|50998|27|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to position: 694824-694850, mismatch: 0, identity: 1.0

attgatgtaaacatcgatggtgtggtt	CRISPR spacer
attgatgtaaacatcgatggtgtggtt	Protospacer
***************************

8. spacer 1.8|51061|27|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to position: 549326-549352, mismatch: 0, identity: 1.0

tgcaggtggtgaatcagcgacacattc	CRISPR spacer
tgcaggtggtgaatcagcgacacattc	Protospacer
***************************

9. spacer 1.10|51189|26|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to position: 299663-299688, mismatch: 0, identity: 1.0

tcatggcgtagttgctacgctgtaat	CRISPR spacer
tcatggcgtagttgctacgctgtaat	Protospacer
**************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011376_1	1.15\|51506\|27\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	51506-51532	27	NZ_CP011375	Moraxella bovoculi strain 58069 plasmid unnamed, complete sequence	14285-14311	0	1.0
NZ_CP011376_3	3.1\|1657814\|24\|NZ_CP011376\|CRISPRCasFinder	1657814-1657837	24	MN994502	Phage NBSal003, complete genome	48812-48835	3	0.875
NZ_CP011376_1	1.6\|50935\|27\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	50935-50961	27	MN657113	Psychrobacter sp. strain ANT_P52 plasmid pA52P5, complete sequence	12610-12636	5	0.815
NZ_CP011376_1	1.8\|51061\|27\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	51061-51087	27	MN694744	Marine virus AFVG_250M730, complete genome	1823-1849	5	0.815
NZ_CP011376_1	1.11\|51251\|29\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	51251-51279	29	NZ_CP031072	Bacillus mycoides strain BPN401 plasmid pl395, complete sequence	318619-318647	5	0.828
NZ_CP011376_1	1.12\|51316\|28\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	51316-51343	28	MN694658	Marine virus AFVG_250M284, complete genome	3542-3569	5	0.821
NZ_CP011376_1	1.14\|51444\|26\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	51444-51469	26	KP280062	Vibrio phage phi 1, complete genome	57299-57324	5	0.808
NZ_CP011376_1	1.1\|50616\|29\|NZ_CP011376\|CRISPRCasFinder,CRT	50616-50644	29	KR093652	Moraxella phage Mcat28, complete genome	16756-16784	6	0.793
NZ_CP011376_1	1.1\|50616\|29\|NZ_CP011376\|CRISPRCasFinder,CRT	50616-50644	29	KP054477	Lactobacillus phage LfeInf, complete genome	78956-78984	6	0.793
NZ_CP011376_1	1.1\|50616\|29\|NZ_CP011376\|CRISPRCasFinder,CRT	50616-50644	29	MG592441	Vibrio phage 1.063.O._10N.261.45.C7, partial genome	25390-25418	6	0.793
NZ_CP011376_1	1.1\|50616\|29\|NZ_CP011376\|CRISPRCasFinder,CRT	50616-50644	29	GU071095	Synechococcus phage S-SM2, complete genome	69573-69601	6	0.793
NZ_CP011376_1	1.5\|50871\|28\|NZ_CP011376\|CRISPRCasFinder,CRT	50871-50898	28	NZ_CP041396	Bacteroides ovatus strain 3725 D1 iv plasmid unnamed1, complete sequence	89558-89585	6	0.786
NZ_CP011376_1	1.7\|50998\|27\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	50998-51024	27	NC_007765	Rhizobium etli CFN 42 plasmid p42e, complete sequence	16147-16173	6	0.778
NZ_CP011376_1	1.7\|50998\|27\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	50998-51024	27	NZ_CP020909	Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence	16143-16169	6	0.778
NZ_CP011376_1	1.7\|50998\|27\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	50998-51024	27	NC_021908	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence	16144-16170	6	0.778
NZ_CP011376_1	1.15\|51506\|27\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	51506-51532	27	NZ_AP014706	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence	301975-302001	6	0.778
NZ_CP011376_1	1.11\|51251\|29\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	51251-51279	29	NC_014824	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence	149149-149177	7	0.759
NZ_CP011376_1	1.11\|51251\|29\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	51251-51279	29	NC_014824	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence	323267-323295	7	0.759
NZ_CP011376_1	1.11\|51251\|29\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	51251-51279	29	NC_014824	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence	84248-84276	7	0.759
NZ_CP011376_1	1.11\|51251\|29\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	51251-51279	29	NC_049857	Lactococcus phage P1048, complete genome	60198-60226	7	0.759
NZ_CP011376_1	1.11\|51251\|29\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	51251-51279	29	MK448940	Streptococcus phage Javan444, complete genome	885-913	7	0.759

1. spacer 1.15|51506|27|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011375 (Moraxella bovoculi strain 58069 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ggaacctgttcgccgcttggatgttac	CRISPR spacer
ggaacctgttcgccgcttggatgttac	Protospacer
***************************

2. spacer 3.1|1657814|24|NZ_CP011376|CRISPRCasFinder matches to MN994502 (Phage NBSal003, complete genome) position: , mismatch: 3, identity: 0.875

gcaggcatcaccatcaatgctcaa	CRISPR spacer
gcagccatcagcatcaatgctcag	Protospacer
**** ***** ************.

3. spacer 1.6|50935|27|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to MN657113 (Psychrobacter sp. strain ANT_P52 plasmid pA52P5, complete sequence) position: , mismatch: 5, identity: 0.815

tcaaaaatggtagcatttgttaagaat	CRISPR spacer
tccaaaatgttagcatttgttaacatg	Protospacer
** ****** ************* *

4. spacer 1.8|51061|27|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to MN694744 (Marine virus AFVG_250M730, complete genome) position: , mismatch: 5, identity: 0.815

tgcaggtggtgaatcagcgacacattc	CRISPR spacer
tgcccgtggtgaatcagcgacacttat	Protospacer
***  ****************** * .

5. spacer 1.11|51251|29|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 5, identity: 0.828

tgggaatattatagcagatttatttaatt	CRISPR spacer
tgctaatataatagaagatttatttaaat	Protospacer
**  ***** **** ************ *

6. spacer 1.12|51316|28|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to MN694658 (Marine virus AFVG_250M284, complete genome) position: , mismatch: 5, identity: 0.821

aagcggttcacaaaaaccactcattaag	CRISPR spacer
cagttggacacaaaaaccactcattaag	Protospacer
 **. *  ********************

7. spacer 1.14|51444|26|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to KP280062 (Vibrio phage phi 1, complete genome) position: , mismatch: 5, identity: 0.808

ctgtggctttcatgtcacacctctca	CRISPR spacer
ctgtagctttcatatcacacctcatc	Protospacer
****.********.********* .

8. spacer 1.1|50616|29|NZ_CP011376|CRISPRCasFinder,CRT matches to KR093652 (Moraxella phage Mcat28, complete genome) position: , mismatch: 6, identity: 0.793

atggttaatgatgataacccagatttaat	CRISPR spacer
atggttgatgatgataagccagatacgct	Protospacer
******.********** ****** .. *

9. spacer 1.1|50616|29|NZ_CP011376|CRISPRCasFinder,CRT matches to KP054477 (Lactobacillus phage LfeInf, complete genome) position: , mismatch: 6, identity: 0.793

atggtt-aatgatgataacccagatttaat	CRISPR spacer
-cgatcaaatgaagataacccagacttaat	Protospacer
 .*.*. ***** ***********.*****

10. spacer 1.1|50616|29|NZ_CP011376|CRISPRCasFinder,CRT matches to MG592441 (Vibrio phage 1.063.O._10N.261.45.C7, partial genome) position: , mismatch: 6, identity: 0.793

atggttaatgatgataacccagatttaat	CRISPR spacer
tttgctaatgatcataacgcagatttaag	Protospacer
 * *.******* ***** *********

11. spacer 1.1|50616|29|NZ_CP011376|CRISPRCasFinder,CRT matches to GU071095 (Synechococcus phage S-SM2, complete genome) position: , mismatch: 6, identity: 0.793

atggttaatgatgataacccagatttaat	CRISPR spacer
gttgttaatgatgataccccagatagact	Protospacer
.* ************* *******  * *

12. spacer 1.5|50871|28|NZ_CP011376|CRISPRCasFinder,CRT matches to NZ_CP041396 (Bacteroides ovatus strain 3725 D1 iv plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tttagaaatcacggatcattatatatgt	CRISPR spacer
tgaagaaatctctgatcattatatattc	Protospacer
*  ******* * ************* .

13. spacer 1.7|50998|27|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to NC_007765 (Rhizobium etli CFN 42 plasmid p42e, complete sequence) position: , mismatch: 6, identity: 0.778

attgatgtaaacatcgatggtgtggtt	CRISPR spacer
cttgatgtagacatcgatggtgacggg	Protospacer
 ********.************  *

14. spacer 1.7|50998|27|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020909 (Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence) position: , mismatch: 6, identity: 0.778

attgatgtaaacatcgatggtgtggtt	CRISPR spacer
cttgatgtagacatcgatggtgacggg	Protospacer
 ********.************  *

15. spacer 1.7|50998|27|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to NC_021908 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence) position: , mismatch: 6, identity: 0.778

attgatgtaaacatcgatggtgtggtt	CRISPR spacer
cttgatgtagacatcgatggtgacggg	Protospacer
 ********.************  *

16. spacer 1.15|51506|27|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014706 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence) position: , mismatch: 6, identity: 0.778

ggaacctgttcgccgcttggatgttac	CRISPR spacer
tcaacctgttcgccgcctggatggtgg	Protospacer
  **************.****** *.

17. spacer 1.11|51251|29|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to NC_014824 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence) position: , mismatch: 7, identity: 0.759

tgggaatattatagcagatttatttaatt	CRISPR spacer
catatatattatagcagatttatttaaga	Protospacer
.. . **********************

18. spacer 1.11|51251|29|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to NC_014824 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence) position: , mismatch: 7, identity: 0.759

tgggaatattatagcagatttatttaatt	CRISPR spacer
catatatattatagcagatttatttaaga	Protospacer
.. . **********************

19. spacer 1.11|51251|29|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to NC_014824 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence) position: , mismatch: 7, identity: 0.759

tgggaatattatagcagatttatttaatt	CRISPR spacer
tatatatattatagcagatttttttaaga	Protospacer
*. . **************** *****

20. spacer 1.11|51251|29|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to NC_049857 (Lactococcus phage P1048, complete genome) position: , mismatch: 7, identity: 0.759

tgggaatattatagcagatttatttaatt	CRISPR spacer
atataatattatagcatatttatttaaaa	Protospacer
  . ************ **********

21. spacer 1.11|51251|29|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to MK448940 (Streptococcus phage Javan444, complete genome) position: , mismatch: 7, identity: 0.759

tgggaatattatagcagatttatttaatt	CRISPR spacer
atcaattattatagcagatatatttgatt	Protospacer
   .* ************* *****.***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

260263 : 314996

Moraxella_phage(48.94%)

tail,integrase,head

attL 250436:250451|attR 267773:267788

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
250436:250451	attL	NA	NA	NA	NA
WP_046695977.1\|260263_261382_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4J339	uncultured_Caudovirales_phage	1.4e-106	53.5
WP_046695978.1\|261416_261608_-	hypothetical protein	NA	NA	NA	NA
WP_046695979.1\|261618_262002_-	hypothetical protein	R9TLR7	Paenibacillus_phage	1.0e-32	59.7
WP_155400230.1\|262135_262405_-	hypothetical protein	NA	NA	NA	NA
WP_046699089.1\|262388_262616_-	hypothetical protein	NA	NA	NA	NA
WP_046699090.1\|262605_263019_-	hypothetical protein	NA	NA	NA	NA
WP_046699091.1\|263084_263288_-	hypothetical protein	NA	NA	NA	NA
WP_155400226.1\|263271_263598_-	hypothetical protein	B5AXA3	Iodobacteriophage	1.3e-36	73.3
WP_046699093.1\|264232_264631_-	hypothetical protein	NA	NA	NA	NA
WP_080945894.1\|264788_265328_-	single-stranded DNA-binding protein	M4SRQ0	Psychrobacter_phage	1.3e-36	65.3
WP_046695983.1\|265330_265933_-	YqaJ viral recombinase family protein	A0A2H4J882	uncultured_Caudovirales_phage	2.1e-67	64.1
WP_046695984.1\|265929_266700_-	phage recombination protein Bet	A0A0N7C1T0	Escherichia_phage	1.6e-51	55.5
WP_155400050.1\|266696_266843_-	hypothetical protein	NA	NA	NA	NA
WP_155400231.1\|266839_267079_-	hypothetical protein	NA	NA	NA	NA
WP_046699095.1\|267051_267396_-	hypothetical protein	NA	NA	NA	NA
WP_080945895.1\|268182_268713_-	hypothetical protein	A0A2H4JB10	uncultured_Caudovirales_phage	3.6e-07	58.7
267773:267788	attR	NA	NA	NA	NA
WP_046699096.1\|268863_269574_-	helix-turn-helix transcriptional regulator	A0A0R6PHW3	Moraxella_phage	2.7e-50	41.8
WP_046699097.1\|269698_269896_+	hypothetical protein	NA	NA	NA	NA
WP_046699098.1\|269939_270419_+	hypothetical protein	NA	NA	NA	NA
WP_080945896.1\|270415_271330_+	hypothetical protein	A0A0P0IKQ2	Acinetobacter_phage	9.9e-21	57.3
WP_155400232.1\|271289_271967_+	hypothetical protein	NA	NA	NA	NA
WP_046699100.1\|271963_272329_+	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	3.6e-14	39.3
WP_046699101.1\|272356_272635_+	hypothetical protein	M4T3Q1	Psychrobacter_phage	3.8e-16	52.5
WP_046695994.1\|272644_273166_+	hypothetical protein	A0A0P0ZAZ7	Stx2-converting_phage	5.4e-32	64.1
WP_080945897.1\|273155_273623_+	hypothetical protein	A0A0R6PCZ2	Moraxella_phage	2.6e-33	44.2
WP_046699102.1\|274015_274807_+	hypothetical protein	NA	NA	NA	NA
WP_046699103.1\|274966_275467_+	hypothetical protein	NA	NA	NA	NA
WP_046699104.1\|275802_276534_+	hypothetical protein	B6SD57	Bacteriophage	3.9e-44	43.3
WP_080945898.1\|276659_277235_-	LexA family transcriptional regulator	NA	NA	NA	NA
WP_046699105.1\|277326_277569_+	hypothetical protein	NA	NA	NA	NA
WP_046699106.1\|278468_278681_-	hypothetical protein	A0A0M3LSW2	Mannheimia_phage	4.2e-07	49.1
WP_046699107.1\|278724_278919_-	hypothetical protein	NA	NA	NA	NA
WP_046699108.1\|279036_279450_+	hypothetical protein	A0A0R6PH16	Moraxella_phage	5.2e-38	59.4
WP_046699109.1\|279449_280928_+	hypothetical protein	A0A0R6PHB9	Moraxella_phage	1.7e-232	77.6
WP_080945899.1\|280936_282331_+	DUF4055 domain-containing protein	A0A1B1P9C6	Acinetobacter_phage	1.6e-78	42.1
WP_080945900.1\|282479_284231_+\|head	head morphogenesis protein	A0A0R6PHM5	Moraxella_phage	2.0e-203	61.7
WP_046699110.1\|284386_285115_+	hypothetical protein	A0A1B1P9C7	Acinetobacter_phage	3.8e-23	36.4
WP_046699111.1\|285116_286064_+	hypothetical protein	A0A0D4DBM4	Acinetobacter_phage	1.4e-107	59.6
WP_080945901.1\|286063_286360_+	hypothetical protein	NA	NA	NA	NA
WP_046699112.1\|286377_286746_+	hypothetical protein	A0A0R6PGY9	Moraxella_phage	1.2e-22	51.4
WP_046699113.1\|286745_287102_+	hypothetical protein	A0A0R6PH70	Moraxella_phage	3.3e-33	59.0
WP_080945902.1\|287101_287440_+	hypothetical protein	A0A0R6PHN4	Moraxella_phage	4.2e-25	53.8
WP_046699114.1\|287445_287667_-	hypothetical protein	A0A0P0IKW9	Acinetobacter_phage	1.9e-10	66.0
WP_046699115.1\|288643_289033_+	hypothetical protein	A0A0R6PK03	Moraxella_phage	3.0e-27	48.1
WP_046699116.1\|289117_289630_+	hypothetical protein	A0A2H4PAV0	Aphanizomenon_phage	1.3e-06	37.9
WP_046699117.1\|289657_290572_+	hypothetical protein	A0A0R6PJY2	Moraxella_phage	2.1e-116	68.1
WP_046699118.1\|290781_291255_+	hypothetical protein	A0A0R6PKF1	Moraxella_phage	2.9e-24	43.2
WP_046699436.1\|291341_291530_+	hypothetical protein	A0A0R6PJS2	Moraxella_phage	1.8e-06	47.4
WP_046699119.1\|291850_292054_+	hypothetical protein	NA	NA	NA	NA
WP_080945904.1\|292127_293129_+	hypothetical protein	A0A0R6PHV6	Moraxella_phage	1.2e-56	54.8
WP_155400233.1\|293148_293538_+	hypothetical protein	A0A0M3LRY6	Mannheimia_phage	4.6e-20	56.5
WP_046699120.1\|293574_293850_-	hypothetical protein	NA	NA	NA	NA
WP_046699121.1\|293937_294156_+	hypothetical protein	NA	NA	NA	NA
WP_080945905.1\|294136_294964_+	hypothetical protein	A0A0P0J0J7	Acinetobacter_phage	1.3e-40	50.3
WP_046699122.1\|295008_295230_+	hypothetical protein	NA	NA	NA	NA
WP_046696013.1\|295505_295997_+	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_046699123.1\|295983_296340_+	hypothetical protein	NA	NA	NA	NA
WP_080945906.1\|296451_297474_+	RelA/SpoT domain-containing protein	A0A1B0VBT5	Salmonella_phage	2.8e-32	30.4
WP_046699124.1\|297530_300932_+	hypothetical protein	A0A0R6PDG4	Moraxella_phage	3.4e-82	35.8
WP_046699439.1\|300933_301266_+	hypothetical protein	A0A0R6PHH7	Moraxella_phage	4.6e-45	79.1
WP_046699125.1\|301343_301715_+	hypothetical protein	A0A0R6PK02	Moraxella_phage	1.8e-37	64.3
WP_046699126.1\|301758_302427_+\|tail	phage minor tail protein L	A0A0R6PJ72	Moraxella_phage	4.7e-97	76.0
WP_046696021.1\|302423_303215_+	C40 family peptidase	A0A0R6PIU2	Moraxella_phage	7.3e-97	62.8
WP_046696022.1\|303211_303805_+\|tail	tail assembly protein	A0A0R6PIF0	Moraxella_phage	2.8e-69	66.7
WP_080945907.1\|303801_309822_+	DUF1983 domain-containing protein	A0A0R6PHL4	Moraxella_phage	3.6e-26	33.2
WP_046699127.1\|309818_310178_+	hypothetical protein	A0A0R6PHL5	Moraxella_phage	4.3e-20	47.5
WP_046696024.1\|310174_311230_+	hypothetical protein	A0A0R6PHT2	Moraxella_phage	2.1e-59	39.0
WP_046696436.1\|311441_311810_+	hypothetical protein	A0A2H4JFC0	uncultured_Caudovirales_phage	1.4e-18	45.5
WP_046699128.1\|311850_312483_+	N-acetylmuramidase family protein	M4SQ91	Psychrobacter_phage	1.9e-26	38.5
WP_046699129.1\|312627_314214_+	peptide chain release factor 3	A0A2K9L6L3	Tupanvirus	5.5e-11	33.1
WP_080946156.1\|314363_314996_+	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	1.6e-30	39.7

DBSCAN-SWA_2

339527 : 389886

Moraxella_phage(69.77%)

tail,integrase,head

attL 339339:339398|attR 388389:388472

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
339339:339398	attL	NA	NA	NA	NA
WP_046699133.1\|339527_340532_+\|integrase	site-specific integrase	A0A0R6PHH4	Moraxella_phage	4.0e-108	57.7
WP_046699134.1\|340552_340834_-	hypothetical protein	A0A0R6PCX9	Moraxella_phage	1.6e-25	64.5
WP_080945911.1\|340847_341807_-	hypothetical protein	G0YVB3	Pseudomonas_phage	6.6e-84	55.0
WP_155400234.1\|342045_342312_-	hypothetical protein	NA	NA	NA	NA
WP_046699135.1\|342286_342523_-	hypothetical protein	NA	NA	NA	NA
WP_046699136.1\|342512_342926_-	hypothetical protein	NA	NA	NA	NA
WP_046699091.1\|342991_343195_-	hypothetical protein	NA	NA	NA	NA
WP_155400226.1\|343178_343505_-	hypothetical protein	B5AXA3	Iodobacteriophage	1.3e-36	73.3
WP_046699093.1\|344139_344538_-	hypothetical protein	NA	NA	NA	NA
WP_046699137.1\|344695_345397_-	hypothetical protein	A0A0R6PD08	Moraxella_phage	2.7e-34	38.3
WP_046699138.1\|345393_346023_-	hypothetical protein	A0A0R6PHJ4	Moraxella_phage	2.1e-94	79.3
WP_046699139.1\|346162_346663_-	siphovirus Gp157 family protein	A0A0R6PHR8	Moraxella_phage	3.6e-33	45.2
WP_155400217.1\|346659_346806_-	hypothetical protein	NA	NA	NA	NA
WP_155400180.1\|346792_346948_-	hypothetical protein	NA	NA	NA	NA
WP_155400231.1\|346944_347184_-	hypothetical protein	NA	NA	NA	NA
WP_046699095.1\|347156_347501_-	hypothetical protein	NA	NA	NA	NA
WP_080945895.1\|348287_348818_-	hypothetical protein	A0A2H4JB10	uncultured_Caudovirales_phage	3.6e-07	58.7
WP_046699140.1\|348819_349524_-	LexA family transcriptional regulator	A0A0R6PJ00	Moraxella_phage	1.7e-65	57.6
WP_046699141.1\|349675_349885_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_046699098.1\|349930_350410_+	hypothetical protein	NA	NA	NA	NA
WP_080945896.1\|350406_351321_+	hypothetical protein	A0A0P0IKQ2	Acinetobacter_phage	9.9e-21	57.3
WP_155400232.1\|351280_351958_+	hypothetical protein	NA	NA	NA	NA
WP_046699100.1\|351954_352320_+	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	3.6e-14	39.3
WP_046699101.1\|352347_352626_+	hypothetical protein	M4T3Q1	Psychrobacter_phage	3.8e-16	52.5
WP_046695994.1\|352635_353157_+	hypothetical protein	A0A0P0ZAZ7	Stx2-converting_phage	5.4e-32	64.1
WP_080945897.1\|353146_353614_+	hypothetical protein	A0A0R6PCZ2	Moraxella_phage	2.6e-33	44.2
WP_046699142.1\|353610_353799_+	hypothetical protein	NA	NA	NA	NA
WP_046699442.1\|354028_354316_+	hypothetical protein	S5MLS6	Pseudoalteromonas_phage	6.9e-29	67.8
WP_046699143.1\|354312_355104_+	hypothetical protein	NA	NA	NA	NA
WP_046699144.1\|355263_355764_+	hypothetical protein	NA	NA	NA	NA
WP_046695998.1\|355948_356374_+	hypothetical protein	A0A0R6PH16	Moraxella_phage	2.1e-66	87.2
WP_046699145.1\|356373_357849_+	hypothetical protein	A0A0R6PHB9	Moraxella_phage	1.0e-253	84.3
WP_046696000.1\|357848_359279_+	DUF4055 domain-containing protein	A0A0R6PHK8	Moraxella_phage	1.2e-203	74.4
WP_046696001.1\|359229_360216_+\|head	head morphogenesis protein	A0A0R6PHM5	Moraxella_phage	4.5e-144	78.2
WP_046699146.1\|360264_360930_+	hypothetical protein	A0A0R6PH19	Moraxella_phage	1.4e-45	69.3
WP_046699147.1\|360933_361950_+	hypothetical protein	A0A0R6PHI9	Moraxella_phage	1.7e-170	87.9
WP_046699148.1\|361960_362164_+	hypothetical protein	A0A0R6PCI4	Moraxella_phage	1.2e-19	71.6
WP_046696005.1\|362218_362566_+	hypothetical protein	A0A0R6PGY9	Moraxella_phage	3.6e-24	53.8
WP_046696006.1\|362567_362942_+	hypothetical protein	A0A0R6PHG4	Moraxella_phage	8.4e-27	51.3
WP_046696007.1\|362922_363351_+	HK97 gp10 family phage protein	A0A0R6PHN4	Moraxella_phage	4.6e-29	48.6
WP_046699149.1\|363353_363743_+	hypothetical protein	A0A0R6PK03	Moraxella_phage	8.7e-35	55.0
WP_046699116.1\|363827_364340_+	hypothetical protein	A0A2H4PAV0	Aphanizomenon_phage	1.3e-06	37.9
WP_046699117.1\|364367_365282_+	hypothetical protein	A0A0R6PJY2	Moraxella_phage	2.1e-116	68.1
WP_046696011.1\|365519_365975_+	hypothetical protein	A0A0R6PKF1	Moraxella_phage	1.8e-15	35.8
WP_080945912.1\|366781_367567_+	hypothetical protein	NA	NA	NA	NA
WP_080945913.1\|367859_368378_+	hypothetical protein	A0A0R6PDR4	Moraxella_phage	3.0e-38	75.2
WP_046699150.1\|368736_369228_+	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_046699123.1\|369214_369571_+	hypothetical protein	NA	NA	NA	NA
WP_080945906.1\|369682_370705_+	RelA/SpoT domain-containing protein	A0A1B0VBT5	Salmonella_phage	2.8e-32	30.4
WP_080945914.1\|370746_374796_+	tape measure protein	A0A220VZA0	Acinetobacter_phage	9.4e-55	31.2
WP_046699439.1\|374797_375130_+	hypothetical protein	A0A0R6PHH7	Moraxella_phage	4.6e-45	79.1
WP_046699125.1\|375207_375579_+	hypothetical protein	A0A0R6PK02	Moraxella_phage	1.8e-37	64.3
WP_046699126.1\|375622_376291_+\|tail	phage minor tail protein L	A0A0R6PJ72	Moraxella_phage	4.7e-97	76.0
WP_046699152.1\|376287_377103_+	C40 family peptidase	A0A0R6PIU2	Moraxella_phage	9.9e-97	63.2
WP_046699153.1\|377065_377263_-	hypothetical protein	NA	NA	NA	NA
WP_046696022.1\|377665_378259_+\|tail	tail assembly protein	A0A0R6PIF0	Moraxella_phage	2.8e-69	66.7
WP_080945907.1\|378255_384276_+	DUF1983 domain-containing protein	A0A0R6PHL4	Moraxella_phage	3.6e-26	33.2
WP_046699127.1\|384272_384632_+	hypothetical protein	A0A0R6PHL5	Moraxella_phage	4.3e-20	47.5
WP_046699154.1\|384628_385684_+	hypothetical protein	A0A0R6PHT2	Moraxella_phage	1.9e-60	39.4
WP_046696436.1\|385895_386264_+	hypothetical protein	A0A2H4JFC0	uncultured_Caudovirales_phage	1.4e-18	45.5
WP_080945915.1\|386304_386844_+	DUF882 domain-containing protein	A0A0R6PGV9	Moraxella_phage	1.7e-60	62.1
WP_046699155.1\|386876_387068_-	hypothetical protein	NA	NA	NA	NA
WP_046699156.1\|387190_387895_-	anti-CRISPR protein AcrVA4	NA	NA	NA	NA
WP_046699157.1\|387899_388178_-	anti-CRISPR N-acetyltransferase AcrVA5	NA	NA	NA	NA
WP_046697128.1\|388695_389886_+	elongation factor Tu	A0A1M7XUR5	Cedratvirus	2.5e-16	29.1
388389:388472	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1061398 : 1070584

Acinetobacter_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046696703.1\|1061398_1062712_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.7e-191	85.1
WP_046696702.1\|1062748_1063354_-	TetR/AcrR family transcriptional regulator	A0A0R6PIB6	Moraxella_phage	9.1e-39	52.5
WP_046696701.1\|1063371_1063713_-	quaternary ammonium transporter	NA	NA	NA	NA
WP_046696700.1\|1063822_1064518_-	7-cyano-7-deazaguanine synthase QueC	M1PKZ7	Cellulophaga_phage	8.9e-30	35.8
WP_046696699.1\|1064668_1065298_+	MarC family protein	NA	NA	NA	NA
WP_046699212.1\|1065366_1066203_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	5.1e-56	49.6
WP_046696697.1\|1066232_1067315_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	5.7e-92	53.2
WP_046696696.1\|1067347_1067971_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.4e-79	69.5
WP_080945990.1\|1068146_1069661_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_046696695.1\|1070092_1070584_-	glutathione peroxidase	A0A1S7DM81	Molluscum_contagiosum_virus	3.1e-13	35.2

DBSCAN-SWA_4

1281218 : 1294023

Vibrio_phage(25.0%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046699236.1\|1281218_1283726_-	hypothetical protein	U5PW53	Acinetobacter_phage	8.4e-30	23.6
WP_046699237.1\|1283790_1285464_-	hypothetical protein	A0A2I7RAT8	Vibrio_phage	3.1e-12	33.1
WP_046699238.1\|1285481_1285994_-	hypothetical protein	A0A2I7R0J6	Vibrio_phage	1.8e-24	40.0
WP_046699239.1\|1286066_1287224_-\|capsid	N4-gp56 family major capsid protein	A0A2P0PAU2	Pectobacterium_phage	6.5e-118	56.6
WP_046699240.1\|1287242_1288367_-	hypothetical protein	S4TT67	Salmonella_phage	1.6e-41	38.5
WP_046699241.1\|1288359_1288662_-	hypothetical protein	NA	NA	NA	NA
WP_046699242.1\|1288726_1291027_-	hypothetical protein	A0A0A0YRN0	Escherichia_phage	1.0e-167	47.7
WP_046699243.1\|1291023_1291668_-	hypothetical protein	NA	NA	NA	NA
WP_046699244.1\|1291677_1293252_-	hypothetical protein	A0A2P0PAT7	Pectobacterium_phage	2.6e-194	62.0
WP_046699245.1\|1293339_1294023_-	hypothetical protein	A0A0A0YUA7	Escherichia_phage	2.8e-60	53.3

DBSCAN-SWA_5

1300387 : 1335163

Moraxella_phage(20.83%)

integrase

attL 1325507:1325524|attR 1337201:1337218

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080946170.1\|1300387_1301596_+	hypothetical protein	A0A2P9J4X1	Pectobacterium_phage	5.2e-70	37.3
WP_046699254.1\|1301795_1301996_+	hypothetical protein	NA	NA	NA	NA
WP_046699255.1\|1301996_1302230_+	hypothetical protein	NA	NA	NA	NA
WP_046699256.1\|1302226_1302721_+	hypothetical protein	A0A0R6PGZ8	Moraxella_phage	6.3e-14	33.1
WP_046699257.1\|1302722_1303718_+	hypothetical protein	M4SLY4	Vibrio_phage	2.8e-69	41.0
WP_046699258.1\|1303782_1303992_+	hypothetical protein	NA	NA	NA	NA
WP_046699260.1\|1304362_1305475_+	hypothetical protein	A0A2P0N9T7	Pectobacterium_phage	6.1e-57	35.1
WP_046699261.1\|1305589_1306030_+	hypothetical protein	NA	NA	NA	NA
WP_046699456.1\|1306026_1307649_+	hypothetical protein	S4TTM6	Salmonella_phage	1.1e-131	48.8
WP_080946171.1\|1307841_1308291_+	HNH endonuclease	A0A0B5HDZ3	Vibrio_phage	2.0e-30	50.3
WP_046699263.1\|1309448_1309670_+	hypothetical protein	NA	NA	NA	NA
WP_080946019.1\|1309666_1310296_+	hypothetical protein	A0A127AYS1	Bacillus_phage	4.4e-12	34.6
WP_046699264.1\|1310755_1311418_-	hypothetical protein	D6QWP0	uncultured_phage	3.4e-47	57.4
WP_046699266.1\|1311616_1312018_-	hypothetical protein	NA	NA	NA	NA
WP_155400203.1\|1312111_1313146_-	hypothetical protein	A0A0R6PHT2	Moraxella_phage	1.5e-41	34.8
WP_046699268.1\|1313142_1313493_-	hypothetical protein	A0A0R6PHL5	Moraxella_phage	4.8e-24	43.6
WP_155400202.1\|1313489_1320215_-	hypothetical protein	A0A0R6PD22	Moraxella_phage	8.6e-21	87.7
WP_046699270.1\|1320362_1320587_+	hypothetical protein	NA	NA	NA	NA
WP_046699271.1\|1320567_1320888_+	hypothetical protein	NA	NA	NA	NA
WP_046699272.1\|1320887_1321199_+	hypothetical protein	NA	NA	NA	NA
WP_046699273.1\|1321400_1321688_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_046699459.1\|1321808_1322135_+	hypothetical protein	B5AXA3	Iodobacteriophage	9.5e-35	69.5
WP_155400241.1\|1322199_1322475_+	hypothetical protein	NA	NA	NA	NA
WP_155400201.1\|1322522_1322912_+	hypothetical protein	NA	NA	NA	NA
WP_046699275.1\|1322968_1323358_+	hypothetical protein	NA	NA	NA	NA
WP_080946172.1\|1323353_1324262_+	hypothetical protein	G0YVB3	Pseudomonas_phage	4.1e-83	54.3
WP_046699277.1\|1324258_1324543_+	hypothetical protein	I2GUJ4	Acinetobacter_phage	3.0e-08	43.4
WP_046699278.1\|1324520_1325483_+	hypothetical protein	A0A1X9I8L0	Pseudomonas_phage	1.3e-87	48.6
1325507:1325524	attL	NA	NA	NA	NA
WP_046699280.1\|1325712_1325946_+	hypothetical protein	A0A1J0GV14	Vibrio_phage	8.6e-14	54.8
WP_046699281.1\|1326199_1326817_+	hypothetical protein	A0A240EWM4	Vibrio_phage	3.1e-50	51.4
WP_046699282.1\|1328982_1329705_+	AAA family ATPase	M4SNJ2	Pseudoalteromonas_phage	1.1e-78	61.1
WP_046699283.1\|1329685_1330192_+	HNH endonuclease	A0A2P9J4Z6	Pectobacterium_phage	5.6e-34	47.0
WP_046699284.1\|1330214_1330913_+	hypothetical protein	A0A1L2C917	Pseudomonas_phage	4.0e-46	43.3
WP_046699285.1\|1330922_1331138_+	hypothetical protein	NA	NA	NA	NA
WP_046699286.1\|1331137_1331656_+	hypothetical protein	U5PZY8	Acinetobacter_phage	5.2e-35	44.4
WP_046699287.1\|1331636_1331939_+	hypothetical protein	NA	NA	NA	NA
WP_046699288.1\|1331944_1333042_+	ribonucleotide-diphosphate reductase subunit beta	M4M9S3	Vibrio_phage	5.5e-151	70.6
WP_046699289.1\|1333042_1334026_-\|integrase	site-specific integrase	A0A0R6PHH4	Moraxella_phage	1.5e-67	44.7
WP_046699290.1\|1334083_1335163_-	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	2.3e-08	48.3
1337201:1337218	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1514020 : 1522519

Moraxella_phage(62.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046696441.1\|1514020_1514269_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	7.8e-13	70.6
WP_046696440.1\|1514284_1514626_+	HopJ type III effector protein	NA	NA	NA	NA
WP_036362158.1\|1514898_1515135_+	50S ribosomal protein L28	NA	NA	NA	NA
WP_003659281.1\|1515177_1515333_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_046696439.1\|1515398_1515857_+	hypothetical protein	A0A0R6PHL4	Moraxella_phage	1.8e-15	63.9
WP_046696305.1\|1515958_1518433_+	DUF1983 domain-containing protein	A0A0R6PD22	Moraxella_phage	2.2e-62	78.3
WP_046696438.1\|1518429_1518792_+	hypothetical protein	A0A0R6PHL5	Moraxella_phage	9.9e-25	45.8
WP_046696437.1\|1518788_1519886_+	hypothetical protein	A0A0R6PHT2	Moraxella_phage	4.3e-47	34.7
WP_046696436.1\|1520097_1520466_+	hypothetical protein	A0A2H4JFC0	uncultured_Caudovirales_phage	1.4e-18	45.5
WP_080946037.1\|1520506_1521046_+	peptidase M15	A0A0R6PID9	Moraxella_phage	1.0e-57	59.9
WP_046696435.1\|1521346_1522519_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A7P9	Microcystis_virus	3.8e-57	36.5

DBSCAN-SWA_7

1560012 : 1673069

126

uncultured_Caudovirales_phage(14.81%)

tail,protease,terminase,portal,head,tRNA,plate,capsid,integrase,transposase

attL 1638183:1638200|attR 1673224:1673241

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046697470.1\|1560012_1561458_-\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_046696403.1\|1561536_1561992_-	YchJ family protein	NA	NA	NA	NA
WP_046697469.1\|1561991_1564130_-	polyphosphate kinase 1	NA	NA	NA	NA
WP_046696402.1\|1564295_1564970_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
WP_046696401.1\|1565026_1565425_+	hypothetical protein	NA	NA	NA	NA
WP_046696400.1\|1565670_1567422_+	L-lactate permease	NA	NA	NA	NA
WP_046696398.1\|1567788_1568997_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_046696397.1\|1569068_1570898_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_036366277.1\|1571068_1571341_-	HU family DNA-binding protein	A4JWM7	Burkholderia_virus	1.5e-20	59.6
WP_046697468.1\|1571855_1572479_+	hypothetical protein	NA	NA	NA	NA
WP_046697467.1\|1572734_1573247_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_046699309.1\|1573243_1574467_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	5.7e-32	29.4
WP_036366269.1\|1574574_1574958_+	Fe-S cluster assembly scaffold IscU	A0A2H4N7M4	Lake_Baikal_phage	1.3e-51	80.6
WP_046696395.1\|1574983_1575304_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	2.8e-23	50.0
WP_046696394.1\|1575313_1575835_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_046696393.1\|1575948_1577817_+	Fe-S protein assembly chaperone HscA	F2Y2E1	Organic_Lake_phycodnavirus	5.4e-98	39.0
WP_046696392.1\|1577854_1578193_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_155399994.1\|1578237_1578885_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.8e-24	35.6
WP_046696390.1\|1578954_1579998_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.9e-77	44.8
WP_046696389.1\|1580182_1581280_+	AI-2E family transporter	NA	NA	NA	NA
WP_046696388.1\|1581451_1582213_+	AAA family ATPase	NA	NA	NA	NA
WP_046696387.1\|1582261_1582915_+	DUF2057 domain-containing protein	NA	NA	NA	NA
WP_046696386.1\|1583040_1583298_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_036366243.1\|1583353_1583665_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_046696385.1\|1583795_1584146_-	hypothetical protein	NA	NA	NA	NA
WP_046696384.1\|1584145_1584661_-	hypothetical protein	NA	NA	NA	NA
WP_080946041.1\|1584736_1585912_-	hypothetical protein	NA	NA	NA	NA
WP_046699310.1\|1585913_1586579_-	LemA family protein	NA	NA	NA	NA
WP_046699311.1\|1587001_1588510_+	alanine:cation symporter family protein	NA	NA	NA	NA
WP_046697465.1\|1589004_1591062_-	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_036366232.1\|1591185_1591311_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA
WP_046696381.1\|1591326_1592466_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_046696380.1\|1592468_1594073_-	cytochrome d terminal oxidase subunit 1	NA	NA	NA	NA
WP_046696379.1\|1594238_1595237_-	porin	NA	NA	NA	NA
WP_046699464.1\|1595789_1596479_+\|tRNA	tRNA-(ms[2]io[6]A)-hydroxylase	NA	NA	NA	NA
WP_046696378.1\|1596536_1597994_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_046696377.1\|1598051_1598738_-	pirin family protein	NA	NA	NA	NA
WP_046696376.1\|1598903_1599299_+	WG repeat-containing protein	NA	NA	NA	NA
WP_046696375.1\|1599329_1600034_-	LrgB family protein	NA	NA	NA	NA
WP_046696374.1\|1600037_1600463_-	hypothetical protein	NA	NA	NA	NA
WP_155399992.1\|1600688_1601006_-	hypothetical protein	NA	NA	NA	NA
WP_046696372.1\|1601083_1602475_-	GTPase HflX	NA	NA	NA	NA
WP_046699312.1\|1602552_1603419_+	dihydropteroate synthase	NA	NA	NA	NA
WP_046697463.1\|1603421_1604459_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_046696370.1\|1604924_1605335_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.3e-48	64.2
WP_046696369.1\|1606878_1607298_-	hypothetical protein	NA	NA	NA	NA
WP_080946042.1\|1609183_1609384_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_046699313.1\|1609491_1610187_+	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_046699314.1\|1610084_1611578_+	TonB-dependent receptor	NA	NA	NA	NA
WP_155399991.1\|1611633_1612236_+	TonB-dependent receptor	NA	NA	NA	NA
WP_046699315.1\|1612501_1614352_+	transferrin-binding protein-like solute binding protein	NA	NA	NA	NA
WP_046697462.1\|1614488_1617266_+	lactoferrin/transferrin family TonB-dependent receptor	NA	NA	NA	NA
WP_155400103.1\|1617343_1617679_+	hypothetical protein	NA	NA	NA	NA
WP_080946043.1\|1617819_1620126_-\|tail	phage tail tape measure protein	A0A1W6JT50	Escherichia_phage	2.1e-107	44.5
WP_155399990.1\|1620169_1620310_+	hypothetical protein	NA	NA	NA	NA
WP_080946178.1\|1620306_1620450_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_046696363.1\|1620487_1620790_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_046696362.1\|1620905_1621418_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	7.9e-44	50.9
WP_046696361.1\|1621440_1622829_-\|tail	phage tail protein	A4JWK5	Burkholderia_virus	1.3e-96	43.5
WP_046696360.1\|1622841_1623348_-	hypothetical protein	A4JWK3	Burkholderia_virus	6.9e-24	36.6
WP_046696359.1\|1623347_1623815_-	DUF1320 domain-containing protein	B7SDP4	Haemophilus_phage	7.1e-07	30.0
WP_046696358.1\|1623818_1624118_-	hypothetical protein	NA	NA	NA	NA
WP_155399989.1\|1624128_1624512_-	DUF2190 family protein	NA	NA	NA	NA
WP_046697459.1\|1625363_1626449_-	hypothetical protein	A4JWJ9	Burkholderia_virus	2.5e-47	36.4
WP_080946046.1\|1626698_1627040_-	hypothetical protein	Q6QIE8	Burkholderia_phage	4.4e-14	42.5
WP_046696356.1\|1627060_1627534_-	regulatory protein GemA	NA	NA	NA	NA
WP_046696355.1\|1627600_1627876_-	HU family DNA-binding protein	A3E2K9	Sodalis_phage	4.4e-17	53.3
WP_046696354.1\|1628440_1628686_-	hypothetical protein	NA	NA	NA	NA
WP_046696353.1\|1628695_1628923_-	hypothetical protein	NA	NA	NA	NA
WP_046696352.1\|1628949_1630089_-	AAA family ATPase	A4JWN1	Burkholderia_virus	1.6e-89	55.1
WP_155400102.1\|1630098_1630857_-	hypothetical protein	J9STP5	Pseudomonas_phage	4.2e-33	34.7
WP_080946048.1\|1630819_1632085_+	DUF935 family protein	Q6QIC0	Burkholderia_phage	4.2e-78	40.4
WP_080946049.1\|1632081_1633305_+	hypothetical protein	Q6QIB9	Burkholderia_phage	7.0e-46	47.8
WP_046699316.1\|1633422_1633905_+	phage virion morphogenesis protein	A0A0A1IUZ3	Pseudomonas_phage	1.9e-10	29.7
WP_046696350.1\|1634180_1635542_-	phosphoglucosamine mutase	A0A127AWJ1	Bacillus_phage	5.8e-17	23.7
WP_080946050.1\|1635751_1636462_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_046696349.1\|1636526_1637105_-	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_046699317.1\|1637227_1638199_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
1638183:1638200	attL	NA	NA	NA	NA
WP_046699318.1\|1638372_1639521_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4J8L8	uncultured_Caudovirales_phage	1.4e-75	40.9
WP_080946051.1\|1639531_1639798_-	hypothetical protein	NA	NA	NA	NA
WP_155400193.1\|1639853_1640030_-	hypothetical protein	NA	NA	NA	NA
WP_155400192.1\|1640026_1640188_-	hypothetical protein	NA	NA	NA	NA
WP_080946052.1\|1640177_1640591_-	hypothetical protein	NA	NA	NA	NA
WP_046699320.1\|1640647_1641226_-	hypothetical protein	NA	NA	NA	NA
WP_155400191.1\|1641225_1641399_-	hypothetical protein	NA	NA	NA	NA
WP_046699321.1\|1641656_1642571_+	hypothetical protein	NA	NA	NA	NA
WP_046699322.1\|1642629_1643400_-	DUF1829 domain-containing protein	NA	NA	NA	NA
WP_155400190.1\|1643390_1643828_-	hypothetical protein	Q4ZCB9	Staphylococcus_virus	1.5e-06	32.5
WP_046699323.1\|1643827_1644571_-	LexA family transcriptional regulator	A0A0R6PJ00	Moraxella_phage	3.0e-52	48.2
WP_080946054.1\|1644677_1644851_+	hypothetical protein	NA	NA	NA	NA
WP_046699324.1\|1644847_1645096_+	hypothetical protein	NA	NA	NA	NA
WP_046699325.1\|1645092_1645314_+	hypothetical protein	NA	NA	NA	NA
WP_046699326.1\|1645366_1645720_+	hypothetical protein	NA	NA	NA	NA
WP_080946055.1\|1645716_1646595_+	hypothetical protein	A0A0P0HSN8	Acinetobacter_phage	1.2e-23	59.2
WP_046699327.1\|1646668_1647184_+	hypothetical protein	NA	NA	NA	NA
WP_080946056.1\|1647468_1648194_+	Bro-N domain-containing protein	A0A0P0J0J7	Acinetobacter_phage	2.3e-44	50.0
WP_046699328.1\|1648219_1648477_+	hypothetical protein	NA	NA	NA	NA
WP_080946057.1\|1648724_1648961_-	hypothetical protein	NA	NA	NA	NA
WP_080946058.1\|1649013_1650249_-	hypothetical protein	A0A2H4JAV0	uncultured_Caudovirales_phage	5.7e-80	45.1
WP_080946059.1\|1650251_1650758_-\|tail	phage tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	1.2e-31	48.2
WP_046699329.1\|1650768_1654446_-\|tail	phage tail tape measure protein	A0A0R6PDG4	Moraxella_phage	5.9e-48	33.6
WP_080946060.1\|1654671_1654863_-\|tail	GpE family phage tail protein	E5E3U7	Burkholderia_phage	7.1e-06	53.7
WP_080946061.1\|1654793_1655084_-\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	1.3e-06	29.3
WP_046699330.1\|1655322_1655838_-\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	4.5e-55	62.9
WP_046699331.1\|1656073_1657240_-\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	1.4e-157	71.5
WP_046699332.1\|1657402_1658047_+\|plate	phage baseplate assembly protein V	A0A2H4JFJ8	uncultured_Caudovirales_phage	7.9e-33	54.6
WP_046699333.1\|1658043_1658379_+\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	4.9e-18	46.3
WP_046699334.1\|1658387_1659281_+\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	7.1e-72	49.7
WP_080946062.1\|1659277_1659823_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.4e-30	37.1
WP_080946063.1\|1659819_1661367_+\|tail	phage tail protein	A0A2H4J194	uncultured_Caudovirales_phage	1.2e-26	36.2
WP_046699335.1\|1661366_1661978_+	DUF4376 domain-containing protein	A0A0R6PC75	Moraxella_phage	2.0e-49	55.2
WP_080946064.1\|1662412_1662709_+	hypothetical protein	A0A1B1P9F5	Acinetobacter_phage	1.3e-17	44.6
WP_080946065.1\|1662705_1663038_+	hypothetical protein	A0A0B5L5G5	Acinetobacter_phage	6.3e-18	63.8
WP_046699336.1\|1663047_1663527_+	peptidase M15	A0A0R6PGV9	Moraxella_phage	1.4e-39	56.2
WP_046699337.1\|1663583_1664042_-	phage virion morphogenesis protein	E5FFH6	Burkholderia_phage	2.4e-15	35.1
WP_046699338.1\|1664038_1664569_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	2.1e-39	54.8
WP_046699339.1\|1664565_1665363_-	DUF3380 domain-containing protein	Q9ZXL6	Pseudomonas_virus	2.4e-55	47.1
WP_046699340.1\|1665364_1665568_-	LysM peptidoglycan-binding domain-containing protein	A4PE33	Ralstonia_virus	2.3e-07	47.7
WP_046699341.1\|1665564_1666014_-\|head	head completion protein	Q9ZXM1	Pseudomonas_virus	4.0e-15	35.8
WP_046699342.1\|1666126_1666813_-	hypothetical protein	Q9ZXM2	Pseudomonas_virus	3.8e-41	45.6
WP_046699343.1\|1666822_1667839_-\|capsid	phage major capsid protein, P2 family	E5E3W8	Burkholderia_phage	2.1e-104	58.2
WP_046699344.1\|1667849_1668662_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	2.1e-54	47.5
WP_046699345.1\|1668819_1670586_+\|terminase	terminase	Q9ZXM5	Pseudomonas_virus	9.3e-225	64.8
WP_080946066.1\|1670602_1671385_-	KilA-N domain-containing protein	I6R977	Salmonella_phage	1.1e-31	44.6
WP_155400189.1\|1671725_1671881_-	hypothetical protein	NA	NA	NA	NA
WP_080946067.1\|1672091_1673069_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	7.4e-115	61.9
1673224:1673241	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2041029 : 2083490

Moraxella_phage(86.49%)

tail,terminase,portal,head,capsid,integrase

attL 2060990:2061005|attR 2092382:2092397

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046699373.1\|2041029_2041662_-	N-acetylmuramidase family protein	M4SQ91	Psychrobacter_phage	2.9e-27	38.5
WP_046696436.1\|2041702_2042071_-	hypothetical protein	A0A2H4JFC0	uncultured_Caudovirales_phage	1.4e-18	45.5
WP_046696437.1\|2042282_2043380_-	hypothetical protein	A0A0R6PHT2	Moraxella_phage	4.3e-47	34.7
WP_046696438.1\|2043376_2043739_-	hypothetical protein	A0A0R6PHL5	Moraxella_phage	9.9e-25	45.8
WP_080946112.1\|2043735_2049777_-	DUF1983 domain-containing protein	A0A0R6PGJ9	Moraxella_phage	8.3e-31	41.4
WP_046699487.1\|2049817_2050393_-\|tail	tail assembly protein	A0A0R6PIW1	Moraxella_phage	8.3e-74	89.0
WP_046699374.1\|2050800_2050998_+	hypothetical protein	A0A0M3LQV3	Mannheimia_phage	2.8e-05	43.1
WP_046699375.1\|2050972_2051764_-	C40 family peptidase	A0A0R6PIM4	Moraxella_phage	1.3e-130	83.3
WP_046696310.1\|2051819_2052206_-	hypothetical protein	NA	NA	NA	NA
WP_046696311.1\|2052205_2052979_-	hypothetical protein	NA	NA	NA	NA
WP_046699376.1\|2053802_2054201_-	hypothetical protein	A0A0R6PK02	Moraxella_phage	2.3e-38	59.8
WP_080946113.1\|2054278_2054614_-\|tail	phage tail protein	A0A0R6PHZ9	Moraxella_phage	1.2e-51	80.7
WP_080946114.1\|2054623_2058316_-	hypothetical protein	A0A0R6PD92	Moraxella_phage	9.8e-144	34.9
WP_046699377.1\|2058346_2058748_-	hypothetical protein	NA	NA	NA	NA
WP_046699378.1\|2058792_2059110_-	DUF4035 domain-containing protein	A0A0R6PHY9	Moraxella_phage	2.1e-23	56.2
WP_046699379.1\|2059130_2059463_-	hypothetical protein	A0A0R6PJ73	Moraxella_phage	1.0e-12	38.1
WP_046699380.1\|2059498_2059927_-	hypothetical protein	A0A0R6PKQ7	Moraxella_phage	6.6e-52	73.8
WP_046699381.1\|2059930_2060299_-	DUF3168 domain-containing protein	A0A0R6PKK8	Moraxella_phage	1.2e-25	49.1
WP_046699382.1\|2060322_2060865_-	hypothetical protein	A0A0R6PK38	Moraxella_phage	5.8e-45	51.4
WP_046699383.1\|2060861_2061191_-\|head	phage head closure protein	A0A0R6PCW7	Moraxella_phage	4.0e-33	67.6
2060990:2061005	attL	NA	NA	NA	NA
WP_046699384.1\|2061200_2061488_-\|head,tail	phage gp6-like head-tail connector protein	A0A0R6PHI1	Moraxella_phage	2.8e-38	82.1
WP_046699385.1\|2061484_2062810_-\|portal	phage portal protein	A0A0R6PGT4	Moraxella_phage	2.0e-208	82.2
WP_046699386.1\|2063084_2064440_-\|capsid	phage major capsid protein	A0A0R6PCM7	Moraxella_phage	1.0e-207	83.6
WP_080946115.1\|2064436_2065054_-	peptidase U35	A0A0R6PGX0	Moraxella_phage	4.2e-92	84.9
WP_046696326.1\|2065121_2065340_-	hypothetical protein	NA	NA	NA	NA
WP_046696327.1\|2065336_2065753_-	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
WP_080946116.1\|2065797_2067420_-\|terminase	terminase large subunit	A0A0R6PCM3	Moraxella_phage	2.5e-285	88.3
WP_046696329.1\|2067514_2067874_-	DUF3310 domain-containing protein	A0A0R6PC49	Moraxella_phage	3.4e-41	69.6
WP_046696330.1\|2067857_2068037_-	hypothetical protein	NA	NA	NA	NA
WP_046696331.1\|2068033_2068477_-	hypothetical protein	A0A0R6PGM4	Moraxella_phage	2.4e-36	53.0
WP_046696332.1\|2068593_2068899_-	HNH endonuclease	A0A0R6PH58	Moraxella_phage	9.8e-42	80.8
WP_155399987.1\|2068901_2069054_-	hypothetical protein	A0A0R6PKL5	Moraxella_phage	1.4e-09	60.0
WP_046696333.1\|2069257_2069680_-	hypothetical protein	A0A0R6PGQ4	Moraxella_phage	1.4e-49	69.3
WP_046699388.1\|2069999_2072666_-	hypothetical protein	A0A0R6PCH4	Moraxella_phage	0.0e+00	81.7
WP_046699389.1\|2072658_2073399_-	phage antirepressor protein	A0A0R6PGU3	Moraxella_phage	2.7e-117	85.8
WP_046699390.1\|2073479_2073689_-	helix-turn-helix transcriptional regulator	A0A0R6PHU4	Moraxella_phage	2.4e-15	55.2
WP_080946117.1\|2073828_2074482_+	LexA family transcriptional regulator	A0A0R6PHW4	Moraxella_phage	7.2e-90	70.5
WP_046699391.1\|2074490_2074835_+	hypothetical protein	NA	NA	NA	NA
WP_046699392.1\|2074995_2075307_-	hypothetical protein	A0A0R6PGK1	Moraxella_phage	1.0e-46	89.1
WP_046699492.1\|2075702_2076041_+	hypothetical protein	A0A0R6PH37	Moraxella_phage	2.1e-24	86.4
WP_046696341.1\|2076031_2076322_+	hypothetical protein	A0A0R6PGT5	Moraxella_phage	4.8e-22	57.1
WP_046696342.1\|2076321_2076546_+	hypothetical protein	NA	NA	NA	NA
WP_046696343.1\|2076569_2076908_+	hypothetical protein	NA	NA	NA	NA
WP_080946118.1\|2076919_2077750_+	DUF2303 family protein	K7ZMK3	Xanthomonas_citri_phage	2.6e-20	31.5
WP_046699393.1\|2077803_2078028_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_046699394.1\|2078024_2079239_-\|integrase	integrase family protein	A0A0R6PIF4	Moraxella_phage	1.1e-102	48.4
WP_080946119.1\|2079622_2080525_-	cytochrome-c peroxidase	NA	NA	NA	NA
WP_080946120.1\|2080521_2080728_-	hypothetical protein	NA	NA	NA	NA
WP_046699395.1\|2080853_2083490_-	type I DNA topoisomerase	A0A1V0SB35	Catovirus	1.2e-95	35.0
2092382:2092397	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP011376.1|WP_046699156.1|387190_387895_-|anti-CRISPR-protein-AcrVA4

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Acr_ID: NZ_CP011376.1|WP_046699157.1|387899_388178_-|anti-CRISPR-N-acetyltransferase-AcrVA5

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Acr_ID: NZ_CP011376.1|WP_046697119.1|443071_444031_-|hypothetical-protein

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Acr_ID: NZ_CP011376.1|WP_046699270.1|1320362_1320587_+|hypothetical-protein

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Acr_ID: NZ_CP011376.1|WP_046699271.1|1320567_1320888_+|hypothetical-protein

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Acr_ID: NZ_CP011376.1|WP_046699272.1|1320887_1321199_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP011376.1|WP_046699156.1|387190_387895_-|anti-CRISPR-protein-AcrVA4

387190_387895_-

234 aa aa

AcrVA4

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR0556\|WP_046699156.1\|AcrVA4\|V-A\|Verified\|Moraxella-bovoculi	1.0	1	1.0

339527-389886

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP011376_1	TypeI-A,TypeV-A	1.5\|50871\|28\|NZ_CP011376\|CRISPRCasFinder,CRT	50871-50898	28	365324-365351	0

1. spacer 1.5|50871|28|NZ_CP011376|CRISPRCasFinder,CRT matches to NZ_CP011376 position: 365324-365351, mismatch: 0

tttagaaatcacggatcattatatatgt	CRISPR spacer
tttagaaatcacggatcattatatatgt	Protospacer
****************************

NZ_CP011376.1|WP_046699157.1|387899_388178_-|anti-CRISPR-N-acetyltransferase-AcrVA5

387899_388178_-

92 aa aa

AcrVA5

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR0557\|WP_046699157.1\|AcrVA5\|V-A\|Verified\|Moraxella-bovoculi	1.0	1	1.0

339527-389886

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP011376_1	TypeI-A,TypeV-A	1.5\|50871\|28\|NZ_CP011376\|CRISPRCasFinder,CRT	50871-50898	28	365324-365351	0

1. spacer 1.5|50871|28|NZ_CP011376|CRISPRCasFinder,CRT matches to NZ_CP011376 position: 365324-365351, mismatch: 0

tttagaaatcacggatcattatatatgt	CRISPR spacer
tttagaaatcacggatcattatatatgt	Protospacer
****************************

NZ_CP011376.1|WP_046697119.1|443071_444031_-|hypothetical-protein

443071_444031_-

319 aa aa

AcrVA2

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR0500\|AKG12143.1\|AcrVA2\|V-A\|Verified\|Moraxella-bovoculi	1.0	1	1.0

HTH_XRE

Identity	Hit_domain_coverage
NA	NA

NZ_CP011376.1|WP_046699270.1|1320362_1320587_+|hypothetical-protein

1320362_1320587_+

74 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.43636363636363634	0.9482758620689655

1300387-1335163

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP011376_1	TypeI-A,TypeV-A	1.3\|50744\|28\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	50744-50771	28	1317217-1317190	0

1. spacer 1.3|50744|28|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011376 position: 1317217-1317190, mismatch: 0

gttttgaatataggactaatgcccctaa	CRISPR spacer
gttttgaatataggactaatgcccctaa	Protospacer
****************************

NZ_CP011376.1|WP_046699271.1|1320567_1320888_+|hypothetical-protein

1320567_1320888_+

106 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.43636363636363634	0.9482758620689655

1300387-1335163

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP011376_1	TypeI-A,TypeV-A	1.3\|50744\|28\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	50744-50771	28	1317217-1317190	0

1. spacer 1.3|50744|28|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011376 position: 1317217-1317190, mismatch: 0

gttttgaatataggactaatgcccctaa	CRISPR spacer
gttttgaatataggactaatgcccctaa	Protospacer
****************************

NZ_CP011376.1|WP_046699272.1|1320887_1321199_+|hypothetical-protein

1320887_1321199_+

103 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.43636363636363634	0.9482758620689655

1300387-1335163

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP011376_1	TypeI-A,TypeV-A	1.3\|50744\|28\|NZ_CP011376\|CRISPRCasFinder,CRT,PILER-CR	50744-50771	28	1317217-1317190	0

1. spacer 1.3|50744|28|NZ_CP011376|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011376 position: 1317217-1317190, mismatch: 0

gttttgaatataggactaatgcccctaa	CRISPR spacer
gttttgaatataggactaatgcccctaa	Protospacer
****************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011376

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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