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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_JNGR01000010 Listeria monocytogenes strain L1181 L1181_10, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000029 Listeria monocytogenes strain L1181 L1181_29, whole genome shotgun sequence 0 crisprs DinG 0 0 0 0
NZ_JNGR01000011 Listeria monocytogenes strain L1181 L1181_11, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000001 Listeria monocytogenes strain L1181 L1181_1, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000033 Listeria monocytogenes strain L1181 L1181_33, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000005 Listeria monocytogenes strain L1181 L1181_5, whole genome shotgun sequence 0 crisprs cas3 0 0 0 0
NZ_JNGR01000017 Listeria monocytogenes strain L1181 L1181_17, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000003 Listeria monocytogenes strain L1181 L1181_3, whole genome shotgun sequence 0 crisprs csa3 0 0 1 0
NZ_JNGR01000025 Listeria monocytogenes strain L1181 L1181_25, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000002 Listeria monocytogenes strain L1181 L1181_2, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000037 Listeria monocytogenes strain L1181 L1181_37, whole genome shotgun sequence 0 crisprs WYL,csa3 0 0 1 0
NZ_JNGR01000042 Listeria monocytogenes strain L1181 L1181_42, whole genome shotgun sequence 0 crisprs NA 0 0 1 1
NZ_JNGR01000036 Listeria monocytogenes strain L1181 L1181_36, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000035 Listeria monocytogenes strain L1181 L1181_35, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000018 Listeria monocytogenes strain L1181 L1181_18, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000032 Listeria monocytogenes strain L1181 L1181_32, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000019 Listeria monocytogenes strain L1181 L1181_19, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000023 Listeria monocytogenes strain L1181 L1181_23, whole genome shotgun sequence 0 crisprs cas3 0 0 0 0
NZ_JNGR01000013 Listeria monocytogenes strain L1181 L1181_13, whole genome shotgun sequence 1 crisprs NA 0 0 0 0
NZ_JNGR01000027 Listeria monocytogenes strain L1181 L1181_G6054_27, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000020 Listeria monocytogenes strain L1181 L1181_20, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000012 Listeria monocytogenes strain L1181 L1181_12, whole genome shotgun sequence 1 crisprs NA 0 0 0 0
NZ_JNGR01000008 Listeria monocytogenes strain L1181 L1181_8, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000030 Listeria monocytogenes strain L1181 L1181_30, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000014 Listeria monocytogenes strain L1181 L1181_14, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000009 Listeria monocytogenes strain L1181 L1181_9, whole genome shotgun sequence 0 crisprs WYL,casR 0 0 0 0
NZ_JNGR01000040 Listeria monocytogenes strain L1181 L1181_40, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000022 Listeria monocytogenes strain L1181 L1181_22, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000026 Listeria monocytogenes strain L1181 L1181_26, whole genome shotgun sequence 0 crisprs NA 0 0 1 0
NZ_JNGR01000004 Listeria monocytogenes strain L1181 L1181_4, whole genome shotgun sequence 0 crisprs DinG 0 0 0 0
NZ_JNGR01000021 Listeria monocytogenes strain L1181 L1181_21, whole genome shotgun sequence 0 crisprs NA 0 0 1 0
NZ_JNGR01000039 Listeria monocytogenes strain L1181 L1181_39, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000015 Listeria monocytogenes strain L1181 L1181_15, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000028 Listeria monocytogenes strain L1181 L1181_G6054_28, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000016 Listeria monocytogenes strain L1181 L1181_16, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000006 Listeria monocytogenes strain L1181 L1181_6, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000041 Listeria monocytogenes strain L1181 L1181_41, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000034 Listeria monocytogenes strain L1181 L1181_34, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000007 Listeria monocytogenes strain L1181 L1181_7, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000024 Listeria monocytogenes strain L1181 L1181_24, whole genome shotgun sequence 0 crisprs DEDDh,cas3 0 0 0 0
NZ_JNGR01000031 Listeria monocytogenes strain L1181 L1181_31, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
NZ_JNGR01000038 Listeria monocytogenes strain L1181 L1181_38, whole genome shotgun sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_JNGR01000021
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 147724 : 155147 8 Hokovirus(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_JNGR01000042
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 107 : 39749 61 Listeria_phage(96.55%) holin,tail,terminase,integrase attL 1:20|attR 40204:40223
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_JNGR01000042.1|WP_003731276.1|39232_39484_-|hypothetical-protein 39232_39484_- 83 aa aa AcrIIA12 NA NA 107-39749 NA
3. NZ_JNGR01000012
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_JNGR01000012_1 1056-1640 Orphan NA
7 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_JNGR01000003
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 44488 : 55217 17 Listeria_phage(40.0%) tail,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
5. NZ_JNGR01000037
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 75638 : 83480 7 Streptococcus_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
6. NZ_JNGR01000026
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 86961 : 95247 8 Synechococcus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
7. NZ_JNGR01000013
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_JNGR01000013_1 733-990 Orphan NA
3 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage