CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CWLB01000094	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000040	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000139	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000119	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000019	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	csa3	0	0	1	0
NZ_CWLB01000077	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000104	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000028	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000112	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000042	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000098	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000085	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000058	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000067	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000008	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000029	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000060	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000024	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000062	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000032	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000041	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	cas3	0	0	0	0
NZ_CWLB01000014	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000061	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000016	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000074	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000111	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000115	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000078	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000097	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	1 crisprs	cas8b2,cas7,cas5,cas3,cas2	2	11	0	0
NZ_CWLB01000015	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000083	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000118	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000009	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000089	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	DinG	0	0	0	0
NZ_CWLB01000075	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000048	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	cas3	0	0	0	0
NZ_CWLB01000137	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000135	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000025	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000106	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000010	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000090	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000117	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_CWLB01000065	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000136	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000084	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000088	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000131	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000068	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000130	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000133	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000099	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000141	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000092	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000125	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000138	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000116	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000113	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000039	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000030	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000095	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000110	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	cas3	0	0	0	0
NZ_CWLB01000037	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000091	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000105	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000064	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000122	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000143	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000126	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000128	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	1
NZ_CWLB01000129	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000142	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000027	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000013	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	DinG	0	0	0	0
NZ_CWLB01000069	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	csa3	0	0	0	0
NZ_CWLB01000073	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000063	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000012	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000134	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000114	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000120	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000031	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000057	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000001	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000005	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_CWLB01000034	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_CWLB01000093	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000109	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000070	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000045	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	WYL	0	0	0	0
NZ_CWLB01000121	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000007	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000081	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000055	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000036	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000021	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000123	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000050	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000087	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000047	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000071	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000079	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000086	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000103	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000107	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000006	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000026	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	1 crisprs	NA	0	3	0	0
NZ_CWLB01000101	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000046	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000108	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000051	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000076	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000017	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	0	0
NZ_CWLB01000043	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000003	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000002	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000059	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000049	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_CWLB01000035	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000082	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	WYL	0	0	0	0
NZ_CWLB01000053	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_CWLB01000066	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	1 crisprs	NA	0	0	0	0
NZ_CWLB01000022	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000033	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000011	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000038	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	casR	0	0	0	0
NZ_CWLB01000023	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000072	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000052	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000096	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000080	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000127	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000100	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_CWLB01000020	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000140	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	cas6	0	0	0	0
NZ_CWLB01000054	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_CWLB01000056	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000102	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_CWLB01000132	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000044	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000124	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000018	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWLB01000004	Listeria monocytogenes isolate LM12, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 18673

Listeria_phage(100.0%)

terminase,holin,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_140442712.1\|0_641_+\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	3.7e-115	92.0
WP_023552450.1\|655_2215_+	hypothetical protein	A0A0B5D0A6	Listeria_phage	3.1e-293	97.3
WP_039380729.1\|2219_3263_+	hypothetical protein	A0A0B5D111	Listeria_phage	1.6e-195	97.4
WP_003744996.1\|3358_3913_+	hypothetical protein	A8ATU9	Listeria_phage	1.1e-88	99.5
WP_015987427.1\|3935_4808_+	F420-dependent oxidoreductase	A8ATV0	Listeria_phage	1.2e-161	100.0
WP_172425835.1\|4821_4989_+	hypothetical protein	A8ATV1	Listeria_phage	1.7e-11	100.0
WP_012951937.1\|4989_5343_+	hypothetical protein	A8ATV2	Listeria_phage	7.6e-62	100.0
WP_015987430.1\|5342_5708_+	hypothetical protein	A8ATV3	Listeria_phage	4.4e-65	100.0
WP_015987407.1\|5697_6015_+	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	9.9e-53	100.0
WP_003725064.1\|6011_6383_+	hypothetical protein	A8ATV5	Listeria_phage	8.5e-64	100.0
WP_015987408.1\|6387_7074_+	Ig domain-containing protein	A8ATV6	Listeria_phage	9.4e-117	100.0
WP_015987409.1\|7129_7561_+	hypothetical protein	A8ATV7	Listeria_phage	9.6e-75	100.0
WP_072225507.1\|7557_7869_+	hypothetical protein	A8ATV8	Listeria_phage	1.2e-42	98.9
WP_072225508.1\|7873_12673_+\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	99.7
WP_003731724.1\|12669_14238_+\|tail	phage tail family protein	A8ATW0	Listeria_phage	4.7e-305	99.6
WP_072225509.1\|14250_16416_+\|tail	phage tail protein	A8ATW1	Listeria_phage	0.0e+00	94.3
WP_003722523.1\|16454_16820_+	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
WP_003722522.1\|16832_17114_+\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
WP_003733663.1\|17113_17959_+	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	2.7e-137	94.7
WP_072233453.1\|17999_18673_-	DUF3825 domain-containing protein	A8ATW5	Listeria_phage	1.7e-123	99.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CWLB01000019

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1700 : 9544

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722604.1\|1700_2672_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003722605.1\|2679_3648_-	YvcK family protein	A1IMD5	Streptococcus_phage	6.7e-68	43.3
WP_003722606.1\|3649_4525_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_033918280.1\|4632_6363_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	3.0e-175	54.0
WP_003734087.1\|6404_7466_-	galactose mutarotase	NA	NA	NA	NA
WP_009924988.1\|7482_8466_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.1e-52	38.4
WP_003722610.1\|8584_9544_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CWLB01000125

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CWLB01000005

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

18217 : 26503

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722243.1\|18217_18784_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9
WP_003722244.1\|18780_19830_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.0e-61	43.2
WP_003722245.1\|19848_21276_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_003722246.1\|21260_23480_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.6e-160	41.4
WP_003722247.1\|23472_24156_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003722248.1\|24159_24405_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003722249.1\|24416_25130_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	2.7e-42	38.7
WP_003722250.1\|25210_26503_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.2e-17	32.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CWLB01000097

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CWLB01000097_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CWLB01000097_1

6074-7918

Unclear

I-A

Consensus_repeat	Method
ATTTACATTTCATAATAAGTAGTTAAAAC	PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	CRT

28 spacers

cas2,cas3,cas5,cas7,cas8b2

The CRISPR arrays of NZ_CWLB01000097_1

>merge|NZ_CWLB01000097|1|6074-7918|PILER-CR,CRISPRCasFinder,CRT
GTTTTAACTACTTATTATGAAATGTAAATAAAGACCTTCGATTTCATTCTCACTTTCCAGTTAATGTTTTAACTACTTATTATGAAATGTAAATTTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGACGTTTTAACTACTTATTATGAAATGTAAATGCTGGTAAATTTGGCGGAACTAATCGTACTGAAATAGTTTTAACTACTTATTATGAAATGTAAATACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCAGTTTTAACTACTTATTATGAAATGTAAATTATAGTCCCCATATCCATCTGCTATTATCCTCCACGTTTTAACTACTTATTATGAAATGTAAATCGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAAGTTTTAACTACTTATTATGAAATGTAAATACGTTGGACAACGAGGTGAGTATGATATGACTCAAATGTTTTAACTACTTATTATGAAATGTAAATGCGGAATGCGAAGTTGTTATATATAACTTATCTCGCGTTTTAACTACTTATTATGAAATGTAAATTCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATGGTTTTAACTACTTATTATGAAATGTAAATGTGCATATCTCCTATATTCATGGCTGTATATGTGTGTTTTAACTACTTATTATGAAATGTAAATCTGGTTACTCAACTGGCGACAGTAATACACCTCAATGTTTTAACTACTTATTATGAAATGTAAATTTTGGATAGGTTGTTTCTGATAAATAGGTTCACGGTTTTAACTACTTATTATGAAATGTAAATAAGTCTACTTGGATTTAGCTCTACACCTGCAACATGAGTTTTAACTACTTATTATGAAATGTAAATAGAAAAAAAACATCTTTCCAATTTGTTGTTTTGCGTTTTAACTACTTATTATGAAATGTAAATAGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTAGTTTTAACTACTTATTATGAAATGTAAATTATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGAGTTTTAACTACTTATTATGAAATGTAAATCTCATAAGGATTTCGAGGCGGGTTAAACGACATGTAGTTTTAACTACTTATTATGAAATGTAAATGCTTTTTTCAACAATTTTATCACCAGATGTCATTAGTTTTAACTACTTATTATGAAATGTAAATTGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTCGTTTTAACTACTTATTATGAAATGTAAATAAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGGGTTTTAACTACTTATTATGAAATGTAAATGTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTTGTTTTAACTACTTATTATGAAATGTAAATTGTTATCTCCTGTGATGTAAAATAACCCTTCTATCGTTTTAACTACTTATTATGAAATGTAAATTAATACAAAATATTCATAACTCCTACATCATTATATAGTTTTAACTACTTATTATGAAATGTAAATTTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTCGTTTTAACTACTTATTATGAAATGTAAATACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATATGTTTTAACTACTTATTATGAAATGTAAATCAAAACAGAGAACGCGTGTTCATTATCGGACATCTTAGTTTTAACTACTTATTATGAAATGTAAATTTTTGAAATATGAGGACTTAGAAAATGAAAAAAATGTTTTAACTACTTATTATGAAATGTAAATAAAAACTATGCAATTAGCAAAGTGATTTTATGTAATTGTTTTAACTACTTATTATGAAATATAAAT

>NZ_CWLB01000097|1|1|6074-7918|PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	GCTGGTAAATTTGGCGGAACTAATCGTACTGAAATA
GTTTTAACTACTTATTATGAAATGTAAAT	ACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAGTCCCCATATCCATCTGCTATTATCCTCCAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT

>NZ_CWLB01000097|1|1|6074-7918|CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	GCTGGTAAATTTGGCGGAACTAATCGTACTGAAATA
GTTTTAACTACTTATTATGAAATGTAAAT	ACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAGTCCCCATATCCATCTGCTATTATCCTCCAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT

>NZ_CWLB01000097|1|1|6074-7918|CRT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	GCTGGTAAATTTGGCGGAACTAATCGTACTGAAATA
GTTTTAACTACTTATTATGAAATGTAAAT	ACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAGTCCCCATATCCATCTGCTATTATCCTCCAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT

Protein	Function_ID	Function_description	E-value
NZ_CWLB01000097.1\|WP_003721306.1\|1414_2284_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.33672e-55
NZ_CWLB01000097.1\|WP_031668875.1\|3111_5295_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.29289e-60
NZ_CWLB01000097.1\|WP_003721307.1\|2261_3044_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.37797e-23
NZ_CWLB01000097.1\|WP_140442715.1\|0_1425_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	5.33513e-26
NZ_CWLB01000097.1\|WP_003721310.1\|5597_5876_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.1393e-30

>NZ_CWLB01000097.1|WP_003721310.1|5597_5876_+|CRISPR-associated-endonuclease-Cas2
MYVILIYDISIENGGAKVWRNVFKICKKYLTHVQKSVFEGEITPALLVKLRMELDKYIRDDQDSVIVFSSRQQRWLEKEFWGLTDEKTSNFF
>NZ_CWLB01000097.1|WP_031668875.1|3111_5295_+|CRISPR-associated-helicase/endonuclease-Cas3
MHKYLAKSNPEETIQEHTDNLLKNYQRLKKLYPAVEIDWYLLELVCLLHDLGKMNLLFQTKLGNASGKGKEIPHGYLSVAFVPDSKLEEMGYSEDEIKVVYQAIARHHERKYDFSDSEWKKEIIKLEEQWAGFIYSQLGGNAEYSSEVEMLYFYPGSRIFEGNSAADAETFKKYVLLKGLLNRIDFAASGGIDVELENDFLMDSMEVQLAHFKAENPEADWNALQKYMMQHQNENIVVIAETGMGKTEAGLLWLGNNKGFFTLPLRAAINAIYERITKNIVTTNQAERVGLLHSETYSQYLLHEGNAEMDIDEYYTRTRQMSLPITICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLILGLSYIDKFGGKFCIMTATLPGIVTDLLLENGVDFVQPEEKFVSSRIRHSMEMVHTEIESEFIKPFFNNNRILVICNTISKAKKIYSELKEHFQGEEIHLIHSQFIKRDRSAKEKAIFKDGQKDSTKKCIWVATQVVEASLDIDFDLLFTELSDVNGLFQRMGRCYRNRALDVDTNVYVFDGGAKVCSGIGTFIDKLIFVNSKTILNEHAGVLTEEKKMELVEQVYSTEALSGSEFYNDLIDKLNYVKAFESYLMNKADVRMRFRNINSVSVIPEEVWQDNAEEINSYFVTLRKTSKEISTKEKIIARTNLAEFMVSIPDYLYKKGESVVREINRYESVIEFKCGYSSDVGVFMR
>NZ_CWLB01000097.1|WP_003721307.1|2261_3044_+|type-I-B-CRISPR-associated-protein-Cas5
MLIMKAIRVRLWQDLVNFKKPTSFQLKETYPLPPYSTVIGMVHTLCGFTSYHEMKISIQGKYFSKVNDLATRYEFKNGMTYDASRHQIKVDKYGVSRGVSTVELLVDLELLLHIIPEDPSLVPIIEKAFREPIEFPSLGRREDIATIQKVEVVDVEKRQPKKSTEISDGYNAYVPISLTENNSVHFKSHESSVGRDKLLGTRYLLTEKYERVNHGTEKAPKFFRKWRKKDVIYSSRIFVSKKDVFFFDEDDYLVFIEEEE
>NZ_CWLB01000097.1|WP_003721306.1|1414_2284_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIIFQAESANYGESLGNISSLKKISRNNGDQYTYISRQAIRYNLMDQIGEKEAPVKAEGGGDKKVIQFLSEATITDFPELDFFGYLKTEKGSGGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKLNENMNIAQAEIHKSYYRYTITIDLDQIGIDGEIALDNKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNIVDVADNNIVIKNIKDLLTYEDIKENTRVGIIDGQFANSDEVKVELKAESVPAFFNDIKGKIDAYYESN
>NZ_CWLB01000097.1|WP_140442715.1|0_1425_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
VALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLLKQTKFIDPYLDYKTSFLDPVIDYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CWLB01000097_1	1.26\|7723\|37\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7723-7759	37	NZ_CWLB01000026.1	39985-40021	0	1.0
NZ_CWLB01000097_1	1.6\|6428\|36\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	6428-6463	36	NZ_CWLB01000125.1	1016-1051	1	0.972

1. spacer 1.26|7723|37|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to position: 39985-40021, mismatch: 0, identity: 1.0

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgcgtgttcattatcggacatctta	Protospacer
*************************************

2. spacer 1.6|6428|36|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to position: 1016-1051, mismatch: 1, identity: 0.972

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgatttttcgtagcccaattgctaaa	Protospacer
************.***********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CWLB01000097_1	1.11\|6753\|36\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	6753-6788	36	NC_003216	Listeria phage A118, complete genome	18563-18598	0	1.0
NZ_CWLB01000097_1	1.11\|6753\|36\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	6753-6788	36	AJ242593	Bacteriophage A118 complete genome	18563-18598	0	1.0
NZ_CWLB01000097_1	1.15\|7010\|34\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7010-7043	34	NC_003216	Listeria phage A118, complete genome	19172-19205	0	1.0
NZ_CWLB01000097_1	1.15\|7010\|34\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7010-7043	34	AJ242593	Bacteriophage A118 complete genome	19172-19205	0	1.0
NZ_CWLB01000097_1	1.6\|6428\|36\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	6428-6463	36	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	60125-60160	1	0.972
NZ_CWLB01000097_1	1.6\|6428\|36\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	6428-6463	36	NC_009812	Listeria phage B025, complete genome	27503-27538	1	0.972
NZ_CWLB01000097_1	1.25\|7658\|36\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7658-7693	36	NC_021539	Listeria phage LP-030-2, complete genome	14044-14079	1	0.972
NZ_CWLB01000097_1	1.25\|7658\|36\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7658-7693	36	AJ312240	Bacteriophage PSA complete genome	14022-14057	1	0.972
NZ_CWLB01000097_1	1.26\|7723\|37\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7723-7759	37	KY705255	Streptococcus phage P0095, complete genome	33666-33702	1	0.973
NZ_CWLB01000097_1	1.26\|7723\|37\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7723-7759	37	KY705251	Streptococcus phage P0091, complete genome	32778-32814	1	0.973
NZ_CWLB01000097_1	1.26\|7723\|37\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7723-7759	37	KX879643	Streptococcus phage CHPC1151, complete genome	31697-31733	1	0.973
NZ_CWLB01000097_1	1.26\|7723\|37\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7723-7759	37	MK202161	Streptococcus phage CHPC1282, complete genome	32484-32520	1	0.973
NZ_CWLB01000097_1	1.26\|7723\|37\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7723-7759	37	KY705252	Streptococcus phage P0092, complete genome	31845-31881	1	0.973
NZ_CWLB01000097_1	1.26\|7723\|37\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7723-7759	37	MH937506	Streptococcus phage CHPC1148, complete genome	35552-35588	1	0.973
NZ_CWLB01000097_1	1.26\|7723\|37\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7723-7759	37	KY705253	Streptococcus phage P0093, complete genome	32631-32667	1	0.973
NZ_CWLB01000097_1	1.26\|7723\|37\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7723-7759	37	KY705254	Streptococcus phage P0094, complete genome	31034-31070	1	0.973
NZ_CWLB01000097_1	1.6\|6428\|36\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	6428-6463	36	KJ094023	Listeria phage LP-101, complete genome	27001-27036	2	0.944
NZ_CWLB01000097_1	1.17\|7138\|36\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7138-7173	36	KP399678	Listeria phage vB_LmoS_293, complete genome	1049-1084	2	0.944
NZ_CWLB01000097_1	1.26\|7723\|37\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7723-7759	37	MN689509	Lactococcus phage CHPC1175, complete genome	29544-29580	2	0.946
NZ_CWLB01000097_1	1.26\|7723\|37\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7723-7759	37	MK448735	Streptococcus phage Javan349, complete genome	11483-11519	2	0.946
NZ_CWLB01000097_1	1.1\|6103\|36\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	6103-6138	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	228347-228382	3	0.917
NZ_CWLB01000097_1	1.16\|7073\|36\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7073-7108	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	41996-42031	3	0.917
NZ_CWLB01000097_1	1.16\|7073\|36\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7073-7108	36	KJ094023	Listeria phage LP-101, complete genome	32760-32795	5	0.861
NZ_CWLB01000097_1	1.14\|6947\|34\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	6947-6980	34	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1764851-1764884	6	0.824
NZ_CWLB01000097_1	1.27\|7789\|35\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7789-7823	35	MN694189	Marine virus AFVG_250M578, complete genome	47879-47913	6	0.829
NZ_CWLB01000097_1	1.14\|6947\|34\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	6947-6980	34	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	39302-39335	9	0.735
NZ_CWLB01000097_1	1.18\|7203\|35\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7203-7237	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	491525-491559	9	0.743
NZ_CWLB01000097_1	1.27\|7789\|35\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7789-7823	35	MK448625	Streptococcus satellite phage Javan738, complete genome	5960-5994	9	0.743
NZ_CWLB01000097_1	1.27\|7789\|35\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7789-7823	35	MK448449	Streptococcus satellite phage Javan356, complete genome	4490-4524	9	0.743
NZ_CWLB01000097_1	1.27\|7789\|35\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7789-7823	35	MK448636	Streptococcus satellite phage Javan749, complete genome	6112-6146	9	0.743
NZ_CWLB01000097_1	1.27\|7789\|35\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7789-7823	35	NZ_CP045037	Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence	34734-34768	9	0.743
NZ_CWLB01000097_1	1.27\|7789\|35\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7789-7823	35	NZ_CP018177	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence	11325-11359	9	0.743
NZ_CWLB01000097_1	1.27\|7789\|35\|NZ_CWLB01000097\|PILER-CR,CRISPRCasFinder,CRT	7789-7823	35	NZ_CP018181	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence	63608-63642	9	0.743

1. spacer 1.11|6753|36|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

2. spacer 1.11|6753|36|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

3. spacer 1.15|7010|34|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

4. spacer 1.15|7010|34|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

5. spacer 1.6|6428|36|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 1, identity: 0.972

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgatttttcgtagcccaattgctaaa	Protospacer
************.***********************

6. spacer 1.6|6428|36|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.972

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgatttttcgtagcccaattgctaaa	Protospacer
************.***********************

7. spacer 1.25|7658|36|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.972

acgtttgcggtagttttaccgggcacggtcaaatat	CRISPR spacer
acgttcgcggtagttttaccgggcacggtcaaatat	Protospacer
*****.******************************

8. spacer 1.25|7658|36|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 1, identity: 0.972

acgtttgcggtagttttaccgggcacggtcaaatat	CRISPR spacer
acgttcgcggtagttttaccgggcacggtcaaatat	Protospacer
*****.******************************

9. spacer 1.26|7723|37|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to KY705255 (Streptococcus phage P0095, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

10. spacer 1.26|7723|37|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to KY705251 (Streptococcus phage P0091, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

11. spacer 1.26|7723|37|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to KX879643 (Streptococcus phage CHPC1151, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

12. spacer 1.26|7723|37|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to MK202161 (Streptococcus phage CHPC1282, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

13. spacer 1.26|7723|37|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to KY705252 (Streptococcus phage P0092, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

14. spacer 1.26|7723|37|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to MH937506 (Streptococcus phage CHPC1148, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

15. spacer 1.26|7723|37|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to KY705253 (Streptococcus phage P0093, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

16. spacer 1.26|7723|37|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to KY705254 (Streptococcus phage P0094, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

17. spacer 1.6|6428|36|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.944

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgattttttgtagcccaattgctaaa	Protospacer
************.*****.*****************

18. spacer 1.17|7138|36|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 2, identity: 0.944

ctcataaggatttcgaggcgggttaaacgacatgta	CRISPR spacer
ctcataaggattgcgaggcgggttaaatgacatgta	Protospacer
************ **************.********

19. spacer 1.26|7723|37|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to MN689509 (Lactococcus phage CHPC1175, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaaccgagaacgtgtgttcattatcggacatctta	Protospacer
****** *******.**********************

20. spacer 1.26|7723|37|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to MK448735 (Streptococcus phage Javan349, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgggtgttcattgtcggacatctta	Protospacer
************** *********.************

21. spacer 1.1|6103|36|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 3, identity: 0.917

aaagaccttcgatttcattctcactttccagttaat	CRISPR spacer
gaaaaccttcgatttcattcttactttccagttaat	Protospacer
.**.*****************.**************

22. spacer 1.16|7073|36|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 3, identity: 0.917

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
tataaaatattgtccaatgtgtggaaggagtttggg	Protospacer
************.********.*************.

23. spacer 1.16|7073|36|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 5, identity: 0.861

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
cattgaattttgcccaatgtgcggaaggagcttgga	Protospacer
.** .*** *********************.*****

24. spacer 1.14|6947|34|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.824

agaaaaaaaacatctttccaatttgttgttttgc	CRISPR spacer
agcaaaaaaacatctttcctatttgttttatcac	Protospacer
** **************** ******* * *..*

25. spacer 1.27|7789|35|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 6, identity: 0.829

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
taataaaaaatgagggcttagaaaatgaaaaaatt	Protospacer
*  *.*** ******.***************** *

26. spacer 1.14|6947|34|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

agaaaaaaaacatctttccaatttgttgttttgc-----	CRISPR spacer
aagaaaaaaacatatttccaatt-----ttttccaaaaa	Protospacer
*..********** *********     **** *

27. spacer 1.18|7203|35|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 9, identity: 0.743

gcttttttcaacaattttatcaccagatgtcatta	CRISPR spacer
agttttttcaacaattttatgaacagataattttt	Protospacer
. ****************** * *****. . **

28. spacer 1.27|7789|35|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to MK448625 (Streptococcus satellite phage Javan738, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

29. spacer 1.27|7789|35|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

30. spacer 1.27|7789|35|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtctgaactatgaggacttagaaagtgaagacctg	Protospacer
 *.**** ****************.****.*

31. spacer 1.27|7789|35|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

32. spacer 1.27|7789|35|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

33. spacer 1.27|7789|35|NZ_CWLB01000097|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_CWLB01000034

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

193 : 7615

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014601906.1\|193_1750_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.9e-17	28.1
WP_003721512.1\|1878_2283_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_003721511.1\|2342_2651_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_033918355.1\|2663_3488_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	9.7e-68	52.9
WP_003721509.1\|3499_4990_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_010989660.1\|5198_6212_-	glycosyltransferase	A0A1V0SAH6	Catovirus	7.9e-11	32.0
WP_003721507.1\|6226_7210_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	3.1e-12	35.3
WP_003721506.1\|7231_7615_-	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_CWLB01000049

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

615 : 12585

Listeria_phage(87.5%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072233449.1\|615_5541_+\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	93.8
WP_031644613.1\|5528_7178_+\|tail	phage tail family protein	A0A059T682	Listeria_phage	0.0e+00	99.5
WP_012951555.1\|7190_9485_+\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	0.0e+00	94.0
WP_031644619.1\|9474_10569_+	hypothetical protein	A0A059T7R4	Listeria_phage	2.2e-184	87.9
WP_012951557.1\|10616_10919_+	hypothetical protein	A0A059T5E6	Listeria_phage	1.7e-38	93.0
WP_012951558.1\|10918_11176_+\|holin	phage holin	A8ATB7	Listeria_phage	3.2e-25	69.0
WP_014930134.1\|11175_12018_+	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	9.5e-127	81.6
WP_140442710.1\|12121_12585_+	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	1.5e-46	59.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

8. NZ_CWLB01000066

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CWLB01000066_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CWLB01000066_1

30788-31070

Orphan

I-A

Consensus_repeat	Method
ATTTACATTTCAAAATAAGTAACTAAAAC	PILER-CR
GTTTTAGTTACTTATTTTGAAATGTAAAT	CRISPRCasFinder
GTTTTAGTTACTTATTTTGAAATGTAAAT	CRT

4 spacers

The CRISPR arrays of NZ_CWLB01000066_1

>merge|NZ_CWLB01000066|1|30788-31070|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGTTACTTATTTTGAAATGTAAATAAACAGAAATGAAAGATGGTGAAGAAGTCCTTACCGTTTTAGTTACTTATTTTGAAATGTAAATTTTTTTAAGGCAAGTGTCATCGTTTCTAATCCGCGTTTTAGTTACTTATTTTGAAATGTAAATCTAGAACAAAAGAAAAATCATGAGGGATATTTACGTTTTAGTTACTTATTTTGAAATGTAAATGGTTTTGAATGCTGGTGGTGATAGTCCTAATGAAGGTTTTAGTTACTTATTATGAAATGTAAAT

>NZ_CWLB01000066|1|1|30788-31070|PILER-CR
GTTTTAGTTACTTATTTTGAAATGTAAAT	AAACAGAAATGAAAGATGGTGAAGAAGTCCTTACC
GTTTTAGTTACTTATTTTGAAATGTAAAT	TTTTTTAAGGCAAGTGTCATCGTTTCTAATCCGC
GTTTTAGTTACTTATTTTGAAATGTAAAT	CTAGAACAAAAGAAAAATCATGAGGGATATTTAC
GTTTTAGTTACTTATTTTGAAATGTAAAT	GGTTTTGAATGCTGGTGGTGATAGTCCTAATGAAG
GTTTTAGTTACTTATTATGAAATGTAAAT

>NZ_CWLB01000066|1|1|30788-31070|CRISPRCasFinder
GTTTTAGTTACTTATTTTGAAATGTAAAT	AAACAGAAATGAAAGATGGTGAAGAAGTCCTTACC
GTTTTAGTTACTTATTTTGAAATGTAAAT	TTTTTTAAGGCAAGTGTCATCGTTTCTAATCCGC
GTTTTAGTTACTTATTTTGAAATGTAAAT	CTAGAACAAAAGAAAAATCATGAGGGATATTTAC
GTTTTAGTTACTTATTTTGAAATGTAAAT	GGTTTTGAATGCTGGTGGTGATAGTCCTAATGAAG
GTTTTAGTTACTTATTATGAAATGTAAAT

>NZ_CWLB01000066|1|1|30788-31070|CRT
GTTTTAGTTACTTATTTTGAAATGTAAAT	AAACAGAAATGAAAGATGGTGAAGAAGTCCTTACC
GTTTTAGTTACTTATTTTGAAATGTAAAT	TTTTTTAAGGCAAGTGTCATCGTTTCTAATCCGC
GTTTTAGTTACTTATTTTGAAATGTAAAT	CTAGAACAAAAGAAAAATCATGAGGGATATTTAC
GTTTTAGTTACTTATTTTGAAATGTAAAT	GGTTTTGAATGCTGGTGGTGATAGTCCTAATGAAG
GTTTTAGTTACTTATTATGAAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CWLB01000066.1\|WP_003721289.1\|25292_25760_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_CWLB01000066.1\|WP_003721301.1\|35994_36426_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CWLB01000066.1\|WP_003721302.1\|36472_37903_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_CWLB01000066.1\|WP_003721298.1\|32852_33212_-\|Lin0512-family-protein	unknown	unknown	gnl\|CDD\|131113
NZ_CWLB01000066.1\|WP_003721291.1\|26185_26836_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_CWLB01000066.1\|WP_003721288.1\|24662_25265_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
NZ_CWLB01000066.1\|WP_003721299.1\|33218_33677_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_CWLB01000066.1\|WP_003721286.1\|21839_22490_+\|transaldolase	unknown	unknown	gnl\|CDD\|223254
NZ_CWLB01000066.1\|WP_003721295.1\|29613_30549_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CWLB01000066.1\|WP_003721293.1\|27894_28188_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_CWLB01000066.1\|WP_003721290.1\|25776_26175_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CWLB01000066.1\|WP_003721300.1\|34058_35894_+\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NZ_CWLB01000066.1\|WP_003721294.1\|28202_29474_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_CWLB01000066.1\|WP_009930754.1\|31461_32040_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CWLB01000066.1\|WP_003721292.1\|26832_27879_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_CWLB01000066.1\|WP_003721297.1\|32147_32828_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_CWLB01000066.1\|WP_003721303.1\|38023_38839_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CWLB01000066.1\|WP_003721287.1\|22598_24659_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234

Protein	Function_ID	Function_description	E-value
NZ_CWLB01000066.1\|WP_003721289.1\|25292_25760_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	3.45565e-37
NZ_CWLB01000066.1\|WP_003721291.1\|26185_26836_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	4.74405e-108
NZ_CWLB01000066.1\|WP_003721302.1\|36472_37903_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	1.43469e-99
NZ_CWLB01000066.1\|WP_003721298.1\|32852_33212_-\|Lin0512-family-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	5.62162e-67
NZ_CWLB01000066.1\|WP_003721288.1\|24662_25265_+\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	1.67992e-75
NZ_CWLB01000066.1\|WP_003721286.1\|21839_22490_+\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	1.40072e-62
NZ_CWLB01000066.1\|WP_003721295.1\|29613_30549_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	2.38027e-153
NZ_CWLB01000066.1\|WP_003721293.1\|27894_28188_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
NZ_CWLB01000066.1\|WP_003721299.1\|33218_33677_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	8.31646e-13
NZ_CWLB01000066.1\|WP_003721300.1\|34058_35894_+\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	1.95498e-119
NZ_CWLB01000066.1\|WP_003721294.1\|28202_29474_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
NZ_CWLB01000066.1\|WP_003721301.1\|35994_36426_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NZ_CWLB01000066.1\|WP_003721292.1\|26832_27879_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
NZ_CWLB01000066.1\|WP_003721297.1\|32147_32828_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	7.71833e-60
NZ_CWLB01000066.1\|WP_003721303.1\|38023_38839_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NZ_CWLB01000066.1\|WP_003721287.1\|22598_24659_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	2.1337e-80

>NZ_CWLB01000066.1|WP_003721295.1|29613_30549_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSSIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NZ_CWLB01000066.1|WP_003721294.1|28202_29474_+|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>NZ_CWLB01000066.1|WP_003721293.1|27894_28188_+|PTS-sugar-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>NZ_CWLB01000066.1|WP_003721292.1|26832_27879_+|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>NZ_CWLB01000066.1|WP_003721291.1|26185_26836_+|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
>NZ_CWLB01000066.1|WP_003721290.1|25776_26175_+|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>NZ_CWLB01000066.1|WP_003721289.1|25292_25760_+|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQDKEKLLTEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>NZ_CWLB01000066.1|WP_003721288.1|24662_25265_+|SIS-domain-containing-protein
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVETIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>NZ_CWLB01000066.1|WP_003721287.1|22598_24659_+|BglG-family-transcription-antiterminator
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADINDSNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>NZ_CWLB01000066.1|WP_003721286.1|21839_22490_+|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPSILVKEKCNRQTAINRILELTDKQVFVQTVGFTYEEILADARMLLTMFGKDKIAIKIPAHEAGTNVIDTLKKEDKTIQILGTAIYSADQAITAALAGADFVAPYVNRMSAANIDPFKEISQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK
>NZ_CWLB01000066.1|WP_009930754.1|31461_32040_+|hypothetical-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTITIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>NZ_CWLB01000066.1|WP_003721297.1|32147_32828_+|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLFFPESLNVFHWHQDTFALPTGSTRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
>NZ_CWLB01000066.1|WP_003721298.1|32852_33212_-|Lin0512-family-protein
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>NZ_CWLB01000066.1|WP_003721299.1|33218_33677_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTSAGKELENELGDAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NZ_CWLB01000066.1|WP_003721300.1|34058_35894_+|lmo0514-family-class-1-internalin
MKKALKLFLAMICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSARLSITEDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVNPVPPTPEVKPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>NZ_CWLB01000066.1|WP_003721301.1|35994_36426_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_CWLB01000066.1|WP_003721302.1|36472_37903_-|CapA-family-protein
MKRRTYVIITGLVLIFIAGAFWITNSTNQSDQKATQTEPLKKTSPANVKTISSEAKKTLNSLASSGADKASISDLNQLIKELKSYPVEKNDSGAYLQNLTACLEAVKSYTTGKADEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTIINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIKGGVTEYTYFDPF
>NZ_CWLB01000066.1|WP_003721303.1|38023_38839_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

9. NZ_CWLB01000117

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

153 : 7767

Listeria_phage(91.67%)

portal,protease,tail,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003731652.1\|153_468_+	HNH endonuclease	A8ATF8	Listeria_phage	3.2e-56	98.1
WP_031646261.1\|516_873_+\|terminase	P27 family phage terminase small subunit	A8AT94	Listeria_phage	2.6e-46	98.0
WP_023552366.1\|869_2513_+\|terminase	terminase large subunit	A8AT95	Listeria_phage	0.0e+00	98.7
WP_023548926.1\|2524_3655_+\|portal	phage portal protein	A8AT96	Listeria_phage	1.7e-203	93.1
WP_012951546.1\|3651_4368_+\|protease	Clp protease ClpP	A0A1S5SFF8	Streptococcus_phage	9.3e-67	59.0
WP_012951547.1\|4394_5546_+\|capsid	phage major capsid protein	A0A059T678	Listeria_phage	3.1e-213	99.5
WP_012951548.1\|5552_5723_+	hypothetical protein	A0A059T7Y2	Listeria_phage	6.3e-22	100.0
WP_009934007.1\|5732_6032_+	hypothetical protein	A8ATA0	Listeria_phage	9.9e-47	98.0
WP_009934006.1\|6015_6381_+	hypothetical protein	A0A059T6F2	Listeria_phage	1.6e-62	96.7
WP_012951550.1\|6377_6779_+	hypothetical protein	A0A059T5F3	Listeria_phage	2.1e-68	100.0
WP_009931623.1\|6775_7159_+	hypothetical protein	A0A059T681	Listeria_phage	6.1e-65	96.1
WP_009931624.1\|7179_7767_+\|tail	phage tail protein	A0A059T7Y4	Listeria_phage	4.0e-108	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

10. NZ_CWLB01000026

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CWLB01000026_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CWLB01000026_1

39763-39985

Orphan

I-A

Consensus_repeat	Method
ATTTACATTTCATAATAAGTAGTTAAAAC	CRISPRCasFinder
ATTTCATAATAAGTAGTTAAAACA	CRT
ATTTACATTTCATAATAAGTAGTTAAAACA	PILER-CR

3 spacers

The CRISPR arrays of NZ_CWLB01000026_1

>merge|NZ_CWLB01000026|1|39763-39985|CRISPRCasFinder,CRT,PILER-CR
TTTATGATTTCATAATAAGTAGTTAAAACATTACTAGAAGAAGATGGTTTAATTGGCTCGTTAATTTATATTTCATAATAAGTAGTTAAAACAATTACATAAAATCACTTTGCTAATTGCATAGTTTTTATTTACATTTCATAATAAGTAGTTAAAACATTTTTTTCATTTTCTAAGTCCTCATATTTCAAAAATTTACATTTCATAATAAGTAGTTAAAACT

>NZ_CWLB01000026|1|1|39763-39984|CRISPRCasFinder
TTTATGATTTCATAATAAGTAGTTAAAAC	ATTACTAGAAGAAGATGGTTTAATTGGCTCGTTA
ATTTATATTTCATAATAAGTAGTTAAAAC	AATTACATAAAATCACTTTGCTAATTGCATAGTTTTT
ATTTACATTTCATAATAAGTAGTTAAAAC	ATTTTTTTCATTTTCTAAGTCCTCATATTTCAAAA
ATTTACATTTCATAATAAGTAGTTAAAAC

>NZ_CWLB01000026|1|1|39769-39985|CRT
ATTTCATAATAAGTAGTTAAAACA	TTACTAGAAGAAGATGGTTTAATTGGCTCGTTAATTTAT
ATTTCATAATAAGTAGTTAAAACA	ATTACATAAAATCACTTTGCTAATTGCATAGTTTTTATTTAC
ATTTCATAATAAGTAGTTAAAACA	TTTTTTTCATTTTCTAAGTCCTCATATTTCAAAAATTTAC
ATTTCATAATAAGTAGTTAAAACT

>NZ_CWLB01000026|1|1|39826-39985|PILER-CR
ATTTATATTTCATAATAAGTAGTTAAAACA	ATTACATAAAATCACTTTGCTAATTGCATAGTTTTT
ATTTACATTTCATAATAAGTAGTTAAAACA	TTTTTTTCATTTTCTAAGTCCTCATATTTCAAAA
ATTTACATTTCATAATAAGTAGTTAAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CWLB01000026.1\|WP_061112174.1\|30478_31810_-\|DUF1254-domain-containing-protein	unknown	unknown	gnl\|CDD\|227659
NZ_CWLB01000026.1\|WP_003721317.1\|33772_34216_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CWLB01000026.1\|WP_003721316.1\|34321_35074_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CWLB01000026.1\|WP_003721315.1\|35275_36592_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NZ_CWLB01000026.1\|WP_057171662.1\|37759_39175_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CWLB01000026.1\|WP_003721314.1\|36623_37628_-\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CWLB01000026.1\|WP_003721311.1\|39321_39690_+\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NZ_CWLB01000026.1\|WP_003721320.1\|29691_30432_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CWLB01000026.1\|WP_031671650.1\|32065_33727_+\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_CWLB01000026.1\|WP_061112175.1\|27986_29462_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CWLB01000026.1\|WP_061112174.1\|30478_31810_-\|DUF1254-domain-containing-protein	gnl\|CDD\|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	8.07616e-73
NZ_CWLB01000026.1\|WP_003721316.1\|34321_35074_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	5.24308e-64
NZ_CWLB01000026.1\|WP_003721315.1\|35275_36592_+\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_CWLB01000026.1\|WP_057171662.1\|37759_39175_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.87135e-79
NZ_CWLB01000026.1\|WP_003721314.1\|36623_37628_-\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.07552e-20
NZ_CWLB01000026.1\|WP_003721311.1\|39321_39690_+\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	1.10012e-41
NZ_CWLB01000026.1\|WP_003721320.1\|29691_30432_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	2.56491e-51
NZ_CWLB01000026.1\|WP_031671650.1\|32065_33727_+\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.06019e-147

>NZ_CWLB01000026.1|WP_003721311.1|39321_39690_+|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGMAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVVVLLV
>NZ_CWLB01000026.1|WP_057171662.1|37759_39175_-|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGENGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGIPMVMMPAQTNGLNQLPRKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK
>NZ_CWLB01000026.1|WP_003721314.1|36623_37628_-|ROK-family-transcriptional-regulator
MAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKLIRDLVENEEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLLGEPEFVEDMSGEDLDITALKRNTKDIICAFPKISCVVIGVPGIEIGGKLRAMDFPLLLNVQLRETLEAEVNLPVLVETDTNAAILGYKNRPVKEENIVGLYYPERFPPGAGLLMNGEILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMVLLTMSFYDPETIVLYTNFYFGQKDFMEELKEELKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI
>NZ_CWLB01000026.1|WP_003721315.1|35275_36592_+|6-phospho-beta-glucosidase
MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAGREKLEIVGNLAKRMVKKAGVNMEIHLTLDREEALKDADFVTTQLRVGLLDARVKDERIPNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVLRYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTKDVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAEHGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQIVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAEAAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK
>NZ_CWLB01000026.1|WP_003721316.1|34321_35074_-|MurR/RpiR-family-transcriptional-regulator
MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVSTTTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQIQNAVEILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLSDKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEMYQEANITSQLPALYTIENIAREIRTQLDKEKM
>NZ_CWLB01000026.1|WP_003721317.1|33772_34216_-|hypothetical-protein
MYSNMKEKVVFTLIMCSLMILCMSSYNIFLENGIGTDSLLIVLKAFVPFLFIGFLLDFFVVGKIVYRLHALLVSEDASKFKKIIMMQLLMVTFMCVLMSTLSLIVNQGEWSHLGILILRNYFVALFLQIFIVSPFVRLISPRIFALL
>NZ_CWLB01000026.1|WP_031671650.1|32065_33727_+|SulP-family-inorganic-anion-transporter
MFKHILLSLNGYKISYLRNDVISGVGVAALTIPVAMGYAQVAGLPPIYGLYASFLPVIAYVIFASSPQLIFGIDATASAITGSIILGTAGLAAGSKEAIALAPILAFFCAIFLVLFSVLKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGDSFFSSLGIIFGQFFQSNWISFAMGVVTVIIVITCKKVIPKIPMSLVVLVLGTMAAYFFKLDQYNVDIVGKIPVGFPSLALPDFGASSWALAIGGGLVCAIATFAGSLLPSESFAMRNKYTIDDNRELFAYGVSNFVAAFSGCSPASASVSRTAANEQFRGKTQMVSIVAATIIALIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKVSRREATVWIVAALGTLLVGVIFGVLLGIFLSFINVVSRSMKTPIAILGVIEGRHGYFDLKRKPEAKPIPNVVIYRYSASLFFGNFNKFADGLKEAVQDDTKLVIFEASAIINIDTTATESMKDLLKWLDDKGIEYYFADLIDHLKTSFRKHDLGYLIDNGYTKKTVEDALDAYYAEHK
>NZ_CWLB01000026.1|WP_061112174.1|30478_31810_-|DUF1254-domain-containing-protein
MATQKNLVDLATKAYIYGFPFIFNTQQIERYVTVGIGGTKQVPFNNFTHASRLAEPSDKFVSVNNDTIYSNAPIDVSAGPVVLSVPDTSGRYYVLQFVDAWSNNFAYVGKRATGTSAGKFLLTPPNWNGDVPADMIEIKFPTNIGIIIGRLACDGEADLPTVRELQEQLKITPLNEGKEVDGFPEYDRSLGKELAFFEQLRVYMAQFPPAERDLVKQESFAPIGLMEKGVSPYSNPSEELKNALIEGAKAGLANIKKATTNFKSENGWGLTQHLFDYNADFFEIGTKKSLDWVIEDREEAYIIRAVSAITALWGNHGYEAVYLMTWTDTDGKALNGKNKYTLELNPIPPVDSFWSITMYDLPEYFLCENPINRYSIGDRTPGIQYNDDGGITIVVSKDEPTDPKERANWLPAPDAEFRPMFRLYNPQQPLVDGSYHFSGFEKK
>NZ_CWLB01000026.1|WP_003721320.1|29691_30432_+|MerR-family-transcriptional-regulator
MQIKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSSNPYEEEARKLWGDKVVEKANEKVNNMSEKEQLTLKESFDAEFRHLASVRKLTPESEEAQLEIDHFFHYLNDTHGNIYSLEAFASLGEMYVNDERFTKNIDQFGDGLSQFLQEAMTIYAKNK
>NZ_CWLB01000026.1|WP_061112175.1|27986_29462_-|hypothetical-protein
MIRKVKSISMWLWHHVTPQIFAVICVFIITIIALFMPPYIGMADNGDFFRIFSSNGLFVNNTNYDALQFGHFVKEFGIYQYFNENQVAIYSSQSIFIQMALLLNKLFWSTTVFDVRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYVVAALTVFIFADTAYTAYFNSFFSEGLILIMMLYISAGFLLLYQHKYNDYAMLGLIFVASLILITAKQQNAPIAVVIAVCGILVFFIRKNRAFRISAAATFLVIFLSGVVMYAFIPGEFVTINQYQTMTRGVLLDSENPEKSLEEMGMNSEFALLKGTNFYQKYKMIDLDSKLMEKEFYSNYNFVTVLSYYLENPKQFGKMLDLSAQNSFSIRPFEMGNFEKATGYKFKEKTHFFSAYSDVKEKFAPAKFTFLILWALVFLICYGVSAFKHFREKNIRGTLLFDLIVLLIGSGFAVILVTIVGDGEADLTKHNFLFNVCFDLTMLIGAASLLEVYLKKRGERNA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CWLB01000026_1	1.3\|39921\|35\|NZ_CWLB01000026\|CRISPRCasFinder	39921-39955	35	MN694189	Marine virus AFVG_250M578, complete genome	47879-47913	6	0.829
NZ_CWLB01000026_1	1.8\|39922\|34\|NZ_CWLB01000026\|PILER-CR	39922-39955	34	MN694189	Marine virus AFVG_250M578, complete genome	47880-47913	6	0.824
NZ_CWLB01000026_1	1.8\|39922\|34\|NZ_CWLB01000026\|PILER-CR	39922-39955	34	MK448625	Streptococcus satellite phage Javan738, complete genome	5960-5993	8	0.765
NZ_CWLB01000026_1	1.8\|39922\|34\|NZ_CWLB01000026\|PILER-CR	39922-39955	34	MK448449	Streptococcus satellite phage Javan356, complete genome	4490-4523	8	0.765
NZ_CWLB01000026_1	1.8\|39922\|34\|NZ_CWLB01000026\|PILER-CR	39922-39955	34	MK448636	Streptococcus satellite phage Javan749, complete genome	6112-6145	8	0.765
NZ_CWLB01000026_1	1.8\|39922\|34\|NZ_CWLB01000026\|PILER-CR	39922-39955	34	NZ_CP045037	Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence	34734-34767	8	0.765
NZ_CWLB01000026_1	1.8\|39922\|34\|NZ_CWLB01000026\|PILER-CR	39922-39955	34	NZ_CP018177	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence	11326-11359	8	0.765
NZ_CWLB01000026_1	1.8\|39922\|34\|NZ_CWLB01000026\|PILER-CR	39922-39955	34	NZ_CP018181	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence	63608-63641	8	0.765
NZ_CWLB01000026_1	1.8\|39922\|34\|NZ_CWLB01000026\|PILER-CR	39922-39955	34	NZ_KX274135	Staphylococcus arlettae strain SA-01 plasmid pSA-01, complete sequence	30674-30707	8	0.765
NZ_CWLB01000026_1	1.8\|39922\|34\|NZ_CWLB01000026\|PILER-CR	39922-39955	34	NC_020183	Staphylococcus aureus subsp. aureus ST398 plasmid pUR3912, isolate C3912 complete sequence	4238-4271	8	0.765
NZ_CWLB01000026_1	1.3\|39921\|35\|NZ_CWLB01000026\|CRISPRCasFinder	39921-39955	35	MK448625	Streptococcus satellite phage Javan738, complete genome	5960-5994	9	0.743
NZ_CWLB01000026_1	1.3\|39921\|35\|NZ_CWLB01000026\|CRISPRCasFinder	39921-39955	35	MK448449	Streptococcus satellite phage Javan356, complete genome	4490-4524	9	0.743
NZ_CWLB01000026_1	1.3\|39921\|35\|NZ_CWLB01000026\|CRISPRCasFinder	39921-39955	35	MK448636	Streptococcus satellite phage Javan749, complete genome	6112-6146	9	0.743
NZ_CWLB01000026_1	1.3\|39921\|35\|NZ_CWLB01000026\|CRISPRCasFinder	39921-39955	35	NZ_CP045037	Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence	34734-34768	9	0.743
NZ_CWLB01000026_1	1.3\|39921\|35\|NZ_CWLB01000026\|CRISPRCasFinder	39921-39955	35	NZ_CP018177	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence	11325-11359	9	0.743
NZ_CWLB01000026_1	1.3\|39921\|35\|NZ_CWLB01000026\|CRISPRCasFinder	39921-39955	35	NZ_CP018181	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence	63608-63642	9	0.743
NZ_CWLB01000026_1	1.6\|39922\|40\|NZ_CWLB01000026\|CRT	39922-39961	40	MN694189	Marine virus AFVG_250M578, complete genome	47880-47919	10	0.75
NZ_CWLB01000026_1	1.8\|39922\|34\|NZ_CWLB01000026\|PILER-CR	39922-39955	34	NZ_CP016746	Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence	15683-15716	10	0.706

1. spacer 1.3|39921|35|NZ_CWLB01000026|CRISPRCasFinder matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 6, identity: 0.829

atttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
aattttttcattttctaagccctcattttttatta	Protospacer
* *****************.****** ***.*  *

2. spacer 1.8|39922|34|NZ_CWLB01000026|PILER-CR matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 6, identity: 0.824

tttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
attttttcattttctaagccctcattttttatta	Protospacer
 *****************.****** ***.*  *

3. spacer 1.8|39922|34|NZ_CWLB01000026|PILER-CR matches to MK448625 (Streptococcus satellite phage Javan738, complete genome) position: , mismatch: 8, identity: 0.765

tttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
aggtcttcactttctaagtcctcatagttcatac	Protospacer
   *.****.**************** **** *

4. spacer 1.8|39922|34|NZ_CWLB01000026|PILER-CR matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 8, identity: 0.765

tttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
aggtcttcactttctaagtcctcatagttcatac	Protospacer
   *.****.**************** **** *

5. spacer 1.8|39922|34|NZ_CWLB01000026|PILER-CR matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 8, identity: 0.765

tttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
aggtcttcactttctaagtcctcatagttcagac	Protospacer
   *.****.**************** ****.*

6. spacer 1.8|39922|34|NZ_CWLB01000026|PILER-CR matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

tttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
ataacttcatttactaagtccttatatttcttaa	Protospacer
 *  .******* *********.*******  **

7. spacer 1.8|39922|34|NZ_CWLB01000026|PILER-CR matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 8, identity: 0.765

tttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
ataacttcatttactaagtccttatatttcttaa	Protospacer
 *  .******* *********.*******  **

8. spacer 1.8|39922|34|NZ_CWLB01000026|PILER-CR matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 8, identity: 0.765

tttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
ataacttcatttactaagtccttatatttcttaa	Protospacer
 *  .******* *********.*******  **

9. spacer 1.8|39922|34|NZ_CWLB01000026|PILER-CR matches to NZ_KX274135 (Staphylococcus arlettae strain SA-01 plasmid pSA-01, complete sequence) position: , mismatch: 8, identity: 0.765

tttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
tttatttcattttctaattcctcacacattacat	Protospacer
*** ************* ******.*. *.* *

10. spacer 1.8|39922|34|NZ_CWLB01000026|PILER-CR matches to NC_020183 (Staphylococcus aureus subsp. aureus ST398 plasmid pUR3912, isolate C3912 complete sequence) position: , mismatch: 8, identity: 0.765

tttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
tttatttcattttctaattcctcacacattacat	Protospacer
*** ************* ******.*. *.* *

11. spacer 1.3|39921|35|NZ_CWLB01000026|CRISPRCasFinder matches to MK448625 (Streptococcus satellite phage Javan738, complete genome) position: , mismatch: 9, identity: 0.743

atttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
caggtcttcactttctaagtcctcatagttcatac	Protospacer
    *.****.**************** **** *

12. spacer 1.3|39921|35|NZ_CWLB01000026|CRISPRCasFinder matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 9, identity: 0.743

atttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
caggtcttcactttctaagtcctcatagttcatac	Protospacer
    *.****.**************** **** *

13. spacer 1.3|39921|35|NZ_CWLB01000026|CRISPRCasFinder matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 9, identity: 0.743

atttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
caggtcttcactttctaagtcctcatagttcagac	Protospacer
    *.****.**************** ****.*

14. spacer 1.3|39921|35|NZ_CWLB01000026|CRISPRCasFinder matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

atttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
cataacttcatttactaagtccttatatttcttaa	Protospacer
  *  .******* *********.*******  **

15. spacer 1.3|39921|35|NZ_CWLB01000026|CRISPRCasFinder matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 9, identity: 0.743

atttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
cataacttcatttactaagtccttatatttcttaa	Protospacer
  *  .******* *********.*******  **

16. spacer 1.3|39921|35|NZ_CWLB01000026|CRISPRCasFinder matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 9, identity: 0.743

atttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
cataacttcatttactaagtccttatatttcttaa	Protospacer
  *  .******* *********.*******  **

17. spacer 1.6|39922|40|NZ_CWLB01000026|CRT matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 10, identity: 0.75

tttttttcattttctaagtcctcatatttcaaaaatttac	CRISPR spacer
attttttcattttctaagccctcattttttattaaacaat	Protospacer
 *****************.****** ***.*  ** . *.

18. spacer 1.8|39922|34|NZ_CWLB01000026|PILER-CR matches to NZ_CP016746 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence) position: , mismatch: 10, identity: 0.706

tttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
aaatcttcattttctaagtgctcaaatttttcag	Protospacer
   *.************** **** ****.  *.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

11. NZ_CWLB01000004

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

14464 : 25191

Listeria_phage(40.0%)

holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009924934.1\|14464_15193_-	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGH1	Paenibacillus_phage	4.3e-35	42.5
WP_031669178.1\|15173_15596_-\|holin	holin family protein	Q2I8E7	Bacillus_phage	1.5e-27	46.3
WP_003721754.1\|15614_16151_-	hypothetical protein	NA	NA	NA	NA
WP_003721753.1\|16147_16627_-	hypothetical protein	NA	NA	NA	NA
WP_003721752.1\|16641_17217_-	hypothetical protein	NA	NA	NA	NA
WP_015453957.1\|17231_17531_-	hypothetical protein	NA	NA	NA	NA
WP_057171695.1\|17520_18657_-\|tail	phage tail protein	A0A0B5D0G3	Listeria_phage	1.7e-46	33.5
WP_057171696.1\|18666_19485_-\|tail	phage tail family protein	Q9T1A6	Listeria_phage	4.4e-44	35.5
WP_061112172.1\|19481_21350_-	hypothetical protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_072217178.1\|21336_21741_-	phenylalanine racemase	A0A097PAX1	Streptococcus_pyogenes_phage	2.4e-19	43.5
WP_003721745.1\|21782_22085_-	hypothetical protein	NA	NA	NA	NA
WP_003721744.1\|22132_22645_-\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003733902.1\|22657_23047_-	DUF5072 family protein	NA	NA	NA	NA
WP_003732220.1\|23324_23741_-	hypothetical protein	NA	NA	NA	NA
WP_003732219.1\|23752_24181_-	hypothetical protein	A8ATZ8	Listeria_phage	3.0e-12	45.7
WP_003721740.1\|24397_24733_+	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003721739.1\|24738_25191_+	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

12. NZ_CWLB01000053

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

61 : 9350

Listeria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072225506.1\|61_622_-	DUF1642 domain-containing protein	A8ATY9	Listeria_phage	7.5e-72	75.3
WP_003722560.1\|618_1431_-	DNA adenine methylase	Q8W5X3	Listeria_phage	4.8e-152	95.6
WP_072225505.1\|1427_2360_-	DnaD domain-containing protein	A8ATY7	Listeria_phage	4.3e-165	97.7
WP_010991173.1\|2379_3195_-	recombinase RecT	A8ATY6	Listeria_phage	3.5e-150	98.9
WP_077947174.1\|3197_4157_-	YqaJ viral recombinase family protein	A8ATY5	Listeria_phage	1.8e-177	99.1
WP_003725088.1\|4392_4581_-	hypothetical protein	Q9T175	Listeria_phage	6.9e-22	79.0
WP_031644321.1\|4682_4889_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003733682.1\|4878_5409_-	hypothetical protein	A0A0B5D173	Listeria_phage	2.7e-79	89.6
WP_003733683.1\|5532_6309_-	phage antirepressor Ant	A0A0B5D0I2	Listeria_phage	6.9e-140	97.7
WP_003733684.1\|6372_6570_+	hypothetical protein	Q9T179	Listeria_phage	4.0e-20	96.0
WP_003722567.1\|6571_6853_-	hypothetical protein	A8ATX8	Listeria_phage	1.8e-37	95.7
WP_003733686.1\|6878_7163_-	hypothetical protein	A0A0B5D168	Listeria_phage	4.5e-41	85.1
WP_003733687.1\|7174_7369_-	hypothetical protein	A0A059T6E5	Listeria_phage	1.4e-25	95.3
WP_003733688.1\|7389_7599_-	helix-turn-helix domain-containing protein	A0A0B5D0D3	Listeria_phage	3.5e-30	95.6
WP_003724014.1\|7764_8187_+	helix-turn-helix transcriptional regulator	A0A0B5CYL9	Listeria_phage	7.7e-69	98.6
WP_003724015.1\|8202_8628_+	ImmA/IrrE family metallo-endopeptidase	A0A0B5CTZ7	Listeria_phage	2.2e-76	100.0
WP_003724016.1\|8642_9350_+	hypothetical protein	A0A0B5CTT6	Listeria_phage	2.8e-124	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

13. NZ_CWLB01000102

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 5827

Listeria_phage(83.33%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072233470.1\|0_951_-\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	1.2e-170	91.9
WP_003733717.1\|916_1642_-	helix-turn-helix domain-containing protein	A0A0B5CTX0	Listeria_phage	4.4e-80	68.5
WP_003733718.1\|1685_1913_-	hypothetical protein	A0A0B5CTV3	Listeria_phage	2.4e-32	94.7
WP_025370640.1\|2188_2623_-	hypothetical protein	A8ASQ1	Listeria_phage	3.1e-57	76.4
WP_003733720.1\|2687_3185_-	Holliday junction resolvase RecU	A0A1L2JY30	Aeribacillus_phage	1.8e-32	49.3
WP_025370641.1\|3174_3357_-	hypothetical protein	A8ASP6	Listeria_phage	3.6e-15	79.3
WP_025370642.1\|3378_3861_-	single-stranded DNA-binding protein	A8ASP5	Listeria_phage	1.6e-70	83.8
WP_003733723.1\|3861_4116_-	hypothetical protein	A0A059T5G2	Listeria_phage	3.4e-40	92.8
WP_009930870.1\|4294_4831_-	hypothetical protein	D9J0I6	Brochothrix_phage	2.3e-09	31.7
WP_009930868.1\|4827_4995_-	hypothetical protein	NA	NA	NA	NA
WP_014601509.1\|4995_5205_-	hypothetical protein	A8ATE0	Listeria_phage	1.7e-32	100.0
WP_014601510.1\|5201_5603_-	hypothetical protein	A8ATD9	Listeria_phage	2.6e-74	100.0
WP_014929526.1\|5680_5827_-	hypothetical protein	A8ATZ0	Listeria_phage	1.7e-20	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

14. NZ_CWLB01000128

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr_ID: NZ_CWLB01000128.1|WP_003731276.1|1629_1881_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CWLB01000128.1|WP_003731276.1|1629_1881_+|hypothetical-protein

1629_1881_+

83 aa aa

AcrIIA12

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3641\|WP_003731276.1\|AcrIIA12\|II-A\|Verified\|Listeria-monocytogenes	1.0	1	1.0

15. NZ_CWLB01000100

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

422 : 8435

Listeria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014601407.1\|422_740_-	VRR-NUC domain-containing protein	A8ATF4	Listeria_phage	9.2e-51	95.1
WP_072226836.1\|1073_3362_-	DNA primase	A8ATF3	Listeria_phage	0.0e+00	94.1
WP_039153564.1\|3384_3867_-	DUF669 domain-containing protein	A8ATF2	Listeria_phage	9.3e-87	98.8
WP_072215795.1\|3889_5131_-	DEAD/DEAH box helicase	A8ATF1	Listeria_phage	1.5e-213	95.8
WP_039153570.1\|5209_5899_-	AAA family ATPase	R4IDY8	Listeria_phage	6.8e-123	91.7
WP_039153573.1\|5911_6391_-	siphovirus Gp157 family protein	R4IBM0	Listeria_phage	1.9e-76	97.5
WP_015987318.1\|6392_6776_-	hypothetical protein	A8ATE8	Listeria_phage	2.5e-66	100.0
WP_162859693.1\|6772_6946_-	hypothetical protein	A8ATE7	Listeria_phage	1.5e-23	96.5
WP_023548953.1\|6978_7413_-	hypothetical protein	A8ATS7	Listeria_phage	2.5e-38	52.8
WP_154079741.1\|7409_7580_-	hypothetical protein	A0A059T654	Listeria_phage	2.4e-21	92.3
WP_025283119.1\|7606_7813_-	hypothetical protein	A0A059T6C7	Listeria_phage	1.7e-29	92.6
WP_072226835.1\|7809_8211_-	hypothetical protein	A8ATD9	Listeria_phage	1.1e-72	98.5
WP_014929526.1\|8288_8435_-	hypothetical protein	A8ATZ0	Listeria_phage	1.7e-20	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage