CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CWMY01000245	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000297	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000129	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000010	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000127	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000308	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000065	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000279	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000189	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000062	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000116	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000323	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000230	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000265	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000260	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000003	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000313	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000039	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000102	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000012	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000215	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000110	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000271	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000103	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000008	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000107	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	csa3	0	0	0	0
NZ_CWMY01000312	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000067	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000255	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000254	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000188	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000075	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000057	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000320	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000007	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000298	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000205	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000025	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000173	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000242	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000094	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000247	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000301	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000055	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000258	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000042	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000180	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000153	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000183	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000020	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000218	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000009	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000090	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000251	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000305	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000221	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000182	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000234	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000252	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000236	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000204	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000304	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000150	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000307	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000051	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000105	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000034	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	0	0
NZ_CWMY01000143	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000280	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000078	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000093	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000061	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000300	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	1
NZ_CWMY01000198	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000277	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000050	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000013	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000087	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000121	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000049	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	WYL	0	0	0	0
NZ_CWMY01000151	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000052	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000203	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000291	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_CWMY01000148	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000109	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000032	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000294	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000146	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000044	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000282	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000209	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000015	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000199	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000319	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000262	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000128	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000006	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	DinG	0	0	0	0
NZ_CWMY01000089	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	casR	0	0	0	0
NZ_CWMY01000287	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000227	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	cas3	0	0	0	0
NZ_CWMY01000137	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000152	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000169	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000079	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000132	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000011	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000233	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000066	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000220	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000063	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000019	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000175	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000030	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000041	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000053	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000311	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000033	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000185	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000156	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000104	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000040	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000058	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000060	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000114	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000302	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000027	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000136	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000138	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000024	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000264	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000202	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000318	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000108	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000243	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000201	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000165	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000268	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000241	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000054	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000163	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000192	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000179	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	cas6	0	0	0	0
NZ_CWMY01000035	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000326	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	1 crisprs	NA	0	14	0	0
NZ_CWMY01000122	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000091	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000270	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000077	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000257	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000226	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000043	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000118	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000184	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000162	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	cas3	0	0	0	0
NZ_CWMY01000086	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000237	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000269	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000100	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000026	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000314	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000167	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000316	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000031	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	DinG	0	0	0	0
NZ_CWMY01000046	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000322	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000217	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000126	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000225	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000120	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000210	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000250	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000261	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000085	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000239	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000321	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000125	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000172	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000056	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000289	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000275	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000080	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000135	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000325	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000168	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	cas3	0	0	0	0
NZ_CWMY01000306	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000315	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000176	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000324	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000159	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000048	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000072	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000238	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000281	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000214	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000115	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	1 crisprs	NA	0	1	0	0
NZ_CWMY01000253	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000098	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000197	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000158	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000028	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000286	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000092	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000160	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000310	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000134	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000069	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000249	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000101	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000171	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000068	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000196	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000095	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000018	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	cas3	0	0	0	0
NZ_CWMY01000328	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000023	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000190	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000016	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000038	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000327	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000248	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000106	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000232	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000071	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000149	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000296	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000139	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	1 crisprs	NA	0	1	0	0
NZ_CWMY01000157	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000187	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000278	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000117	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000076	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000193	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000064	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000014	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000133	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000224	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	WYL	0	0	0	0
NZ_CWMY01000299	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000161	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000228	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000266	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000112	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000174	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000022	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000200	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000288	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000211	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000295	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000096	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000222	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	cas5,cas7,cas8b2	0	0	0	0
NZ_CWMY01000186	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000059	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_CWMY01000317	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000004	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000195	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000207	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000216	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	csa3	0	0	0	0
NZ_CWMY01000212	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000181	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000119	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000036	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000284	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000097	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000130	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000081	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	csa3	0	0	0	0
NZ_CWMY01000285	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000145	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000070	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000140	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000231	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000099	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000246	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000084	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000017	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000178	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000170	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000208	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000074	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000263	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000292	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000229	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000029	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000142	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000244	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000123	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_CWMY01000273	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000037	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_CWMY01000155	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000219	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000194	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000235	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000272	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000001	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000303	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	1 crisprs	NA	1	0	0	0
NZ_CWMY01000073	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000045	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000164	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000141	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000206	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000290	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000259	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000223	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000083	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000283	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000166	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	WYL	0	0	0	0
NZ_CWMY01000213	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000088	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000293	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000111	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000191	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000131	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000276	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000144	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000021	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000113	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000082	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000177	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000002	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_CWMY01000147	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000124	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000267	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000005	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000274	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000154	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000240	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000309	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000256	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_CWMY01000047	Listeria monocytogenes isolate LM63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CWMY01000326_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CWMY01000326_1

4-1261

Orphan

I-A

Consensus_repeat	Method
ATTTACATTTCATAATAAGTAGTTAAAAC	PILER-CR
ATTTACATTTCATAATAAGTAGTTAAAAC	CRISPRCasFinder
ATTTACATTTCATAATAAGTAGTTAAAA	CRT

19 spacers

The CRISPR arrays of NZ_CWMY01000326_1

>merge|NZ_CWMY01000326|1|4-1261|PILER-CR,CRISPRCasFinder,CRT
ATTTACATTTCATAATAAGTAGTTAAAACGATAGAAGGGTTATTTTACATCACAGGAGATAACAATTTACATTTCATAATAAGTAGTTAAAACAAACAGCGACAAACGTTAGCTCGTCTAGTTATTGACATTTACATTTCATAATAAGTAGTTAAAACCCGTTCGCTCTGTAGAACAAAACTTCCCGGATTTCTTATTTACATTTCATAATAAGTAGTTAAAACGAAAAAAGCAGATACGGAAACAGGTGACACTGCTCAATTTACATTTCATAATAAGTAGTTAAAACTAATGACATCTGGTGATAAAATTGTTGAAAAAAGCATTTACATTTCATAATAAGTAGTTAAAACTACATGTCGTTTAACCCGCCTCGAAATCCTTATGAGATTTACATTTCATAATAAGTAGTTAAAACTCCAAACTCCTTCCGCACATTGGGCAATATTTTATAATTTACATTTCATAATAAGTAGTTAAAACTAAATTACTTTCGAACAATGCCGCTAACGCTTCTATTTACATTTCATAATAAGTAGTTAAAACGCAAAACAACAAATTGGAAAGATGTTTTTTTTCTATTTACATTTCATAATAAGTAGTTAAAACTCATGTTGCAGGTGTAGAGCTAAATCCAAGTAGACTTATTTACATTTCATAATAAGTAGTTAAAACCGTGAACCTATTTATCAGAAACAACCTATCCAAAATTTACATTTCATAATAAGTAGTTAAAACATTGAGGTGTATTACTGTCGCCAGTTGAGTAACCAGATTTACATTTCATAATAAGTAGTTAAAACACACATATACAGCCATGAATATAGGAGATATGCACATTTACATTTCATAATAAGTAGTTAAAACCATGACTCCCTTAACATGTGCAAACACCATTTAAGAATTTACATTTCATAATAAGTAGTTAAAACGCGAGATAAGTTATATATAACAACTTCGCATTCCGCATTTACATTTCATAATAAGTAGTTAAAACATTTGAGTCATATCATACTCACCTCGTTGTCCAACGTATTTACATTTCATAATAAGTAGTTAAAACTTTAGCAATTGGGCTACGAAAAACCAACGTGAAGCGATTTACATTTCATAATAAGTAGTTAAAACGTGGAGGATAATAGCAGATGGATATGGGGACTATAATTTACATTTCATAATAAGTAGTTAAAACTGGTAGGGGCGGGGCTTCTATATAAGGGCTAATATGTATTTACATTTCATAATAAGTAGTTAAAAC

>NZ_CWMY01000326|1|1|4-1261|PILER-CR
ATTTACATTTCATAATAAGTAGTTAAAAC	GATAGAAGGGTTATTTTACATCACAGGAGATAACA
ATTTACATTTCATAATAAGTAGTTAAAAC	AAACAGCGACAAACGTTAGCTCGTCTAGTTATTGAC
ATTTACATTTCATAATAAGTAGTTAAAAC	CCGTTCGCTCTGTAGAACAAAACTTCCCGGATTTCTT
ATTTACATTTCATAATAAGTAGTTAAAAC	GAAAAAAGCAGATACGGAAACAGGTGACACTGCTCA
ATTTACATTTCATAATAAGTAGTTAAAAC	TAATGACATCTGGTGATAAAATTGTTGAAAAAAGC
ATTTACATTTCATAATAAGTAGTTAAAAC	TACATGTCGTTTAACCCGCCTCGAAATCCTTATGAG
ATTTACATTTCATAATAAGTAGTTAAAAC	TCCAAACTCCTTCCGCACATTGGGCAATATTTTATA
ATTTACATTTCATAATAAGTAGTTAAAAC	TAAATTACTTTCGAACAATGCCGCTAACGCTTCT
ATTTACATTTCATAATAAGTAGTTAAAAC	GCAAAACAACAAATTGGAAAGATGTTTTTTTTCT
ATTTACATTTCATAATAAGTAGTTAAAAC	TCATGTTGCAGGTGTAGAGCTAAATCCAAGTAGACTT
ATTTACATTTCATAATAAGTAGTTAAAAC	CGTGAACCTATTTATCAGAAACAACCTATCCAAA
ATTTACATTTCATAATAAGTAGTTAAAAC	ATTGAGGTGTATTACTGTCGCCAGTTGAGTAACCAG
ATTTACATTTCATAATAAGTAGTTAAAAC	ACACATATACAGCCATGAATATAGGAGATATGCAC
ATTTACATTTCATAATAAGTAGTTAAAAC	CATGACTCCCTTAACATGTGCAAACACCATTTAAGA
ATTTACATTTCATAATAAGTAGTTAAAAC	GCGAGATAAGTTATATATAACAACTTCGCATTCCGC
ATTTACATTTCATAATAAGTAGTTAAAAC	ATTTGAGTCATATCATACTCACCTCGTTGTCCAACGT
ATTTACATTTCATAATAAGTAGTTAAAAC	TTTAGCAATTGGGCTACGAAAAACCAACGTGAAGCG
ATTTACATTTCATAATAAGTAGTTAAAAC	GTGGAGGATAATAGCAGATGGATATGGGGACTATA
ATTTACATTTCATAATAAGTAGTTAAAAC	TGGTAGGGGCGGGGCTTCTATATAAGGGCTAATATGT
ATTTACATTTCATAATAAGTAGTTAAAAC

>NZ_CWMY01000326|1|1|4-1261|CRISPRCasFinder
ATTTACATTTCATAATAAGTAGTTAAAAC	GATAGAAGGGTTATTTTACATCACAGGAGATAACA
ATTTACATTTCATAATAAGTAGTTAAAAC	AAACAGCGACAAACGTTAGCTCGTCTAGTTATTGAC
ATTTACATTTCATAATAAGTAGTTAAAAC	CCGTTCGCTCTGTAGAACAAAACTTCCCGGATTTCTT
ATTTACATTTCATAATAAGTAGTTAAAAC	GAAAAAAGCAGATACGGAAACAGGTGACACTGCTCA
ATTTACATTTCATAATAAGTAGTTAAAAC	TAATGACATCTGGTGATAAAATTGTTGAAAAAAGC
ATTTACATTTCATAATAAGTAGTTAAAAC	TACATGTCGTTTAACCCGCCTCGAAATCCTTATGAG
ATTTACATTTCATAATAAGTAGTTAAAAC	TCCAAACTCCTTCCGCACATTGGGCAATATTTTATA
ATTTACATTTCATAATAAGTAGTTAAAAC	TAAATTACTTTCGAACAATGCCGCTAACGCTTCT
ATTTACATTTCATAATAAGTAGTTAAAAC	GCAAAACAACAAATTGGAAAGATGTTTTTTTTCT
ATTTACATTTCATAATAAGTAGTTAAAAC	TCATGTTGCAGGTGTAGAGCTAAATCCAAGTAGACTT
ATTTACATTTCATAATAAGTAGTTAAAAC	CGTGAACCTATTTATCAGAAACAACCTATCCAAA
ATTTACATTTCATAATAAGTAGTTAAAAC	ATTGAGGTGTATTACTGTCGCCAGTTGAGTAACCAG
ATTTACATTTCATAATAAGTAGTTAAAAC	ACACATATACAGCCATGAATATAGGAGATATGCAC
ATTTACATTTCATAATAAGTAGTTAAAAC	CATGACTCCCTTAACATGTGCAAACACCATTTAAGA
ATTTACATTTCATAATAAGTAGTTAAAAC	GCGAGATAAGTTATATATAACAACTTCGCATTCCGC
ATTTACATTTCATAATAAGTAGTTAAAAC	ATTTGAGTCATATCATACTCACCTCGTTGTCCAACGT
ATTTACATTTCATAATAAGTAGTTAAAAC	TTTAGCAATTGGGCTACGAAAAACCAACGTGAAGCG
ATTTACATTTCATAATAAGTAGTTAAAAC	GTGGAGGATAATAGCAGATGGATATGGGGACTATA
ATTTACATTTCATAATAAGTAGTTAAAAC	TGGTAGGGGCGGGGCTTCTATATAAGGGCTAATATGT
ATTTACATTTCATAATAAGTAGTTAAAAC

>NZ_CWMY01000326|1|1|4-1260|CRT
ATTTACATTTCATAATAAGTAGTTAAAA	CGATAGAAGGGTTATTTTACATCACAGGAGATAACA
ATTTACATTTCATAATAAGTAGTTAAAA	CAAACAGCGACAAACGTTAGCTCGTCTAGTTATTGAC
ATTTACATTTCATAATAAGTAGTTAAAA	CCCGTTCGCTCTGTAGAACAAAACTTCCCGGATTTCTT
ATTTACATTTCATAATAAGTAGTTAAAA	CGAAAAAAGCAGATACGGAAACAGGTGACACTGCTCA
ATTTACATTTCATAATAAGTAGTTAAAA	CTAATGACATCTGGTGATAAAATTGTTGAAAAAAGC
ATTTACATTTCATAATAAGTAGTTAAAA	CTACATGTCGTTTAACCCGCCTCGAAATCCTTATGAG
ATTTACATTTCATAATAAGTAGTTAAAA	CTCCAAACTCCTTCCGCACATTGGGCAATATTTTATA
ATTTACATTTCATAATAAGTAGTTAAAA	CTAAATTACTTTCGAACAATGCCGCTAACGCTTCT
ATTTACATTTCATAATAAGTAGTTAAAA	CGCAAAACAACAAATTGGAAAGATGTTTTTTTTCT
ATTTACATTTCATAATAAGTAGTTAAAA	CTCATGTTGCAGGTGTAGAGCTAAATCCAAGTAGACTT
ATTTACATTTCATAATAAGTAGTTAAAA	CCGTGAACCTATTTATCAGAAACAACCTATCCAAA
ATTTACATTTCATAATAAGTAGTTAAAA	CATTGAGGTGTATTACTGTCGCCAGTTGAGTAACCAG
ATTTACATTTCATAATAAGTAGTTAAAA	CACACATATACAGCCATGAATATAGGAGATATGCAC
ATTTACATTTCATAATAAGTAGTTAAAA	CCATGACTCCCTTAACATGTGCAAACACCATTTAAGA
ATTTACATTTCATAATAAGTAGTTAAAA	CGCGAGATAAGTTATATATAACAACTTCGCATTCCGC
ATTTACATTTCATAATAAGTAGTTAAAA	CATTTGAGTCATATCATACTCACCTCGTTGTCCAACGT
ATTTACATTTCATAATAAGTAGTTAAAA	CTTTAGCAATTGGGCTACGAAAAACCAACGTGAAGCG
ATTTACATTTCATAATAAGTAGTTAAAA	CGTGGAGGATAATAGCAGATGGATATGGGGACTATA
ATTTACATTTCATAATAAGTAGTTAAAA	CTGGTAGGGGCGGGGCTTCTATATAAGGGCTAATATGT
ATTTACATTTCATAATAAGTAGTTAAAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CWMY01000326_1	1.8\|487\|34\|NZ_CWMY01000326\|PILER-CR,CRISPRCasFinder	487-520	34	NC_003216	Listeria phage A118, complete genome	19172-19205	0	1.0
NZ_CWMY01000326_1	1.8\|487\|34\|NZ_CWMY01000326\|PILER-CR,CRISPRCasFinder	487-520	34	AJ242593	Bacteriophage A118 complete genome	19172-19205	0	1.0
NZ_CWMY01000326_1	1.12\|742\|36\|NZ_CWMY01000326\|PILER-CR,CRISPRCasFinder	742-777	36	NC_003216	Listeria phage A118, complete genome	18563-18598	0	1.0
NZ_CWMY01000326_1	1.12\|742\|36\|NZ_CWMY01000326\|PILER-CR,CRISPRCasFinder	742-777	36	AJ242593	Bacteriophage A118 complete genome	18563-18598	0	1.0
NZ_CWMY01000326_1	1.27\|486\|35\|NZ_CWMY01000326\|CRT	486-520	35	NC_003216	Listeria phage A118, complete genome	19172-19206	0	1.0
NZ_CWMY01000326_1	1.27\|486\|35\|NZ_CWMY01000326\|CRT	486-520	35	AJ242593	Bacteriophage A118 complete genome	19172-19206	0	1.0
NZ_CWMY01000326_1	1.17\|1067\|36\|NZ_CWMY01000326\|PILER-CR,CRISPRCasFinder	1067-1102	36	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	60125-60160	1	0.972
NZ_CWMY01000326_1	1.17\|1067\|36\|NZ_CWMY01000326\|PILER-CR,CRISPRCasFinder	1067-1102	36	NC_009812	Listeria phage B025, complete genome	27503-27538	1	0.972
NZ_CWMY01000326_1	1.31\|741\|37\|NZ_CWMY01000326\|CRT	741-777	37	NC_003216	Listeria phage A118, complete genome	18563-18599	1	0.973
NZ_CWMY01000326_1	1.31\|741\|37\|NZ_CWMY01000326\|CRT	741-777	37	AJ242593	Bacteriophage A118 complete genome	18563-18599	1	0.973
NZ_CWMY01000326_1	1.6\|357\|36\|NZ_CWMY01000326\|PILER-CR,CRISPRCasFinder	357-392	36	KP399678	Listeria phage vB_LmoS_293, complete genome	1049-1084	2	0.944
NZ_CWMY01000326_1	1.17\|1067\|36\|NZ_CWMY01000326\|PILER-CR,CRISPRCasFinder	1067-1102	36	KJ094023	Listeria phage LP-101, complete genome	27001-27036	2	0.944
NZ_CWMY01000326_1	1.36\|1066\|37\|NZ_CWMY01000326\|CRT	1066-1102	37	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	60124-60160	2	0.946
NZ_CWMY01000326_1	1.36\|1066\|37\|NZ_CWMY01000326\|CRT	1066-1102	37	NC_009812	Listeria phage B025, complete genome	27502-27538	2	0.946
NZ_CWMY01000326_1	1.7\|422\|36\|NZ_CWMY01000326\|PILER-CR,CRISPRCasFinder	422-457	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	41996-42031	3	0.917
NZ_CWMY01000326_1	1.25\|356\|37\|NZ_CWMY01000326\|CRT	356-392	37	KP399678	Listeria phage vB_LmoS_293, complete genome	1048-1084	3	0.919
NZ_CWMY01000326_1	1.36\|1066\|37\|NZ_CWMY01000326\|CRT	1066-1102	37	KJ094023	Listeria phage LP-101, complete genome	27000-27036	3	0.919
NZ_CWMY01000326_1	1.26\|421\|37\|NZ_CWMY01000326\|CRT	421-457	37	MH341453	Listeria phage PSU-VKH-LP041, complete genome	41996-42032	4	0.892
NZ_CWMY01000326_1	1.7\|422\|36\|NZ_CWMY01000326\|PILER-CR,CRISPRCasFinder	422-457	36	KJ094023	Listeria phage LP-101, complete genome	32760-32795	5	0.861
NZ_CWMY01000326_1	1.9\|550\|34\|NZ_CWMY01000326\|PILER-CR,CRISPRCasFinder	550-583	34	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1764851-1764884	6	0.824
NZ_CWMY01000326_1	1.26\|421\|37\|NZ_CWMY01000326\|CRT	421-457	37	KJ094023	Listeria phage LP-101, complete genome	32760-32796	6	0.838
NZ_CWMY01000326_1	1.28\|549\|35\|NZ_CWMY01000326\|CRT	549-583	35	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1764851-1764885	6	0.829
NZ_CWMY01000326_1	1.5\|293\|35\|NZ_CWMY01000326\|PILER-CR,CRISPRCasFinder	293-327	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	491525-491559	9	0.743
NZ_CWMY01000326_1	1.9\|550\|34\|NZ_CWMY01000326\|PILER-CR,CRISPRCasFinder	550-583	34	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	39302-39335	9	0.735
NZ_CWMY01000326_1	1.24\|292\|36\|NZ_CWMY01000326\|CRT	292-327	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	491524-491559	9	0.75

1. spacer 1.8|487|34|NZ_CWMY01000326|PILER-CR,CRISPRCasFinder matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

taaattactttcgaacaatgccgctaacgcttct	CRISPR spacer
taaattactttcgaacaatgccgctaacgcttct	Protospacer
**********************************

2. spacer 1.8|487|34|NZ_CWMY01000326|PILER-CR,CRISPRCasFinder matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

taaattactttcgaacaatgccgctaacgcttct	CRISPR spacer
taaattactttcgaacaatgccgctaacgcttct	Protospacer
**********************************

3. spacer 1.12|742|36|NZ_CWMY01000326|PILER-CR,CRISPRCasFinder matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

attgaggtgtattactgtcgccagttgagtaaccag	CRISPR spacer
attgaggtgtattactgtcgccagttgagtaaccag	Protospacer
************************************

4. spacer 1.12|742|36|NZ_CWMY01000326|PILER-CR,CRISPRCasFinder matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

attgaggtgtattactgtcgccagttgagtaaccag	CRISPR spacer
attgaggtgtattactgtcgccagttgagtaaccag	Protospacer
************************************

5. spacer 1.27|486|35|NZ_CWMY01000326|CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

ctaaattactttcgaacaatgccgctaacgcttct	CRISPR spacer
ctaaattactttcgaacaatgccgctaacgcttct	Protospacer
***********************************

6. spacer 1.27|486|35|NZ_CWMY01000326|CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

ctaaattactttcgaacaatgccgctaacgcttct	CRISPR spacer
ctaaattactttcgaacaatgccgctaacgcttct	Protospacer
***********************************

7. spacer 1.17|1067|36|NZ_CWMY01000326|PILER-CR,CRISPRCasFinder matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 1, identity: 0.972

tttagcaattgggctacgaaaaaccaacgtgaagcg	CRISPR spacer
tttagcaattgggctacgaaaaatcaacgtgaagcg	Protospacer
***********************.************

8. spacer 1.17|1067|36|NZ_CWMY01000326|PILER-CR,CRISPRCasFinder matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.972

tttagcaattgggctacgaaaaaccaacgtgaagcg	CRISPR spacer
tttagcaattgggctacgaaaaatcaacgtgaagcg	Protospacer
***********************.************

9. spacer 1.31|741|37|NZ_CWMY01000326|CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.973

cattgaggtgtattactgtcgccagttgagtaaccag	CRISPR spacer
tattgaggtgtattactgtcgccagttgagtaaccag	Protospacer
.************************************

10. spacer 1.31|741|37|NZ_CWMY01000326|CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.973

cattgaggtgtattactgtcgccagttgagtaaccag	CRISPR spacer
tattgaggtgtattactgtcgccagttgagtaaccag	Protospacer
.************************************

11. spacer 1.6|357|36|NZ_CWMY01000326|PILER-CR,CRISPRCasFinder matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 2, identity: 0.944

tacatgtcgtttaacccgcctcgaaatccttatgag	CRISPR spacer
tacatgtcatttaacccgcctcgcaatccttatgag	Protospacer
********.************** ************

12. spacer 1.17|1067|36|NZ_CWMY01000326|PILER-CR,CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.944

tttagcaattgggctacgaaaaaccaacgtgaagcg	CRISPR spacer
tttagcaattgggctacaaaaaatcaacgtgaagcg	Protospacer
*****************.*****.************

13. spacer 1.36|1066|37|NZ_CWMY01000326|CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 2, identity: 0.946

ctttagcaattgggctacgaaaaaccaacgtgaagcg	CRISPR spacer
atttagcaattgggctacgaaaaatcaacgtgaagcg	Protospacer
 ***********************.************

14. spacer 1.36|1066|37|NZ_CWMY01000326|CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.946

ctttagcaattgggctacgaaaaaccaacgtgaagcg	CRISPR spacer
atttagcaattgggctacgaaaaatcaacgtgaagcg	Protospacer
 ***********************.************

15. spacer 1.7|422|36|NZ_CWMY01000326|PILER-CR,CRISPRCasFinder matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 3, identity: 0.917

tccaaactccttccgcacattgggcaatattttata	CRISPR spacer
cccaaactccttccacacattggacaatattttata	Protospacer
.*************.********.************

16. spacer 1.25|356|37|NZ_CWMY01000326|CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 3, identity: 0.919

ctacatgtcgtttaacccgcctcgaaatccttatgag	CRISPR spacer
atacatgtcatttaacccgcctcgcaatccttatgag	Protospacer
 ********.************** ************

17. spacer 1.36|1066|37|NZ_CWMY01000326|CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 3, identity: 0.919

ctttagcaattgggctacgaaaaaccaacgtgaagcg	CRISPR spacer
atttagcaattgggctacaaaaaatcaacgtgaagcg	Protospacer
 *****************.*****.************

18. spacer 1.26|421|37|NZ_CWMY01000326|CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 4, identity: 0.892

ctccaaactccttccgcacattgggcaatattttata	CRISPR spacer
tcccaaactccttccacacattggacaatattttata	Protospacer
..*************.********.************

19. spacer 1.7|422|36|NZ_CWMY01000326|PILER-CR,CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 5, identity: 0.861

tccaaactccttccgcacattgggcaatattttata	CRISPR spacer
tccaagctccttccgcacattgggcaaaattcaatg	Protospacer
*****.********************* ***. **.

20. spacer 1.9|550|34|NZ_CWMY01000326|PILER-CR,CRISPRCasFinder matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.824

gcaaaacaacaaattggaaagatgttttttttct	CRISPR spacer
gtgataaaacaaataggaaagatgtttttttgct	Protospacer
*..* * ******* **************** **

21. spacer 1.26|421|37|NZ_CWMY01000326|CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 6, identity: 0.838

ctccaaactccttccgcacattgggcaatattttata	CRISPR spacer
ttccaagctccttccgcacattgggcaaaattcaatg	Protospacer
.*****.********************* ***. **.

22. spacer 1.28|549|35|NZ_CWMY01000326|CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.829

cgcaaaacaacaaattggaaagatgttttttttct	CRISPR spacer
cgtgataaaacaaataggaaagatgtttttttgct	Protospacer
**..* * ******* **************** **

23. spacer 1.5|293|35|NZ_CWMY01000326|PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 9, identity: 0.743

taatgacatctggtgataaaattgttgaaaaaagc	CRISPR spacer
aaaaattatctgttcataaaattgttgaaaaaact	Protospacer
 ** . .***** * ****************** .

24. spacer 1.9|550|34|NZ_CWMY01000326|PILER-CR,CRISPRCasFinder matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

-----gcaaaacaacaaattggaaagatgttttttttct	CRISPR spacer
tttttggaaa-----aaattggaaatatgtttttttctt	Protospacer
     * ***     ********** **********..*

25. spacer 1.24|292|36|NZ_CWMY01000326|CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 9, identity: 0.75

ctaatgacatctggtgataaaattgttgaaaaaagc	CRISPR spacer
caaaaattatctgttcataaaattgttgaaaaaact	Protospacer
* ** . .***** * ****************** .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CWMY01000291

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

522 : 2994

Listeria_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003724016.1\|522_1230_-	hypothetical protein	A0A0B5CTT6	Listeria_phage	2.8e-124	100.0
WP_003724015.1\|1244_1670_-	ImmA/IrrE family metallo-endopeptidase	A0A0B5CTZ7	Listeria_phage	2.2e-76	100.0
WP_003724014.1\|1685_2108_-	helix-turn-helix transcriptional regulator	A0A0B5CYL9	Listeria_phage	7.7e-69	98.6
WP_003733688.1\|2273_2483_+	helix-turn-helix domain-containing protein	A0A0B5D0D3	Listeria_phage	3.5e-30	95.6
WP_003733687.1\|2503_2698_+	hypothetical protein	A0A059T6E5	Listeria_phage	1.4e-25	95.3
WP_003733686.1\|2709_2994_+	hypothetical protein	A0A0B5D168	Listeria_phage	4.5e-41	85.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CWMY01000139

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CWMY01000139_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CWMY01000139_1

16911-17072

Orphan

I-A

Consensus_repeat	Method
ATTTATATTTCATAATAAGTAGTTAAAACA	CRISPRCasFinder
TTAATTTACATTTCATAATAAGTAGTTAAAACATTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CWMY01000139_1

>merge|NZ_CWMY01000139|1|16911-17072|CRISPRCasFinder,PILER-CR
TTTATGATTTCATAATAAGTAGTTAAAACATTACTAGAAGAAGATGGTTTAATTGGCTCGTTAATTTATATTTCATAATAAGTAGTTAAAACAATTACATAAAATCACTTTGCTAATTGCATAGTTTTTATTTACATTTCATAATAAGTAGTTAAAACATTT

>NZ_CWMY01000139|1|1|16911-17069|CRISPRCasFinder
TTTATGATTTCATAATAAGTAGTTAAAACA	TTACTAGAAGAAGATGGTTTAATTGGCTCGTTA
ATTTATATTTCATAATAAGTAGTTAAAACA	ATTACATAAAATCACTTTGCTAATTGCATAGTTTTT
ATTTACATTTCATAATAAGTAGTTAAAACA

>NZ_CWMY01000139|1|1|16917-17072|PILER-CR
ATTTCATAATAAGTAGTTAAAACATTACTAGAAGAAGATGGTT	TAATTGGCTCGTTAATTTATATTTCAT
AATAAGTAGTTAAAACAATTACATAAAATCACTTTGCTAATTG	CATAGTTTTTATTTACATTTCATA
ATAAGTAGTTAAAACATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CWMY01000139.1\|WP_003721311.1\|16469_16838_+\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NZ_CWMY01000139.1\|WP_003721317.1\|10920_11364_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CWMY01000139.1\|WP_003721320.1\|6839_7580_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CWMY01000139.1\|WP_057171662.1\|14907_16323_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CWMY01000139.1\|WP_003721316.1\|11469_12222_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CWMY01000139.1\|WP_031671650.1\|9213_10875_+\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_CWMY01000139.1\|WP_003721314.1\|13771_14776_-\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CWMY01000139.1\|WP_061112175.1\|5134_6610_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CWMY01000139.1\|WP_061112174.1\|7626_8958_-\|DUF1254-domain-containing-protein	unknown	unknown	gnl\|CDD\|227659
NZ_CWMY01000139.1\|WP_003721315.1\|12423_13740_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432

Protein	Function_ID	Function_description	E-value
NZ_CWMY01000139.1\|WP_003721311.1\|16469_16838_+\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	1.10012e-41
NZ_CWMY01000139.1\|WP_003721320.1\|6839_7580_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	2.56491e-51
NZ_CWMY01000139.1\|WP_057171662.1\|14907_16323_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.87135e-79
NZ_CWMY01000139.1\|WP_003721316.1\|11469_12222_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	5.24308e-64
NZ_CWMY01000139.1\|WP_031671650.1\|9213_10875_+\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.06019e-147
NZ_CWMY01000139.1\|WP_003721314.1\|13771_14776_-\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.07552e-20
NZ_CWMY01000139.1\|WP_061112174.1\|7626_8958_-\|DUF1254-domain-containing-protein	gnl\|CDD\|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	8.07616e-73
NZ_CWMY01000139.1\|WP_003721315.1\|12423_13740_+\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0

>NZ_CWMY01000139.1|WP_003721311.1|16469_16838_+|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGMAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVVVLLV
>NZ_CWMY01000139.1|WP_057171662.1|14907_16323_-|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGENGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGIPMVMMPAQTNGLNQLPRKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK
>NZ_CWMY01000139.1|WP_003721314.1|13771_14776_-|ROK-family-transcriptional-regulator
MAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKLIRDLVENEEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLLGEPEFVEDMSGEDLDITALKRNTKDIICAFPKISCVVIGVPGIEIGGKLRAMDFPLLLNVQLRETLEAEVNLPVLVETDTNAAILGYKNRPVKEENIVGLYYPERFPPGAGLLMNGEILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMVLLTMSFYDPETIVLYTNFYFGQKDFMEELKEELKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI
>NZ_CWMY01000139.1|WP_003721315.1|12423_13740_+|6-phospho-beta-glucosidase
MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAGREKLEIVGNLAKRMVKKAGVNMEIHLTLDREEALKDADFVTTQLRVGLLDARVKDERIPNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVLRYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTKDVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAEHGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQIVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAEAAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK
>NZ_CWMY01000139.1|WP_003721316.1|11469_12222_-|MurR/RpiR-family-transcriptional-regulator
MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVSTTTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQIQNAVEILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLSDKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEMYQEANITSQLPALYTIENIAREIRTQLDKEKM
>NZ_CWMY01000139.1|WP_003721317.1|10920_11364_-|hypothetical-protein
MYSNMKEKVVFTLIMCSLMILCMSSYNIFLENGIGTDSLLIVLKAFVPFLFIGFLLDFFVVGKIVYRLHALLVSEDASKFKKIIMMQLLMVTFMCVLMSTLSLIVNQGEWSHLGILILRNYFVALFLQIFIVSPFVRLISPRIFALL
>NZ_CWMY01000139.1|WP_031671650.1|9213_10875_+|SulP-family-inorganic-anion-transporter
MFKHILLSLNGYKISYLRNDVISGVGVAALTIPVAMGYAQVAGLPPIYGLYASFLPVIAYVIFASSPQLIFGIDATASAITGSIILGTAGLAAGSKEAIALAPILAFFCAIFLVLFSVLKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGDSFFSSLGIIFGQFFQSNWISFAMGVVTVIIVITCKKVIPKIPMSLVVLVLGTMAAYFFKLDQYNVDIVGKIPVGFPSLALPDFGASSWALAIGGGLVCAIATFAGSLLPSESFAMRNKYTIDDNRELFAYGVSNFVAAFSGCSPASASVSRTAANEQFRGKTQMVSIVAATIIALIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKVSRREATVWIVAALGTLLVGVIFGVLLGIFLSFINVVSRSMKTPIAILGVIEGRHGYFDLKRKPEAKPIPNVVIYRYSASLFFGNFNKFADGLKEAVQDDTKLVIFEASAIINIDTTATESMKDLLKWLDDKGIEYYFADLIDHLKTSFRKHDLGYLIDNGYTKKTVEDALDAYYAEHK
>NZ_CWMY01000139.1|WP_061112174.1|7626_8958_-|DUF1254-domain-containing-protein
MATQKNLVDLATKAYIYGFPFIFNTQQIERYVTVGIGGTKQVPFNNFTHASRLAEPSDKFVSVNNDTIYSNAPIDVSAGPVVLSVPDTSGRYYVLQFVDAWSNNFAYVGKRATGTSAGKFLLTPPNWNGDVPADMIEIKFPTNIGIIIGRLACDGEADLPTVRELQEQLKITPLNEGKEVDGFPEYDRSLGKELAFFEQLRVYMAQFPPAERDLVKQESFAPIGLMEKGVSPYSNPSEELKNALIEGAKAGLANIKKATTNFKSENGWGLTQHLFDYNADFFEIGTKKSLDWVIEDREEAYIIRAVSAITALWGNHGYEAVYLMTWTDTDGKALNGKNKYTLELNPIPPVDSFWSITMYDLPEYFLCENPINRYSIGDRTPGIQYNDDGGITIVVSKDEPTDPKERANWLPAPDAEFRPMFRLYNPQQPLVDGSYHFSGFEKK
>NZ_CWMY01000139.1|WP_003721320.1|6839_7580_+|MerR-family-transcriptional-regulator
MQIKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSSNPYEEEARKLWGDKVVEKANEKVNNMSEKEQLTLKESFDAEFRHLASVRKLTPESEEAQLEIDHFFHYLNDTHGNIYSLEAFASLGEMYVNDERFTKNIDQFGDGLSQFLQEAMTIYAKNK
>NZ_CWMY01000139.1|WP_061112175.1|5134_6610_-|hypothetical-protein
MIRKVKSISMWLWHHVTPQIFAVICVFIITIIALFMPPYIGMADNGDFFRIFSSNGLFVNNTNYDALQFGHFVKEFGIYQYFNENQVAIYSSQSIFIQMALLLNKLFWSTTVFDVRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYVVAALTVFIFADTAYTAYFNSFFSEGLILIMMLYISAGFLLLYQHKYNDYAMLGLIFVASLILITAKQQNAPIAVVIAVCGILVFFIRKNRAFRISAAATFLVIFLSGVVMYAFIPGEFVTINQYQTMTRGVLLDSENPEKSLEEMGMNSEFALLKGTNFYQKYKMIDLDSKLMEKEFYSNYNFVTVLSYYLENPKQFGKMLDLSAQNSFSIRPFEMGNFEKATGYKFKEKTHFFSAYSDVKEKFAPAKFTFLILWALVFLICYGVSAFKHFREKNIRGTLLFDLIVLLIGSGFAVILVTIVGDGEADLTKHNFLFNVCFDLTMLIGAASLLEVYLKKRGERNA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CWMY01000139_1	1.3\|16960\|27\|NZ_CWMY01000139\|PILER-CR	16960-16986	27	NZ_CP020425	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence	6313-6339	6	0.778
NZ_CWMY01000139_1	1.3\|16960\|27\|NZ_CWMY01000139\|PILER-CR	16960-16986	27	NZ_CP029156	Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence	41320-41346	6	0.778
NZ_CWMY01000139_1	1.3\|16960\|27\|NZ_CWMY01000139\|PILER-CR	16960-16986	27	NZ_CP029153	Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence	35364-35390	6	0.778
NZ_CWMY01000139_1	1.3\|16960\|27\|NZ_CWMY01000139\|PILER-CR	16960-16986	27	NZ_CP011969	Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence	1635-1661	6	0.778
NZ_CWMY01000139_1	1.3\|16960\|27\|NZ_CWMY01000139\|PILER-CR	16960-16986	27	MF001361	Enterococcus phage EF5, partial genome	5554-5580	6	0.778
NZ_CWMY01000139_1	1.3\|16960\|27\|NZ_CWMY01000139\|PILER-CR	16960-16986	27	MF001358	Enterococcus phage EF1, partial genome	111766-111792	6	0.778

1. spacer 1.3|16960|27|NZ_CWMY01000139|PILER-CR matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

actagaagaagatggtttaattggctc	CRISPR spacer
attagaaaaagatggtttaattgatga	Protospacer
*.*****.***************..

2. spacer 1.3|16960|27|NZ_CWMY01000139|PILER-CR matches to NZ_CP029156 (Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.778

actagaagaagatggtttaattggctc	CRISPR spacer
attagaaaaagatggtttaattgatga	Protospacer
*.*****.***************..

3. spacer 1.3|16960|27|NZ_CWMY01000139|PILER-CR matches to NZ_CP029153 (Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

actagaagaagatggtttaattggctc	CRISPR spacer
attagaaaaagatggtttaattgatga	Protospacer
*.*****.***************..

4. spacer 1.3|16960|27|NZ_CWMY01000139|PILER-CR matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.778

actagaagaagatggtttaattggctc	CRISPR spacer
attagaaaaagatggtttaattgatga	Protospacer
*.*****.***************..

5. spacer 1.3|16960|27|NZ_CWMY01000139|PILER-CR matches to MF001361 (Enterococcus phage EF5, partial genome) position: , mismatch: 6, identity: 0.778

actagaagaagatggtttaattggctc	CRISPR spacer
actagaagaacttggtttaattgctgg	Protospacer
**********  *********** .

6. spacer 1.3|16960|27|NZ_CWMY01000139|PILER-CR matches to MF001358 (Enterococcus phage EF1, partial genome) position: , mismatch: 6, identity: 0.778

actagaagaagatggtttaattggctc	CRISPR spacer
actagaagaacttggtttaattgctgg	Protospacer
**********  *********** .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CWMY01000123

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1640 : 9484

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722604.1\|1640_2612_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003722605.1\|2619_3588_-	YvcK family protein	A1IMD5	Streptococcus_phage	6.7e-68	43.3
WP_003722606.1\|3589_4465_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_033918280.1\|4572_6303_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	3.0e-175	54.0
WP_003734087.1\|6344_7406_-	galactose mutarotase	NA	NA	NA	NA
WP_009924988.1\|7422_8406_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.1e-52	38.4
WP_003722610.1\|8524_9484_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CWMY01000300

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr_ID: NZ_CWMY01000300.1|WP_003731276.1|1124_1376_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CWMY01000300.1|WP_003731276.1|1124_1376_-|hypothetical-protein

1124_1376_-

83 aa aa

AcrIIA12

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3641\|WP_003731276.1\|AcrIIA12\|II-A\|Verified\|Listeria-monocytogenes	1.0	1	1.0

6. NZ_CWMY01000002

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2898 : 11184

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722250.1\|2898_4191_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.2e-17	32.6
WP_003722249.1\|4271_4985_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	2.7e-42	38.7
WP_003722248.1\|4996_5242_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003722247.1\|5245_5929_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003722246.1\|5921_8141_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.6e-160	41.4
WP_003722245.1\|8125_9553_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_003722244.1\|9571_10621_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.0e-61	43.2
WP_003722243.1\|10617_11184_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_CWMY01000037

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11978 : 22705

Listeria_phage(40.0%)

holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009924934.1\|11978_12707_-	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGH1	Paenibacillus_phage	4.3e-35	42.5
WP_031669178.1\|12687_13110_-\|holin	holin family protein	Q2I8E7	Bacillus_phage	1.5e-27	46.3
WP_003721754.1\|13128_13665_-	hypothetical protein	NA	NA	NA	NA
WP_003721753.1\|13661_14141_-	hypothetical protein	NA	NA	NA	NA
WP_003721752.1\|14155_14731_-	hypothetical protein	NA	NA	NA	NA
WP_015453957.1\|14745_15045_-	hypothetical protein	NA	NA	NA	NA
WP_057171695.1\|15034_16171_-\|tail	phage tail protein	A0A0B5D0G3	Listeria_phage	1.7e-46	33.5
WP_057171696.1\|16180_16999_-\|tail	phage tail family protein	Q9T1A6	Listeria_phage	4.4e-44	35.5
WP_061112172.1\|16995_18864_-	hypothetical protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_072217178.1\|18850_19255_-	phenylalanine racemase	A0A097PAX1	Streptococcus_pyogenes_phage	2.4e-19	43.5
WP_003721745.1\|19296_19599_-	hypothetical protein	NA	NA	NA	NA
WP_003721744.1\|19646_20159_-\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003733902.1\|20171_20561_-	DUF5072 family protein	NA	NA	NA	NA
WP_003732220.1\|20838_21255_-	hypothetical protein	NA	NA	NA	NA
WP_003732219.1\|21266_21695_-	hypothetical protein	A8ATZ8	Listeria_phage	3.0e-12	45.7
WP_003721740.1\|21911_22247_+	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003721739.1\|22252_22705_+	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

8. NZ_CWMY01000303

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CWMY01000303_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CWMY01000303_1

1432-2016

Orphan

Consensus_repeat	Method
CATATNAGTTACTGAACTNGTATCAAAATNACTTACATC	CRT

7 spacers

The CRISPR arrays of NZ_CWMY01000303_1

>merge|NZ_CWMY01000303|1|1432-2016|CRT
CATGTTAGTCACTGAACTGGTATCAAAGGTACTTAAATCAAGCTTCTCCACTTTTTCATTATCAGAAAACATGGCAGCCATATTAGTTACTGAACTCGTATCAAAATTACTTACATCTAACACTTCAAGACTAGTACAACCAGCAAACATGGCACGCATATCAGTTACTAAGCTCGTATTAAAATTACTTACATCCAACTTCTCAAGGGCGCTACAATTTCTAAACATTTGAACCATTGCAGTAGCGGAACTGGTATCGAAATTACTTACATCTAGTTTCTTCAGTTTTTCACAGCCATTAAACACTCTATACATATCAGTTACTGAACTCGTATCAAAATGACTTACATCCAGCTCTTCAAGACTAGTACAATCTTCAAACATGGCATACATATTAGTTACTGAACTCGTATCAAGGTTGCTTACATCCAGCACCTCAAGATTTCTATTATCATAAAACATGTAAGACATATTAGTTACTGAACTTGTATCAAAATGACTTACATCCAGTTCCTCAAGTGCCCTACAGCTGTTAAACATATCCCACATAGTAGTTACCGCACTAGTATCAAGACCACTCAAATC

>NZ_CWMY01000303|1|1|1432-2016|CRT
CATGTTAGTCACTGAACTGGTATCAAAGGTACTTAAATC	AAGCTTCTCCACTTTTTCATTATCAGAAAACATGGCAGC
CATATTAGTTACTGAACTCGTATCAAAATTACTTACATC	TAACACTTCAAGACTAGTACAACCAGCAAACATGGCACG
CATATCAGTTACTAAGCTCGTATTAAAATTACTTACATC	CAACTTCTCAAGGGCGCTACAATTTCTAAACATTTGAAC
CATTGCAGTAGCGGAACTGGTATCGAAATTACTTACATC	TAGTTTCTTCAGTTTTTCACAGCCATTAAACACTCTATA
CATATCAGTTACTGAACTCGTATCAAAATGACTTACATC	CAGCTCTTCAAGACTAGTACAATCTTCAAACATGGCATA
CATATTAGTTACTGAACTCGTATCAAGGTTGCTTACATC	CAGCACCTCAAGATTTCTATTATCATAAAACATGTAAGA
CATATTAGTTACTGAACTTGTATCAAAATGACTTACATC	CAGTTCCTCAAGTGCCCTACAGCTGTTAAACATATCCCA
CATAGTAGTTACCGCACTAGTATCAAGACCACTCAAATC

>NZ_CWMY01000303.1|WP_003721252.1|64_538_-|hypothetical-protein
MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDHSAVDWNGKKQKDTSGEENTIAIPGFEKVTLYANETKQAVNFHNPEINDCYFKISLIHPDGSVLWISDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NZ_CWMY01000303.1|WP_003721250.1|2808_4878_-|BspA-family-leucine-rich-repeat-surface-protein
MKKLSMRVILIVTVIFIACGSANVSIAQEMDIANKLPEEELGSLDTSNVNTEGVPQDKSAEVENLEEIPITDDLEQNPDVLEQPVADSDDSDLTVVDSGAYWTIYHNTANGEYSLHMFGNVPSSKPTAWNSYLNSIKHIEIEEATLIGDFSSYFRSFFFTALESVRIERSNLSGVKSFALAFYSSGIEKVIIRDNDYSTAPSLLTTEGMFKNCSNLTELDLSGLDTSAVTTMRDMFYSCSALEELDVSHFDTSSVTNMSYLFYDNEKLEKLDVSNFDTSLVTNMYAMFANCTSLEELDVSNFDTSSATDIYRMFESCVKLKKLDVSNFDTSSVTDMAYMFRNCSTLEKLDVSNFNTSSVTSMRAMFAGCTSLEALDISNFDTSSVTDMASMFLTCTSLEELDLSTFDTSLVDFMGYMFKDCTNLKTLYLNNFTDAASTIDMFTGTTSLTYLFVSHNFKVFNGLEDTNWYDEKNWVQFETVWQLQTYHWRQSEPIGYRKGAFLSLTMDAMGGQFEDMEEQKVQNKVFGDYWEEMLPVKDGHYFDGWYLDQYFTSKFDFSLPADASITIYAKWIENYTVVIPASIFLNETSELKVEGINRGDKTLSVGLNRTATSISESNELTLANTADTTVQCLAPLSWDGSENNPKNAILTLAPGSEITEGDAVMEIESPENIQAGKYTGNLVFSINYE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CWMY01000303_1	1.2\|1549\|39\|NZ_CWMY01000303\|CRT	1549-1587	39	NZ_CWMY01000303.1	3754-3792	2	0.949

1. spacer 1.2|1549|39|NZ_CWMY01000303|CRT matches to position: 3754-3792, mismatch: 2, identity: 0.949

taacacttcaagactagtacaaccagcaaacatggcacg	CRISPR spacer
taacgcttcaagactagtacagccagcaaacatggcacg	Protospacer
****.****************.*****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

9. NZ_CWMY01000115

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CWMY01000115_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CWMY01000115_1

140-423

Orphan

I-A

Consensus_repeat	Method
ATTTACATTTCAAAATAAGTAACTAAAAC	PILER-CR
ATTTACATTTCAAAATAAGTAACTAAAACG	CRISPRCasFinder
ATTTACATTTCAAAATAAGTAACTAAAAC	CRT

4 spacers

The CRISPR arrays of NZ_CWMY01000115_1

>merge|NZ_CWMY01000115|1|140-423|PILER-CR,CRISPRCasFinder,CRT
ATTTACATTTCATAATAAGTAACTAAAACCTTCATTAGGACTATCACCACCAGCATTCAAAACCATTTACATTTCAAAATAAGTAACTAAAACGTAAATATCCCTCATGATTTTTCTTTTGTTCTAGATTTACATTTCAAAATAAGTAACTAAAACGCGGATTAGAAACGATGACACTTGCCTTAAAAAAATTTACATTTCAAAATAAGTAACTAAAACGGTAAGGACTTCTTCACCATCTTTCATTTCTGTTTATTTACATTTCAAAATAAGTAACTAAAACC

>NZ_CWMY01000115|1|1|140-422|PILER-CR
ATTTACATTTCATAATAAGTAACTAAAAC	CTTCATTAGGACTATCACCACCAGCATTCAAAACC
ATTTACATTTCAAAATAAGTAACTAAAAC	GTAAATATCCCTCATGATTTTTCTTTTGTTCTAG
ATTTACATTTCAAAATAAGTAACTAAAAC	GCGGATTAGAAACGATGACACTTGCCTTAAAAAA
ATTTACATTTCAAAATAAGTAACTAAAAC	GGTAAGGACTTCTTCACCATCTTTCATTTCTGTTT
ATTTACATTTCAAAATAAGTAACTAAAAC

>NZ_CWMY01000115|1|1|140-423|CRISPRCasFinder
ATTTACATTTCATAATAAGTAACTAAAACC	TTCATTAGGACTATCACCACCAGCATTCAAAACC
ATTTACATTTCAAAATAAGTAACTAAAACG	TAAATATCCCTCATGATTTTTCTTTTGTTCTAG
ATTTACATTTCAAAATAAGTAACTAAAACG	CGGATTAGAAACGATGACACTTGCCTTAAAAAA
ATTTACATTTCAAAATAAGTAACTAAAACG	GTAAGGACTTCTTCACCATCTTTCATTTCTGTTT
ATTTACATTTCAAAATAAGTAACTAAAACC

>NZ_CWMY01000115|1|1|140-422|CRT
ATTTACATTTCATAATAAGTAACTAAAAC	CTTCATTAGGACTATCACCACCAGCATTCAAAACC
ATTTACATTTCAAAATAAGTAACTAAAAC	GTAAATATCCCTCATGATTTTTCTTTTGTTCTAG
ATTTACATTTCAAAATAAGTAACTAAAAC	GCGGATTAGAAACGATGACACTTGCCTTAAAAAA
ATTTACATTTCAAAATAAGTAACTAAAAC	GGTAAGGACTTCTTCACCATCTTTCATTTCTGTTT
ATTTACATTTCAAAATAAGTAACTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CWMY01000115.1\|WP_003721295.1\|660_1596_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CWMY01000115.1\|WP_003721294.1\|1735_3007_-\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_CWMY01000115.1\|WP_003721286.1\|8719_9370_-\|transaldolase	unknown	unknown	gnl\|CDD\|223254
NZ_CWMY01000115.1\|WP_003721287.1\|6550_8611_-\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CWMY01000115.1\|WP_003721293.1\|3021_3315_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_CWMY01000115.1\|WP_003721290.1\|5034_5433_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CWMY01000115.1\|WP_003721291.1\|4373_5024_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_CWMY01000115.1\|WP_003721288.1\|5944_6547_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
NZ_CWMY01000115.1\|WP_003721292.1\|3330_4377_-\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_CWMY01000115.1\|WP_003721289.1\|5449_5917_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129

Protein	Function_ID	Function_description	E-value
NZ_CWMY01000115.1\|WP_003721295.1\|660_1596_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	2.38027e-153
NZ_CWMY01000115.1\|WP_003721294.1\|1735_3007_-\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
NZ_CWMY01000115.1\|WP_003721286.1\|8719_9370_-\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	1.40072e-62
NZ_CWMY01000115.1\|WP_003721287.1\|6550_8611_-\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	2.1337e-80
NZ_CWMY01000115.1\|WP_003721293.1\|3021_3315_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
NZ_CWMY01000115.1\|WP_003721288.1\|5944_6547_-\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	1.67992e-75
NZ_CWMY01000115.1\|WP_003721291.1\|4373_5024_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	4.74405e-108
NZ_CWMY01000115.1\|WP_003721292.1\|3330_4377_-\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
NZ_CWMY01000115.1\|WP_003721289.1\|5449_5917_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	3.45565e-37

>NZ_CWMY01000115.1|WP_003721295.1|660_1596_-|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSSIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NZ_CWMY01000115.1|WP_003721294.1|1735_3007_-|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>NZ_CWMY01000115.1|WP_003721293.1|3021_3315_-|PTS-sugar-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>NZ_CWMY01000115.1|WP_003721292.1|3330_4377_-|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>NZ_CWMY01000115.1|WP_003721291.1|4373_5024_-|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
>NZ_CWMY01000115.1|WP_003721290.1|5034_5433_-|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>NZ_CWMY01000115.1|WP_003721289.1|5449_5917_-|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQDKEKLLTEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>NZ_CWMY01000115.1|WP_003721288.1|5944_6547_-|SIS-domain-containing-protein
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVETIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>NZ_CWMY01000115.1|WP_003721287.1|6550_8611_-|BglG-family-transcription-antiterminator
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADINDSNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>NZ_CWMY01000115.1|WP_003721286.1|8719_9370_-|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPSILVKEKCNRQTAINRILELTDKQVFVQTVGFTYEEILADARMLLTMFGKDKIAIKIPAHEAGTNVIDTLKKEDKTIQILGTAIYSADQAITAALAGADFVAPYVNRMSAANIDPFKEISQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CWMY01000115_1	1.8\|360\|34\|NZ_CWMY01000115\|CRISPRCasFinder	360-393	34	MT496970	Escherichia phage Mt1B1_P17, complete genome	96388-96421	12	0.647

1. spacer 1.8|360|34|NZ_CWMY01000115|CRISPRCasFinder matches to MT496970 (Escherichia phage Mt1B1_P17, complete genome) position: , mismatch: 12, identity: 0.647

gtaaggacttcttcaccatctttcatttctgttt	CRISPR spacer
tctgttacttcttcactatctttcttttctagaa	Protospacer
 . .  **********.******* *****.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

10. NZ_CWMY01000059

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

34 : 30633

Listeria_phage(94.87%)

terminase,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722520.1\|34_808_+	DUF3825 domain-containing protein	A8ATW5	Listeria_phage	9.5e-150	100.0
WP_003733663.1\|848_1694_-	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	2.7e-137	94.7
WP_003722522.1\|1693_1975_-\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
WP_003722523.1\|1987_2353_-	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
WP_072225509.1\|2391_4557_-\|tail	phage tail protein	A8ATW1	Listeria_phage	0.0e+00	94.3
WP_003731724.1\|4569_6138_-\|tail	phage tail family protein	A8ATW0	Listeria_phage	4.7e-305	99.6
WP_072225508.1\|6134_10934_-\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	99.7
WP_072225507.1\|10938_11250_-	hypothetical protein	A8ATV8	Listeria_phage	1.2e-42	98.9
WP_015987409.1\|11246_11678_-	hypothetical protein	A8ATV7	Listeria_phage	9.6e-75	100.0
WP_015987408.1\|11733_12420_-	Ig domain-containing protein	A8ATV6	Listeria_phage	9.4e-117	100.0
WP_003725064.1\|12424_12796_-	hypothetical protein	A8ATV5	Listeria_phage	8.5e-64	100.0
WP_015987407.1\|12792_13110_-	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	9.9e-53	100.0
WP_015987430.1\|13099_13465_-	hypothetical protein	A8ATV3	Listeria_phage	4.4e-65	100.0
WP_012951937.1\|13464_13818_-	hypothetical protein	A8ATV2	Listeria_phage	7.6e-62	100.0
WP_172425835.1\|13818_13986_-	hypothetical protein	A8ATV1	Listeria_phage	1.7e-11	100.0
WP_015987427.1\|13999_14872_-	F420-dependent oxidoreductase	A8ATV0	Listeria_phage	1.2e-161	100.0
WP_003744996.1\|14894_15449_-	hypothetical protein	A8ATU9	Listeria_phage	1.1e-88	99.5
WP_039380729.1\|15544_16588_-	hypothetical protein	A0A0B5D111	Listeria_phage	1.6e-195	97.4
WP_023552450.1\|16592_18152_-	hypothetical protein	A0A0B5D0A6	Listeria_phage	3.1e-293	97.3
WP_045131573.1\|18166_19513_-\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	1.5e-251	93.6
WP_003733717.1\|19478_20204_-	helix-turn-helix domain-containing protein	A0A0B5CTX0	Listeria_phage	4.4e-80	68.5
WP_003733718.1\|20247_20475_-	hypothetical protein	A0A0B5CTV3	Listeria_phage	2.4e-32	94.7
WP_025370640.1\|20750_21185_-	hypothetical protein	A8ASQ1	Listeria_phage	3.1e-57	76.4
WP_003733720.1\|21249_21747_-	Holliday junction resolvase RecU	A0A1L2JY30	Aeribacillus_phage	1.8e-32	49.3
WP_025370641.1\|21736_21919_-	hypothetical protein	A8ASP6	Listeria_phage	3.6e-15	79.3
WP_025370642.1\|21940_22423_-	single-stranded DNA-binding protein	A8ASP5	Listeria_phage	1.6e-70	83.8
WP_003733723.1\|22423_22678_-	hypothetical protein	A0A059T5G2	Listeria_phage	3.4e-40	92.8
WP_009930870.1\|22856_23393_-	hypothetical protein	D9J0I6	Brochothrix_phage	2.3e-09	31.7
WP_009930868.1\|23389_23557_-	hypothetical protein	NA	NA	NA	NA
WP_014601509.1\|23557_23767_-	hypothetical protein	A8ATE0	Listeria_phage	1.7e-32	100.0
WP_014601510.1\|23763_24165_-	hypothetical protein	A8ATD9	Listeria_phage	2.6e-74	100.0
WP_014929526.1\|24242_24389_-	hypothetical protein	A8ATZ0	Listeria_phage	1.7e-20	100.0
WP_072225506.1\|24385_24946_-	DUF1642 domain-containing protein	A8ATY9	Listeria_phage	7.5e-72	75.3
WP_003722560.1\|24942_25755_-	DNA adenine methylase	Q8W5X3	Listeria_phage	4.8e-152	95.6
WP_072225505.1\|25751_26684_-	DnaD domain-containing protein	A8ATY7	Listeria_phage	4.3e-165	97.7
WP_010991173.1\|26703_27519_-	recombinase RecT	A8ATY6	Listeria_phage	3.5e-150	98.9
WP_077947174.1\|27521_28481_-	YqaJ viral recombinase family protein	A8ATY5	Listeria_phage	1.8e-177	99.1
WP_003725088.1\|28716_28905_-	hypothetical protein	Q9T175	Listeria_phage	6.9e-22	79.0
WP_031644321.1\|29006_29213_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003733682.1\|29202_29733_-	hypothetical protein	A0A0B5D173	Listeria_phage	2.7e-79	89.6
WP_003733683.1\|29856_30633_-	phage antirepressor Ant	A0A0B5D0I2	Listeria_phage	6.9e-140	97.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage