CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_MDMX01000031	Listeria monocytogenes strain Lm112 contig000031, whole genome shotgun sequence	0 crisprs	csa3	0	1	0
NZ_MDMX01000029	Listeria monocytogenes strain Lm112 contig000029, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000017	Listeria monocytogenes strain Lm112 contig000017, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000012	Listeria monocytogenes strain Lm112 contig000012, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000013	Listeria monocytogenes strain Lm112 contig000013, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000030	Listeria monocytogenes strain Lm112 contig000030, whole genome shotgun sequence	0 crisprs	csa3	0	0	0
NZ_MDMX01000009	Listeria monocytogenes strain Lm112 contig000009, whole genome shotgun sequence	0 crisprs	DinG	0	0	0
NZ_MDMX01000007	Listeria monocytogenes strain Lm112 contig000007, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000014	Listeria monocytogenes strain Lm112 contig000014, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000002	Listeria monocytogenes strain Lm112 contig000002, whole genome shotgun sequence	0 crisprs	DinG	0	1	0
NZ_MDMX01000021	Listeria monocytogenes strain Lm112 contig000021, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000005	Listeria monocytogenes strain Lm112 contig000005, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000015	Listeria monocytogenes strain Lm112 contig000015, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000001	Listeria monocytogenes strain Lm112 contig000001, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_MDMX01000023	Listeria monocytogenes strain Lm112 contig000023, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000028	Listeria monocytogenes strain Lm112 contig000028, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000004	Listeria monocytogenes strain Lm112 contig000004, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000010	Listeria monocytogenes strain Lm112 contig000010, whole genome shotgun sequence	0 crisprs	NA	0	1	1
NZ_MDMX01000008	Listeria monocytogenes strain Lm112 contig000008, whole genome shotgun sequence	0 crisprs	csa3,WYL	0	1	0
NZ_MDMX01000011	Listeria monocytogenes strain Lm112 contig000011, whole genome shotgun sequence	1 crisprs	csn2,cas2,cas1,cas9	14	0	0
NZ_MDMX01000018	Listeria monocytogenes strain Lm112 contig000018, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000027	Listeria monocytogenes strain Lm112 contig000027, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000022	Listeria monocytogenes strain Lm112 contig000022, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000024	Listeria monocytogenes strain Lm112 contig000024, whole genome shotgun sequence	1 crisprs	NA	0	0	0
NZ_MDMX01000003	Listeria monocytogenes strain Lm112 contig000003, whole genome shotgun sequence	0 crisprs	WYL,casR	0	0	0
NZ_MDMX01000025	Listeria monocytogenes strain Lm112 contig000025, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000019	Listeria monocytogenes strain Lm112 contig000019, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000026	Listeria monocytogenes strain Lm112 contig000026, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000006	Listeria monocytogenes strain Lm112 contig000006, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_MDMX01000020	Listeria monocytogenes strain Lm112 contig000020, whole genome shotgun sequence	0 crisprs	cas3,DEDDh	0	2	0
NZ_MDMX01000016	Listeria monocytogenes strain Lm112 contig000016, whole genome shotgun sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

96015 : 106744

Listeria_phage(40.0%)

holin,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003724957.1\|96015_96744_-	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGH1	Paenibacillus_phage	1.3e-34	42.5
WP_003728205.1\|96724_97147_-\|holin	holin family protein	Q2I8E7	Bacillus_phage	8.6e-28	46.3
WP_003728206.1\|97165_97702_-	hypothetical protein	NA	NA	NA	NA
WP_003728207.1\|97698_98178_-	hypothetical protein	NA	NA	NA	NA
WP_003728208.1\|98192_98768_-	hypothetical protein	NA	NA	NA	NA
WP_003721751.1\|98782_99082_-	hypothetical protein	NA	NA	NA	NA
WP_003728209.1\|99071_100208_-\|tail	phage tail protein	A0A0B5D0G3	Listeria_phage	2.2e-46	33.8
WP_003728210.1\|100217_101036_-\|tail	phage tail family protein	Q9T1A6	Listeria_phage	4.4e-44	35.5
WP_003728211.1\|101032_102901_-	hypothetical protein	A0A097PAU2	Streptococcus_pyogenes_phage	4.5e-20	45.8
WP_003740367.1\|102887_103292_-	hypothetical protein	A0A097PAX1	Streptococcus_pyogenes_phage	8.2e-20	43.7
WP_003721745.1\|103333_103636_-	hypothetical protein	NA	NA	NA	NA
WP_003721744.1\|103683_104196_-\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003728212.1\|104208_104598_-	DUF5072 family protein	NA	NA	NA	NA
WP_003728213.1\|104877_105294_-	hypothetical protein	NA	NA	NA	NA
WP_003724946.1\|105305_105734_-	hypothetical protein	A8ATZ8	Listeria_phage	3.9e-12	45.7
WP_003721740.1\|105950_106286_+	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003728215.1\|106291_106744_+	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_MDMX01000001

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

87018 : 95304

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728224.1\|87018_87585_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.8e-25	36.4
WP_003726210.1\|87581_88631_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.2e-63	44.4
WP_003722245.1\|88649_90077_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_003726211.1\|90061_92281_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.5e-158	40.7
WP_003726212.1\|92273_92957_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003722248.1\|92960_93206_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003728223.1\|93217_93931_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	8.8e-41	38.3
WP_003726215.1\|94011_95304_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_MDMX01000024

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CRISPR-Cas detection and classification

Crispr_ID: NZ_MDMX01000024_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_MDMX01000024_1

382-966

Orphan

Consensus_repeat	Method
CATATNAGTTACTGAACTNGTATCAAAATTACTTACATC	CRT

7 spacers

The CRISPR arrays of NZ_MDMX01000024_1

>merge|NZ_MDMX01000024|1|382-966|CRT
CATGTTAGTCACTGAACTGGTATCAAAGGTACTTAAATCAAGCTTCTCCAGTTTTTCATTATCAGAAAACATGGCAGCCATATTAGTTACTGAACTCGTATCAAAATTACTTACATCTAACGCTTCAAGACTAGTACAACCAGCAAACATGGCACGCATATCAGTTACTAAGCTCGTATTAAAATTACTTACATCCAACTTCTCAAGGGCGCTACAATTTCTAAACATTTGAACCATTGCAGTAGCGGAACTGGTATCGAAATTACTTACATCTAGTTTCTTCAGTTTTTCACAGCCATTAAACACTCTATACATATCAGTTACTGAACTCGTATCAAAATTACTTACATCCAGCTCTTCAAGACTAGTACAATCTTCAAACATGGCATACATATTAGTTACTGAACCGGTATCAAGGTTGCTTACATCCAGCACCTCAAGGTTTCTATTATCATAAAACATGTAAGACATATTAGTTACTGAACTCGTATCAAAATGACTTACATCCAGTTCCTCAAGTGCCCTACAGCTGTTAAACATATCCCACATAGTAGTTACCGCACTAGTATCAAGACCACTCAAATC

>NZ_MDMX01000024|1|1|382-966|CRT
CATGTTAGTCACTGAACTGGTATCAAAGGTACTTAAATC	AAGCTTCTCCAGTTTTTCATTATCAGAAAACATGGCAGC
CATATTAGTTACTGAACTCGTATCAAAATTACTTACATC	TAACGCTTCAAGACTAGTACAACCAGCAAACATGGCACG
CATATCAGTTACTAAGCTCGTATTAAAATTACTTACATC	CAACTTCTCAAGGGCGCTACAATTTCTAAACATTTGAAC
CATTGCAGTAGCGGAACTGGTATCGAAATTACTTACATC	TAGTTTCTTCAGTTTTTCACAGCCATTAAACACTCTATA
CATATCAGTTACTGAACTCGTATCAAAATTACTTACATC	CAGCTCTTCAAGACTAGTACAATCTTCAAACATGGCATA
CATATTAGTTACTGAACCGGTATCAAGGTTGCTTACATC	CAGCACCTCAAGGTTTCTATTATCATAAAACATGTAAGA
CATATTAGTTACTGAACTCGTATCAAAATGACTTACATC	CAGTTCCTCAAGTGCCCTACAGCTGTTAAACATATCCCA
CATAGTAGTTACCGCACTAGTATCAAGACCACTCAAATC

>NZ_MDMX01000024.1|WP_003728089.1|1758_3840_-|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIALGNANVSIAQERDTTNKLPEEELGSLDTSNLIAEEVAQDKPAEVENLEEIPTTDELMQNPDVREQSVADSDDPDLTAVSSGDYWTIYYNSANDEYSLRMFGNVPSSKPSAWNSYLKYIKHIEIEEATLTGDFSSYFRSNVFTVLESVRIERSNLSGVTSFARAFEGDSESESPLEKVIIRDNYYPETPSLTNISRMFTLCRKLSELDVSGLNTSSVTKMDTIFSNANSLKELDVSHFDTSSVTDMSSMFAACNSLEELDVSNFDTSSVTNMKYMLSGLHLKKLDVSNFDTSSVTNMYGMFAYCYNLEELDVSNFDTSSVNNMLHMFYVCNNLEELDLSNFDTSSVTNMFAMFAYCTSLKEIDVSNFDTSSVTTMSAMFFECSSLEALDLSNFDTSSVTTMASMFENSTALKSLYLDNFTDAASMTDMFKGTTSLTYLFVSHNLSTFNRLENTSWYDEKNWVQFSNLSQLQTYHRKQSEPTGYRKGAFLSLTMDAMGGEFEDAEEQKVQNKVSGEYWEEIVPVKEDYYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVIIPASISLNEATELKVEGINRGSKALSVGLNRLATSVSESNELTLANTADTTVQCSAPLSWDGSENNPEKAILTLAPGSEITEGDAVMAIEAPENIQAGKYTGNLVFSINYE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_MDMX01000008

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

126560 : 134402

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722610.1\|126560_127520_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7
WP_003727909.1\|127636_128620_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.5e-51	38.1
WP_009918600.1\|128636_129698_+	galactose mutarotase	NA	NA	NA	NA
WP_003725409.1\|129739_131470_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	9.5e-174	53.1
WP_003727911.1\|131577_132453_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_003731212.1\|132454_133423_+	YvcK family protein	A1IMD5	Streptococcus_phage	1.8e-68	43.6
WP_003725407.1\|133430_134402_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_MDMX01000011

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CRISPR-Cas detection and classification

Crispr_ID: NZ_MDMX01000011_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_MDMX01000011_1

5317-6673

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR

20 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_MDMX01000011_1

>merge|NZ_MDMX01000011|1|5317-6673|CRISPRCasFinder,CRT,PILER-CR
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAACCCCTGTTAGCGATGGGGGGGAAGAATATTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACTCAATCAAAACAGGTATAAACTCTTTGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCATCGATAGATTAATTCCATCGTATTTAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACTTGTCATTGGAGAAATACTTTCATCAGTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAAGACCTAAGTTATATTCCAAGTTTAGACGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTACTTGATGTCAAACATGTAACGCGGAAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAATACGTCTCTCTTGATTTTTATACGAGTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGAGGTCATCAAAGAAGACGATCATACGTGCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTGTTTTCAATTGTTTCTAGTTCTTCATTAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGTTTAAAGATGCGGAAGAATTCGACCAAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCTAAGTGCGTCTGTAGTCTCGTTGCCTCTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCGCAAGCCGGGATTACCCCCACGAACCTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCATATCTAAAATTTGACCTTGACAACGTGAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGGAAATACCGACTTGGACTATCGTGTACACGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTTCTGATTGGGTTTGATGAATTGACTCGCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGGGCTTTTATTGTGGATATAGAAGTCTGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAACAGAAATGAAGGATGGTGAAGAAGTTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGACGAGGTCGTTTCTTGTCCGGTGAATAAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTATTGCTTGGAATTTCATCGGCTAAGCGGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTGAAAATGCCATCCAGATTTCAAAATACGTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_MDMX01000011|1|1|5317-6673|CRISPRCasFinder
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAAC	CCCTGTTAGCGATGGGGGGGAAGAATATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTCAATCAAAACAGGTATAAACTCTTTGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCATCGATAGATTAATTCCATCGTATTTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTTGTCATTGGAGAAATACTTTCATCAGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGACCTAAGTTATATTCCAAGTTTAGAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTACTTGATGTCAAACATGTAACGCGGAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATACGTCTCTCTTGATTTTTATACGAGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAGGTCATCAAAGAAGACGATCATACGTGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGTTTTCAATTGTTTCTAGTTCTTCATTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTTTAAAGATGCGGAAGAATTCGACCAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCTAAGTGCGTCTGTAGTCTCGTTGCCTCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGCAAGCCGGGATTACCCCCACGAACCTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CATATCTAAAATTTGACCTTGACAACGTGAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGAAATACCGACTTGGACTATCGTGTACAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTTCTGATTGGGTTTGATGAATTGACTCGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGGGCTTTTATTGTGGATATAGAAGTCTGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAACAGAAATGAAGGATGGTGAAGAAGTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GACGAGGTCGTTTCTTGTCCGGTGAATAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATTGCTTGGAATTTCATCGGCTAAGCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGAAAATGCCATCCAGATTTCAAAATACGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_MDMX01000011|1|1|5317-6673|CRT
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAAC	CCCTGTTAGCGATGGGGGGGAAGAATATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTCAATCAAAACAGGTATAAACTCTTTGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCATCGATAGATTAATTCCATCGTATTTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTTGTCATTGGAGAAATACTTTCATCAGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGACCTAAGTTATATTCCAAGTTTAGAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTACTTGATGTCAAACATGTAACGCGGAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATACGTCTCTCTTGATTTTTATACGAGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAGGTCATCAAAGAAGACGATCATACGTGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGTTTTCAATTGTTTCTAGTTCTTCATTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTTTAAAGATGCGGAAGAATTCGACCAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCTAAGTGCGTCTGTAGTCTCGTTGCCTCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGCAAGCCGGGATTACCCCCACGAACCTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CATATCTAAAATTTGACCTTGACAACGTGAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGAAATACCGACTTGGACTATCGTGTACAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTTCTGATTGGGTTTGATGAATTGACTCGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGGGCTTTTATTGTGGATATAGAAGTCTGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAACAGAAATGAAGGATGGTGAAGAAGTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GACGAGGTCGTTTCTTGTCCGGTGAATAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATTGCTTGGAATTTCATCGGCTAAGCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGAAAATGCCATCCAGATTTCAAAATACGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_MDMX01000011|1|1|5383-6673|PILER-CR
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTCAATCAAAACAGGTATAAACTCTTTGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCATCGATAGATTAATTCCATCGTATTTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTTGTCATTGGAGAAATACTTTCATCAGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGACCTAAGTTATATTCCAAGTTTAGAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTACTTGATGTCAAACATGTAACGCGGAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATACGTCTCTCTTGATTTTTATACGAGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAGGTCATCAAAGAAGACGATCATACGTGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGTTTTCAATTGTTTCTAGTTCTTCATTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTTTAAAGATGCGGAAGAATTCGACCAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCTAAGTGCGTCTGTAGTCTCGTTGCCTCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGCAAGCCGGGATTACCCCCACGAACCTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CATATCTAAAATTTGACCTTGACAACGTGAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGAAATACCGACTTGGACTATCGTGTACAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTTCTGATTGGGTTTGATGAATTGACTCGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGGGCTTTTATTGTGGATATAGAAGTCTGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAACAGAAATGAAGGATGGTGAAGAAGTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GACGAGGTCGTTTCTTGTCCGGTGAATAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATTGCTTGGAATTTCATCGGCTAAGCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGAAAATGCCATCCAGATTTCAAAATACGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_MDMX01000011.1\|WP_003723648.1\|7453_7795_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_MDMX01000011.1\|WP_003726075.1\|13875_14268_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_MDMX01000011.1\|WP_003727701.1\|16473_17340_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237454
NZ_MDMX01000011.1\|WP_003727703.1\|14289_14727_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_MDMX01000011.1\|WP_003727710.1\|3012_3864_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381359
NZ_MDMX01000011.1\|WP_003727707.1\|6801_7464_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_MDMX01000011.1\|WP_003727704.1\|13172_13652_-\|hypothetical-protein	unknown	unknown	unknown
NZ_MDMX01000011.1\|WP_003727705.1\|8658_12663_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_MDMX01000011.1\|WP_003727709.1\|4429_4792_-\|hypothetical-protein	unknown	unknown	unknown
NZ_MDMX01000011.1\|WP_003728530.1\|15673_16471_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_MDMX01000011.1\|WP_003727706.1\|7791_8658_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_MDMX01000011.1\|WP_003726061.1\|3885_4308_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NZ_MDMX01000011.1\|WP_003727711.1\|1445_2972_+\|GW-domain-containing-glycosaminoglycan-binding-protein	unknown	unknown	gnl\|CDD\|224619
NZ_MDMX01000011.1\|WP_003726076.1\|14921_15668_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_MDMX01000011.1\|WP_003727712.1\|148_1177_-\|P-loop-NTPase	unknown	unknown	gnl\|CDD\|378455

Protein	Function_ID	Function_description	E-value
NZ_MDMX01000011.1\|WP_003723648.1\|7453_7795_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.60762e-45
NZ_MDMX01000011.1\|WP_003726075.1\|13875_14268_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	3.78102e-86
NZ_MDMX01000011.1\|WP_003727701.1\|16473_17340_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237454	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
NZ_MDMX01000011.1\|WP_003727706.1\|7791_8658_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.3879e-135
NZ_MDMX01000011.1\|WP_003727710.1\|3012_3864_-\|aldo/keto-reductase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	2.69962e-170
NZ_MDMX01000011.1\|WP_003727707.1\|6801_7464_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.92136e-112
NZ_MDMX01000011.1\|WP_003727705.1\|8658_12663_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_MDMX01000011.1\|WP_003728530.1\|15673_16471_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	6.0076e-53
NZ_MDMX01000011.1\|WP_003727703.1\|14289_14727_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.08607e-102
NZ_MDMX01000011.1\|WP_003726061.1\|3885_4308_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.55324e-42
NZ_MDMX01000011.1\|WP_003727711.1\|1445_2972_+\|GW-domain-containing-glycosaminoglycan-binding-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	1.89046e-69
NZ_MDMX01000011.1\|WP_003726076.1\|14921_15668_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	3.28185e-128
NZ_MDMX01000011.1\|WP_003727712.1\|148_1177_-\|P-loop-NTPase	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	1.70792e-114

>NZ_MDMX01000011.1|WP_003727709.1|4429_4792_-|hypothetical-protein
MKKTSIIFTFCALLLTACSTTTKETPRQTTEATGTIEQVETESILIKNFKIKNDNNTPELSVRFHISEKYHDETGNKIKRTELNKNDNIKIILTKDFPIQETSPAQIDPKYIQKIILLNK
>NZ_MDMX01000011.1|WP_003726061.1|3885_4308_-|MerR-family-transcriptional-regulator
MNIKQAADMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDLNWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKKVRELLVYKIDSYDSHIAQFKAGELNADNVEKLWKRDKF
>NZ_MDMX01000011.1|WP_003727710.1|3012_3864_-|aldo/keto-reductase
MKTVKLNNGVEVPILGFGTYQITDAAEAEQAVKDAIKTGYRHIDTAQSYMNEEAVGRGIVASGVDRKELFITTKIWVENVSYKGVMSSFDRSLKRLGLDYIDLLLIHQPFNDVYGAWIAMEELQASGKIRAIGVSNFSPDRVIDLAAFNEVTPQVNQIEVNPFQQQAANLAVLRKEGVTIEAWAPFAEGKNDIFNNPVLTKIGAKYGKSAAQVILRWLVEQDIIVLAKSVKPERMAQNLAIFDFELTEADKGEIASLDQGESQFFSHADPEMVKWMASRKLNV
>NZ_MDMX01000011.1|WP_003727711.1|1445_2972_+|GW-domain-containing-glycosaminoglycan-binding-protein
MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTAQVNLTTSQQAFIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSNNLFGIKGTYKGKSVSMGTMEASGSTTANFRVYPSWKESIEDHTALITENARYQDAVGETNYRKALQAIKDGGYATDPDYVSKLVAIIERYNLDKYDVIYDKIESNQSLAAIGTVAENKEQEVIWSAPYNTENANKIGTLENYLGRNLEISWEAKTEKGLWYFIRENNKDIGWINSNALKISYHQKEDENVHLTKYVDDLSAHVYRLPSPEKQFDNGTIAKYDRKALEVDKKTTRGGYAWFRISEGEKVIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATDNVWTAPFNTKNAEKLAPLADYDNEKLELVTRAKAGNTLWYQFKVDGKLVGWASEKDLNVFYTPAKEEPVKQVAYVKDPTAKLYNKPVESTSTNPKAVGFYYGKLLAVDKTATILGEDWLHLKDRQNSLGWIKAIDINS
>NZ_MDMX01000011.1|WP_003727712.1|148_1177_-|P-loop-NTPase
MLNEQQITRLLYRLQDPVLEASLEETEGVLEVQVLKETANIKIALADPAVETDHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSEASETKFLAIASGKGGVGKSTVSANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPRKENGQIIPVETHGIQMISMDFFVEQGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGTGDVALDIHTLIPKCNELIVTTPHYAAASVASRAGYMAAKNNHKIIGVIENMSYLTLADGQVLKVFGQGGGEKVAADLETQLLIQLPIEQPEPNGNGYVSALFNSSSTSGKAYKTLAEKIIPYLS
>NZ_MDMX01000011.1|WP_003727707.1|6801_7464_-|type-II-A-CRISPR-associated-protein-Csn2
MNFNFKLLDDPIQIEDSTIFVIEDVRVFANVTKFFYQYEETEELTIFDAKHQPLKSSELMLITDVLGHDINSAATLKLIYVDLEQQLNEKPEVKSMIDKLTATISELIGYELLEHELDLEEDEITVIELFKALGIKIETKSDTVFEKLIEIVQVYKYLSKKKLLVLINVCSYLTEEELLELRRYITLYQVKVLFIEPRKIKGSPQVTLDSDYFLHVENSV
>NZ_MDMX01000011.1|WP_003723648.1|7453_7795_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMLLMFDMPTDTAKERKAYRQFRRFILSEGFIMHQYSVYSKILLNGTASKAMLARLKQQNPKKGLITLLTVTEKQFARMVYLSGEQNKSIGNSDARLVFLGDDADEF
>NZ_MDMX01000011.1|WP_003727706.1|7791_8658_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVVVNSHSKLSYKNQHLVFKSAYQQEMIHLSEIDVLILETTDITLTTMLINCLVAENILILFCDDKRLPIGKVLPFYGRHDSSLQLTKQLEWDAELKAAVWTEIISQKILNQSTYLSMLNYDEKASSLINLHEALAVFDPTNREGHAARIYFNQLFGNDFTREQENDINSGLNYGYTLLLSIFARELVKSGCMTQFGLKHANQFNDFNLASDLMEPFRPLVDQIVYEKRNEDFQVIKRSLFELFTKQFDYNDQHMFLTNIASDYTKKIVKVLNEEREGVPEFRI
>NZ_MDMX01000011.1|WP_003727705.1|8658_12663_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKNPYTIGLDIGTNSVGWAVLTDQYDLVKRKMKVAGNSDKKQIKKNFWGVRLFDDGQTAVDRRMNRTARRRIERRRNRISYLQEIFAVEMANIDANFFCRLNDSFYVDSEKRNSRHPFFATIEEEVAYHKNYRTIYHLREELVNSSEKADLRLVYLALAHIIKYRGNFLIEGALDTKNTSVDEVYKQFIQTYNQVFMSNIEEGALAKVEENTEVASILAGKFTRREKFERILRLYPGEKSTGMFAQFISLIVGNKGNFQKVFNLVEKTDIECAKDSYEEDLEALLAIIGDEYAELFVAAKNTYNAVVLSSIITVTATETNAKLSASMIERFDAHEKELGELKAFIKLHLPKQYQEIFNNAEIDGYAGYIDGKTKQVDFYKYLKTTLENVEGADYFITKIEEENFLRKQRTFDNGVIPHQLHLEELEAILHQQAKYYPFLREGYDKIKSLVTFRIPYFVGPLANGQSEFAWLTRKDDGEIRPWNIEEKVDFGKSAVDFIEKMTNKDTYLPKENVLPKHSLCYQKYMVYNELTKIRYIDDQGKTNYFSGREKQQIFNDLFKQKRKVKKKDLELFLRNINHIESPTIEGLEDSFNASYATYHDLLKVGLKQEILDNPLNTEILEDIVKILTVFEDKRMIKEQLEQFSDVLDGVVLKKLERRHYTGWGRLSAKLLVGIRDKQSHLTILDYLMNDDGLNRNLMQLINDSNLSFKSIIEKEQVSTTDKDLQSIVADLAGSPAIKKGILQSLKIVDELVSIMGYPPQTIVVEMARENQTTGKGKNNSKPRYKSLEKAIKDFGSQILKEHPTDNQELKNNRLYLYYLQNGKDIYTGQELDIHNLSNYDIDHIVPQSFITDNSIDNLVLTSSAGNREKGGDVPPLEIVRKRKVFWEKLYQGNLMSKRKFDYLTKAERGGLTEADKARFIHRQLVETRQITKNVANILHQRFNKETDNHGNTMEQVRIVTLKSALVSQFRKQFQLYKVREVNDYHHAHDAYLNGVVANTLLKVYPQLEPEFVYGEYHQFDWFKANKATAKKQFYTNIMLFFAQKERIIDENGEILWDKKYLETIKKVLDYRQINIVKKTEIQKGEFSKATIKPKGNSSKLIPRKENWDPMKYGGLDSPNMAYAVIIEHAKGKKKIVIEKKLIQINIMERKMFEKDEEAFLEEKGYHQPKVLTKLPKYTLYECEKGRRRMLSSANEAQKGNQLVLSNHLVSLLYHAKNCEASDGKSLKYIEAHRETFSELLAQVSEFATKYTLADANLSKINNLFEQNKEGDIKAIAQSFVDLMAFNAMGAPASFKFFEATIDRKRYTNLKELLSSTIIYQSITGLYESRKRLDD
>NZ_MDMX01000011.1|WP_003727704.1|13172_13652_-|hypothetical-protein
MKGLIINKMHSGYFTNMSEVFNLLPEEELNCMWLVSSYECNIYPFEQIPFEKEYVWMKGTELKEILNQEEVMFIWGNFTSYPSNTKLKDILKYPIPFADGNSDLWKKDVHLSNPLSNTELISWDGSIFLTLSKNTTLIEGLKDNYPDSEDLSTYNSDID
>NZ_MDMX01000011.1|WP_003726075.1|13875_14268_-|30S-ribosomal-protein-S9
MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDPRMKERKKYGLKGARRAPQFSKR
>NZ_MDMX01000011.1|WP_003727703.1|14289_14727_-|50S-ribosomal-protein-L13
MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQQPEVYELRG
>NZ_MDMX01000011.1|WP_003726076.1|14921_15668_-|tRNA-pseudouridine(38-40)-synthase-TruA
MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQGLYLWRVDYE
>NZ_MDMX01000011.1|WP_003728530.1|15673_16471_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFAYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLTNGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRILRWRFADTFLLISLAVLSGLLFWLRS
>NZ_MDMX01000011.1|WP_003727701.1|16473_17340_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MEIKLEQLGYCYQKNSPFEKRALLDVNVSFDSGSYSAIIGHTGSGKSTLLQHLNALLMPTEGKITVGDREIIAGVKQKKLRDLRKKVGIVFQFPEAQLFEETVEKDICFGPMNFGVSEEDAKLRAKKVIYEVGLTEEILSRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPHGREEIMEMFYNLHKEKGLTTVLVTHSMEDAARYAEKIVLMKAGTVLQIGTPREIFAKPDELVDLGLSVPDVVRFQGLFERKFDVKLTKTCLTIDELTTEMAPYLAKGGA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_MDMX01000011_1	1.8\|5815\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5815-5844	30	KP399678	Listeria phage vB_LmoS_293, complete genome	1775-1804	0	1.0
NZ_MDMX01000011_1	1.20\|6608\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	6608-6637	30	KJ094028	Listeria phage LP-083-1 contig 2, partial genome	1396-1425	0	1.0
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	MN172529	Listeria phage LP-039, complete genome	36996-37025	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	MT438761	Listeria virus P61, complete genome	48737-48766	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	MT178766	Listeria virus P100plus, complete genome	3982-4011	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	NC_025440	Listeria phage WIL-1, complete genome	128854-128883	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	NC_047872	Listeria phage LMTA-94, complete genome	94435-94464	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	DQ003638	Listeria phage A511, complete genome	37493-37522	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	MT178767	Listeria virus P200, complete genome	3982-4011	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	DQ004855	Listeria bacteriophage P100, complete genome	3982-4011	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	KJ591604	Listeria phage LMTA-148, complete genome	44926-44955	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	KJ591605	Listeria phage LMTA-57, complete genome	105204-105233	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	KJ094033	Listeria phage LP-048, complete genome	39453-39482	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	KJ668715	Listeria phage LMTA-34, partial genome	81312-81341	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	NC_042048	Listeria phage LMTA-34, complete genome	52488-52517	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	102697-102726	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	FJ147488	Listeria phage 20422-1 terminase large subunit (terL) gene, partial cds; and unknown gene	1438-1467	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	NC_024360	Listeria phage LMSP-25, complete genome	52488-52517	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	36840-36869	1	0.967
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	KJ535721	Listeria phage List-36, complete genome	91531-91560	1	0.967
NZ_MDMX01000011_1	1.8\|5815\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5815-5844	30	MH341452	Listeria phage PSU-VKH-LP040, complete genome	1822-1851	1	0.967
NZ_MDMX01000011_1	1.8\|5815\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5815-5844	30	DQ003637	Listeria phage A500, complete genome	1779-1808	1	0.967
NZ_MDMX01000011_1	1.6\|5683\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5683-5712	30	KJ094028	Listeria phage LP-083-1 contig 2, partial genome	4152-4181	2	0.933
NZ_MDMX01000011_1	1.6\|5683\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5683-5712	30	DQ003641	Listeria phage P35, complete genome	20293-20322	2	0.933
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	38343-38372	2	0.933
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	MN128594	Listeria phage LP-066, complete genome	38445-38474	2	0.933
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	NC_041862	Listeria phage LP-064, complete genome	46957-46986	2	0.933
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	KJ094030	Listeria phage LP-083-2, complete genome	43626-43655	2	0.933
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	JX126918	Listeria phage LP-125, complete genome	46956-46985	2	0.933
NZ_MDMX01000011_1	1.7\|5749\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5749-5778	30	KJ094031	Listeria phage LP-124, complete genome	5741-5770	2	0.933
NZ_MDMX01000011_1	1.20\|6608\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	6608-6637	30	DQ003641	Listeria phage P35, complete genome	17537-17566	2	0.933
NZ_MDMX01000011_1	1.2\|5419\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5419-5448	30	DQ003637	Listeria phage A500, complete genome	11342-11371	3	0.9
NZ_MDMX01000011_1	1.2\|5419\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5419-5448	30	KP399678	Listeria phage vB_LmoS_293, complete genome	11363-11392	3	0.9
NZ_MDMX01000011_1	1.8\|5815\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5815-5844	30	NC_003216	Listeria phage A118, complete genome	1777-1806	3	0.9
NZ_MDMX01000011_1	1.8\|5815\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5815-5844	30	AJ242593	Bacteriophage A118 complete genome	1777-1806	3	0.9
NZ_MDMX01000011_1	1.8\|5815\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5815-5844	30	KJ094022	Listeria phage LP-030-3, complete genome	10201-10230	3	0.9
NZ_MDMX01000011_1	1.17\|6410\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	6410-6439	30	JB137888	Sequence 7 from Patent WO2012159774	1800-1829	3	0.9
NZ_MDMX01000011_1	1.2\|5419\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5419-5448	30	MH341452	Listeria phage PSU-VKH-LP040, complete genome	11377-11406	4	0.867
NZ_MDMX01000011_1	1.8\|5815\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5815-5844	30	MK448834	Streptococcus phage Javan91, complete genome	17230-17259	4	0.867
NZ_MDMX01000011_1	1.8\|5815\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5815-5844	30	MK449009	Streptococcus phage Javan88, complete genome	18934-18963	4	0.867
NZ_MDMX01000011_1	1.8\|5815\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5815-5844	30	MK448727	Streptococcus phage Javan291, complete genome	17813-17842	6	0.8
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NC_027341	Lactococcus phage WRP3, complete genome	17007-17036	6	0.8
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	KF926093	Lactococcus phage phiL47, complete genome	18163-18192	6	0.8
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP031267	Staphylococcus warneri strain 16A plasmid unnamed3	9937-9966	6	0.8
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP031267	Staphylococcus warneri strain 16A plasmid unnamed3	20386-20415	6	0.8
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP031267	Staphylococcus warneri strain 16A plasmid unnamed3	88820-88849	6	0.8
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP031267	Staphylococcus warneri strain 16A plasmid unnamed3	99301-99330	6	0.8
NZ_MDMX01000011_1	1.16\|6344\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	6344-6373	30	NZ_CP014688	Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence	320028-320057	6	0.8
NZ_MDMX01000011_1	1.1\|5353\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT	5353-5382	30	MN956514	Salmonella phage L6jm, complete genome	35199-35228	7	0.767
NZ_MDMX01000011_1	1.3\|5485\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5485-5514	30	MH358458	Escherichia phage phi G17, complete genome	44733-44762	7	0.767
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	CP003671	Staphylococcus warneri SG1 plasmid clone pvSw2 genomic sequence	6166-6195	7	0.767
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	ACSJ01000014	Clostridium phage D-1873 CLG.Contig159, whole genome shotgun sequence	2930-2959	7	0.767
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NC_007581	Clostridium phage c-st, complete genome	26984-27013	7	0.767
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	AP008983	Clostridium phage c-st genomic DNA, complete genome	26984-27013	7	0.767
NZ_MDMX01000011_1	1.15\|6278\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	6278-6307	30	NZ_CP019429	Pseudomonas sp. R76 plasmid p76, complete sequence	6120-6149	7	0.767
NZ_MDMX01000011_1	1.15\|6278\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	6278-6307	30	NZ_CP044458	Acinetobacter indicus strain B18 plasmid pB18-3, complete sequence	63045-63074	7	0.767
NZ_MDMX01000011_1	1.15\|6278\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	6278-6307	30	NZ_CP039144	Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence	119931-119960	7	0.767
NZ_MDMX01000011_1	1.20\|6608\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	6608-6637	30	NZ_CP018178	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-2, complete sequence	51326-51355	7	0.767
NZ_MDMX01000011_1	1.20\|6608\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	6608-6637	30	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	218447-218476	7	0.767
NZ_MDMX01000011_1	1.4\|5551\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5551-5580	30	NZ_CP044096	Streptococcus pyogenes strain FDAARGOS_668 plasmid unnamed3	439-468	8	0.733
NZ_MDMX01000011_1	1.8\|5815\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5815-5844	30	JX094500	Cronobacter phage CR5, complete genome	159870-159899	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	89650-89679	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP010578	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence	26190-26219	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP010579	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB92, complete sequence	54428-54457	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP020005	Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence	142875-142904	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP015177	Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence	65799-65828	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	503758-503787	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP044979	Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence	422300-422329	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP044980	Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence	51993-52022	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP010111	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-5, complete sequence	223589-223618	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP053953	Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence	294907-294936	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP014853	Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence	16209-16238	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	395528-395557	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	151358-151387	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP045607	Bacillus cereus strain SB1 plasmid p1, complete sequence	455414-455443	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP009636	Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence	171890-171919	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	43796-43825	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	406271-406300	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP053962	Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence	236266-236295	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NZ_CP053950	Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence	189154-189183	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	LC494302	Escherichia phage SP27 DNA, complete genome	6031-6060	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	MK817115	Escherichia phage vB_EcoM_phAPEC6, complete genome	123356-123385	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	NC_027364	Escherichia phage PBECO 4, complete genome	278627-278656	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	MH383160	Escherichia phage UB, complete genome	343694-343723	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	MK327931	Escherichia phage vB_EcoM_G17, complete genome	148842-148871	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	MT325768	Psychrobacillus phage Perkons, complete genome	10133-10162	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	LT603033	Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I	294515-294544	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	KM507819	Escherichia phage 121Q, complete genome	6031-6060	8	0.733
NZ_MDMX01000011_1	1.10\|5947\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5947-5976	30	MN693719	Marine virus AFVG_250M1014, complete genome	5373-5402	8	0.733
NZ_MDMX01000011_1	1.10\|5947\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5947-5976	30	NZ_CP014361	Methylomonas sp. DH-1 plasmid, complete sequence	82037-82066	8	0.733
NZ_MDMX01000011_1	1.13\|6145\|31\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	6145-6175	31	KP054477	Lactobacillus phage LfeInf, complete genome	32822-32852	8	0.742
NZ_MDMX01000011_1	1.15\|6278\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	6278-6307	30	LC425518	Uncultured phage DNA, contig: NODE577	9459-9488	8	0.733
NZ_MDMX01000011_1	1.16\|6344\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	6344-6373	30	KY794642	Staphylococcus phage vB_Sau_Clo6, complete genome	99049-99078	8	0.733
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	MK770119	Pantoea phage vB_PagS_AAS21, complete genome	71650-71679	9	0.7
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	MG983742	Bacillus phage Anath, complete genome	38218-38247	9	0.7
NZ_MDMX01000011_1	1.9\|5881\|30\|NZ_MDMX01000011\|CRISPRCasFinder,CRT,PILER-CR	5881-5910	30	MK448884	Streptococcus phage Javan246, complete genome	6318-6347	10	0.667

1. spacer 1.8|5815|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
gaggtcatcaaagaagacgatcatacgtgc	Protospacer
******************************

2. spacer 1.20|6608|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to KJ094028 (Listeria phage LP-083-1 contig 2, partial genome) position: , mismatch: 0, identity: 1.0

tgaaaatgccatccagatttcaaaatacgt	CRISPR spacer
tgaaaatgccatccagatttcaaaatacgt	Protospacer
******************************

3. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

4. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

5. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

6. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

7. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

8. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

9. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

10. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

11. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

12. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

13. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

14. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to KJ668715 (Listeria phage LMTA-34, partial genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

15. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

16. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

17. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to FJ147488 (Listeria phage 20422-1 terminase large subunit (terL) gene, partial cds; and unknown gene) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

18. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

19. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

20. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to KJ535721 (Listeria phage List-36, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

21. spacer 1.8|5815|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 1, identity: 0.967

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
gaggtcatcaaagaagacgatcatacgtgt	Protospacer
*****************************.

22. spacer 1.8|5815|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 1, identity: 0.967

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
gaggtcatcaaagaagacgatcatacgtgt	Protospacer
*****************************.

23. spacer 1.6|5683|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to KJ094028 (Listeria phage LP-083-1 contig 2, partial genome) position: , mismatch: 2, identity: 0.933

ttacttgatgtcaaacatgtaacgcggaag	CRISPR spacer
tttcttgatgtcaaacatgtaacgcggaat	Protospacer
** **************************

24. spacer 1.6|5683|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to DQ003641 (Listeria phage P35, complete genome) position: , mismatch: 2, identity: 0.933

ttacttgatgtcaaacatgtaacgcggaag	CRISPR spacer
tttcttgatgtcaaacatgtaacgcggaat	Protospacer
** **************************

25. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 2, identity: 0.933

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatatgtctctcttgatttttataccagta	Protospacer
****.******************** ****

26. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 2, identity: 0.933

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatatgtctctcttgatttttataccagta	Protospacer
****.******************** ****

27. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 2, identity: 0.933

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatatgtctctcttgatttttataccagta	Protospacer
****.******************** ****

28. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 2, identity: 0.933

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatatgtctctcttgatttttataccagta	Protospacer
****.******************** ****

29. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 2, identity: 0.933

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatatgtctctcttgatttttataccagta	Protospacer
****.******************** ****

30. spacer 1.7|5749|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 2, identity: 0.933

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatatgtctctcttgatttttataccagta	Protospacer
****.******************** ****

31. spacer 1.20|6608|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to DQ003641 (Listeria phage P35, complete genome) position: , mismatch: 2, identity: 0.933

tgaaaatgccatccagatttcaaaatacgt	CRISPR spacer
tgaaaatgctatccaaatttcaaaatacgt	Protospacer
*********.*****.**************

32. spacer 1.2|5419|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 3, identity: 0.9

actcaatcaaaacaggtataaactctttga	CRISPR spacer
attcaattaaaacaggtataaactctttta	Protospacer
*.*****.******************** *

33. spacer 1.2|5419|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 3, identity: 0.9

actcaatcaaaacaggtataaactctttga	CRISPR spacer
attcaattaaaacaggtataaactctttta	Protospacer
*.*****.******************** *

34. spacer 1.8|5815|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 3, identity: 0.9

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
gaagtcgtcaaagaagacgatcatacgtgt	Protospacer
**.***.**********************.

35. spacer 1.8|5815|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 3, identity: 0.9

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
gaagtcgtcaaagaagacgatcatacgtgt	Protospacer
**.***.**********************.

36. spacer 1.8|5815|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 3, identity: 0.9

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
gaagtcatcaaagaagatgatcatacgtgt	Protospacer
**.**************.***********.

37. spacer 1.17|6410|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 3, identity: 0.9

aaacagaaatgaaggatggtgaagaagttc	CRISPR spacer
aaacagaaataaaggatggcgaagaagtac	Protospacer
**********.********.******** *

38. spacer 1.2|5419|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 4, identity: 0.867

actcaatcaaaacaggtataaactctttga	CRISPR spacer
attcgattaaaacaggtataaactctttaa	Protospacer
*.**.**.********************.*

39. spacer 1.8|5815|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MK448834 (Streptococcus phage Javan91, complete genome) position: , mismatch: 4, identity: 0.867

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
aatgtcatcaaagaagatgatcatacatgc	Protospacer
.* **************.********.***

40. spacer 1.8|5815|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MK449009 (Streptococcus phage Javan88, complete genome) position: , mismatch: 4, identity: 0.867

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
aatgtcatcaaagaagatgatcatacatgc	Protospacer
.* **************.********.***

41. spacer 1.8|5815|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MK448727 (Streptococcus phage Javan291, complete genome) position: , mismatch: 6, identity: 0.8

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
aaagttgtgaaagaagatgatcatacgtgc	Protospacer
.*.**..* ********.************

42. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NC_027341 (Lactococcus phage WRP3, complete genome) position: , mismatch: 6, identity: 0.8

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
tattttgaattgtttcaagttcttcaattg	Protospacer
*.**** ********* ********* * .

43. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to KF926093 (Lactococcus phage phiL47, complete genome) position: , mismatch: 6, identity: 0.8

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
tattttgaattgtttcaagttcttcaattg	Protospacer
*.**** ********* ********* * .

44. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031267 (Staphylococcus warneri strain 16A plasmid unnamed3) position: , mismatch: 6, identity: 0.8

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
ttatttcaattttttctaattcttcaatta	Protospacer
*  ******** ******.******* * *

45. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031267 (Staphylococcus warneri strain 16A plasmid unnamed3) position: , mismatch: 6, identity: 0.8

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
ttatttcaattttttctaattcttcaatta	Protospacer
*  ******** ******.******* * *

46. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031267 (Staphylococcus warneri strain 16A plasmid unnamed3) position: , mismatch: 6, identity: 0.8

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
ttatttcaattttttctaattcttcaatta	Protospacer
*  ******** ******.******* * *

47. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031267 (Staphylococcus warneri strain 16A plasmid unnamed3) position: , mismatch: 6, identity: 0.8

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
ttatttcaattttttctaattcttcaatta	Protospacer
*  ******** ******.******* * *

48. spacer 1.16|6344|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014688 (Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence) position: , mismatch: 6, identity: 0.8

agggcttttattgtggatatagaagtctga	CRISPR spacer
acggctttttttgtggatgtagaagcgtta	Protospacer
* ******* ********.******. * *

49. spacer 1.1|5353|30|NZ_MDMX01000011|CRISPRCasFinder,CRT matches to MN956514 (Salmonella phage L6jm, complete genome) position: , mismatch: 7, identity: 0.767

ccctgttagcgatgggggggaagaatatta	CRISPR spacer
tactgttagtgatgagggggaagaagtttt	Protospacer
. *******.****.**********  **

50. spacer 1.3|5485|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MH358458 (Escherichia phage phi G17, complete genome) position: , mismatch: 7, identity: 0.767

gcatcgatagattaattccatcgtatttaa	CRISPR spacer
tattcagtacattaaatccatcgtatttaa	Protospacer
   **..** ***** **************

51. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to CP003671 (Staphylococcus warneri SG1 plasmid clone pvSw2 genomic sequence) position: , mismatch: 7, identity: 0.767

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
caatttcaattttttctaattcttcaatta	Protospacer
.. ******** ******.******* * *

52. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to ACSJ01000014 (Clostridium phage D-1873 CLG.Contig159, whole genome shotgun sequence) position: , mismatch: 7, identity: 0.767

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
gtttttcaattttttctaattcttctatca	Protospacer
  ********* ******.******  * *

53. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 7, identity: 0.767

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
gtttttcaattttttctaattcttctatca	Protospacer
  ********* ******.******  * *

54. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 7, identity: 0.767

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
gtttttcaattttttctaattcttctatca	Protospacer
  ********* ******.******  * *

55. spacer 1.15|6278|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019429 (Pseudomonas sp. R76 plasmid p76, complete sequence) position: , mismatch: 7, identity: 0.767

tttctgattgggtttgatgaattgactcgc	CRISPR spacer
ccgctgtttgagtttgatgaattgactcat	Protospacer
.. *** ***.*****************..

56. spacer 1.15|6278|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044458 (Acinetobacter indicus strain B18 plasmid pB18-3, complete sequence) position: , mismatch: 7, identity: 0.767

tttctgattgggtttgatgaattgactcgc	CRISPR spacer
tatcagatagggtttgatgaattgaagaac	Protospacer
* ** *** ****************   .*

57. spacer 1.15|6278|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039144 (Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence) position: , mismatch: 7, identity: 0.767

tttctgattgggtttgatgaattgactcgc	CRISPR spacer
tatcagatagggtttgatgaattgaagaac	Protospacer
* ** *** ****************   .*

58. spacer 1.20|6608|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018178 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-2, complete sequence) position: , mismatch: 7, identity: 0.767

tgaaaatgccatccagatttcaaaatacgt	CRISPR spacer
agaaaatgctattcagatttcaaaaagggc	Protospacer
 ********.**.************ . *.

59. spacer 1.20|6608|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 7, identity: 0.767

tgaaaatgccatccagatttcaaaatacgt	CRISPR spacer
agcaaatgccatccagctttcagaatttga	Protospacer
 * ************* *****.*** .*

60. spacer 1.4|5551|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044096 (Streptococcus pyogenes strain FDAARGOS_668 plasmid unnamed3) position: , mismatch: 8, identity: 0.733

acttgtcattggagaaatactttcatcagt	CRISPR spacer
acttgtgataggagaaatacttttgacgaa	Protospacer
****** ** *************.. *..

61. spacer 1.8|5815|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to JX094500 (Cronobacter phage CR5, complete genome) position: , mismatch: 8, identity: 0.733

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
cagctcatcaaagaagacggtcatgatacc	Protospacer
 ** ***************.****.    *

62. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

63. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010578 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

64. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010579 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB92, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

65. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020005 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

66. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015177 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

67. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

68. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044979 (Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

69. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044980 (Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

70. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010111 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-5, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

71. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053953 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

72. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014853 (Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

73. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

74. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

75. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045607 (Bacillus cereus strain SB1 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

76. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009636 (Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

77. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

78. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

79. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053962 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

80. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053950 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

81. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to LC494302 (Escherichia phage SP27 DNA, complete genome) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
atttttcaattgctgctagttcttcttcgt	Protospacer
  **********.* ********** *..

82. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MK817115 (Escherichia phage vB_EcoM_phAPEC6, complete genome) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
atttttcaattgctgctagttcttcttcgt	Protospacer
  **********.* ********** *..

83. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NC_027364 (Escherichia phage PBECO 4, complete genome) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
atttttcaattgctgctagttcttcttcgt	Protospacer
  **********.* ********** *..

84. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MH383160 (Escherichia phage UB, complete genome) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
atttttcaattgctgctagttcttcttcgt	Protospacer
  **********.* ********** *..

85. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MK327931 (Escherichia phage vB_EcoM_G17, complete genome) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
atttttcaattgctgctagttcttcttcgt	Protospacer
  **********.* ********** *..

86. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MT325768 (Psychrobacillus phage Perkons, complete genome) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
ataatataattgtttcaagttgttcattaa	Protospacer
    * .********* **** ********

87. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to LT603033 (Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
atttttcaattgctgctagttcttcttcgt	Protospacer
  **********.* ********** *..

88. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to KM507819 (Escherichia phage 121Q, complete genome) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
atttttcaattgctgctagttcttcttcgt	Protospacer
  **********.* ********** *..

89. spacer 1.10|5947|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MN693719 (Marine virus AFVG_250M1014, complete genome) position: , mismatch: 8, identity: 0.733

agtttaaagatgcggaagaattcgaccaaa	CRISPR spacer
agtttaaagatgcggaagaatctggaacgt	Protospacer
*********************..*.   .

90. spacer 1.10|5947|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014361 (Methylomonas sp. DH-1 plasmid, complete sequence) position: , mismatch: 8, identity: 0.733

agtttaaagatgcggaagaattcgaccaaa	CRISPR spacer
gattaaaagatgcggaaaaattcgatttga	Protospacer
..** ************.*******.. .*

91. spacer 1.13|6145|31|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to KP054477 (Lactobacillus phage LfeInf, complete genome) position: , mismatch: 8, identity: 0.742

catatctaaaatttgaccttgacaacgtgag	CRISPR spacer
gttatctaaagtttaaccttgacaacacggt	Protospacer
  ********.***.***********..*.

92. spacer 1.15|6278|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to LC425518 (Uncultured phage DNA, contig: NODE577) position: , mismatch: 8, identity: 0.733

tttctgattgggtttgatgaattgactcgc	CRISPR spacer
gcgaggataggttttgatgaattgactcac	Protospacer
 .   *** ** ****************.*

93. spacer 1.16|6344|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to KY794642 (Staphylococcus phage vB_Sau_Clo6, complete genome) position: , mismatch: 8, identity: 0.733

agggcttttattgtggatatagaagtctga	CRISPR spacer
attccttttattgtggatacagaagacctg	Protospacer
*   ***************.***** *. .

94. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MK770119 (Pantoea phage vB_PagS_AAS21, complete genome) position: , mismatch: 9, identity: 0.7

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
aacccgcaattgtttctaggtcttcaatat	Protospacer
 .... ************* ****** **

95. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MG983742 (Bacillus phage Anath, complete genome) position: , mismatch: 9, identity: 0.7

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
ccttttcaattatttcttgttcttccagcc	Protospacer
. *********.***** *******

96. spacer 1.9|5881|30|NZ_MDMX01000011|CRISPRCasFinder,CRT,PILER-CR matches to MK448884 (Streptococcus phage Javan246, complete genome) position: , mismatch: 10, identity: 0.667

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
gagagataattgtttctagttcttcgtttt	Protospacer
 .    .******************.**

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_MDMX01000010

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

39851 : 80102

Listeria_phage(96.55%)

holin,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003739618.1\|39851_40199_+	helix-turn-helix transcriptional regulator	A0A0U4JD08	Gordonia_phage	2.0e-06	42.6
WP_031642346.1\|40253_40730_-	competence protein ComK	NA	NA	NA	NA
WP_046377505.1\|40720_42079_-	recombinase family protein	Q8LTD8	Listeria_phage	2.7e-256	99.1
WP_061385617.1\|42141_42675_-	hypothetical protein	A0A0B5D0D1	Listeria_phage	5.2e-06	28.4
WP_069096418.1\|42689_43391_-	hypothetical protein	A0A0B5D125	Listeria_phage	2.8e-100	99.1
WP_003724016.1\|43449_44157_-	hypothetical protein	A0A0B5CTT6	Listeria_phage	2.8e-124	100.0
WP_003724015.1\|44171_44597_-	ImmA/IrrE family metallo-endopeptidase	A0A0B5CTZ7	Listeria_phage	2.2e-76	100.0
WP_003724014.1\|44612_45035_-	helix-turn-helix transcriptional regulator	A0A0B5CYL9	Listeria_phage	7.7e-69	98.6
WP_003733688.1\|45200_45410_+	helix-turn-helix domain-containing protein	A0A0B5D0D3	Listeria_phage	3.5e-30	95.6
WP_003733687.1\|45430_45625_+	hypothetical protein	A0A059T6E5	Listeria_phage	1.4e-25	95.3
WP_003733686.1\|45636_45921_+	hypothetical protein	A0A0B5D168	Listeria_phage	4.5e-41	85.1
WP_003722567.1\|45946_46228_+	hypothetical protein	A8ATX8	Listeria_phage	1.8e-37	95.7
WP_003733684.1\|46229_46427_-	hypothetical protein	Q9T179	Listeria_phage	4.0e-20	96.0
WP_061385619.1\|46490_47279_+	phage antirepressor KilAC domain-containing protein	Q9T178	Listeria_phage	1.0e-135	93.5
WP_061385620.1\|47402_47936_+	hypothetical protein	A0A0B5CU01	Listeria_phage	7.9e-79	87.6
WP_023552473.1\|47932_48148_+	hypothetical protein	Q9T176	Listeria_phage	5.7e-28	91.5
WP_061385621.1\|48256_48445_+	hypothetical protein	A0A0B5CU43	Listeria_phage	5.0e-28	96.8
WP_077952065.1\|48677_49637_+	YqaJ viral recombinase family protein	A8ATY5	Listeria_phage	8.7e-177	98.4
WP_031673697.1\|49636_50452_+	recombinase RecT	A8ATY6	Listeria_phage	2.2e-149	98.2
WP_069096419.1\|50471_51404_+	DnaD domain-containing protein	A8ATY7	Listeria_phage	1.5e-165	98.4
WP_069096420.1\|51400_52768_+	DNA (cytosine-5-)-methyltransferase	A0A141E1L1	Streptococcus_phage	1.1e-124	55.6
WP_069096421.1\|52764_53340_+	DUF1642 domain-containing protein	A8ATY9	Listeria_phage	8.3e-66	67.0
WP_069096422.1\|53336_53537_+	hypothetical protein	NA	NA	NA	NA
WP_069019675.1\|53529_53757_+	DUF3850 domain-containing protein	A0A059T699	Listeria_phage	5.1e-27	84.0
WP_046377519.1\|53768_54047_+	DUF1642 domain-containing protein	R4IBV9	Listeria_phage	3.9e-21	54.4
WP_069096423.1\|54043_54445_+	hypothetical protein	A0A059T6C9	Listeria_phage	2.2e-49	75.2
WP_069096424.1\|54444_54927_+	single-stranded DNA-binding protein	A8ASP5	Listeria_phage	1.6e-75	90.0
WP_010990207.1\|54945_55128_+	hypothetical protein	A8ASP6	Listeria_phage	2.9e-17	81.0
WP_069096425.1\|55072_55477_+	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	3.1e-59	88.8
WP_031645285.1\|55480_55873_+	DUF2481 family protein	A8ASP8	Listeria_phage	8.0e-20	45.0
WP_003722548.1\|55891_56047_+	hypothetical protein	A0A0B5D186	Listeria_phage	3.3e-22	96.1
WP_038409832.1\|56134_56707_+	sigma-70 family RNA polymerase sigma factor	A0A0B5D145	Listeria_phage	2.8e-90	87.9
WP_031670269.1\|56864_57497_+	hypothetical protein	A8AU05	Listeria_phage	4.0e-114	99.0
WP_012951944.1\|57578_57806_+	hypothetical protein	A8AU06	Listeria_phage	1.5e-34	100.0
WP_031641733.1\|57845_58631_+	hypothetical protein	A0A0B5CTX0	Listeria_phage	8.0e-128	95.9
WP_038409838.1\|58569_59889_+\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	1.7e-231	87.8
WP_023548504.1\|59903_61460_+	hypothetical protein	A0A0B5D0A6	Listeria_phage	1.9e-298	98.3
WP_023548506.1\|61464_62508_+	hypothetical protein	A0A0B5D111	Listeria_phage	3.7e-197	97.7
WP_003723788.1\|62603_63158_+	hypothetical protein	A8ATU9	Listeria_phage	8.8e-89	98.9
WP_003723787.1\|63180_64053_+	hypothetical protein	A0A0B5CTX8	Listeria_phage	2.3e-152	93.8
WP_003723786.1\|64066_64222_+	hypothetical protein	A0A0B5CYK6	Listeria_phage	1.0e-18	98.0
WP_003723785.1\|64222_64576_+	hypothetical protein	A8ATV2	Listeria_phage	8.4e-61	99.1
WP_003733695.1\|64575_64941_+	hypothetical protein	A8ATV3	Listeria_phage	9.9e-65	99.2
WP_003733696.1\|64930_65248_+	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	4.6e-50	96.2
WP_003725064.1\|65244_65616_+	hypothetical protein	A8ATV5	Listeria_phage	8.5e-64	100.0
WP_003733697.1\|65620_66310_+	Ig domain-containing protein	A8ATV6	Listeria_phage	2.8e-100	85.6
WP_003733698.1\|66365_66797_+	hypothetical protein	A8ATV7	Listeria_phage	4.0e-73	97.9
WP_077286899.1\|66793_67105_+	hypothetical protein	A0A0B5D116	Listeria_phage	3.4e-42	97.8
WP_069096426.1\|67109_71909_+\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	88.9
WP_003731724.1\|71905_73474_+\|tail	phage tail family protein	A8ATW0	Listeria_phage	4.7e-305	99.6
WP_015987413.1\|73486_75649_+\|tail	phage tail protein	A8ATW1	Listeria_phage	0.0e+00	100.0
WP_003733957.1\|75699_76005_+	hypothetical protein	A0A059T5E6	Listeria_phage	1.8e-43	100.0
WP_003723294.1\|76004_76286_+\|holin	phage holin	A8ATW3	Listeria_phage	3.0e-45	100.0
WP_069096427.1\|76285_76993_+	M15 family metallopeptidase	A8ATW4	Listeria_phage	5.3e-131	99.1
WP_003722520.1\|77033_77807_-	DUF3825 domain-containing protein	A8ATW5	Listeria_phage	9.5e-150	100.0
WP_003733661.1\|78081_78579_-	AP2 domain-containing protein	A8ATW6	Listeria_phage	3.8e-91	100.0
WP_003722518.1\|78603_79053_-	anti-CRISPR protein AcrIIA1	A8ATW7	Listeria_phage	2.4e-76	100.0
WP_003731276.1\|79053_79305_-	hypothetical protein	A8ATW8	Listeria_phage	2.0e-40	100.0
WP_009924649.1\|79336_79570_-	hypothetical protein	A8ATW9	Listeria_phage	9.2e-08	48.1
WP_026750194.1\|79868_80102_+	hypothetical protein	A0A059T6E1	Listeria_phage	6.8e-35	94.8

Anti-CRISPR protein detection

Acr_ID: NZ_MDMX01000010.1|WP_003731276.1|79053_79305_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_MDMX01000010.1|WP_003731276.1|79053_79305_-|hypothetical-protein

79053_79305_-

83 aa aa

AcrIIA12

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3641\|WP_003731276.1\|AcrIIA12\|II-A\|Verified\|Listeria-monocytogenes	1.0	1	1.0

39851-80102

7. NZ_MDMX01000031

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1837 : 21508

Streptococcus_phage(55.56%)

integrase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002389568.1\|1837_2518_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	2.6e-119	90.7
WP_003725285.1\|3695_4640_-	AAA family ATPase	A7KV75	Bacillus_phage	9.2e-46	36.8
WP_003750115.1\|4640_4829_-	hypothetical protein	NA	NA	NA	NA
WP_003725286.1\|4899_5409_-	hypothetical protein	NA	NA	NA	NA
WP_003725287.1\|5648_6512_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_003725288.1\|6907_7264_-	VOC family protein	NA	NA	NA	NA
WP_171817284.1\|8189_8537_-	quaternary ammonium compound efflux SMR transporter BcrC	NA	NA	NA	NA
WP_003725293.1\|8551_8869_-	quaternary ammonium compound efflux SMR transporter BcrB	NA	NA	NA	NA
WP_003725294.1\|8880_9420_-	efflux transporter transcriptional regulator BcrA	NA	NA	NA	NA
WP_157671086.1\|10066_10201_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_023559430.1\|10270_11884_-	DUF1738 domain-containing protein	NA	NA	NA	NA
WP_023559429.1\|11873_12098_-	hypothetical protein	NA	NA	NA	NA
WP_003725296.1\|12116_13475_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_002319817.1\|13502_14183_-\|transposase	IS6-like element ISS1N family transposase	A0A1X9I6C6	Streptococcus_phage	2.5e-109	84.1
WP_003725297.1\|14182_14686_-	AAA family ATPase	NA	NA	NA	NA
WP_003725298.1\|14678_16115_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2H4JGQ6	uncultured_Caudovirales_phage	9.4e-18	24.8
WP_003725299.1\|16273_16873_+	recombinase family protein	I1ZBD6	Salisaeta_icosahedral_phage	1.8e-15	31.8
WP_003726380.1\|17146_17506_+	winged helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	5.4e-23	48.2
WP_003726381.1\|17502_19620_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.3e-235	62.6
WP_003726382.1\|19852_20233_-	hypothetical protein	NA	NA	NA	NA
WP_023558764.1\|20264_20768_-\|integrase	tyrosine-type recombinase/integrase	D2XR58	Bacillus_phage	6.6e-19	35.9
WP_003726384.1\|20827_21508_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	1.2e-92	69.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

8. NZ_MDMX01000020

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

398832 : 457431

Streptococcus_phage(15.0%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003726416.1\|398832_400539_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_003726415.1\|400579_401842_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_003726414.1\|401855_402998_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_003727496.1\|403012_403801_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_003727497.1\|403814_404573_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	4.4e-22	42.1
WP_003723450.1\|404803_405361_-	ribosome recycling factor	NA	NA	NA	NA
WP_003723449.1\|405360_406089_-	UMP kinase	NA	NA	NA	NA
WP_003727498.1\|406381_406756_+	hypothetical protein	NA	NA	NA	NA
WP_012681273.1\|406733_407939_+	helicase SNF2	L0P6E9	Lactobacillus_phage	7.0e-91	46.6
WP_003727499.1\|407928_409233_+	DUF3440 domain-containing protein	A0A220GKF8	Streptococcus_phage	1.2e-133	52.1
WP_003726669.1\|409242_409749_+	ParB-like nuclease domain-containing protein	A0A220GKT8	Streptococcus_phage	1.4e-56	66.7
WP_003726668.1\|409770_410502_+	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	2.3e-81	58.0
WP_003726667.1\|410550_410790_-	YneF family protein	NA	NA	NA	NA
WP_003727500.1\|411010_413005_-	transketolase	NA	NA	NA	NA
WP_003727501.1\|413151_413379_-	DUF896 domain-containing protein	NA	NA	NA	NA
WP_003727502.1\|413473_413803_-	cell division suppressor protein YneA	NA	NA	NA	NA
WP_003723438.1\|413958_414573_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	9.3e-15	62.1
WP_003727503.1\|414603_415128_+	GNAT family N-acetyltransferase	G9BWD5	Planktothrix_phage	1.4e-06	30.5
WP_031644246.1\|415161_416457_-	arsenic transporter	A0A2H4PQU3	Staphylococcus_phage	5.7e-147	62.6
WP_003723435.1\|416600_417935_-	type I glutamate--ammonia ligase	M1NM71	Moumouvirus	4.2e-12	23.8
WP_003719570.1\|418005_418374_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003727505.1\|418575_419802_-	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_012681271.1\|419794_421018_-	GTPase HflX	NA	NA	NA	NA
WP_003719566.1\|421128_421362_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_003727506.1\|421483_422401_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003723738.1\|422527_424204_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_003726657.1\|424436_425135_-	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	6.4e-12	31.9
WP_003727507.1\|425347_427234_+	peptidoglycan O-acetyltransferase OatA	B5WZU0	Pseudomonas_phage	3.8e-43	32.2
WP_009917681.1\|427266_429087_-	class 1 internalin InlK	NA	NA	NA	NA
WP_003726814.1\|429714_430182_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_003727509.1\|430264_432724_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	1.1e-101	31.8
WP_003727510.1\|432720_434688_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	5.1e-123	42.5
WP_003727511.1\|434868_435276_-	CoA-binding protein	NA	NA	NA	NA
WP_003726698.1\|435433_436030_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003726697.1\|436071_436944_-	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003724130.1\|436946_437258_-	hypothetical protein	NA	NA	NA	NA
WP_003727513.1\|437280_437700_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003726695.1\|437802_438582_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_003727514.1\|438602_440012_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IBU3	Erwinia_phage	4.0e-29	26.0
WP_003724001.1\|440025_440565_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_003731303.1\|440585_441488_-	tyrosine recombinase XerC	A0A1B1IQT7	uncultured_Mediterranean_phage	1.6e-23	28.0
WP_003727516.1\|441770_443075_-\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_003727517.1\|443137_445216_-	type I DNA topoisomerase	A0A1V0SB35	Catovirus	5.4e-107	37.5
WP_003727518.1\|445488_446349_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	3.1e-40	47.2
WP_003727519.1\|446482_447268_-	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	6.7e-26	37.6
WP_003726396.1\|447264_448128_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003727520.1\|448137_448680_-	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003726394.1\|448781_449351_-	type I signal peptidase SipY	NA	NA	NA	NA
WP_003726393.1\|449385_449952_-	type I signal peptidase SipX	NA	NA	NA	NA
WP_003723886.1\|450070_451330_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_003723884.1\|451514_452798_-	trigger factor	NA	NA	NA	NA
WP_003727521.1\|452912_453851_-	hypothetical protein	NA	NA	NA	NA
WP_003727522.1\|454112_454778_-	hypothetical protein	NA	NA	NA	NA
WP_003727523.1\|454793_455327_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003727524.1\|455450_455666_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003727525.1\|455816_456212_+	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727526.1\|456291_457431_+\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

594353 : 601775

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012681222.1\|594353_595910_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.3e-17	28.1
WP_009917597.1\|596038_596443_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_003724634.1\|596502_596811_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003727000.1\|596823_597648_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	9.7e-68	52.6
WP_003721509.1\|597659_599150_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_003727001.1\|599358_600372_-	glycosyltransferase	A0A1V0SAH6	Catovirus	1.8e-10	31.2
WP_003727002.1\|600386_601370_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	2.0e-11	33.8
WP_003727003.1\|601391_601775_-	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	8.1e-17	40.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage