CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_MAKW01000022	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_22, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MAKW01000014	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_14, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MAKW01000003	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_3, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MAKW01000011	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_11, whole genome shotgun sequence	1 crisprs	NA	1	4	1	0
NZ_MAKW01000017	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_17, whole genome shotgun sequence	0 crisprs	cas3,DEDDh	0	0	1	0
NZ_MAKW01000007	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_7, whole genome shotgun sequence	0 crisprs	DinG	0	0	1	0
NZ_MAKW01000031	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_31, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MAKW01000026	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_26, whole genome shotgun sequence	0 crisprs	csa3	0	0	1	0
NZ_MAKW01000032	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_32, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MAKW01000019	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_19, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MAKW01000027	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_27, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MAKW01000023	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_23, whole genome shotgun sequence	1 crisprs	cas3	0	0	0	0
NZ_MAKW01000012	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_12, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MAKW01000001	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_1, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MAKW01000020	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_20, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MAKW01000010	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_10, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MAKW01000009	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_9, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MAKW01000005	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_5, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MAKW01000006	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_6, whole genome shotgun sequence	1 crisprs	WYL,csa3	0	0	1	0
NZ_MAKW01000016	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_16, whole genome shotgun sequence	0 crisprs	casR,WYL	0	0	0	0
NZ_MAKW01000018	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_18, whole genome shotgun sequence	0 crisprs	NA	0	0	2	0
NZ_MAKW01000008	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_8, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MAKW01000002	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_2, whole genome shotgun sequence	0 crisprs	csa3	0	0	2	0
NZ_MAKW01000030	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_30, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MAKW01000004	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_4, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MAKW01000028	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_28, whole genome shotgun sequence	0 crisprs	NA	0	0	1	2
NZ_MAKW01000021	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_21, whole genome shotgun sequence	0 crisprs	RT	0	0	0	0
NZ_MAKW01000015	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_15, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MAKW01000025	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_25, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MAKW01000029	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_29, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MAKW01000013	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_13, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MAKW01000024	Listeria monocytogenes strain WAPHL_LIS_A00021 SAMN03285319___contig_24, whole genome shotgun sequence	1 crisprs	csn2,cas2,cas1,cas9	1	10	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_MAKW01000006_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_MAKW01000006_1

50662-50823

Orphan

Consensus_repeat	Method
TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_MAKW01000006_1

>merge|NZ_MAKW01000006|1|50662-50823|CRISPRCasFinder
TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGGGATTGGTTGAATTTAATAATTTGTGCTTCCCTTTTCGGGTTGTTCGTCCACTTTTTTTAATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG

>NZ_MAKW01000006|1|1|50662-50823|CRISPRCasFinder
TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	GATTGGTTGAATTTAATAATTTGTGCTTCCCTTTTCGGGTTGTTCGTCCACT
TTTTTTAATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_MAKW01000006.1\|WP_003732486.1\|59416_60463_-\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
NZ_MAKW01000006.1\|WP_003772391.1\|53008_53182_-\|hypothetical-protein	unknown	unknown	unknown
NZ_MAKW01000006.1\|WP_003732480.1\|45929_46838_+\|Rgg/GadR/MutR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_MAKW01000006.1\|WP_003727923.1\|53284_54577_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_MAKW01000006.1\|WP_003727926.1\|50897_51131_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|224233
NZ_MAKW01000006.1\|WP_003732474.1\|33828_34212_-\|effector-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226231
NZ_MAKW01000006.1\|WP_010989995.1\|42271_45547_-\|carbohydrate-binding-protein	unknown	unknown	gnl\|CDD\|224418
NZ_MAKW01000006.1\|WP_003732481.1\|47373_49755_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NZ_MAKW01000006.1\|WP_003732476.1\|35952_36372_-\|hypothetical-protein	unknown	unknown	unknown
NZ_MAKW01000006.1\|WP_020246723.1\|57047_58238_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_MAKW01000006.1\|WP_003732485.1\|58372_59383_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_MAKW01000006.1\|WP_003723344.1\|35207_35777_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NZ_MAKW01000006.1\|WP_003727924.1\|52156_52876_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_MAKW01000006.1\|WP_003732478.1\|41267_42212_-\|lmo2445-family-class-3-internalin	unknown	unknown	gnl\|CDD\|275380
NZ_MAKW01000006.1\|WP_003723352.1\|49788_50535_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224561
NZ_MAKW01000006.1\|WP_003732482.1\|51230_51974_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224561
NZ_MAKW01000006.1\|WP_003732475.1\|34266_35163_-\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_MAKW01000006.1\|WP_003732483.1\|54712_56245_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_MAKW01000006.1\|WP_003723925.1\|56246_57002_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_MAKW01000006.1\|WP_003723350.1\|46893_47358_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|376590

Protein	Function_ID	Function_description	E-value
NZ_MAKW01000006.1\|WP_003732486.1\|59416_60463_-\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	4.30628e-92
NZ_MAKW01000006.1\|WP_003732480.1\|45929_46838_+\|Rgg/GadR/MutR-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.61922e-08
NZ_MAKW01000006.1\|WP_003727923.1\|53284_54577_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_MAKW01000006.1\|WP_003727926.1\|50897_51131_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|224233	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion].	6.04836e-13
NZ_MAKW01000006.1\|WP_003732474.1\|33828_34212_-\|effector-binding-domain-containing-protein	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.33846e-16
NZ_MAKW01000006.1\|WP_010989995.1\|42271_45547_-\|carbohydrate-binding-protein	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	0
NZ_MAKW01000006.1\|WP_003732481.1\|47373_49755_-\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NZ_MAKW01000006.1\|WP_020246723.1\|57047_58238_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_MAKW01000006.1\|WP_003732485.1\|58372_59383_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_MAKW01000006.1\|WP_003723344.1\|35207_35777_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	2.8348e-39
NZ_MAKW01000006.1\|WP_003727924.1\|52156_52876_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.44979e-18
NZ_MAKW01000006.1\|WP_003732478.1\|41267_42212_-\|lmo2445-family-class-3-internalin	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	5.15574e-06
NZ_MAKW01000006.1\|WP_003723352.1\|49788_50535_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	3.8639e-136
NZ_MAKW01000006.1\|WP_003732482.1\|51230_51974_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	1.94931e-122
NZ_MAKW01000006.1\|WP_003732475.1\|34266_35163_-\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	2.43734e-71
NZ_MAKW01000006.1\|WP_003732483.1\|54712_56245_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_MAKW01000006.1\|WP_003723925.1\|56246_57002_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	7.345e-145
NZ_MAKW01000006.1\|WP_003723350.1\|46893_47358_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	2.29197e-92

>NZ_MAKW01000006.1|WP_003723352.1|49788_50535_-|alpha/beta-fold-hydrolase
MKITPPQPFLFEKGKRAVLLLHGFTGSSADVRILGRFLQENNYTCYAPQYRGHGVSPDLLLKTGPNDWWEDVLEAYDHLKSLGYTEIAVAGLSLGGLFSLKLGFSRPLKGIIAMSTPTRMDSSSPIIQGFLDYVRNYKKLEGKTTEQIDAEMVAYKDAPMNTIAKLKDEISGVVAEIDMIYAPIMVVQGEKDDMVDVSGAQLIYDTVESTKKELHWFKESGHVITLDKERKEVNQAILTFLDSLDWQE
>NZ_MAKW01000006.1|WP_003732481.1|47373_49755_-|ribonuclease-R
MEQKQMEEKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRKNRYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRKGDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHKVIVELTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDVVDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDIEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEINQEGHVVNHEIFESIIKTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEARVVVDEDGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPKEDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEHSSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSDKQKRQREKPIDKTRNFKSSSKNNRNKRRTGKSEDVKPKTERKDDEWYTKPKKKKKKKPFYQGVAKESPKKKKRR
>NZ_MAKW01000006.1|WP_003723350.1|46893_47358_-|SsrA-binding-protein-SmpB
MPKGDGKLVAQNKKARHDYAIEETFEAGIVLQGTEIKSVRNARVNLKDSYARIDKGEIFLHNMHISPYEQGNRYNHDPLRTRKLLLHKKQISRLIGETKESGYSIVPLKMYIKDGYAKVLIGVARGKKKYDKRQDLKQKEAKRDIERAFKERQQ
>NZ_MAKW01000006.1|WP_003732480.1|45929_46838_+|Rgg/GadR/MutR-family-transcriptional-regulator
MQNIGDTLKFIRKSKNLTQQETCTNALSRSNYQKIENNKIMPSMDRFIQILLNFNMTLEEFEFVKRDFTPSPKENILYLYSKIITSSETDILLDVISKCDDYLANQNDIFISDIKASLEGILLAEKEHNFELAREKVAYIWDRLSEADELFWNDILILRNIFFIFENETAQHIVNRLISQLKKYRYLYPTLSIEISLHVNRATYLILDEEYELALHYIELSIKIAKHNHYYLQFCMAVAKKGIVLYKLDQKQQGKHFMQRALRVAKVLEEERILNGIKNEIDYFLHDELQDLSLNEFTKIDI
>NZ_MAKW01000006.1|WP_010989995.1|42271_45547_-|carbohydrate-binding-protein
MKRRTRKCSLVFILGILIFSCLSGFGTNVFAMDGEYHSPYGDDDLYTVQPTERSPRDPKAGEDVILNITTWPIENGQDVWVEWTKNGVAQENVTAAYDYNSGNNTYWKADLGKFEKGDEITYTTKGSTNGGTAYESGPFTFYVTDWEYVQDVTSVVDNGDSITLNMTATAGDFSPKLYLSFEDLDTLRMELSPTGKETGHAGKSGYTVEDTAEKVTVTTEDLSIEIQKSPYRMEVHQADGTLLTSEYTTANSLGWLTDGKNVINQYQNNFMTPSDEAFYGFGERYDTINQRGKDVETYVYNEYQDQAQTERTYLAVPFFVSANKYGMYVNSDFHSQFQMASKVEDKYSFVLDNDGDMTNMLDYYVISGKDQNDIVNNYTDITGKTTLLPKWAFGLWMSANEWDRESDVSSALSNAKANDIPATGFVLEQWSDEETYYIWNNATYTAKKNGEAFSYDDFTFNGKWTDPKGMVDSVHDAGMNIVLWQVPVLKDDGTVYEQRDNDEEYMISQGYSADDGTGAPYRVPASQWFGNGILLDFTNKDAVDWWTSQREYLLTEVGIDGFKTDGGEMVWGRDTTFSNGEKGQEMRNRYPTDYVSSYFDFAKSINPEAVSFSRSGTSGAQKSGIYWSGDQTSTFDSFQASLKAGLSASTSGVSYWAWDMAGFTGDYPTAELYKRATAMAAFAPIMQFHSEKSDPSPSEERSPWNAVARTGDETILPTFQKYLYTRMNLLPYIYTAAKDTADNGKSMMRQMAMDYPEDVNARDLDEQYMFGDDLLVAPIVQEGQTEKEVYLPEGEWVDIWNGGVHPGGETISYYADVDTLPVFAKAGAIIPMNMTDGYQLGQNVGNDLKSYDNLTFRVYPSGDSEYSFYDDVNGGEMRDISVSEDFANEKVSVDLPAMADETTMQVFSTEPTSVTIDGADVAKADTLDAFNEATTGYYYDTVQNLTYVKAAAKDAKQAIVLNGVNHAPYEAEFGHLTNVTTASDHAGYTGTGFVAGFDAEKEAVEFDIDAVDGASDYTMEVRYSAGVEDATRTVYINGKKQQITLPKTANWDTWNTVEVPVTLQAGNNQVVFDFEADDTAGINFDHVVIKK
>NZ_MAKW01000006.1|WP_003732478.1|41267_42212_-|lmo2445-family-class-3-internalin
MKKIIGLTFVAICCILFAPTIKAQADTVPLPAPIIEAFPVEAIAEAIAGELDKDSVNDTITQADLDTMTAIPLPSLGLTGEDLSVLNNEVFTNAIELAIWSNNIGELPDLSEALPALENIEANGANITVFPDANYPNLTNVDLSQNNFGFNIPKFVGMEGLVSINMENAGLSGYIAEDIWMNMPNLDSLILNENHLISIPEDIFLSQQLGTHSFANQTATYPPTTIKQGENLKVFVPFIYQALDFIAPSNHDLIIIKDNGRTLYEPPYPTYDGSYMYTIETAGLQPGEHLLEISLGYNSGEYTGWYDFPVTITE
>NZ_MAKW01000006.1|WP_003732476.1|35952_36372_-|hypothetical-protein
MYRLLSIAFFGIAVICLLFPWMSSGIDAATFELVYEPAYKLIWMQPIIIVGYLGFLCTIFIPKFQRGKNRIVPFIGILILVLGLLNLAVRPLFGFDSFNFSIIDAYVSELVEPAFLIAVSASILSLIMYAIYLKKSENL
>NZ_MAKW01000006.1|WP_003723344.1|35207_35777_-|YdcF-family-protein
MRSLRKIVIILIIIGFMYLLIVAAFMFSGSRTKPSENADTVLILGAKVKGNPAVPSLVLQERLDAAVAYLNEYPKAKVIVSGGQGADESATEASVMEEYLVNEGIARKRIETETKSKRTEENIKYSNAKFNLGKTVIVTSDYHMYRALMLAKRQGIDASGLPATSQTFAKYKGMMREVLSITYAWVFDH
>NZ_MAKW01000006.1|WP_003732475.1|34266_35163_-|YafY-family-transcriptional-regulator
MKLERILAILVMILERKVLASELAEKFEVSTRTIYRDMDTLLYAGFPVVALPGKNGGFTMLDTYKLATFTFSEAEKQILLEALEARSEFMLNDSQEILREKITLLQTEKPTSKHIFFDSATQHRQQIEAEVKRKIAYIQKAFTTNKQLEITYIAMSGAETTREISPQKLNLMDGSWYLEAYCHKRAAIRHFKLTRITSLKEIDKAIMEVEETEYQPAEMKRIVLEFPKNQLGKLLDYFLQEEMETGDDYVRVSFFYDLERNIIPFLLMFGSAVKILEPASLQKDYKSEVEKLYFNLNC
>NZ_MAKW01000006.1|WP_003732474.1|33828_34212_-|effector-binding-domain-containing-protein
MILQENIEIFGKKIRVNNDNFSPIAELWGDVMVDKPAGDIFAVYSNYASDYKGDYDLLVGTKDWDEEKSVLIEAGDYLVFSVDNASHKGVEETWQKIWARDSELKRAYKTDFEWYHTSGEIDIYISI
>NZ_MAKW01000006.1|WP_003727926.1|50897_51131_-|preprotein-translocase-subunit-SecG
MSTVLTVLLIIVSVLLITVIILQPGKSAGLSGAISGGAEQLFGKQKARGLELILHRTTIVLSVVFFAILIALAYFVQ
>NZ_MAKW01000006.1|WP_003732482.1|51230_51974_-|alpha/beta-fold-hydrolase
MSADRSFTLKAGNRAVLLLHGFAGTTEDVRELGEILAENGYTVHAPNFRGHGDEPAIFLKTTPEMWYEDAVAGYRQLEKDGYDEIAIVGVAMGGVFALKMAESFSPKAIVPLCANVNRKMRYIPIENYLTKQLKKQGIVEQEADQMLKNYLPEIDVMTEARATFYKNVARDIEKIHVPTMIGQGCQDEEIDADNANYIFKHIHTNDKQLCFYAGSGHDIVNDCEKDILEEDLIYFLDDLVWLEEKVV
>NZ_MAKW01000006.1|WP_003727924.1|52156_52876_-|alpha/beta-hydrolase
MIAEINGINLFYQIIGKGEPILLIHGNGQNHRSLKRMIDDLSTNHQVIAVDSRAHGKSEAGNTPLDFEVMALDMLSLLDYLKIDKYKVIGYSDGGIVALVMGKMQPNRQIASVVIGTNYHVNQIRFLPDLFCRVAYGAAFLLAPFSRFFERMKRQLALTIYHPHMSEADLQKISAPLLAVVGEYDLISSKDTKKMVHSVQHGEMVIVRNGLHYLPRQKPKQLLQLIHSFFSNLSAEIHK
>NZ_MAKW01000006.1|WP_003772391.1|53008_53182_-|hypothetical-protein
MLMKVKNSQASKVLETPKIKDAVVHEKSHPLAEKHSVQKKIINADMPQQQFHRRLMK
>NZ_MAKW01000006.1|WP_003727923.1|53284_54577_-|phosphopyruvate-hydratase
MSIITEVYAREVLDSRGNPTVEVEVYTEAGAFGRALVPSGASTGEYEAVELRDGDKARYLGKGVLKAVENVNDIIADKIIGFDVTDQIGIDKAMIELDGTPNKGKLGANAILGVSLAAARAAADELGVHLYEYLGGVNGKVLPVPMMNILNGGEHADNNVDVQEFMVMPVGAPNFKEALRMGAEILHALKAVLKGKGLNTGVGDEGGFAPNLKSNEEALETIMQAIKDAGYKPGEEVKLAMDAASSEFYNRETGKYELKGEGVTRTSEEMVTWYEEMITKYPIISIEDGLDENDWDGFKLLTERIGDRVQLVGDDLFVTNTTKLKEGIEKGIANSILIKVNQIGTLTETLDAIEMAKRAGYTAVISHRSGETEDSTIADIAVATNAGQIKTGAPTRTDRVAKYNQLLRIEDNLADLAEYHGNDTFYNLKK
>NZ_MAKW01000006.1|WP_003732483.1|54712_56245_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MSKSPVAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGELKAAGLDVGLPEGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLEKAISDLNYGAIATVSGRFYAMDRDKRWERVEKAYKAIVSAEGEKFEDPIELVKASYANDKNDEFVVPAIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEWDHFDRGADHPKNIKFVTMTLYNPSVDAEVAFEPIEMKNVIGEVLSNEGLAQLRIAETEKYPHVTFFMNGGRNEEFPGESRILINSPKVETYDLQPEMSAYEVTDALVEDIKNDKHDAIILNFANPDMVGHSGMLEPTIKAIEAVDENLGRVVDLILEKGGSAIIFADHGNSETMSTPEGKPHTAHTTVPVPVIVTKKGVTLREGGRLADVAPTMLDLLGVKKPAEMTGESLIQK
>NZ_MAKW01000006.1|WP_003723925.1|56246_57002_-|triose-phosphate-isomerase
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTNLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
>NZ_MAKW01000006.1|WP_020246723.1|57047_58238_-|phosphoglycerate-kinase
MAKKVVTDLDLKDKKVLVRVDFNVPMKDGKITNDNRIVAALPTIEYILEQNGKAILFSHLGKVKTEEDKEGKSLRPVAARLSELLGKEVKFVPTTRGPELEKAIDELKDGEVLLFENTRFEDIDGKKESKNDPELGKYWASLGDVFVNDAFGTAHRAHASNVGIASNLESAAGFLMEKEIKFIGGVVDNPARPLVAILGGAKVSDKIGVIENLLTKADKVLVGGGMTFTFMAAQGQEIGKSLLEADKVELAKGLLEKAGDKLVLPVDAVVSKEFSNDAPFHTVSADSIPADEMGLDIGQATIDLFTKELQGAKTVIWNGPMGVFELSNFAKGTIGVCEAIANLTDATTIIGGGDSAAAAMDLGFADKFTHISTGGGASLEYLEGKELPGVASISDK
>NZ_MAKW01000006.1|WP_003732485.1|58372_59383_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQGRFDGEVEVHDGFFKVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTAQDKAELHIKAGAKKVVISAPATGDMKTIVYNVNHETLDGTETVISGASCTTNCLAPMAKVLEDKFGVVEGLMTTIHAYTGDQNTLDAPHPKGDFRRARAAAENIIPNTTGAAKAIGEVLPTLKGKLDGAAQRVPVPTGSLTELVTVLDKKVTVDEVNAAMEAASDPETFGYTSDQVVSSDIKGMTFGSLFDETQTKVLTVGDQQLVKTVAWYDNEMSYTAQLVRTLEYFAKIAK
>NZ_MAKW01000006.1|WP_003732486.1|59416_60463_-|sugar-binding-transcriptional-regulator
MSDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGMLGMSERVLRGEVEFLKAQGLVEIASSGMTVTKEGLVVFRDLESVMNQLSGLHSMEEQLAKKLQIKKCLVVQGDSDDTPWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEMMTTDFAKGRELLFVPGRGGIGEDLDNQANTICDKMATKTNTKHRVLYVPEQLGEEAYRSLLKEPAIQEGLRLVQSANAIILGIGDALAMAKRRHTGEDVLEKIIHRKAVGEAFGYYFDEQGEVVHKVPTFGLQFEDLAQIPHIIAVAGGTSKAKAIKSYMKSAPKNTILITDEGAAKSLLKGSNTLLK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

73594 : 81438

Streptococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722604.1\|73594_74566_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003722605.1\|74573_75542_-	YvcK family protein	A1IMD5	Streptococcus_phage	6.7e-68	43.3
WP_010990001.1\|75543_76419_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	3.2e-08	29.7
WP_020246726.1\|76526_78257_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	2.3e-175	54.0
WP_020246727.1\|78298_79360_-	galactose mutarotase	NA	NA	NA	NA
WP_009924988.1\|79376_80360_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.1e-52	38.4
WP_003722610.1\|80478_81438_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_MAKW01000003

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

233 : 18178

Listeria_phage(54.55%)

holin,plate,terminase,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003733521.1\|233_500_-\|holin	phage holin	A0A059T684	Listeria_phage	9.8e-38	93.1
WP_039177480.1\|499_802_-	hypothetical protein	A0A059T5E6	Listeria_phage	2.7e-39	94.1
WP_003722524.1\|842_1001_-	hypothetical protein	Q9T1A1	Listeria_phage	6.0e-19	100.0
WP_003722525.1\|1005_1323_-	hypothetical protein	Q9T1A2	Listeria_phage	6.2e-55	100.0
WP_078311862.1\|1334_2465_-\|plate	BppU family phage baseplate upper protein	Q9T1A3	Listeria_phage	4.7e-89	96.6
WP_031669099.1\|2479_4654_-\|tail	phage tail protein	R4IDV9	Listeria_phage	1.1e-91	33.6
WP_054314970.1\|4650_5394_-	hypothetical protein	A0A0A8WHP7	Clostridium_phage	4.7e-29	32.8
WP_054314971.1\|5408_9212_-\|tail	phage tail tape measure protein	A0A1Q1PW35	Staphylococcus_phage	2.4e-84	41.6
WP_054314972.1\|9232_9505_-	hypothetical protein	NA	NA	NA	NA
WP_039120134.1\|9579_9957_-	hypothetical protein	NA	NA	NA	NA
WP_039120136.1\|10038_10512_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_039120137.1\|10514_10916_-	hypothetical protein	NA	NA	NA	NA
WP_052237744.1\|10915_11263_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_031669091.1\|11262_11634_-	hypothetical protein	NA	NA	NA	NA
WP_140946992.1\|11620_12322_-	hypothetical protein	NA	NA	NA	NA
WP_039120144.1\|12426_12792_-	hypothetical protein	NA	NA	NA	NA
WP_157009363.1\|12804_12975_-	hypothetical protein	NA	NA	NA	NA
WP_054314974.1\|12976_13993_-\|capsid	major capsid protein	A0A142F1M0	Bacillus_phage	1.7e-85	48.1
WP_031669088.1\|13997_14375_-	hypothetical protein	A0A142F1L9	Bacillus_phage	1.3e-32	59.1
WP_031669087.1\|14386_14932_-	hypothetical protein	NA	NA	NA	NA
WP_077944801.1\|16555_18178_-\|terminase	phage terminase large subunit	A0A142F1L6	Bacillus_phage	9.3e-163	51.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_MAKW01000011

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_MAKW01000011_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_MAKW01000011_1

30178-30464

Orphan

I-A

Consensus_repeat	Method
GTTTTAGTTACTTATTGTGAAATGTAAAT	PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	CRT
TTTTAGTTACTTATTGTGAAATGTAAAT	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_MAKW01000011_1

>merge|NZ_MAKW01000011|1|30178-30464|PILER-CR,CRT,CRISPRCasFinder
GTTTTAGTTACTTATTGTGAAATGTAAATTTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAAGTTTTAGTTACTTATTGTGAAATGTAAATTTTTCTACTCCTGCTTCTAAAATGTCGTTTATAAGTTTTAGTTACTTATTGTGAAATGTAAATCTAAAACATCCTTCACTGTATCAACTCCTTTCTATATTTTAGTTACTTATTGTGAAATGTAAATACAATAATAGGATATTTTGGATTTGTCTGCGTTCCTGTTTTAGTTACTTATTATGAAATGTAAAT

>NZ_MAKW01000011|1|1|30178-30464|PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT
ATTTTAGTTACTTATTGTGAAATGTAAAT	ACAATAATAGGATATTTTGGATTTGTCTGCGTTCCT
GTTTTAGTTACTTATTATGAAATGTAAAT

>NZ_MAKW01000011|1|1|30178-30464|CRT
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT
ATTTTAGTTACTTATTGTGAAATGTAAAT	ACAATAATAGGATATTTTGGATTTGTCTGCGTTCCT
GTTTTAGTTACTTATTATGAAATGTAAAT

>NZ_MAKW01000011|1|1|30179-30464|CRISPRCasFinder
TTTTAGTTACTTATTGTGAAATGTAAAT	TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAAG
TTTTAGTTACTTATTGTGAAATGTAAAT	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAAG
TTTTAGTTACTTATTGTGAAATGTAAAT	CTAAAACATCCTTCACTGTATCAACTCCTTTCTATA
TTTTAGTTACTTATTGTGAAATGTAAAT	ACAATAATAGGATATTTTGGATTTGTCTGCGTTCCTG
TTTTAGTTACTTATTATGAAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_MAKW01000011.1\|WP_003733188.1\|31540_32221_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_MAKW01000011.1\|WP_009930754.1\|30855_31434_+\|hypothetical-protein	unknown	unknown	unknown
NZ_MAKW01000011.1\|WP_003733187.1\|32611_33070_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_MAKW01000011.1\|WP_003721289.1\|24684_25152_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_MAKW01000011.1\|WP_031644454.1\|39028_40444_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_MAKW01000011.1\|WP_003721311.1\|38512_38881_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NZ_MAKW01000011.1\|WP_003721291.1\|25577_26228_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_MAKW01000011.1\|WP_003733192.1\|24054_24657_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
NZ_MAKW01000011.1\|WP_003733193.1\|21990_24051_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_MAKW01000011.1\|WP_003721293.1\|27286_27580_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_MAKW01000011.1\|WP_003721303.1\|37416_38232_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_MAKW01000011.1\|WP_003733185.1\|35865_37296_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_MAKW01000011.1\|WP_003721290.1\|25168_25567_+\|hypothetical-protein	unknown	unknown	unknown
NZ_MAKW01000011.1\|WP_003721294.1\|27594_28866_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_MAKW01000011.1\|WP_003733194.1\|21231_21882_+\|transaldolase	unknown	unknown	gnl\|CDD\|223254
NZ_MAKW01000011.1\|WP_003721295.1\|29005_29941_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_MAKW01000011.1\|WP_003721298.1\|32245_32605_-\|Lin0512-family-protein	unknown	unknown	gnl\|CDD\|131113
NZ_MAKW01000011.1\|WP_003721292.1\|26224_27271_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_MAKW01000011.1\|WP_031668100.1\|33451_35287_+\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NZ_MAKW01000011.1\|WP_003721301.1\|35387_35819_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180

Protein	Function_ID	Function_description	E-value
NZ_MAKW01000011.1\|WP_003733188.1\|31540_32221_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	6.36121e-61
NZ_MAKW01000011.1\|WP_003733187.1\|32611_33070_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	1.03599e-12
NZ_MAKW01000011.1\|WP_003721289.1\|24684_25152_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	3.45565e-37
NZ_MAKW01000011.1\|WP_031644454.1\|39028_40444_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.42897e-80
NZ_MAKW01000011.1\|WP_003721291.1\|25577_26228_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	4.74405e-108
NZ_MAKW01000011.1\|WP_003733192.1\|24054_24657_+\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	1.15952e-75
NZ_MAKW01000011.1\|WP_003733193.1\|21990_24051_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	3.95572e-80
NZ_MAKW01000011.1\|WP_003721293.1\|27286_27580_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
NZ_MAKW01000011.1\|WP_003721311.1\|38512_38881_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	1.10012e-41
NZ_MAKW01000011.1\|WP_003733185.1\|35865_37296_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	1.97856e-100
NZ_MAKW01000011.1\|WP_003733194.1\|21231_21882_+\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	1.91243e-61
NZ_MAKW01000011.1\|WP_003721294.1\|27594_28866_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
NZ_MAKW01000011.1\|WP_003721303.1\|37416_38232_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NZ_MAKW01000011.1\|WP_003721295.1\|29005_29941_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	2.38027e-153
NZ_MAKW01000011.1\|WP_003721298.1\|32245_32605_-\|Lin0512-family-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	5.62162e-67
NZ_MAKW01000011.1\|WP_003721292.1\|26224_27271_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
NZ_MAKW01000011.1\|WP_031668100.1\|33451_35287_+\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	8.29186e-120
NZ_MAKW01000011.1\|WP_003721301.1\|35387_35819_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27

>NZ_MAKW01000011.1|WP_003721295.1|29005_29941_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSSIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NZ_MAKW01000011.1|WP_003721294.1|27594_28866_+|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>NZ_MAKW01000011.1|WP_003721293.1|27286_27580_+|PTS-sugar-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>NZ_MAKW01000011.1|WP_003721292.1|26224_27271_+|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>NZ_MAKW01000011.1|WP_003721291.1|25577_26228_+|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
>NZ_MAKW01000011.1|WP_003721290.1|25168_25567_+|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>NZ_MAKW01000011.1|WP_003721289.1|24684_25152_+|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQDKEKLLTEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>NZ_MAKW01000011.1|WP_003733192.1|24054_24657_+|SIS-domain-containing-protein
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>NZ_MAKW01000011.1|WP_003733193.1|21990_24051_+|BglG-family-transcription-antiterminator
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKDPNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>NZ_MAKW01000011.1|WP_003733194.1|21231_21882_+|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRILELTDKQVFVQTVGFTYEEILADARMLLTMFGKDKIAIKIPAHEAGTNVIDTLKKEDKTIQILGTAIYSADQAITAALVGADFVAPYVNRMSAANIDPFKEISQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK
>NZ_MAKW01000011.1|WP_009930754.1|30855_31434_+|hypothetical-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTITIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>NZ_MAKW01000011.1|WP_003733188.1|31540_32221_+|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLSFFPESLNVFHWHQDTFALPAGATRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILQIDEAFITPGKYVQSVEVMQEKDVPEDNKQMLEAILDYLINPKTI
>NZ_MAKW01000011.1|WP_003721298.1|32245_32605_-|Lin0512-family-protein
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>NZ_MAKW01000011.1|WP_003733187.1|32611_33070_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTAAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NZ_MAKW01000011.1|WP_031668100.1|33451_35287_+|lmo0514-family-class-1-internalin
MKKALKLFLAMICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSINNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSARLSITEDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVNPVPPTPEVKPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>NZ_MAKW01000011.1|WP_003721301.1|35387_35819_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_MAKW01000011.1|WP_003733185.1|35865_37296_-|CapA-family-protein
MKRRTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKADEKALGKVYPDFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYNNCLPWFKSDDYTVINAESAFTNATKAENKMWRIKSDPAHVAFLPASGVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_MAKW01000011.1|WP_003721303.1|37416_38232_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_MAKW01000011.1|WP_003721311.1|38512_38881_-|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGMAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVVVLLV
>NZ_MAKW01000011.1|WP_031644454.1|39028_40444_+|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGMGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_MAKW01000011_1	1.4\|30400\|36\|NZ_MAKW01000011\|PILER-CR,CRT	30400-30435	36	NZ_MAKW01000011.1	179098-179133	0	1.0

1. spacer 1.4|30400|36|NZ_MAKW01000011|PILER-CR,CRT matches to position: 179098-179133, mismatch: 0, identity: 1.0

acaataataggatattttggatttgtctgcgttcct	CRISPR spacer
acaataataggatattttggatttgtctgcgttcct	Protospacer
************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_MAKW01000011_1	1.3\|30336\|35\|NZ_MAKW01000011\|PILER-CR,CRT	30336-30370	35	NC_021539	Listeria phage LP-030-2, complete genome	18926-18960	1	0.971
NZ_MAKW01000011_1	1.3\|30336\|35\|NZ_MAKW01000011\|PILER-CR,CRT	30336-30370	35	KJ094023	Listeria phage LP-101, complete genome	22882-22916	1	0.971
NZ_MAKW01000011_1	1.7\|30336\|36\|NZ_MAKW01000011\|CRISPRCasFinder	30336-30371	36	NC_021539	Listeria phage LP-030-2, complete genome	18926-18961	1	0.972
NZ_MAKW01000011_1	1.7\|30336\|36\|NZ_MAKW01000011\|CRISPRCasFinder	30336-30371	36	KJ094023	Listeria phage LP-101, complete genome	22882-22917	1	0.972
NZ_MAKW01000011_1	1.1\|30207\|37\|NZ_MAKW01000011\|PILER-CR,CRT	30207-30243	37	NC_009812	Listeria phage B025, complete genome	30705-30741	2	0.946
NZ_MAKW01000011_1	1.3\|30336\|35\|NZ_MAKW01000011\|PILER-CR,CRT	30336-30370	35	NC_009812	Listeria phage B025, complete genome	23381-23415	2	0.943
NZ_MAKW01000011_1	1.7\|30336\|36\|NZ_MAKW01000011\|CRISPRCasFinder	30336-30371	36	NC_009812	Listeria phage B025, complete genome	23381-23416	2	0.944
NZ_MAKW01000011_1	1.5\|30207\|38\|NZ_MAKW01000011\|CRISPRCasFinder	30207-30244	38	NC_009812	Listeria phage B025, complete genome	30704-30741	3	0.921

1. spacer 1.3|30336|35|NZ_MAKW01000011|PILER-CR,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.971

ctaaaacatccttcactgtatcaactcctttctat	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctat	Protospacer
******************* ***************

2. spacer 1.3|30336|35|NZ_MAKW01000011|PILER-CR,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.971

ctaaaacatccttcactgtatcaactcctttctat	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctat	Protospacer
******************* ***************

3. spacer 1.7|30336|36|NZ_MAKW01000011|CRISPRCasFinder matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.972

ctaaaacatccttcactgtatcaactcctttctata	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctata	Protospacer
******************* ****************

4. spacer 1.7|30336|36|NZ_MAKW01000011|CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.972

ctaaaacatccttcactgtatcaactcctttctata	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctata	Protospacer
******************* ****************

5. spacer 1.1|30207|37|NZ_MAKW01000011|PILER-CR,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.946

tttatttctcctacgcttttcttatttctgtaaataa	CRISPR spacer
tttatttctcctgcgcttttcttatttttgtaaataa	Protospacer
************.**************.*********

6. spacer 1.3|30336|35|NZ_MAKW01000011|PILER-CR,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.943

ctaaaacatccttcactgtatcaactcctttctat	CRISPR spacer
ctaaaacatccttcactatctcaactcctttctat	Protospacer
*****************.* ***************

7. spacer 1.7|30336|36|NZ_MAKW01000011|CRISPRCasFinder matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.944

ctaaaacatccttcactgtatcaactcctttctata	CRISPR spacer
ctaaaacatccttcactatctcaactcctttctata	Protospacer
*****************.* ****************

8. spacer 1.5|30207|38|NZ_MAKW01000011|CRISPRCasFinder matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 3, identity: 0.921

tttatttctcctacgcttttcttatttctgtaaataag	CRISPR spacer
tttatttctcctgcgcttttcttatttttgtaaataaa	Protospacer
************.**************.*********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

163551 : 194403

Listeria_phage(53.33%)

terminase,protease,tail,holin,capsid,head,integrase,portal

attL 167784:167798|attR 179708:179722

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033922907.1\|163551_164703_-\|integrase	site-specific integrase	A8ATX2	Listeria_phage	3.4e-87	46.3
WP_033922905.1\|164724_165438_-	hypothetical protein	A0A0B5CTT6	Listeria_phage	8.5e-36	35.7
WP_012951298.1\|165492_165993_-	hypothetical protein	A0A1S7FYX8	Listeria_phage	1.4e-13	31.9
WP_012951299.1\|166005_166332_-	helix-turn-helix transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	2.5e-11	35.1
WP_014930668.1\|166505_166697_+	helix-turn-helix transcriptional regulator	Q0H243	Geobacillus_phage	8.1e-10	57.6
WP_012951301.1\|166794_167121_+	DUF771 domain-containing protein	A0A2H4J474	uncultured_Caudovirales_phage	4.9e-15	41.1
WP_033922901.1\|167293_168334_+	conserved phage C-terminal domain-containing protein	A0A1W6JNI1	Staphylococcus_phage	5.5e-52	49.8
167784:167798	attL	NA	NA	NA	NA
WP_033922900.1\|168335_168692_+	MerR family transcriptional regulator	A8ATZ8	Listeria_phage	1.9e-07	39.6
WP_033922898.1\|168688_169105_+	hypothetical protein	NA	NA	NA	NA
WP_023552249.1\|169101_169278_+	hypothetical protein	A8ATL8	Listeria_phage	1.7e-14	70.7
WP_033922897.1\|169291_169816_+	hypothetical protein	A0A059T5F9	Listeria_phage	2.0e-95	96.0
WP_033922895.1\|169824_170289_+	class I SAM-dependent methyltransferase	A0A059T693	Listeria_phage	1.5e-86	97.4
WP_171893888.1\|170285_170456_+	hypothetical protein	A8ASN5	Listeria_phage	4.5e-20	94.6
WP_033922893.1\|170508_170988_+	single-stranded DNA-binding protein	A8ASP5	Listeria_phage	2.7e-70	83.1
WP_033922891.1\|171228_171414_+	hypothetical protein	NA	NA	NA	NA
WP_033922889.1\|171484_172003_+	RNA polymerase sigma factor like domain protein	NA	NA	NA	NA
WP_033922887.1\|171999_172542_+\|integrase	tyrosine-type recombinase/integrase	A0A1B1P746	Bacillus_phage	3.3e-48	52.8
WP_033922885.1\|173034_173361_+	hypothetical protein	NA	NA	NA	NA
WP_052132362.1\|173357_173717_+	HNH endonuclease	A0A075M5R4	Enterococcus_phage	1.6e-14	45.7
WP_033922883.1\|173815_174343_+\|terminase	phage terminase small subunit P27 family	J7KC46	Streptococcus_phage	1.0e-30	46.7
WP_052132361.1\|174311_176063_+\|terminase	terminase large subunit	A0A2H4JCI4	uncultured_Caudovirales_phage	4.5e-155	50.7
WP_033922879.1\|176069_176270_+	hypothetical protein	NA	NA	NA	NA
WP_033922878.1\|176272_177508_+\|portal	phage portal protein	A0A2H4JAR2	uncultured_Caudovirales_phage	7.2e-83	42.1
WP_049955709.1\|177504_178071_+\|head,protease	HK97 family phage prohead protease	A0A1D6Z2A7	Staphylococcus_phage	2.7e-45	52.7
WP_052132360.1\|178135_179305_+\|capsid	phage major capsid protein	A0A060AI54	Enterococcus_phage	2.8e-44	37.7
WP_033922877.1\|179353_179692_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_031669990.1\|179661_179982_+\|head	phage head closure protein	NA	NA	NA	NA
179708:179722	attR	NA	NA	NA	NA
WP_033922874.1\|179975_180341_+	HK97 gp10 family phage protein	B4XYP9	Lactobacillus_phage	9.1e-10	37.4
WP_033922872.1\|180343_180742_+	hypothetical protein	NA	NA	NA	NA
WP_033922870.1\|180762_181338_+\|tail	phage major tail protein	M1PRQ7	Streptococcus_phage	3.5e-32	41.8
WP_012951331.1\|181427_181775_+	hypothetical protein	NA	NA	NA	NA
WP_033922868.1\|181971_186171_+\|tail	phage tail tape measure protein	J7KDT4	Streptococcus_phage	1.6e-12	33.0
WP_033922866.1\|186163_188407_+\|tail	phage tail family protein	A0A059T682	Listeria_phage	1.6e-56	29.4
WP_033922864.1\|188412_190704_+\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	3.7e-133	37.8
WP_033922862.1\|190696_191758_+	hypothetical protein	A0A059T7R4	Listeria_phage	3.6e-99	53.2
WP_014601069.1\|191795_192161_+	hypothetical protein	Q9T1A0	Listeria_phage	3.7e-11	97.9
WP_033922860.1\|192173_192458_+\|holin	holin	R4IDW2	Listeria_phage	7.0e-42	94.6
WP_033922858.1\|192454_193294_+	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	5.5e-135	88.0
WP_033922856.1\|193409_194147_-	hypothetical protein	NA	NA	NA	NA
WP_033922854.1\|194217_194403_-	hypothetical protein	R4IBK5	Listeria_phage	6.0e-18	83.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_MAKW01000018

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

17 : 9255

Listeria_phage(100.0%)

integrase

attL 6585:6597|attR 10709:10721

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003731704.1\|17_347_-	hypothetical protein	A8ATE1	Listeria_phage	1.1e-57	100.0
WP_031645562.1\|347_557_-	hypothetical protein	A0A059T6C7	Listeria_phage	6.6e-13	59.1
WP_031645561.1\|553_769_-	hypothetical protein	NA	NA	NA	NA
WP_060577994.1\|872_1316_-	pentapeptide repeat-containing protein	A0A060AFJ6	Listeria_phage	6.9e-44	89.7
WP_031645558.1\|1374_1554_-	hypothetical protein	A0A059T5G0	Listeria_phage	1.7e-22	89.8
WP_031645557.1\|1550_1994_-	hypothetical protein	NA	NA	NA	NA
WP_031645556.1\|1996_2191_-	hypothetical protein	A0A0B5CU49	Listeria_phage	2.4e-25	93.5
WP_031645555.1\|2193_2793_-	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	1.7e-58	60.5
WP_031645554.1\|2789_2999_-	hypothetical protein	A8ASN7	Listeria_phage	5.7e-25	89.9
WP_078311949.1\|2995_3280_-	hypothetical protein	A8ASN6	Listeria_phage	5.7e-44	91.5
WP_009931092.1\|3295_3463_-	hypothetical protein	A8ASN5	Listeria_phage	8.9e-21	92.7
WP_031659545.1\|3473_3656_-	hypothetical protein	NA	NA	NA	NA
WP_009931094.1\|3673_3964_-	hypothetical protein	A0A059T7V3	Listeria_phage	1.8e-40	89.4
WP_009931096.1\|4100_4253_-	hypothetical protein	A0A059T7S2	Listeria_phage	3.4e-19	98.0
WP_009931097.1\|4675_4918_-	hypothetical protein	A8ATD2	Listeria_phage	5.4e-43	98.8
WP_009929536.1\|4919_5123_-	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	3.1e-28	100.0
WP_009931099.1\|5137_5461_-	hypothetical protein	NA	NA	NA	NA
WP_012951519.1\|6265_6589_+	helix-turn-helix transcriptional regulator	R4IDX0	Listeria_phage	6.3e-39	75.7
6585:6597	attL	NA	NA	NA	NA
WP_078311951.1\|6605_7058_+	ImmA/IrrE family metallo-endopeptidase	R4IBK9	Listeria_phage	2.6e-75	86.7
WP_014930257.1\|7109_7973_+	hypothetical protein	NA	NA	NA	NA
WP_012951516.1\|8100_9255_+\|integrase	site-specific integrase	A0A059T688	Listeria_phage	1.6e-209	95.8
10709:10721	attR	NA	NA	NA	NA

DBSCAN-SWA_2

121308 : 128731

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020246560.1\|121308_122865_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.3e-17	28.1
WP_003732712.1\|122993_123398_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_003732711.1\|123458_123767_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003727000.1\|123779_124604_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	9.7e-68	52.6
WP_003721509.1\|124615_126106_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_020246559.1\|126314_127328_-	glycosyltransferase	A0A1V0SAH6	Catovirus	7.9e-11	32.0
WP_003732709.1\|127342_128326_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.1e-12	34.6
WP_003721506.1\|128347_128731_-	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_MAKW01000007

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

105 : 17274

uncultured_Caudovirales_phage(28.57%)

integrase

attL 4819:4833|attR 17987:18001

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031669537.1\|105_501_-	DUF2513 domain-containing protein	A0A1Q1PVT8	Staphylococcus_phage	4.7e-20	44.3
WP_054314992.1\|659_1082_+	hypothetical protein	NA	NA	NA	NA
WP_054314991.1\|1083_2427_+	AAA family ATPase	A0A2H4IZL9	uncultured_Caudovirales_phage	2.0e-94	44.1
WP_054314990.1\|2761_3658_+	toprim domain-containing protein	A0A142F1Q1	Bacillus_phage	3.3e-53	39.9
WP_039120258.1\|3718_4246_+	hypothetical protein	NA	NA	NA	NA
WP_050018546.1\|4377_5130_+	hypothetical protein	A0A2H4IZK6	uncultured_Caudovirales_phage	4.3e-30	37.6
4819:4833	attL	NA	NA	NA	NA
WP_031669546.1\|5130_5517_+	hypothetical protein	A0A0N9RZF9	Paenibacillus_phage	4.2e-21	46.7
WP_031669547.1\|5513_5849_+	hypothetical protein	NA	NA	NA	NA
WP_078311886.1\|5860_7990_+	hypothetical protein	A0A2H4J6W7	uncultured_Caudovirales_phage	8.5e-116	38.6
WP_054314988.1\|7990_8347_+	hypothetical protein	NA	NA	NA	NA
WP_054314987.1\|8343_8595_+	hypothetical protein	NA	NA	NA	NA
WP_157009365.1\|8591_8756_+	hypothetical protein	NA	NA	NA	NA
WP_061106278.1\|8950_9766_+	hypothetical protein	A0A0N9SHN6	Paenibacillus_phage	9.0e-66	50.2
WP_039120267.1\|9752_10121_+	hypothetical protein	NA	NA	NA	NA
WP_031669552.1\|10113_10614_+	crossover junction endodeoxyribonuclease RuvC	A0A0N9ST03	Paenibacillus_phage	5.8e-07	45.3
WP_031669553.1\|10613_10823_+	hypothetical protein	NA	NA	NA	NA
WP_031669554.1\|10824_11109_+	thioredoxin family protein	NA	NA	NA	NA
WP_054314985.1\|11221_11719_+	hypothetical protein	NA	NA	NA	NA
WP_141021573.1\|11728_12115_+	hypothetical protein	A0A249XZP2	Enterococcus_phage	4.9e-22	43.5
WP_054314984.1\|12288_12822_+	DUF3310 domain-containing protein	A8ATF5	Listeria_phage	2.9e-73	74.9
WP_167630737.1\|12822_12978_+	hypothetical protein	NA	NA	NA	NA
WP_031669558.1\|12977_13289_+	hypothetical protein	NA	NA	NA	NA
WP_054314983.1\|13267_13585_+	hypothetical protein	NA	NA	NA	NA
WP_077944794.1\|13634_14270_-	helix-turn-helix transcriptional regulator	A0A2H4JGT9	uncultured_Caudovirales_phage	7.6e-20	35.5
WP_078311888.1\|14417_15173_+	phage antirepressor KilAC domain-containing protein	A0A0C5AFE7	Paenibacillus_phage	2.0e-59	49.6
WP_054314980.1\|15961_16210_-	hypothetical protein	A0A059T6G3	Listeria_phage	9.8e-08	39.0
WP_061106273.1\|16329_17274_-\|integrase	tyrosine-type recombinase/integrase	A0A0A8WF93	Clostridium_phage	4.6e-05	26.7
17987:18001	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_MAKW01000026

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3255 : 13495

Streptococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728469.1\|3255_6171_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.9e-174	36.7
WP_003728468.1\|6174_6729_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	7.0e-38	53.4
WP_003728467.1\|7008_7368_+	Cd(II)-sensing metalloregulatory transcriptional repressor CadC	E4ZFI8	Streptococcus_phage	3.1e-26	50.0
WP_003728466.1\|7367_9503_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.6e-247	64.5
WP_096807934.1\|10150_10555_+	hypothetical protein	NA	NA	NA	NA
WP_025370685.1\|10734_11334_+	recombinase family protein	A0A1W5LU24	Ralstonia_phage	1.1e-20	41.5
WP_025370684.1\|11487_11778_+	hypothetical protein	NA	NA	NA	NA
WP_025370683.1\|11810_12155_+	hypothetical protein	NA	NA	NA	NA
WP_099770710.1\|12142_13495_+	Y-family DNA polymerase	O64031	Bacillus_phage	1.0e-90	45.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_MAKW01000017

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

174430 : 235685

Streptococcus_phage(15.79%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003732816.1\|174430_176137_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_003723454.1\|176176_177439_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_003723453.1\|177452_178595_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_061106125.1\|178609_179398_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_003732812.1\|179411_180170_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	4.4e-22	42.1
WP_003723450.1\|180399_180957_-	ribosome recycling factor	NA	NA	NA	NA
WP_003723449.1\|180956_181685_-	UMP kinase	NA	NA	NA	NA
WP_003723448.1\|181977_182352_+	hypothetical protein	NA	NA	NA	NA
WP_010989732.1\|182329_183535_+	helicase SNF2	L0P6E9	Lactobacillus_phage	4.9e-92	47.1
WP_003723446.1\|183524_184829_+	DUF3440 domain-containing protein	A0A220GKF8	Streptococcus_phage	9.5e-134	52.1
WP_003723445.1\|184838_185345_+	ParB-like nuclease domain-containing protein	A0A220GKT8	Streptococcus_phage	4.0e-56	66.7
WP_003723444.1\|185366_186098_+	methyltransferase domain-containing protein	A0A1X9I6N4	Streptococcus_phage	1.2e-80	59.1
WP_003732810.1\|186116_186959_+	DUF2785 domain-containing protein	NA	NA	NA	NA
WP_003723442.1\|187009_187249_-	YneF family protein	NA	NA	NA	NA
WP_003732809.1\|187469_189464_-	transketolase	NA	NA	NA	NA
WP_003723440.1\|189610_189838_-	DUF896 domain-containing protein	NA	NA	NA	NA
WP_003723439.1\|189929_190259_-	cell division suppressor protein YneA	NA	NA	NA	NA
WP_003723438.1\|190415_191030_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	9.3e-15	62.1
WP_003723437.1\|191060_191582_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003723436.1\|191625_192921_-	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	1.8e-145	61.6
WP_003723435.1\|193064_194399_-	type I glutamate--ammonia ligase	M1NM71	Moumouvirus	4.2e-12	23.8
WP_003719570.1\|194469_194838_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003723434.1\|195041_196268_-	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_072219379.1\|196260_197484_-	GTPase HflX	NA	NA	NA	NA
WP_003719566.1\|197594_197828_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_003732806.1\|197950_198868_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003723738.1\|198993_200670_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_003723737.1\|200902_201601_-	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	1.3e-12	32.4
WP_003723736.1\|201813_203682_+	peptidoglycan O-acetyltransferase OatA	B5WZU0	Pseudomonas_phage	6.5e-43	31.9
WP_078311937.1\|203715_205518_-	class 1 internalin InlK	NA	NA	NA	NA
WP_031667889.1\|205849_207643_-	lmo1289 family class 1 internalin	NA	NA	NA	NA
WP_003723733.1\|207972_208440_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_003723732.1\|208522_210982_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	1.1e-101	31.6
WP_078311940.1\|210978_212946_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	7.4e-122	42.3
WP_003732802.1\|213126_213534_-	CoA-binding protein	NA	NA	NA	NA
WP_003724132.1\|213691_214288_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003724131.1\|214329_215202_-	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003724130.1\|215204_215516_-	hypothetical protein	NA	NA	NA	NA
WP_003724129.1\|215537_215957_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003726695.1\|216059_216839_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_003732800.1\|216859_218269_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IBU3	Erwinia_phage	6.8e-29	25.6
WP_003724001.1\|218282_218822_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_003724000.1\|218842_219745_-	tyrosine recombinase XerC	A0A1B1IQT7	uncultured_Mediterranean_phage	8.0e-23	28.0
WP_003723999.1\|220027_221332_-\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_003732799.1\|221394_223473_-	type I DNA topoisomerase	A0A1V0SB35	Catovirus	3.2e-107	37.5
WP_020246590.1\|223743_224604_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	5.8e-39	43.2
WP_003723891.1\|224737_225523_-	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	3.0e-26	39.2
WP_003723890.1\|225519_226383_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003723889.1\|226392_226935_-	type I signal peptidase SipZ	NA	NA	NA	NA
WP_009924619.1\|227036_227606_-	type I signal peptidase SipY	NA	NA	NA	NA
WP_003723887.1\|227640_228207_-	type I signal peptidase SipX	NA	NA	NA	NA
WP_003723886.1\|228325_229585_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_078311945.1\|229770_231054_-	trigger factor	NA	NA	NA	NA
WP_003732796.1\|231168_232107_-	hypothetical protein	NA	NA	NA	NA
WP_003732795.1\|232368_233034_-	hypothetical protein	NA	NA	NA	NA
WP_003732794.1\|233051_233585_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003727524.1\|233703_233919_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003723563.1\|234069_234465_+	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003723562.1\|234545_235685_+\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

8. NZ_MAKW01000023

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_MAKW01000023_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_MAKW01000023_1

26938-27089

Unclear

Consensus_repeat	Method
GAGCTCGGTTCCGATGTAGCAGGAGCATTAAAACCAAGAAGCATTGG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_MAKW01000023_1

>merge|NZ_MAKW01000023|1|26938-27089|CRISPRCasFinder
GAGCTCGGTTCCGATGTAGCAGGAGCATTAAAACCAAGAAGCATTGGCGTCTCTGGCAAAGCAAGTCTTAACTCTTCATCCGTAGGTGGTGGTGGAAATTCGAATGAGCTCGGTTCTGATGTAGCAGGAGCATTAAAACCAAGAAGCATTGG

>NZ_MAKW01000023|1|1|26938-27089|CRISPRCasFinder
GAGCTCGGTTCCGATGTAGCAGGAGCATTAAAACCAAGAAGCATTGG	CGTCTCTGGCAAAGCAAGTCTTAACTCTTCATCCGTAGGTGGTGGTGGAAATTCGAAT
GAGCTCGGTTCTGATGTAGCAGGAGCATTAAAACCAAGAAGCATTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_MAKW01000023.1\|WP_003722736.1\|24116_24578_-\|YehR-family-lipoprotein	unknown	unknown	gnl\|CDD\|227145
NZ_MAKW01000023.1\|WP_003722727.1\|34811_36185_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184643
NZ_MAKW01000023.1\|WP_003733151.1\|19716_20277_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_MAKW01000023.1\|WP_003733146.1\|25107_25977_-\|phosphatidylcholine-phospholipase-C	unknown	unknown	gnl\|CDD\|214813
NZ_MAKW01000023.1\|WP_003722740.1\|21057_21681_-\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	unknown	unknown	gnl\|CDD\|235534
NZ_MAKW01000023.1\|WP_003722731.1\|29993_31583_-\|cholesterol-dependent-cytolysin-listeriolysin-O	unknown	unknown	gnl\|CDD\|366559
NZ_MAKW01000023.1\|WP_003722729.1\|33048_33762_+\|listeriolysin-O-transcriptional-regulator-PrfA	unknown	unknown	gnl\|CDD\|223736
NZ_MAKW01000023.1\|WP_003722735.1\|24712_25036_-\|DUF5502-family-protein	unknown	unknown	gnl\|CDD\|340321
NZ_MAKW01000023.1\|WP_003722723.1\|39197_39890_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_MAKW01000023.1\|WP_003725735.1\|23733_24066_+\|putative-heavy-metal-binding-protein	unknown	unknown	gnl\|CDD\|179228
NZ_MAKW01000023.1\|WP_003733150.1\|20383_20968_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_MAKW01000023.1\|WP_003722724.1\|37992_39201_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528
NZ_MAKW01000023.1\|WP_009930499.1\|22992_23667_+\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|378033
NZ_MAKW01000023.1\|WP_003722732.1\|28130_29663_-\|zinc-metalloproteinase-Mpl	unknown	unknown	gnl\|CDD\|225768
NZ_MAKW01000023.1\|WP_003722739.1\|21974_22916_+\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
NZ_MAKW01000023.1\|WP_003733152.1\|16062_19602_-\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NZ_MAKW01000023.1\|WP_003722728.1\|33804_34761_-\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_MAKW01000023.1\|WP_003722726.1\|36571_36880_-\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NZ_MAKW01000023.1\|WP_003722725.1\|36999_37308_-\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NZ_MAKW01000023.1\|WP_003733144.1\|31824_32778_+\|phosphatidylinositol-specific-phospholipase-C	unknown	unknown	gnl\|CDD\|176497

Protein	Function_ID	Function_description	E-value
NZ_MAKW01000023.1\|WP_003722736.1\|24116_24578_-\|YehR-family-lipoprotein	gnl\|CDD\|227145	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown].	5.22035e-59
NZ_MAKW01000023.1\|WP_003722727.1\|34811_36185_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184643	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NZ_MAKW01000023.1\|WP_003733151.1\|19716_20277_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	1.69718e-108
NZ_MAKW01000023.1\|WP_003733146.1\|25107_25977_-\|phosphatidylcholine-phospholipase-C	gnl\|CDD\|214813	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.	1.12447e-86
NZ_MAKW01000023.1\|WP_003722740.1\|21057_21681_-\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	2.38585e-63
NZ_MAKW01000023.1\|WP_003722731.1\|29993_31583_-\|cholesterol-dependent-cytolysin-listeriolysin-O	gnl\|CDD\|366559	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin.	1.50399e-178
NZ_MAKW01000023.1\|WP_003722729.1\|33048_33762_+\|listeriolysin-O-transcriptional-regulator-PrfA	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	9.59942e-12
NZ_MAKW01000023.1\|WP_003722735.1\|24712_25036_-\|DUF5502-family-protein	gnl\|CDD\|340321	pfam17606, DUF5502, Family of unknown function (DUF5502). This is a family of unknown function found in Listeria.	5.76244e-49
NZ_MAKW01000023.1\|WP_003722723.1\|39197_39890_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	7.27113e-121
NZ_MAKW01000023.1\|WP_003725735.1\|23733_24066_+\|putative-heavy-metal-binding-protein	gnl\|CDD\|179228	PRK01119, PRK01119, putative heavy metal-binding protein.	8.98192e-61
NZ_MAKW01000023.1\|WP_003733150.1\|20383_20968_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.15404e-10
NZ_MAKW01000023.1\|WP_003722724.1\|37992_39201_-\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	4.34799e-62
NZ_MAKW01000023.1\|WP_009930499.1\|22992_23667_+\|DNA-alkylation-repair-protein	gnl\|CDD\|378033	pfam08713, DNA_alkylation, DNA alkylation repair enzyme. Proteins in this family are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein in this family shows it to adopt a supercoiled alpha helical structure.	1.81561e-21
NZ_MAKW01000023.1\|WP_003722732.1\|28130_29663_-\|zinc-metalloproteinase-Mpl	gnl\|CDD\|225768	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism].	3.90486e-139
NZ_MAKW01000023.1\|WP_003722739.1\|21974_22916_+\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	0
NZ_MAKW01000023.1\|WP_003733152.1\|16062_19602_-\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_MAKW01000023.1\|WP_003722728.1\|33804_34761_-\|ribose-phosphate-diphosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_MAKW01000023.1\|WP_003722726.1\|36571_36880_-\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	5.03804e-54
NZ_MAKW01000023.1\|WP_003722725.1\|36999_37308_-\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	2.92652e-53
NZ_MAKW01000023.1\|WP_003733144.1\|31824_32778_+\|phosphatidylinositol-specific-phospholipase-C	gnl\|CDD\|176497	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated PI-analogues, PIP2 and PIP, to generate two important second messengers, InsP3 and DAG. InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. In contrast, bacterial PI-PLCs contain a single catalytic domain. Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. They participate in Ca2+-independent PI metabolism. They are characterized as phosphatidylinositol-specific phospholipase C (EC 4.6.1.13) that selectively hydrolyze PI, not PIP or PIP2. The TIM-barrel type catalytic domain in bacterial PI-PLCs is very similar to the one in eukaryotic PI-PLCs, in which the catalytic domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. The catalytic mechanism of both prokaryotic and eukaryotic PI-PLCs is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This superfamily also includes a distinctly different type of eukaryotic PLC, glycosylphosphatidylinositol-specific phospholipase C (GPI-PLC), an integral membrane protein characterized in the protozoan parasite Trypanosoma brucei. T. brucei GPI-PLC hydrolyzes the GPI-anchor on the variant specific glycoprotein (VSG), releasing dimyristyl glycerol (DMG), which may facilitate the evasion of the protozoan to the host#s immune system. It does not require Ca2+ for its activity and is more closely related to bacterial PI-PLCs, but not mammalian PI-PLCs.	8.10719e-115

>NZ_MAKW01000023.1|WP_003733146.1|25107_25977_-|phosphatidylcholine-phospholipase-C
MKFKKVVLGMCLTASVLVFPITIKANACCDEYLQTPAAPHDIDSKLPHKLSWSADNPTNTDVNTHYWLFKQAEKILAKDVNHMRANLMNELKKFDKQIAQGIYDADHKNPYYDTSTFLSHFYNPDRDNTYLPGFANAKITGAKYFNQSVTDYREGKFDTAFYKLGLAIHYYTDISQPMHANNFTAISYPPGYHCAYENYVDTIKHNYQATEDMVAKRFCSDDVKDWLYENAKRAKADYPKIVNAKTKKSYLVGNSEWKKDTVEPTGARLRDSQQTLAGFLEFWSKKTNE
>NZ_MAKW01000023.1|WP_003722735.1|24712_25036_-|DUF5502-family-protein
MYIKGRLIFFFVMFVIALCSVLILLIIKISVWKDEPFHLSDAKEIECLGSCEIKNTNQKIHFFSIKENLFEEKGDIAGILNEDEQKVADKSIFIVILDDEKGIANEE
>NZ_MAKW01000023.1|WP_003722736.1|24116_24578_-|YehR-family-lipoprotein
MKMLKKGTAVLFVMIMAVMLVACGDKEETKTYTLSQNGVDSKLTYTYKGDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKAIETLEVDYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQGYKEVSK
>NZ_MAKW01000023.1|WP_003725735.1|23733_24066_+|putative-heavy-metal-binding-protein
MIVTTSPNIEGKQIIEYKKIVFGEVITGVNFMKDIGAGLRNFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDYEVLGADNGMLMVTASGTAVVIEAQDY
>NZ_MAKW01000023.1|WP_009930499.1|22992_23667_+|DNA-alkylation-repair-protein
MITFDQLDTELQALENPNTIKIFRNHGCPDSLDLYGLKIGDLKKIIRREKLTKNHELAVKLIESNNSDLIYLGLLAINPNKITTEQIEKWNIAFRETWSQLTFGLASIVSKRDDALLFAKTWIESDYDLTKSMGWQIYSEHINNLPEAETLLQRAKETLQTETNRTRYSMNGFIITCGIYKDDLHEKAMEAAKSVGKVHVNLGNTACKVPDAISYIEKARNRTK
>NZ_MAKW01000023.1|WP_003722739.1|21974_22916_+|L-lactate-dehydrogenase
MKDHQKIILVGDGAVGSSYAFACVNLSIGQEFGIIDIDKDRTIGDAMDLSHAVPFSTPKKIYSANYSDCHDADLVVVTAGTAQKPGETRLDLVNRNIKIMKGIVDEVMASGFDGIFLIASNPVDILTYATWKFSGLPKERVIGSGTSLDTARFRMSIADYLKVDARNVHGYILGEHGDTEFPAWSHTTVGGLPITEWISEDEQGAMDTIFVSVRDAAYEIINKKGATFYGVAAALARITKAILNNENAILPLSVYLDGHYGMNDIYIGAPAVVNRQGVRHIVEMNLNDKEKEQMKNSADTLKKVLDDAMKQID
>NZ_MAKW01000023.1|WP_003722740.1|21057_21681_-|50S-ribosomal-protein-L25/general-stress-protein-Ctc
MATTLEVQKRETTQHSEVTRLRSEGKVPGIIYGYKSENVPVSVDSLELIKAVRDNGRNAVFSVTVDGKKLNVLLHEYQVDPLKDVLVHVDLLAVDMNEEVETDVRVVLVGDAPGVKAGGVLQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLPENKDYVVQAEEEETVVTVSAPRAEEEPTTTEAPEPEAVHGKDEEPVE
>NZ_MAKW01000023.1|WP_003733150.1|20383_20968_-|GNAT-family-N-acetyltransferase
MLDKSVPHISVIMVNHDATNYPEFHLPAGYSFCFYKDGLEEDWCRLQLETGQVLSMDSIRARFETEFGNEKEKLTKRCIFVKAPNGEIIGTAMLWDGNTFGKMESRIHWVAVLDSHGGKGIAKALLSKILGLNKSKFVYLTTQTGSYQAIYLYRKFGFEKYVGKTPENWKTVNFQEEKETAWQIIENKIAEHQA
>NZ_MAKW01000023.1|WP_003733151.1|19716_20277_-|aminoacyl-tRNA-hydrolase
MKLIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKSKFNGMTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNISIEDVVIVYDDLDLPVGKIRLRQKGSAGGHNGMKSIIQHVKTQEFNRIRVGVSRPLKGEVINYVLGDFPKAEQPDIIAAIQKSADAIEDFAQTPFIEVMNKYNQK
>NZ_MAKW01000023.1|WP_003733152.1|16062_19602_-|transcription-repair-coupling-factor
MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGIIDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIVKRLEKKMTHTLNELKENEDKQALVENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDYLPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLEGNHSPKIYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKIKKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGEDKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREFEEAFPYQETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVPVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGTQLKITINVQNKPLKEWLYQVKSLAEKLRGAMKEKASTEN
>NZ_MAKW01000023.1|WP_003722732.1|28130_29663_-|zinc-metalloproteinase-Mpl
MKSKLICIIMVIAFQAHFTMTVKADSVGEEKLQNNTQAKKTPADLKALPDSCEAKDFYKNFKILDMTKDKLGVTHYTLALSSGGYLTDNDEIKVHVTPDNKITFINGDLQQGQLRITNQIKITEKNAIEKAFEAIGQSEAHVKSYVGNPVKEKEIILNSRTKRLVYNIKLIFAEPEVASWIVQVDAETGAILKKQNMLSEVERADTHKDFQALGKGANRLLQRPLHVMKINDLFYLVDRTHKGLIRTFDLKHNTDTSFGKVVSNKTNMFTDPEFSSAVDAHFYASEVYEYYKNVHQLESLDGKGGEIDSFVHYGLNCNNAFWDGQEILYGDGDKKNFKPFSCAKTIVGHELTHAVIQYSAGLEYEGQSGALNESFADVFGYFIAPNHWLIGEDVCVRGSRDGRIRSIKDPDKYNQAAHMKDYESLPITEEGDWGGVHYNSGIPNKAAYNTITKLGKEKTEQLYFRALKYYLTKKSQFTDAKKALQQAAKDLYGEDASKKVAEAWEAVGVN
>NZ_MAKW01000023.1|WP_003722731.1|29993_31583_-|cholesterol-dependent-cytolysin-listeriolysin-O
MKKIMLVFITLILVSLPIAQQTEAKDASAFNKENSISSMAPPASPPASPKTPIEKKHADEIDKYIQGLDYNKNNVLVYHGDAVTNVPPRKGYKDGNEYIVVEKKKKSINQNNADIQVVNAISSLTYPGALVKANSELVENQPDVLPVKRDSLTLSIDLPGMTNQDNKIVVKNATKSNVNNAVNTLVERWNEKYAQAYPNVSAKIDYDDEMAYSESQLIAKFGTAFKAVNNSLNVNFGAISEGKMQEEVISFKQIYYNVNVNEPTRPSRFFGKAVTKEQLQALGVNAENPPAYISSVAYGRQVYLKLSTNSHSTKVKAAFDAAVSGKSVSGDVELTNIIKNSSFKAVIYGGSAKDEVQIIDGNLGDLRDILKKGATFNRETPGVPIAYTTNFLKDNELAVIKNNSEYIETTSKAYTDGKINIDHSGGYVAQFNISWDEVNYDPEGNEIVQHKNWSENNKSKLAHFTSSIYLPGNARNINVYAKECTGLAWEWWRTVIDDRNLPLVKNRNISIWGTTLYPKYSNKVDNPIE
>NZ_MAKW01000023.1|WP_003733144.1|31824_32778_+|phosphatidylinositol-specific-phospholipase-C
MYKNYLQRTLVLLLCFILYFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQTQTMSLYQQLEAGIRYIDIRAKDNLNIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSRKFGMQFGAPNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN
>NZ_MAKW01000023.1|WP_003722729.1|33048_33762_+|listeriolysin-O-transcriptional-regulator-PrfA
MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
>NZ_MAKW01000023.1|WP_003722728.1|33804_34761_-|ribose-phosphate-diphosphokinase
MSNEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNPVNQNLMELLIMIDALKRASAATINIVMPYYGYARQDRKARSREPITAKLVANLIETAGATRMITLDMHAPQIQGFFDIPIDHLNAVRLLSDYFSERHLGDDLVVVSPDHGGVTRARKMADRLKAPIAIIDKRRPRPNVAEVMNIVGNVEGKVCIIIDDIIDTAGTITLAAKALREAGATKVYACCSHPVLSGPAMKRIEESPIEKLVVTNSIALPEEKWIDKMEQLSVAALLGEAIVRVHENASVSSLFE
>NZ_MAKW01000023.1|WP_003722727.1|34811_36185_-|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MSKRYAVVLAAGQGTRMKSKLYKVLHPVCGKPMVEHVVDQISTLNVDKVVTIVGHGAEKVQEHLAGKSEFVKQDEQLGTAHAVLQAKAELAGKDGVTLVVCGDTPLIEASTMEALLKYHHEKRAKATILTTVIEDPTGYGRIIRDDLGIVEKIVEHKDATEKEQRISEINTGTYCFDNKALFEALENVSNDNVQGEYYLPDVIKILKDSDEVVAAYRMESFEESLGVNDRIALAEASKLMQRRINENHMRNGVTLVNPESTYIDIDVKIGQDTVIEPGVMLRGKTVIGDDCVVTSGSEIVNSVIGERVHVRTSSIFESKVGDDVQIGPYAHLRPESDIHDHVKIGNYVETKKAVVGEGTKLPHFIYMGDAEIGKNVNVGCGSIAVNYDGKNKAKTIIGDNVFVGCNSNLIAPVKVGDRAFIAAGSTITKDVPEDALGIARAKQDNKLGYAKHLNHGK
>NZ_MAKW01000023.1|WP_003722726.1|36571_36880_-|septation-regulator-SpoVG
MQVTDVRLRRVETDGRMRAIASITLDEEFVVHDIRVIDGNNGLFVAMPSKRGVDGEFRDIAHPINSDTRAKIQEVVLAEYERVGEEEATAVTEEESESVSAE
>NZ_MAKW01000023.1|WP_003722725.1|36999_37308_-|septation-regulator-SpoVG
MEITDVRLRRVETDGRMKAISSITIDGEFVIHDIRVIDGNEGLFVAMPSKRTPDGEFRDIAHPINSGTRAKIQEAVLAAYEVADEPAVNEESSADESIVEEN
>NZ_MAKW01000023.1|WP_003722724.1|37992_39201_-|ABC-transporter-permease
MNVLQSMKMAWKQLKASKLRSFLTMLGIIIGVASVILLVSLGNGVTQEVDDQMGDLGSNLITVVNSSVNPNDKYTYDEVMKYQNIDGVKSVSPELSGQVNATFDYKSSSNKVIGTNDQYKAARSLEMKEGRFLLPIDTEYGQKVAVIGSTVASDLFGFGDPIGETIRLNGMPYKVVGVLKEKGASMMGSSDDQIFIPISSAQRLLKDTNVRTIYVETKSAEDVDFVVNTLESRLAIKFGDEKEQEKNASSAQMGPSYQVINQQEILNAFNTISTTLTTALGAIAAISLVVGGIGIMNIMLVSVSERTREIGIRKALGAKKRAILLQFLIESIVISVCGGVIGIIIGVSGALIFGSVAGISSGITAGTIIFSFVFSLCIGVIFGIAPANKASKLRPIDALRSE
>NZ_MAKW01000023.1|WP_003722723.1|39197_39890_-|ABC-transporter-ATP-binding-protein
MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPSGSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNKLSEIRNKKIGFIFQQFNLLPKLSAFENVELPLIYAGLSVSAREKAAIECLEKVGLLEKRRNLPTQLSGGQQQRVAIARALAGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQDGKLFHEEATQA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

9. NZ_MAKW01000002

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

50378 : 60409

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722116.1\|50378_52532_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	4.0e-44	34.1
WP_003732117.1\|52555_54328_-	DNA helicase RecQ	A0A2K9L3P7	Tupanvirus	6.3e-80	37.1
WP_003722118.1\|54488_55955_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.0e-97	40.0
WP_003732118.1\|56241_56772_-	ADP-ribose-binding protein	A0A0K1L687	Scale_drop_disease_virus	5.2e-30	50.0
WP_003732119.1\|56829_58440_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.4e-46	29.7
WP_072215787.1\|58618_58927_+	hypothetical protein	NA	NA	NA	NA
WP_003725314.1\|58954_60409_+	glycoside hydrolase family 1 protein	A0A0B5JD41	Pandoravirus	1.9e-50	30.3

DBSCAN-SWA_2

276140 : 286868

Listeria_phage(40.0%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721739.1\|276140_276593_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|276598_276934_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_031668171.1\|277150_277579_+	hypothetical protein	A8ATZ8	Listeria_phage	3.0e-12	45.7
WP_003721742.1\|277590_278007_+	hypothetical protein	NA	NA	NA	NA
WP_020246384.1\|278285_278675_+	DUF5072 family protein	NA	NA	NA	NA
WP_003721744.1\|278687_279200_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003740132.1\|279247_279550_+	hypothetical protein	NA	NA	NA	NA
WP_020246385.1\|279591_279996_+	hypothetical protein	A0A097PAX1	Streptococcus_pyogenes_phage	8.2e-20	43.7
WP_003721747.1\|279982_281851_+	hypothetical protein	A0A097PAU2	Streptococcus_pyogenes_phage	1.7e-19	45.3
WP_003721748.1\|281847_282666_+\|tail	phage tail family protein	Q9T1A6	Listeria_phage	5.7e-44	35.5
WP_003721750.1\|282675_283812_+\|tail	phage tail protein	A0A0B5D0G3	Listeria_phage	2.9e-46	33.5
WP_003721751.1\|283801_284101_+	hypothetical protein	NA	NA	NA	NA
WP_003732224.1\|284115_284691_+	hypothetical protein	NA	NA	NA	NA
WP_003721753.1\|284705_285185_+	hypothetical protein	NA	NA	NA	NA
WP_003721754.1\|285181_285718_+	hypothetical protein	NA	NA	NA	NA
WP_003721755.1\|285736_286159_+\|holin	holin family protein	Q2I8E7	Bacillus_phage	1.1e-27	46.3
WP_003732227.1\|286139_286868_+	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGH1	Paenibacillus_phage	4.3e-35	42.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

10. NZ_MAKW01000028

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

61 : 3853

Listeria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014931683.1\|61_295_-	hypothetical protein	A0A059T6E1	Listeria_phage	5.2e-35	94.8
WP_003731277.1\|596_830_+	hypothetical protein	A8ATW9	Listeria_phage	4.3e-13	100.0
WP_003731276.1\|861_1113_+	hypothetical protein	A8ATW8	Listeria_phage	2.0e-40	100.0
WP_003722518.1\|1113_1563_+	anti-CRISPR protein AcrIIA1	A8ATW7	Listeria_phage	2.4e-76	100.0
WP_039381651.1\|1587_2085_+	AP2 domain-containing protein	A8ATW6	Listeria_phage	1.9e-90	99.4
WP_031645777.1\|2177_2717_-	GNAT family N-acetyltransferase	A0A0B5CYP1	Listeria_phage	1.5e-77	79.2
WP_031645776.1\|2716_2896_-	hypothetical protein	A0A0B5CU31	Listeria_phage	3.5e-23	96.6
WP_078311976.1\|3134_3853_-	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	6.2e-111	85.4

Anti-CRISPR protein detection

Acr_ID: NZ_MAKW01000028.1|WP_003731276.1|861_1113_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_MAKW01000028.1|WP_003731277.1|596_830_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_MAKW01000028.1|WP_003731276.1|861_1113_+|hypothetical-protein

861_1113_+

83 aa aa

AcrIIA12

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3641\|WP_003731276.1\|AcrIIA12\|II-A\|Verified\|Listeria-monocytogenes	1.0	1	1.0

61-3853

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_MAKW01000024_1	TypeII	1.6\|5568\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5568-5597	30	3607-3636	2

1. spacer 1.6|5568|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MAKW01000028 position: 3607-3636, mismatch: 2

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
tagcctttataattaaattgaaggtgcgga	Protospacer
**.****** ********************

NZ_MAKW01000028.1|WP_003731277.1|596_830_+|hypothetical-protein

596_830_+

77 aa aa

61-3853

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_MAKW01000024_1	TypeII	1.6\|5568\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5568-5597	30	3607-3636	2

1. spacer 1.6|5568|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MAKW01000028 position: 3607-3636, mismatch: 2

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
tagcctttataattaaattgaaggtgcgga	Protospacer
**.****** ********************

11. NZ_MAKW01000019

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1066 : 27806

Listeria_phage(96.0%)

protease,terminase,portal,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_070783862.1\|1066_3361_-\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	0.0e+00	94.9
WP_078311956.1\|3376_5026_-\|tail	phage tail family protein	A0A059T682	Listeria_phage	3.0e-312	96.9
WP_078311957.1\|5013_9939_-\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	91.7
WP_140915399.1\|9942_10137_-	hypothetical protein	A0A059T6F4	Listeria_phage	5.1e-20	98.0
WP_025370591.1\|10154_10487_-	hypothetical protein	A0A059T7R2	Listeria_phage	8.7e-52	97.3
WP_025370590.1\|10557_11145_-\|tail	phage tail protein	A0A059T7Y4	Listeria_phage	1.3e-106	99.0
WP_026749924.1\|11165_11549_-	hypothetical protein	A0A059T681	Listeria_phage	2.1e-65	96.9
WP_026747164.1\|11545_11947_-	hypothetical protein	A8ATA2	Listeria_phage	5.2e-67	97.0
WP_025370587.1\|11943_12309_-	hypothetical protein	A0A059T6F2	Listeria_phage	2.4e-63	99.2
WP_014930914.1\|12292_12592_-	hypothetical protein	A0A059T7R0	Listeria_phage	5.3e-48	100.0
WP_167620291.1\|12601_12772_-	hypothetical protein	A0A059T7Y2	Listeria_phage	2.4e-21	98.2
WP_014930913.1\|12778_13930_-\|capsid	phage major capsid protein	A0A059T678	Listeria_phage	6.3e-214	100.0
WP_026749923.1\|13956_14754_-\|protease	Clp protease ClpP	A0A059T5F2	Listeria_phage	6.2e-144	99.6
WP_039385833.1\|14750_15881_-\|portal	phage portal protein	A0A059T6F0	Listeria_phage	1.6e-214	99.5
WP_009917707.1\|15931_16321_+	DUF2513 domain-containing protein	A0A1Q1PVT8	Staphylococcus_phage	3.7e-17	39.8
WP_078311959.1\|16330_17974_-\|terminase	terminase large subunit	A0A059T7Q8	Listeria_phage	0.0e+00	99.5
WP_031668694.1\|17970_18327_-\|terminase	P27 family phage terminase small subunit	A0A059T7Y1	Listeria_phage	1.0e-45	96.0
WP_009917710.1\|18376_18691_-	HNH endonuclease	A8ATF8	Listeria_phage	1.7e-57	100.0
WP_078311960.1\|18932_19676_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_009917712.1\|19773_20199_-	DUF722 domain-containing protein	A0A059T6H4	Listeria_phage	8.0e-74	100.0
WP_003731655.1\|20211_20439_-	hypothetical protein	NA	NA	NA	NA
WP_009930672.1\|20500_20656_-	hypothetical protein	NA	NA	NA	NA
WP_025283122.1\|20656_21190_-	DUF3310 domain-containing protein	A8ATF5	Listeria_phage	1.3e-76	79.4
WP_014930129.1\|21605_23411_-	primase	A8ATS2	Listeria_phage	3.5e-126	40.2
WP_014930128.1\|23413_25102_-	hypothetical protein	A8ATS1	Listeria_phage	1.6e-125	43.6
WP_014930127.1\|25174_25810_-	hypothetical protein	NA	NA	NA	NA
WP_014930126.1\|25812_26583_-	DUF1351 domain-containing protein	NA	NA	NA	NA
WP_009933853.1\|26579_26813_-	hypothetical protein	NA	NA	NA	NA
WP_014930125.1\|26827_27439_-	hypothetical protein	B6D7K1	Listeria_phage	6.8e-50	49.5
WP_070230872.1\|27435_27636_-	hypothetical protein	A0A059T6A2	Listeria_phage	3.4e-11	56.5
WP_009933642.1\|27632_27806_-	hypothetical protein	A0A059T5G3	Listeria_phage	5.2e-24	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

12. NZ_MAKW01000015

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 34017

Listeria_phage(93.48%)

terminase,integrase,tail

attL 8982:8994|attR 34034:34046

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078311917.1\|0_2145_-\|tail	phage tail protein	A8ATW1	Listeria_phage	0.0e+00	98.6
WP_012951931.1\|2157_3726_-\|tail	phage tail family protein	A8ATW0	Listeria_phage	2.0e-303	99.2
WP_078311920.1\|3722_8513_-\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	84.1
WP_077397315.1\|8517_8829_-	hypothetical protein	A0A0B5D116	Listeria_phage	1.3e-41	96.7
WP_061662993.1\|8825_9257_-	hypothetical protein	A8ATV7	Listeria_phage	2.9e-71	96.5
8982:8994	attL	NA	NA	NA	NA
WP_060587039.1\|9307_9547_-	Ig-like domain-containing protein	A8ASK3	Listeria_phage	2.3e-30	89.9
WP_003723782.1\|9569_10001_-	Ig domain-containing protein	A0A0B5CYK8	Listeria_phage	8.1e-58	82.9
WP_078311922.1\|9972_10377_-	hypothetical protein	A8ATV5	Listeria_phage	1.0e-62	97.6
WP_061662989.1\|10373_10691_-	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	9.5e-48	91.4
WP_061662987.1\|10680_11046_-	hypothetical protein	A8ATV3	Listeria_phage	7.8e-62	95.0
WP_003723785.1\|11045_11399_-	hypothetical protein	A8ATV2	Listeria_phage	8.4e-61	99.1
WP_003723786.1\|11399_11555_-	hypothetical protein	A0A0B5CYK6	Listeria_phage	1.0e-18	98.0
WP_003723787.1\|11568_12441_-	hypothetical protein	A0A0B5CTX8	Listeria_phage	2.3e-152	93.8
WP_003723788.1\|12463_13018_-	hypothetical protein	A8ATU9	Listeria_phage	8.8e-89	98.9
WP_023548506.1\|13113_14157_-	hypothetical protein	A0A0B5D111	Listeria_phage	3.7e-197	97.7
WP_023548504.1\|14161_15718_-	hypothetical protein	A0A0B5D0A6	Listeria_phage	1.9e-298	98.3
WP_038409838.1\|15732_17052_-\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	1.7e-231	87.8
WP_031641733.1\|16990_17776_-	hypothetical protein	A0A0B5CTX0	Listeria_phage	8.0e-128	95.9
WP_012951944.1\|17815_18043_-	hypothetical protein	A8AU06	Listeria_phage	1.5e-34	100.0
WP_031670269.1\|18124_18757_-	hypothetical protein	A8AU05	Listeria_phage	4.0e-114	99.0
WP_038409832.1\|18914_19487_-	sigma-70 family RNA polymerase sigma factor	A0A0B5D145	Listeria_phage	2.8e-90	87.9
WP_003722548.1\|19574_19730_-	hypothetical protein	A0A0B5D186	Listeria_phage	3.3e-22	96.1
WP_031645285.1\|19748_20141_-	DUF2481 family protein	A8ASP8	Listeria_phage	8.0e-20	45.0
WP_038409830.1\|20144_20549_-	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	3.8e-57	84.3
WP_061108225.1\|20493_20676_-	hypothetical protein	A8ASP6	Listeria_phage	1.3e-17	77.8
WP_069280800.1\|20694_21174_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	1.8e-66	83.8
WP_003731707.1\|21170_21431_-	hypothetical protein	NA	NA	NA	NA
WP_003731706.1\|21430_21613_-	hypothetical protein	NA	NA	NA	NA
WP_039378868.1\|21716_22178_-	hypothetical protein	A0A0C5K8Z3	Enterococcus_phage	2.5e-12	34.2
WP_039388499.1\|22174_22558_-	hypothetical protein	A0A0B5CYR4	Listeria_phage	3.2e-37	60.1
WP_069280801.1\|22538_22751_-	hypothetical protein	NA	NA	NA	NA
WP_069280802.1\|22747_23146_-	hypothetical protein	NA	NA	NA	NA
WP_023559382.1\|23136_23661_-	hypothetical protein	A0A059T5F9	Listeria_phage	6.3e-97	96.6
WP_023559383.1\|23671_23878_-	hypothetical protein	NA	NA	NA	NA
WP_023559384.1\|23874_24126_-	hypothetical protein	Q8W5X5	Listeria_phage	4.3e-35	94.0
WP_078311924.1\|24122_25091_-	phage replisome organizer N-terminal domain-containing protein	A8ASN4	Listeria_phage	1.5e-155	89.2
WP_010989960.1\|25107_25806_-	ERF family protein	A0A059T676	Listeria_phage	1.1e-109	100.0
WP_078311926.1\|25811_26288_-	siphovirus Gp157 family protein	A0A059T5F1	Listeria_phage	7.6e-57	79.7
WP_003734953.1\|26284_26479_-	hypothetical protein	A0A059T6E8	Listeria_phage	1.6e-29	100.0
WP_039388673.1\|26781_26970_-	hypothetical protein	Q9T175	Listeria_phage	1.3e-20	77.4
WP_031644321.1\|27071_27278_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039388676.1\|27267_27798_-	hypothetical protein	A8ATY1	Listeria_phage	6.7e-78	87.9
WP_039388679.1\|27922_28702_-	phage antirepressor KilAC domain-containing protein	A8ASM6	Listeria_phage	3.7e-141	98.1
WP_039388682.1\|28756_29332_+	hypothetical protein	E3W8C3	Leuconostoc_phage	8.2e-05	27.2
WP_039388686.1\|29273_29603_-	hypothetical protein	A0A059T6E5	Listeria_phage	6.7e-20	93.0
WP_039388690.1\|29613_29835_-	hypothetical protein	A8ATX7	Listeria_phage	6.0e-33	93.2
WP_003719466.1\|29899_30103_+	hypothetical protein	A0A0B5D131	Listeria_phage	9.8e-30	100.0
WP_039153036.1\|30161_30374_-	helix-turn-helix domain-containing protein	A0A0B5D0D3	Listeria_phage	1.1e-31	97.1
WP_039153035.1\|30539_30962_+	helix-turn-helix domain-containing protein	A0A0B5CYL9	Listeria_phage	3.4e-69	97.1
WP_039153033.1\|30977_31403_+	ImmA/IrrE family metallo-endopeptidase	A0A0B5CTZ7	Listeria_phage	3.8e-76	99.3
WP_039153031.1\|31417_32023_+	hypothetical protein	NA	NA	NA	NA
WP_078311928.1\|32084_32792_+	hypothetical protein	A0A0B5CTT6	Listeria_phage	4.2e-120	97.4
WP_060595889.1\|32853_34017_+\|integrase	site-specific integrase	S5MNZ2	Brevibacillus_phage	2.4e-51	31.7
34034:34046	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

13. NZ_MAKW01000024

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_MAKW01000024_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_MAKW01000024_1

5201-6161

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR

14 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_MAKW01000024_1

>merge|NZ_MAKW01000024|1|5201-6161|CRISPRCasFinder,CRT,PILER-CR
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAACTTCGTCCAATGTACCTCGCCTTTTTTGTCTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACCGAAGTAGGTTAGGGTATCGCCGATTTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCGACACATCGAGTCGTCCGGTTTTACTTACGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGAAAATCCGCAATCAATCCAAGCAGAAATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCGAATGTGTAAGCTTCTGAGTAACCTAGCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTAACCTTTAAAATTAAATTGAAGGTGCGGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAACAATTGACCGGGAATTCATCAATAATTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCATATATTATGAATATCGAGATAGTGTTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTTTTCTATTTTGGTGACTTTAGTACTTTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACATGGGAATGCCATAGTTATTACCAATATTGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTATTCGATCTATCGGACGTGTCGACATTATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTATTGACTCGGAAATGAAAACAAAAGGTCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTACATCGCTACCAATCAATCCGCTATTAAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACATCTATATTATCATACGTCAAGGAAGGGTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_MAKW01000024|1|1|5201-6161|CRISPRCasFinder
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAAC	TTCGTCCAATGTACCTCGCCTTTTTTGTCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACCGAAGTAGGTTAGGGTATCGCCGATTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGACACATCGAGTCGTCCGGTTTTACTTAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGAAAATCCGCAATCAATCCAAGCAGAAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGAATGTGTAAGCTTCTGAGTAACCTAGCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAACCTTTAAAATTAAATTGAAGGTGCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACAATTGACCGGGAATTCATCAATAATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATATATTATGAATATCGAGATAGTGTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTTTCTATTTTGGTGACTTTAGTACTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATGGGAATGCCATAGTTATTACCAATATTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATTCGATCTATCGGACGTGTCGACATTAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATTGACTCGGAAATGAAAACAAAAGGTCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACATCGCTACCAATCAATCCGCTATTAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATCTATATTATCATACGTCAAGGAAGGGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_MAKW01000024|1|1|5201-6161|CRT
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAAC	TTCGTCCAATGTACCTCGCCTTTTTTGTCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACCGAAGTAGGTTAGGGTATCGCCGATTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGACACATCGAGTCGTCCGGTTTTACTTAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGAAAATCCGCAATCAATCCAAGCAGAAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGAATGTGTAAGCTTCTGAGTAACCTAGCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAACCTTTAAAATTAAATTGAAGGTGCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACAATTGACCGGGAATTCATCAATAATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATATATTATGAATATCGAGATAGTGTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTTTCTATTTTGGTGACTTTAGTACTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATGGGAATGCCATAGTTATTACCAATATTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATTCGATCTATCGGACGTGTCGACATTAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATTGACTCGGAAATGAAAACAAAAGGTCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACATCGCTACCAATCAATCCGCTATTAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATCTATATTATCATACGTCAAGGAAGGGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_MAKW01000024|1|1|5267-6161|PILER-CR
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACCGAAGTAGGTTAGGGTATCGCCGATTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGACACATCGAGTCGTCCGGTTTTACTTAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGAAAATCCGCAATCAATCCAAGCAGAAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGAATGTGTAAGCTTCTGAGTAACCTAGCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAACCTTTAAAATTAAATTGAAGGTGCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACAATTGACCGGGAATTCATCAATAATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATATATTATGAATATCGAGATAGTGTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTTTCTATTTTGGTGACTTTAGTACTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATGGGAATGCCATAGTTATTACCAATATTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATTCGATCTATCGGACGTGTCGACATTAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATTGACTCGGAAATGAAAACAAAAGGTCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACATCGCTACCAATCAATCCGCTATTAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATCTATATTATCATACGTCAAGGAAGGGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_MAKW01000024.1\|WP_003733027.1\|6941_7283_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_MAKW01000024.1\|WP_031668146.1\|7279_8146_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_MAKW01000024.1\|WP_003733022.1\|29_1058_-\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_MAKW01000024.1\|WP_003733023.1\|1326_2853_+\|GW-domain-containing-glycosaminoglycan-binding-protein	unknown	unknown	gnl\|CDD\|224619
NZ_MAKW01000024.1\|WP_003733031.1\|13173_14559_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368093
NZ_MAKW01000024.1\|WP_003727703.1\|15264_15702_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_MAKW01000024.1\|WP_031668145.1\|2894_3746_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381359
NZ_MAKW01000024.1\|WP_003723652.1\|14850_15243_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_MAKW01000024.1\|WP_003733029.1\|8146_12151_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_MAKW01000024.1\|WP_003733026.1\|6289_6952_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_MAKW01000024.1\|WP_003733032.1\|15896_16643_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_MAKW01000024.1\|WP_003733030.1\|12675_13164_-\|hypothetical-protein	unknown	unknown	unknown
NZ_MAKW01000024.1\|WP_003723646.1\|4312_4675_-\|hypothetical-protein	unknown	unknown	unknown
NZ_MAKW01000024.1\|WP_003733033.1\|16648_17446_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_MAKW01000024.1\|WP_003733025.1\|3767_4190_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384

Protein	Function_ID	Function_description	E-value
NZ_MAKW01000024.1\|WP_003733027.1\|6941_7283_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.15214e-45
NZ_MAKW01000024.1\|WP_031668146.1\|7279_8146_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.76701e-129
NZ_MAKW01000024.1\|WP_003733022.1\|29_1058_-\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	3.84035e-115
NZ_MAKW01000024.1\|WP_003733023.1\|1326_2853_+\|GW-domain-containing-glycosaminoglycan-binding-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	3.41835e-69
NZ_MAKW01000024.1\|WP_003733031.1\|13173_14559_-\|hypothetical-protein	gnl\|CDD\|368093	pfam04740, LXG, LXG domain of WXG superfamily. This domain is present is the N-terminal region of a group of polymorphic toxin proteins in bacteria. It is predicted to use Type VII secretion pathway to mediate export of bacterial toxins.	5.37469e-18
NZ_MAKW01000024.1\|WP_003727703.1\|15264_15702_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.08607e-102
NZ_MAKW01000024.1\|WP_031668145.1\|2894_3746_-\|aldo/keto-reductase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	1.99645e-170
NZ_MAKW01000024.1\|WP_003723652.1\|14850_15243_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	4.44953e-85
NZ_MAKW01000024.1\|WP_003733029.1\|8146_12151_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_MAKW01000024.1\|WP_003733026.1\|6289_6952_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.59906e-114
NZ_MAKW01000024.1\|WP_003733032.1\|15896_16643_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	2.82266e-128
NZ_MAKW01000024.1\|WP_003733033.1\|16648_17446_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	5.34175e-53
NZ_MAKW01000024.1\|WP_003733025.1\|3767_4190_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	6.8812e-42

>NZ_MAKW01000024.1|WP_003723646.1|4312_4675_-|hypothetical-protein
MKKTSIIFIFCALLLTACSTTTKEIPRQTTEATGTIEQVETESILIKNFKIKNDNNTPELSVRFHISEKYHDETGNKIKRTELNKNDNIKIILTKDFQIQETSPAQIDPKYVQKIILLNK
>NZ_MAKW01000024.1|WP_003733025.1|3767_4190_-|MerR-family-transcriptional-regulator
MNIKQAADLFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDLNWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKKVRELLVYKIDSYDSHIAQFKAGELNADNVEKLWERDKF
>NZ_MAKW01000024.1|WP_031668145.1|2894_3746_-|aldo/keto-reductase
MKTVKLNNGVEVPILGFGTYQITDVAEAEQAVKDAIKAGYRHIDTAQSYMNEEAVGRGIAASGVDRKELFITTKIWVENVSYKGVMSSFDRSLKRLGLDYVDLLLIHQPFNDVYGAWIAMEELQASGKIRAIGVSNFSPDRVIDLAAFNEVTPQVNQIEVNPFQQQAANLAVLRKEGVAIEAWAPFAEGKNDVFNNPVLTKIGAKYGKSAAQVILRWLVEQDIIVLAKSVKPERMAQNLAIFDFELTEADKEEIAGLDQGESQFFSHADPEMVKWMASRKLNV
>NZ_MAKW01000024.1|WP_003733023.1|1326_2853_+|GW-domain-containing-glycosaminoglycan-binding-protein
MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTAQVNLTTSQQAFIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSNNLFGIKGTYKGKSVSMGTMEASGSTTANFRVYPSWKESIEDHTALITENARYQDAVGETNYRKALQAIKDGGYATDPDYVSKLVAIIERYNLDKYDVIYDKIESNQSLAAIGTVAENKEQEVIWSAPYNTENANKIETLENYSGRNLEISWEAKTEKGLWYFIRENNKDIGWVNSNALKISYHQKEDENVHLTKYVDDLSAHVYRLPSPEKQFDNGTIAKYDRKALQVDKKITRGGYAWFRISEGEKVIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATDNVWTAPFNTKNAEKLAPLADYNNEKLEIVTRAKAGNTLWYQFKVDGKLVGWASEKDLNVFYTPAKEEPVKQVAYVKDPTAKLYNKPVESTSTNPKAVGFYYGKLLAVDKTATILGEDWLHLKDSQNSLGWIKAIDINS
>NZ_MAKW01000024.1|WP_003733022.1|29_1058_-|Mrp/NBP35-family-ATP-binding-protein
MLNEQQITRLLYRLQDPVLEASLEETEGVLEVQVLEETANIKIALADPAVETDHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSEASETKFLAIASGKGGVGKSTVSANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPHKENGQIIPVETHGIQMISMDFFVEQGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGTGDVALDIHTLIPKCNELIVTTPHYAAASVASRAGYMAAKNNHKIIGVIENMSYLTLADGQVLKVFGQGGGEKVAADLETQLLIQLPIEQPEPNGNGYVSALFNSSSTSGKAYKTLAEKIIPYLS
>NZ_MAKW01000024.1|WP_003733026.1|6289_6952_-|type-II-A-CRISPR-associated-protein-Csn2
MNFNFKLLDEPITIEDSTIFVIEDVRVFANVAKLFYQYDETEELKVFNTKQHPLKSSELMLVTDILGHDINSAATLKLIYTDLEQQLNEKPEVKSMIDKLTATISELIGYELLEHELDLEEDEITVIELFKALGIKIETKSDTVFEKLIEIVQVYKYLSKKKLLVLINVCSYLTEEELLELRRYISLYQVKVLFIEPRKIKGSPQVTLDPDYFLHVENSV
>NZ_MAKW01000024.1|WP_003733027.1|6941_7283_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMLLMFDMPTDTAKERKAYRQFRRFILSEGFIMHQYSVYSKILLNGTASKAMLARLKQQNPKKGLITLLTVTEKQFARMVYLSGEQNKSVGNSDARLIFLGDAIDEF
>NZ_MAKW01000024.1|WP_031668146.1|7279_8146_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVVVNSHSKLSYKNQHLVFKSAYQHEMIHLSEIDVLILETTDITLTTMLINCLVAENILILFCDDKRLPIGKVLPFYGRHDSSLQLSKQLGWDSELKSEVWTEIISQKILNQNTFLSMLNYDEKADSLIKLHETLEIFDPTNREGHAARIYFNQLFGNDFTREQENDINSGLNYGYTLLLSIFARELVKSGCMTQFGLKHSNQFNDFNFASDIMEPFRPLVDQIVYEKRNEDFQVIKRSLFELFNKQFDYNDQHMFLTNIASDYTKKIVKVLNEEREGVPEFRI
>NZ_MAKW01000024.1|WP_003733029.1|8146_12151_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKKPYTIGLDIGTNSVGWAVLTDQYDLVKRKMKISGDSEKKQIKKNFWGVRLFEKGETAAKRRMSRTARRRIERRRNRISYLQEIFAIQMNEVDDNFFNRLKESFYAESDKKYNRHPFFGTVEEEVAYYKDFPTIYHLRKELIDSQKKADLRLVYLALAHIIKYRGHFLIEGALDTKNTSIDEMFKQFLQIYNQVFANDIEEASLKKTEKNQEVAQILAEKFTRKDKLDKILSLYPGEKTTGVFAQFVNIIVGSTGKFKKHFNLHEKKDINCAEDTYDTDLESLLAIIGDEFAEVFVAAKNAYNAVVLSNIITVTDSTTRAKLSASLIERFENHKEDLKKMKRFVRTYLPEKYDEIFDDTEKHGYAGYISGKTKQADFYKYMKATLEKIEGADYFIAKIEEENFLRKQRTFDNGVIPHQLHLEELEAILHQQAKYYPFLREDYEKIKSLVTFRIPYFVGPLAKGQSEFAWLTRKADGEIRPWNIEEKVDFGKSAVDFIEKMTNKDTYLPKENVLPKHSLCYQKYMVYNELTKVRYIDDQGKTNYFSGQEKQQIFNDLFKQKRKVKKKDLELFLRNINQIESPTIEGLEDSFNASYATYHDLLKVGMKQEILDNPLNTEMLEDIVKILTVFEDKRMIKEQLQQFSDVLDGTVLKKLERRHYTGWGRLSAKLLVGIRDKQSHLTILDYLMNDDGLNRNLMQLINDSNLSFKSIIEKEQVSTTDKDLQSIVAELAGSPAIKKGILQSLKIVDELVSVMGYPPQTIVVEMARENQTTNKGKNNSKPRYKSLEKAIKEFGSQILKEHPTDNQELKNNRLYLYYLQNGKDMYTGQELDIHNLSNYDIDHIVPQSFITDNSVDNLVLTSSAGNREKGDNVPPLEIVQKRKIFWEKLYQGNLMSKRKFDYLTKAERGGLTEADKARFIHRQLVETRQITKNVANILHQRFNYKTDGNKDTMETVRIVTLKSALVSQFRKQFQFYKVREVNDYHHAHDAYLNGVVANTLLKVYPQLEPEFVYGEYHQFGWFKANKATAKKQFYTNIMLFFAQKDRIIDENGEILWDKRYLETVKKVLGYRQMNIVKKTEIQKGEFSNVTPNPKGKSNKLIPRKKDWDPIKYGGFDGSKMAYAIIIEYEKQKRKVRIEKKLIQINIMEREAFEKDEKTFLEEKGYHQPKVLIKVPKYTLYECKNGRRRMLGSANEAHKGNQMLLPNHLMALLYHAEKYEAIDGESLAYIEVHRALFDELLAYISEFARKYTLSNDRLDEINMLYERNKDGDVKSIAESFVSLKKFNAFGVHQDFSFFGTKIERKRDRKLNELLNSTIIYQSITGLYESRKRLDN
>NZ_MAKW01000024.1|WP_003733030.1|12675_13164_-|hypothetical-protein
MKEDILAVYKKFEINNLNMFFDDLIEYVNKYYTVFSKYISLDYLDAITRLDSTSLILGHSDDNFEIAIPFYTNKVIEGLNEEELSNQVSSLIWDLSAYMTEELCPSCNDSNLRLTTMVSREDTLVKFCDECLYTGIRNERVEIEEDLVPAPKKKVEEYLRGK
>NZ_MAKW01000024.1|WP_003733031.1|13173_14559_-|hypothetical-protein
MSRIDIAELNEFLHNLKSSNDEARRMLGKMQEVTNAYATDTSLKGKAIETSQAYFDQTYSVICKSLIEALDESEERLERYIREFGEQVDSSYNARIDAEMLQEAIFRLAEIKRKQEDLLQRMSASTGTLHEGEQQRLRTQFTDALEQEKILERYIAFEQSHGRFFDSFSELVYCAGKAVRELAANVTFNSQTGTYDIGKLDTNKFHALQKFLPKKKKYNFNEYEIRWNGAAHILLRGDVVDAEATAAYNDAVAKGELPKVSNQATESAEEINAVVNALKKGQDPITGQEISKAQSFGIAIGLVYMYVGGKYKGRKIKLPKNALENLEKQQAFKDKEVGGADIPNPNVGIVQSRVNLAENPTRFSPSKNAGMKHVRNRHYNPSKNAGQFTIPESDLKNILQSKQVVNTPVKQIESGDFERVIDIGKNMGTVKPSLGGQTTTWIKVITDKAGNIITTYPVPKP
>NZ_MAKW01000024.1|WP_003723652.1|14850_15243_-|30S-ribosomal-protein-S9
MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDSRMKERKKPGLKGARRAPQFSKR
>NZ_MAKW01000024.1|WP_003727703.1|15264_15702_-|50S-ribosomal-protein-L13
MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQQPEVYELRG
>NZ_MAKW01000024.1|WP_003733032.1|15896_16643_-|tRNA-pseudouridine(38-40)-synthase-TruA
MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRVTASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQGLYLWRVDYE
>NZ_MAKW01000024.1|WP_003733033.1|16648_17446_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFVYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLANGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLLRWRFADTFLLISLAVLSGLLFWLRS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_MAKW01000024_1	1.6\|5568\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5568-5597	30	NZ_MAKW01000028.1	3607-3636	2	0.933

1. spacer 1.6|5568|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to position: 3607-3636, mismatch: 2, identity: 0.933

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
tagcctttataattaaattgaaggtgcgga	Protospacer
**.****** ********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_MAKW01000024_1	1.5\|5501\|31\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5501-5531	31	KJ094022	Listeria phage LP-030-3, complete genome	16313-16343	0	1.0
NZ_MAKW01000024_1	1.6\|5568\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5568-5597	30	KJ094023	Listeria phage LP-101, complete genome	19426-19455	0	1.0
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NC_003216	Listeria phage A118, complete genome	6554-6583	0	1.0
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	AJ242593	Bacteriophage A118 complete genome	6554-6583	0	1.0
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	KJ094022	Listeria phage LP-030-3, complete genome	14945-14974	0	1.0
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	MN172529	Listeria phage LP-039, complete genome	60277-60306	0	1.0
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	61623-61652	0	1.0
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	NC_025440	Listeria phage WIL-1, complete genome	105560-105589	0	1.0
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	NC_047872	Listeria phage LMTA-94, complete genome	71109-71138	0	1.0
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	KJ591604	Listeria phage LMTA-148, complete genome	68215-68244	0	1.0
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	KJ591605	Listeria phage LMTA-57, complete genome	81858-81887	0	1.0
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	KJ094033	Listeria phage LP-048, complete genome	62734-62763	0	1.0
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	KJ668715	Listeria phage LMTA-34, partial genome	57972-58001	0	1.0
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	NC_042048	Listeria phage LMTA-34, complete genome	75832-75861	0	1.0
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	NC_041862	Listeria phage LP-064, complete genome	70234-70263	0	1.0
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	JX126918	Listeria phage LP-125, complete genome	70236-70265	0	1.0
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	NC_024360	Listeria phage LMSP-25, complete genome	75832-75861	0	1.0
NZ_MAKW01000024_1	1.5\|5501\|31\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5501-5531	31	KP399678	Listeria phage vB_LmoS_293, complete genome	7920-7950	1	0.968
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	MT438761	Listeria virus P61, complete genome	72024-72053	1	0.967
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	MT178766	Listeria virus P100plus, complete genome	27249-27278	1	0.967
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	DQ003638	Listeria phage A511, complete genome	60814-60843	1	0.967
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	MT178767	Listeria virus P200, complete genome	27249-27278	1	0.967
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	DQ004855	Listeria bacteriophage P100, complete genome	27248-27277	1	0.967
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	MN128594	Listeria phage LP-066, complete genome	61773-61802	1	0.967
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	79360-79389	1	0.967
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	KJ094030	Listeria phage LP-083-2, complete genome	66939-66968	1	0.967
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	60123-60152	1	0.967
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	KJ535721	Listeria phage List-36, complete genome	68224-68253	1	0.967
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	KJ094031	Listeria phage LP-124, complete genome	29054-29083	1	0.967
NZ_MAKW01000024_1	1.2\|5303\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5303-5332	30	KJ094028	Listeria phage LP-083-1 contig 2, partial genome	18565-18594	2	0.933
NZ_MAKW01000024_1	1.2\|5303\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5303-5332	30	DQ003641	Listeria phage P35, complete genome	34695-34724	2	0.933
NZ_MAKW01000024_1	1.5\|5501\|31\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5501-5531	31	MH341452	Listeria phage PSU-VKH-LP040, complete genome	7933-7963	2	0.935
NZ_MAKW01000024_1	1.5\|5501\|31\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5501-5531	31	DQ003637	Listeria phage A500, complete genome	7899-7929	2	0.935
NZ_MAKW01000024_1	1.6\|5568\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5568-5597	30	NC_003216	Listeria phage A118, complete genome	20408-20437	2	0.933
NZ_MAKW01000024_1	1.6\|5568\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5568-5597	30	AJ242593	Bacteriophage A118 complete genome	20408-20437	2	0.933
NZ_MAKW01000024_1	1.6\|5568\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5568-5597	30	X85008	Bacteriophage A118 hol118 and ply118 genes	656-685	2	0.933
NZ_MAKW01000024_1	1.5\|5501\|31\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5501-5531	31	NC_003216	Listeria phage A118, complete genome	7919-7949	4	0.871
NZ_MAKW01000024_1	1.5\|5501\|31\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5501-5531	31	AJ242593	Bacteriophage A118 complete genome	7919-7949	4	0.871
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	MN693541	Marine virus AFVG_25M436, complete genome	24008-24037	5	0.833
NZ_MAKW01000024_1	1.14\|6096\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6096-6125	30	MK327943	Escherichia phage vB_EcoM_G53, complete genome	71695-71724	6	0.8
NZ_MAKW01000024_1	1.1\|5237\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT	5237-5266	30	MK813941	Aeromonas phage 4_L372XY, complete genome	93420-93449	7	0.767
NZ_MAKW01000024_1	1.8\|5700\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5700-5729	30	NC_041887	Rhodococcus phage Weasels2, complete genome	68085-68114	7	0.767
NZ_MAKW01000024_1	1.9\|5766\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5766-5795	30	NC_015498	Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence	13562-13591	7	0.767
NZ_MAKW01000024_1	1.11\|5898\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5898-5927	30	NZ_CP053711	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence	17299-17328	7	0.767
NZ_MAKW01000024_1	1.11\|5898\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5898-5927	30	NZ_CP053711	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence	69337-69366	7	0.767
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NZ_CP042479	Citrobacter freundii strain C50 plasmid pC50_001, complete sequence	5535-5564	7	0.767
NZ_MAKW01000024_1	1.6\|5568\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5568-5597	30	NZ_CP043436	Campylobacter fetus subsp. venerealis NCTC 10354 plasmid p3226, complete sequence	2890-2919	8	0.733
NZ_MAKW01000024_1	1.6\|5568\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5568-5597	30	NZ_CP016721	Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence	23276-23305	8	0.733
NZ_MAKW01000024_1	1.6\|5568\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5568-5597	30	NZ_CP016727	Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence	23275-23304	8	0.733
NZ_MAKW01000024_1	1.6\|5568\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5568-5597	30	NZ_CP008809	Campylobacter fetus subsp. fetus 04/554 plasmid pCFF04554, complete sequence	8547-8576	8	0.733
NZ_MAKW01000024_1	1.6\|5568\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5568-5597	30	NZ_CP008812	Campylobacter fetus subsp. venerealis 97/608 plasmid pCFV97608-2, complete sequence	17700-17729	8	0.733
NZ_MAKW01000024_1	1.6\|5568\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5568-5597	30	NZ_CP018792	Campylobacter sp. RM8964 plasmid pVIC8964, complete sequence	21826-21855	8	0.733
NZ_MAKW01000024_1	1.6\|5568\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5568-5597	30	NZ_CP016699	Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence	55457-55486	8	0.733
NZ_MAKW01000024_1	1.6\|5568\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5568-5597	30	NZ_CP018794	Campylobacter sp. RM12175 plasmid pVIC12175-1, complete sequence	22093-22122	8	0.733
NZ_MAKW01000024_1	1.6\|5568\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5568-5597	30	KC699836	Bacillus phage SIOphi, partial genome	2244-2273	8	0.733
NZ_MAKW01000024_1	1.9\|5766\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5766-5795	30	NZ_CP015799	Borrelia mayonii strain MN14-1539 plasmid cp32-13, complete sequence	7241-7270	8	0.733
NZ_MAKW01000024_1	1.11\|5898\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5898-5927	30	NC_014120	Paraburkholderia sp. CCGE1002 plasmid pBC201, complete sequence	170278-170307	8	0.733
NZ_MAKW01000024_1	1.12\|5964\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5964-5993	30	NC_015427	Clostridium botulinum BKT015925 plasmid p4BKT015925, complete sequence	20826-20855	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NZ_CP041048	Citrobacter sp. CF971 plasmid pBM527-2, complete sequence	49887-49916	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	MN783744	Klebsiella oxytoca plasmid pFDL-VIM, complete sequence	53506-53535	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NC_012885	Aeromonas hydrophila plasmid pRA1, complete sequence	6505-6534	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NZ_CP022274	Citrobacter freundii strain 18-1 plasmid pA18-1, complete sequence	53211-53240	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NZ_CP042536	Citrobacter freundii strain E51 plasmid pE51_002, complete sequence	5535-5564	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NZ_CP034714	Salmonella enterica subsp. enterica serovar Mikawasima strain RSE15 plasmid pRSE15, complete sequence	5534-5563	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NZ_CP010360	Enterobacter roggenkampii strain 35734 plasmid p35734-141.404kb, complete sequence	111873-111902	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NZ_CP012168	Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-239.973kb, complete sequence	228661-228690	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	MN783743	Escherichia coli plasmid pGA_VIM, complete sequence	64763-64792	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NZ_CP034084	Klebsiella pneumoniae subsp. pneumoniae strain R210-2 plasmid pR210-2-VIM, complete sequence	5538-5567	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NZ_MH220284	Aeromonas sp. pRIVM0001_VIM-1 plasmid pRIVM0001_VIM-1_171012_B12, complete sequence	5494-5523	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NZ_MG228427	Kluyvera cryocrescens strain BO64W plasmid pKC-BO-N1-VIM, complete sequence	5538-5567	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NZ_MG550958	Escherichia coli strain G3216 plasmid pG3216.2, complete sequence	38131-38160	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NZ_MH325469	Enterobacter hormaechei strain Ec13 plasmid pEc13, complete sequence	5811-5840	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NZ_MH325468	Enterobacter hormaechei strain Ec09 plasmid pEc09, complete sequence	5811-5840	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NZ_MH594478	Citrobacter freundii strain AA593 plasmid pIBAC_Incx3_A/C, complete sequence	30452-30481	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NZ_MH594477	Citrobacter freundii strain AA535 plasmid pIBAC_IncA/C, complete sequence	31209-31238	8	0.733
NZ_MAKW01000024_1	1.13\|6030\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	6030-6059	30	NZ_MG053108	Citrobacter freundii strain 33587 plasmid pCf587, complete sequence	6505-6534	8	0.733
NZ_MAKW01000024_1	1.9\|5766\|30\|NZ_MAKW01000024\|CRISPRCasFinder,CRT,PILER-CR	5766-5795	30	JQ680352	Unidentified phage clone 1013_scaffold1713 genomic sequence	5412-5441	9	0.7

1. spacer 1.5|5501|31|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 0, identity: 1.0

tcgaatgtgtaagcttctgagtaacctagca	CRISPR spacer
tcgaatgtgtaagcttctgagtaacctagca	Protospacer
*******************************

2. spacer 1.6|5568|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
taacctttaaaattaaattgaaggtgcgga	Protospacer
******************************

3. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
tacatcgctaccaatcaatccgctattaag	Protospacer
******************************

4. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
tacatcgctaccaatcaatccgctattaag	Protospacer
******************************

5. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 0, identity: 1.0

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
tacatcgctaccaatcaatccgctattaag	Protospacer
******************************

6. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 0, identity: 1.0

atctatattatcatacgtcaaggaagggta	CRISPR spacer
atctatattatcatacgtcaaggaagggta	Protospacer
******************************

7. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 0, identity: 1.0

atctatattatcatacgtcaaggaagggta	CRISPR spacer
atctatattatcatacgtcaaggaagggta	Protospacer
******************************

8. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 0, identity: 1.0

atctatattatcatacgtcaaggaagggta	CRISPR spacer
atctatattatcatacgtcaaggaagggta	Protospacer
******************************

9. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 0, identity: 1.0

atctatattatcatacgtcaaggaagggta	CRISPR spacer
atctatattatcatacgtcaaggaagggta	Protospacer
******************************

10. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 0, identity: 1.0

atctatattatcatacgtcaaggaagggta	CRISPR spacer
atctatattatcatacgtcaaggaagggta	Protospacer
******************************

11. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 0, identity: 1.0

atctatattatcatacgtcaaggaagggta	CRISPR spacer
atctatattatcatacgtcaaggaagggta	Protospacer
******************************

12. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 0, identity: 1.0

atctatattatcatacgtcaaggaagggta	CRISPR spacer
atctatattatcatacgtcaaggaagggta	Protospacer
******************************

13. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to KJ668715 (Listeria phage LMTA-34, partial genome) position: , mismatch: 0, identity: 1.0

atctatattatcatacgtcaaggaagggta	CRISPR spacer
atctatattatcatacgtcaaggaagggta	Protospacer
******************************

14. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 0, identity: 1.0

atctatattatcatacgtcaaggaagggta	CRISPR spacer
atctatattatcatacgtcaaggaagggta	Protospacer
******************************

15. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 0, identity: 1.0

atctatattatcatacgtcaaggaagggta	CRISPR spacer
atctatattatcatacgtcaaggaagggta	Protospacer
******************************

16. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 0, identity: 1.0

atctatattatcatacgtcaaggaagggta	CRISPR spacer
atctatattatcatacgtcaaggaagggta	Protospacer
******************************

17. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 0, identity: 1.0

atctatattatcatacgtcaaggaagggta	CRISPR spacer
atctatattatcatacgtcaaggaagggta	Protospacer
******************************

18. spacer 1.5|5501|31|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 1, identity: 0.968

tcgaatgtgtaagcttctgagtaacctagca	CRISPR spacer
tcgaatgtgtaagcttctgagtaacctagta	Protospacer
*****************************.*

19. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 1, identity: 0.967

atctatattatcatacgtcaaggaagggta	CRISPR spacer
gtctatattatcatacgtcaaggaagggta	Protospacer
.*****************************

20. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 1, identity: 0.967

atctatattatcatacgtcaaggaagggta	CRISPR spacer
gtctatattatcatacgtcaaggaagggta	Protospacer
.*****************************

21. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 1, identity: 0.967

atctatattatcatacgtcaaggaagggta	CRISPR spacer
gtctatattatcatacgtcaaggaagggta	Protospacer
.*****************************

22. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 1, identity: 0.967

atctatattatcatacgtcaaggaagggta	CRISPR spacer
gtctatattatcatacgtcaaggaagggta	Protospacer
.*****************************

23. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 1, identity: 0.967

atctatattatcatacgtcaaggaagggta	CRISPR spacer
gtctatattatcatacgtcaaggaagggta	Protospacer
.*****************************

24. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 1, identity: 0.967

atctatattatcatacgtcaaggaagggta	CRISPR spacer
gtctatattatcatacgtcaaggaagggta	Protospacer
.*****************************

25. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 1, identity: 0.967

atctatattatcatacgtcaaggaagggta	CRISPR spacer
gtctatattatcatacgtcaaggaagggta	Protospacer
.*****************************

26. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 1, identity: 0.967

atctatattatcatacgtcaaggaagggta	CRISPR spacer
gtctatattatcatacgtcaaggaagggta	Protospacer
.*****************************

27. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 1, identity: 0.967

atctatattatcatacgtcaaggaagggta	CRISPR spacer
gtctatattatcatacgtcaaggaagggta	Protospacer
.*****************************

28. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to KJ535721 (Listeria phage List-36, complete genome) position: , mismatch: 1, identity: 0.967

atctatattatcatacgtcaaggaagggta	CRISPR spacer
gtctatattatcatacgtcaaggaagggta	Protospacer
.*****************************

29. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 1, identity: 0.967

atctatattatcatacgtcaaggaagggta	CRISPR spacer
gtctatattatcatacgtcaaggaagggta	Protospacer
.*****************************

30. spacer 1.2|5303|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to KJ094028 (Listeria phage LP-083-1 contig 2, partial genome) position: , mismatch: 2, identity: 0.933

accgaagtaggttagggtatcgccgatttt	CRISPR spacer
tccgaaataggttagggtatcgccgatttt	Protospacer
 *****.***********************

31. spacer 1.2|5303|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to DQ003641 (Listeria phage P35, complete genome) position: , mismatch: 2, identity: 0.933

accgaagtaggttagggtatcgccgatttt	CRISPR spacer
tccgaaataggttagggtatcgccgatttt	Protospacer
 *****.***********************

32. spacer 1.5|5501|31|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 2, identity: 0.935

tcgaatgtgtaagcttctgagtaacctagca	CRISPR spacer
tcaaacgtgtaagcttctgagtaacctagca	Protospacer
**.**.*************************

33. spacer 1.5|5501|31|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 2, identity: 0.935

tcgaatgtgtaagcttctgagtaacctagca	CRISPR spacer
tcaaacgtgtaagcttctgagtaacctagca	Protospacer
**.**.*************************

34. spacer 1.6|5568|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 2, identity: 0.933

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
tagcctttataattaaattgaaggtgcgga	Protospacer
**.****** ********************

35. spacer 1.6|5568|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 2, identity: 0.933

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
tagcctttataattaaattgaaggtgcgga	Protospacer
**.****** ********************

36. spacer 1.6|5568|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 2, identity: 0.933

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
tagcctttataattaaattgaaggtgcgga	Protospacer
**.****** ********************

37. spacer 1.5|5501|31|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 4, identity: 0.871

tcgaatgtgtaagcttctgagtaacctagca	CRISPR spacer
tcgaatgtgtaagcttccgaataacctaaaa	Protospacer
*****************.**.*******. *

38. spacer 1.5|5501|31|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 4, identity: 0.871

tcgaatgtgtaagcttctgagtaacctagca	CRISPR spacer
tcgaatgtgtaagcttccgaataacctaaaa	Protospacer
*****************.**.*******. *

39. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to MN693541 (Marine virus AFVG_25M436, complete genome) position: , mismatch: 5, identity: 0.833

-tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ataca-ggttaccaatcaaaccgctattaac	Protospacer
 ****  *.********** **********

40. spacer 1.14|6096|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to MK327943 (Escherichia phage vB_EcoM_G53, complete genome) position: , mismatch: 6, identity: 0.8

atctatattatcatacgtcaaggaagggta	CRISPR spacer
gtctatagtatcatacctcaaggagaagta	Protospacer
.****** ******** *******...***

41. spacer 1.1|5237|30|NZ_MAKW01000024|CRISPRCasFinder,CRT matches to MK813941 (Aeromonas phage 4_L372XY, complete genome) position: , mismatch: 7, identity: 0.767

ttcgtccaatgtacctcgccttttttgtct	CRISPR spacer
taatttcaatgtacctcgccaattttgtcg	Protospacer
*   *.**************  *******

42. spacer 1.8|5700|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NC_041887 (Rhodococcus phage Weasels2, complete genome) position: , mismatch: 7, identity: 0.767

tcatatattatgaatatcgagatagtgttc	CRISPR spacer
ttctatattatgaagatcgaaatagttatg	Protospacer
*. *********** *****.*****  *

43. spacer 1.9|5766|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NC_015498 (Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence) position: , mismatch: 7, identity: 0.767

gttttctattttggtgactttagtactttt	CRISPR spacer
gccttctattttagtgactttagtagtgaa	Protospacer
*..*********.************ *

44. spacer 1.11|5898|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053711 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

tattcgatctatcggacgtgtcgacattat	CRISPR spacer
gattcgatctagcggacgtgacgacacctc	Protospacer
 ********** ******** *****.. .

45. spacer 1.11|5898|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053711 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

tattcgatctatcggacgtgtcgacattat	CRISPR spacer
gattcgatctagcggacgtgacgacacctc	Protospacer
 ********** ******** *****.. .

46. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042479 (Citrobacter freundii strain C50 plasmid pC50_001, complete sequence) position: , mismatch: 7, identity: 0.767

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcaca	Protospacer
 .**.*********** *********.* .

47. spacer 1.6|5568|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043436 (Campylobacter fetus subsp. venerealis NCTC 10354 plasmid p3226, complete sequence) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
caacctttaaaattaaatttaaagaaatta	Protospacer
.****************** **.* .   *

48. spacer 1.6|5568|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016721 (Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
aagaatttaaaattaaatagaaggtgataa	Protospacer
 *.  ************* *******  .*

49. spacer 1.6|5568|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016727 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
aagaatttaaaattaaatagaaggtgataa	Protospacer
 *.  ************* *******  .*

50. spacer 1.6|5568|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP008809 (Campylobacter fetus subsp. fetus 04/554 plasmid pCFF04554, complete sequence) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
caacctttaaaattaaatttaaagaaatta	Protospacer
.****************** **.* .   *

51. spacer 1.6|5568|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP008812 (Campylobacter fetus subsp. venerealis 97/608 plasmid pCFV97608-2, complete sequence) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
caacctttaaaattaaatttaaagaaatta	Protospacer
.****************** **.* .   *

52. spacer 1.6|5568|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018792 (Campylobacter sp. RM8964 plasmid pVIC8964, complete sequence) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
caacctttaaaattaaatttaaagaaatta	Protospacer
.****************** **.* .   *

53. spacer 1.6|5568|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016699 (Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
aagaatttaaaattaaatagaaggtgacaa	Protospacer
 *.  ************* *******  .*

54. spacer 1.6|5568|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018794 (Campylobacter sp. RM12175 plasmid pVIC12175-1, complete sequence) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
caacctttaaaattaaatttaaagaaatta	Protospacer
.****************** **.* .   *

55. spacer 1.6|5568|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to KC699836 (Bacillus phage SIOphi, partial genome) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
tccaacttaaatttaaattgaaagtgcggg	Protospacer
*    .***** **********.******.

56. spacer 1.9|5766|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015799 (Borrelia mayonii strain MN14-1539 plasmid cp32-13, complete sequence) position: , mismatch: 8, identity: 0.733

gttttctattttggtgactttagtactttt	CRISPR spacer
gaaaataatgttggtgactttattactttt	Protospacer
*    . ** ************ *******

57. spacer 1.11|5898|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NC_014120 (Paraburkholderia sp. CCGE1002 plasmid pBC201, complete sequence) position: , mismatch: 8, identity: 0.733

tattcgatctatcggacgtgtcgacattat	CRISPR spacer
ttttcgatctatcggacgtggcgctgggaa	Protospacer
* ****************** ** ..  *

58. spacer 1.12|5964|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NC_015427 (Clostridium botulinum BKT015925 plasmid p4BKT015925, complete sequence) position: , mismatch: 8, identity: 0.733

tattgactcggaaatgaaaacaaaaggtca	CRISPR spacer
taaatcttcggaaataaaaacaaaaggttg	Protospacer
**    .********.************..

59. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041048 (Citrobacter sp. CF971 plasmid pBM527-2, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

60. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to MN783744 (Klebsiella oxytoca plasmid pFDL-VIM, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

61. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NC_012885 (Aeromonas hydrophila plasmid pRA1, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

62. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022274 (Citrobacter freundii strain 18-1 plasmid pA18-1, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

63. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042536 (Citrobacter freundii strain E51 plasmid pE51_002, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

64. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034714 (Salmonella enterica subsp. enterica serovar Mikawasima strain RSE15 plasmid pRSE15, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

65. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010360 (Enterobacter roggenkampii strain 35734 plasmid p35734-141.404kb, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

66. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012168 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-239.973kb, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

67. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to MN783743 (Escherichia coli plasmid pGA_VIM, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

68. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034084 (Klebsiella pneumoniae subsp. pneumoniae strain R210-2 plasmid pR210-2-VIM, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

69. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH220284 (Aeromonas sp. pRIVM0001_VIM-1 plasmid pRIVM0001_VIM-1_171012_B12, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

70. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG228427 (Kluyvera cryocrescens strain BO64W plasmid pKC-BO-N1-VIM, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

71. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG550958 (Escherichia coli strain G3216 plasmid pG3216.2, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

72. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH325469 (Enterobacter hormaechei strain Ec13 plasmid pEc13, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

73. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH325468 (Enterobacter hormaechei strain Ec09 plasmid pEc09, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

74. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH594478 (Citrobacter freundii strain AA593 plasmid pIBAC_Incx3_A/C, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

75. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH594477 (Citrobacter freundii strain AA535 plasmid pIBAC_IncA/C, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

76. spacer 1.13|6030|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG053108 (Citrobacter freundii strain 33587 plasmid pCf587, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

77. spacer 1.9|5766|30|NZ_MAKW01000024|CRISPRCasFinder,CRT,PILER-CR matches to JQ680352 (Unidentified phage clone 1013_scaffold1713 genomic sequence) position: , mismatch: 9, identity: 0.7

gttttctattttggtgactttagtactttt	CRISPR spacer
cctttctattttggtgagtttagtgaccca	Protospacer
 .*************** ******. ...

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

14. NZ_MAKW01000013

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2630 : 10916

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020246648.1\|2630_3923_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0
WP_003733239.1\|4003_4717_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	2.7e-42	38.7
WP_003722248.1\|4728_4974_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003733240.1\|4977_5661_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003733241.1\|5653_7873_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.5e-160	41.4
WP_003722245.1\|7857_9285_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_003733242.1\|9303_10353_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	4.6e-62	43.5
WP_003733243.1\|10349_10916_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.1e-25	35.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

15. NZ_MAKW01000012

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1007 : 8319

Listeria_phage(63.64%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050018466.1\|1007_1316_-	helix-turn-helix transcriptional regulator	A0A1X9IGD3	Lactococcus_phage	2.0e-10	50.8
WP_050018468.1\|1327_1807_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_039120231.1\|1886_2216_-	helix-turn-helix transcriptional regulator	R4IH08	Staphylococcus_phage	5.5e-14	47.9
WP_031669112.1\|2465_2750_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_031669113.1\|2909_3107_+	hypothetical protein	NA	NA	NA	NA
WP_054315023.1\|3402_3669_+	hypothetical protein	NA	NA	NA	NA
WP_054315021.1\|3908_4280_+	hypothetical protein	A0A2H4J134	uncultured_Caudovirales_phage	9.5e-23	45.3
WP_054315025.1\|4327_4972_+	hypothetical protein	A0A2H4J7I5	uncultured_Caudovirales_phage	1.7e-51	49.5
WP_031669120.1\|4973_5288_+	hypothetical protein	NA	NA	NA	NA
WP_054315020.1\|5478_5661_+	hypothetical protein	NA	NA	NA	NA
WP_077944802.1\|5657_6122_+	class I SAM-dependent methyltransferase	A0A059T693	Listeria_phage	2.1e-88	98.7
WP_054315018.1\|6118_6673_+	DUF1642 domain-containing protein	A8ATY9	Listeria_phage	8.5e-76	74.9
WP_003722558.1\|6675_6873_+	hypothetical protein	A0A0B5CU49	Listeria_phage	2.0e-27	95.4
WP_061106301.1\|6931_7099_+	hypothetical protein	NA	NA	NA	NA
WP_061106297.1\|7202_7379_+	hypothetical protein	A0A076G7F4	Listeria_phage	1.6e-20	84.5
WP_014930124.1\|7375_7777_+	hypothetical protein	A8ATD9	Listeria_phage	7.8e-71	95.5
WP_061106287.1\|7773_7980_+	hypothetical protein	A0A059T6C7	Listeria_phage	9.0e-31	95.6
WP_061106285.1\|7980_8319_+	hypothetical protein	A8ATE1	Listeria_phage	7.0e-57	98.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage