CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_MCHS01000029	Listeria monocytogenes strain P04-001 338, whole genome shotgun sequence	2 crisprs	cas6,cas8b2,cas7,cas5,cas3,cas2	6	21	1	0
NZ_MCHS01000017	Listeria monocytogenes strain P04-001 326, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MCHS01000038	Listeria monocytogenes strain P04-001 348, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MCHS01000016	Listeria monocytogenes strain P04-001 325, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MCHS01000025	Listeria monocytogenes strain P04-001 334, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MCHS01000033	Listeria monocytogenes strain P04-001 343, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MCHS01000032	Listeria monocytogenes strain P04-001 342, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MCHS01000024	Listeria monocytogenes strain P04-001 333, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MCHS01000009	Listeria monocytogenes strain P04-001 plasmid unnamed 317, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MCHS01000015	Listeria monocytogenes strain P04-001 324, whole genome shotgun sequence	0 crisprs	NA	0	0	0	1
NZ_MCHS01000020	Listeria monocytogenes strain P04-001 329, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MCHS01000014	Listeria monocytogenes strain P04-001 323, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MCHS01000036	Listeria monocytogenes strain P04-001 346, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MCHS01000001	Listeria monocytogenes strain P04-001 127, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MCHS01000031	Listeria monocytogenes strain P04-001 340, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MCHS01000012	Listeria monocytogenes strain P04-001 321, whole genome shotgun sequence	0 crisprs	cas3,DEDDh	0	0	1	0
NZ_MCHS01000021	Listeria monocytogenes strain P04-001 330, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MCHS01000035	Listeria monocytogenes strain P04-001 345, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MCHS01000019	Listeria monocytogenes strain P04-001 328, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MCHS01000005	Listeria monocytogenes strain P04-001 312, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MCHS01000002	Listeria monocytogenes strain P04-001 23, whole genome shotgun sequence	0 crisprs	csa3,DinG	0	0	1	0
NZ_MCHS01000006	Listeria monocytogenes strain P04-001 314, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MCHS01000008	Listeria monocytogenes strain P04-001 316, whole genome shotgun sequence	0 crisprs	cas3	0	0	0	0
NZ_MCHS01000022	Listeria monocytogenes strain P04-001 331, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MCHS01000026	Listeria monocytogenes strain P04-001 335, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MCHS01000007	Listeria monocytogenes strain P04-001 315, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MCHS01000011	Listeria monocytogenes strain P04-001 319, whole genome shotgun sequence	0 crisprs	csa3	0	0	2	0
NZ_MCHS01000018	Listeria monocytogenes strain P04-001 327, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MCHS01000039	Listeria monocytogenes strain P04-001 349, whole genome shotgun sequence	0 crisprs	WYL	0	0	1	0
NZ_MCHS01000010	Listeria monocytogenes strain P04-001 318, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MCHS01000004	Listeria monocytogenes strain P04-001 311, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MCHS01000003	Listeria monocytogenes strain P04-001 299, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MCHS01000037	Listeria monocytogenes strain P04-001 347, whole genome shotgun sequence	1 crisprs	csn2,cas2,cas1,cas9	4	14	0	0
NZ_MCHS01000028	Listeria monocytogenes strain P04-001 337, whole genome shotgun sequence	0 crisprs	NA	0	0	1	1
NZ_MCHS01000034	Listeria monocytogenes strain P04-001 344, whole genome shotgun sequence	0 crisprs	DinG	0	0	1	1
NZ_MCHS01000027	Listeria monocytogenes strain P04-001 336, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_MCHS01000030	Listeria monocytogenes strain P04-001 339, whole genome shotgun sequence	1 crisprs	WYL,casR	0	0	0	0
NZ_MCHS01000013	Listeria monocytogenes strain P04-001 322, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_MCHS01000023	Listeria monocytogenes strain P04-001 332, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_MCHS01000029_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_MCHS01000029_1

31815-32165

Unclear

I-A

Consensus_repeat	Method
GTTTTAGTTACTTATTGTGAAATGTAAATT	PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	CRISPRCasFinder
GTTTTAGTTACTTATTNTGAAATGTAAATT	CRT

5 spacers

cas6,cas8b2,cas7

The CRISPR arrays of NZ_MCHS01000029_1

>merge|NZ_MCHS01000029|1|31815-32165|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGTTACTTATTTTGAAATGTAAATTTGTCATCTGTGGTGTCTTCAACCACTTCTTCTATGTTTTAGTTACTTATTTTGAAATGTAAATTCTGTAAAATCAAAAGTATCATAGAAACAATCTTCGTTTTAGTTACTTATTGTGAAATGTAAATTTCGCCATGACGAAATCTAGCGCTTGTCCTACTAAGTTTTAGTTACTTATTGTGAAATGTAAATGGCACAGTCTTCACGATTTCGGGGATGGGGAAAACTGTTTTAGTTACTTATTGTGAAATGTAAATTAAACAAGTGCTTCTGGCAATACCAACGTTCCATCTTTTTAGTTACTTATTATGAAATGTAAATT

>NZ_MCHS01000029|1|1|31815-32165|PILER-CR
GTTTTAGTTACTTATTTTGAAATGTAAATT	TGTCATCTGTGGTGTCTTCAACCACTTCTTCTAT
GTTTTAGTTACTTATTTTGAAATGTAAATT	CTGTAAAATCAAAAGTATCATAGAAACAATCTTC
GTTTTAGTTACTTATTGTGAAATGTAAATT	TCGCCATGACGAAATCTAGCGCTTGTCCTACTAA
GTTTTAGTTACTTATTGTGAAATGTAAATG	GCACAGTCTTCACGATTTCGGGGATGGGGAAAACT
GTTTTAGTTACTTATTGTGAAATGTAAATT	AAACAAGTGCTTCTGGCAATACCAACGTTCCATC
TTTTTAGTTACTTATTATGAAATGTAAATT

>NZ_MCHS01000029|1|1|31815-32164|CRISPRCasFinder
GTTTTAGTTACTTATTTTGAAATGTAAAT	TTGTCATCTGTGGTGTCTTCAACCACTTCTTCTAT
GTTTTAGTTACTTATTTTGAAATGTAAAT	TCTGTAAAATCAAAAGTATCATAGAAACAATCTTC
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTCGCCATGACGAAATCTAGCGCTTGTCCTACTAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	GGCACAGTCTTCACGATTTCGGGGATGGGGAAAACT
GTTTTAGTTACTTATTGTGAAATGTAAAT	TAAACAAGTGCTTCTGGCAATACCAACGTTCCATC
TTTTTAGTTACTTATTATGAAATGTAAAT

>NZ_MCHS01000029|1|1|31815-32165|CRT
GTTTTAGTTACTTATTTTGAAATGTAAATT	TGTCATCTGTGGTGTCTTCAACCACTTCTTCTAT
GTTTTAGTTACTTATTTTGAAATGTAAATT	CTGTAAAATCAAAAGTATCATAGAAACAATCTTC
GTTTTAGTTACTTATTGTGAAATGTAAATT	TCGCCATGACGAAATCTAGCGCTTGTCCTACTAA
GTTTTAGTTACTTATTGTGAAATGTAAATG	GCACAGTCTTCACGATTTCGGGGATGGGGAAAACT
GTTTTAGTTACTTATTGTGAAATGTAAATT	AAACAAGTGCTTCTGGCAATACCAACGTTCCATC
TTTTTAGTTACTTATTATGAAATGTAAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_MCHS01000029.1\|WP_003721301.1\|37086_37518_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_MCHS01000029.1\|WP_015454208.1\|25690_26293_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
NZ_MCHS01000029.1\|WP_003721294.1\|29230_30502_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_MCHS01000029.1\|WP_003721304.1\|40282_41005_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_MCHS01000029.1\|WP_015454216.1\|39115_39931_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_MCHS01000029.1\|WP_010989498.1\|23626_25687_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_MCHS01000029.1\|WP_003721290.1\|26804_27203_+\|hypothetical-protein	unknown	unknown	unknown
NZ_MCHS01000029.1\|WP_003721293.1\|28922_29216_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_MCHS01000029.1\|WP_003721289.1\|26320_26788_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_MCHS01000029.1\|WP_003721292.1\|27860_28907_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_MCHS01000029.1\|WP_003721305.1\|41020_42709_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NZ_MCHS01000029.1\|WP_003721306.1\|42698_43568_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NZ_MCHS01000029.1\|WP_015454215.1\|37564_38995_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_MCHS01000029.1\|WP_009930754.1\|32554_33133_+\|hypothetical-protein	unknown	unknown	unknown
NZ_MCHS01000029.1\|WP_003733188.1\|33239_33920_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_MCHS01000029.1\|WP_003721298.1\|33944_34304_-\|Lin0512-family-protein	unknown	unknown	gnl\|CDD\|131113
NZ_MCHS01000029.1\|WP_031668874.1\|22867_23518_+\|transaldolase	unknown	unknown	gnl\|CDD\|223254
NZ_MCHS01000029.1\|WP_009932856.1\|34310_34769_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_MCHS01000029.1\|WP_015454211.1\|30641_31577_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_MCHS01000029.1\|WP_003721291.1\|27213_27864_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114

Protein	Function_ID	Function_description	E-value
NZ_MCHS01000029.1\|WP_003721301.1\|37086_37518_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NZ_MCHS01000029.1\|WP_015454208.1\|25690_26293_+\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	5.46618e-76
NZ_MCHS01000029.1\|WP_003721304.1\|40282_41005_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.75155e-33
NZ_MCHS01000029.1\|WP_015454216.1\|39115_39931_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.75333e-50
NZ_MCHS01000029.1\|WP_003721293.1\|28922_29216_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
NZ_MCHS01000029.1\|WP_003721294.1\|29230_30502_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
NZ_MCHS01000029.1\|WP_010989498.1\|23626_25687_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.36772e-80
NZ_MCHS01000029.1\|WP_003733188.1\|33239_33920_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	6.36121e-61
NZ_MCHS01000029.1\|WP_003721305.1\|41020_42709_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	5.75294e-26
NZ_MCHS01000029.1\|WP_003721306.1\|42698_43568_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.33672e-55
NZ_MCHS01000029.1\|WP_015454215.1\|37564_38995_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	2.52915e-100
NZ_MCHS01000029.1\|WP_003721289.1\|26320_26788_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	3.45565e-37
NZ_MCHS01000029.1\|WP_003721292.1\|27860_28907_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
NZ_MCHS01000029.1\|WP_003721298.1\|33944_34304_-\|Lin0512-family-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	5.62162e-67
NZ_MCHS01000029.1\|WP_031668874.1\|22867_23518_+\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	3.03794e-63
NZ_MCHS01000029.1\|WP_009932856.1\|34310_34769_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	9.15558e-13
NZ_MCHS01000029.1\|WP_015454211.1\|30641_31577_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	2.37195e-153
NZ_MCHS01000029.1\|WP_003721291.1\|27213_27864_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	4.74405e-108

>NZ_MCHS01000029.1|WP_015454211.1|30641_31577_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAIEVIACATHSVMAGNATERLQNSNIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NZ_MCHS01000029.1|WP_003721294.1|29230_30502_+|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>NZ_MCHS01000029.1|WP_003721293.1|28922_29216_+|PTS-sugar-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>NZ_MCHS01000029.1|WP_003721292.1|27860_28907_+|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>NZ_MCHS01000029.1|WP_003721291.1|27213_27864_+|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
>NZ_MCHS01000029.1|WP_003721290.1|26804_27203_+|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>NZ_MCHS01000029.1|WP_003721289.1|26320_26788_+|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQDKEKLLTEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>NZ_MCHS01000029.1|WP_015454208.1|25690_26293_+|SIS-domain-containing-protein
MDKKAILDNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>NZ_MCHS01000029.1|WP_010989498.1|23626_25687_+|BglG-family-transcription-antiterminator
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKDPNAIRDGIIDILSANIATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>NZ_MCHS01000029.1|WP_031668874.1|22867_23518_+|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRILELTDKQVFVQTVGFSYEEILADARMLLAMFGKEKIAIKIPAHEAGINVIDTLKKEDKTIQILGTAIYSADQAITAALAGADFVAPYVNRMSAANIDPFKEISQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK
>NZ_MCHS01000029.1|WP_009930754.1|32554_33133_+|hypothetical-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTITIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>NZ_MCHS01000029.1|WP_003733188.1|33239_33920_+|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLSFFPESLNVFHWHQDTFALPAGATRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILQIDEAFITPGKYVQSVEVMQEKDVPEDNKQMLEAILDYLINPKTI
>NZ_MCHS01000029.1|WP_003721298.1|33944_34304_-|Lin0512-family-protein
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>NZ_MCHS01000029.1|WP_009932856.1|34310_34769_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTSAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NZ_MCHS01000029.1|WP_003721301.1|37086_37518_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_MCHS01000029.1|WP_015454215.1|37564_38995_-|CapA-family-protein
MKRRTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPLKKTSPANVKTISSEAKKTLNSLASSGADKASISDLNQLIKEIKSYPTEKNDSGIYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKMWRIKSDPAHVAFLPASGVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNADAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_MCHS01000029.1|WP_015454216.1|39115_39931_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRLKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_MCHS01000029.1|WP_003721304.1|40282_41005_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIISKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKGAEIQLNEANCIINFSTGDAETGIIFYNALMSLRGSKVLFGAGNHITVKNIQIVPEKKIIGKRTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLMDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGIGTMTGSGFGMIEQF
>NZ_MCHS01000029.1|WP_003721305.1|41020_42709_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MRTEIEVRANDWLINAGLTGFLNIVGKENVRIDGQAIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLLKQTKFIDPYLDYKTSFLDPVIDYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK
>NZ_MCHS01000029.1|WP_003721306.1|42698_43568_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIIFQAESANYGESLGNISSLKKISRNNGDQYTYISRQAIRYNLMDQIGEKEAPVKAEGGGDKKVIQFLSEATITDFPELDFFGYLKTEKGSGGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKLNENMNIAQAEIHKSYYRYTITIDLDQIGIDGEIALDNKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNIVDVADNNIVIKNIKDLLTYEDIKENTRVGIIDGQFANSDEVKVELKAESVPAFFNDIKGKIDAYYESN

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Crispr_ID: NZ_MCHS01000029_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_MCHS01000029_2

47358-49654

Unclear

I-A

Consensus_repeat	Method
GTTTTAACTACTTATTATGAAATGTAAAT	PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	CRT

35 spacers

cas2,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NZ_MCHS01000029_2

>merge|NZ_MCHS01000029|2|47358-49654|PILER-CR,CRISPRCasFinder,CRT
GTTTTAACTACTTATTATGAAATGTAAATAAAGACCTTCGATTTCATTCTCACTTTCCAGTTAATGTTTTAACTACTTATTATGAAATGTAAATTTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGACGTTTTAACTACTTATTATGAAATGTAAATGCTGGTAAATTTGGCGGAACTAATCGTACTGAAATAGTTTTAACTACTTATTATGAAATGTAAATACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCAGTTTTAACTACTTATTATGAAATGTAAATTATAGTCCCCATATCCATCTGCTATTATCCTCCACGTTTTAACTACTTATTATGAAATGTAAATCGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAAGTTTTAACTACTTATTATGAAATGTAAATACGTTGGACAACGAGGTGAGTATGATATGACTCAAATGTTTTAACTACTTATTATGAAATGTAAATGCGGAATGCGAAGTTGTTATATATAACTTATCTCGCGTTTTAACTACTTATTATGAAATGTAAATTCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATGGTTTTAACTACTTATTATGAAATGTAAATGTGCATATCTCCTATATTCATGGCTGTATATGTGTGTTTTAACTACTTATTATGAAATGTAAATGTCCACATCGACAATAAAAAACACATTGTATCACTTGTTTTAACTACTTATTATGAAATGTAAATCTGGTTACTCAACTGGCGACAGTAATACACCTCAATGTTTTAACTACTTATTATGAAATGTAAATTTTGGATAGGTTGTTTCTGATAAATAGGTTCACGGTTTTAACTACTTATTATGAAATGTAAATAAGTCTACTTGGATTTAGCTCTACACCTGCAACATGAGTTTTAACTACTTATTATGAAATGTAAATAGAAAAAAAACATCTTTCCAATTTGTTGTTTTGCGTTTTAACTACTTATTATGAAATGTAAATAGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTAGTTTTAACTACTTATTATGAAATGTAAATTTGTTCGACGGCTTAGACAACCATCACGCTTCTTTAGTTTTAACTACTTATTATGAAATGTAAATTATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGAGTTTTAACTACTTATTATGAAATGTAAATCTCATAAGGATTTCGAGGCGGGTTAAACGACATGTAGTTTTAACTACTTATTATGAAATGTAAATGCTTTTTTCAACAATTTTATCACCAGATGTCATTAGTTTTAACTACTTATTATGAAATGTAAATTGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTCGTTTTAACTACTTATTATGAAATGTAAATAAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGGGTTTTAACTACTTATTATGAAATGTAAATGTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTTGTTTTAACTACTTATTATGAAATGTAAATTGTTATCTCCTGTGATGTAAAATAACCCTTCTATCGTTTTAACTACTTATTATGAAATGTAAATTAATACAAAATATTCATAACTCCTACATCATTATATAGTTTTAACTACTTATTATGAAATGTAAATTTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTCGTTTTAACTACTTATTATGAAATGTAAATTTGGATTTTATTAAATACAGAGTCACGGATTGTATTTGTTTTAACTACTTATTATGAAATGTAAATGGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGCGTTTTAACTACTTATTATGAAATGTAAATCACGTACTTTAATCGGCATCAAACCACCTCGATTTCGTTTTAACTACTTATTATGAAATCTAAATCAAGATATGCTAGAAATGGCGCAAATAGCGCGCGGTTTTAACTACTTATTATGAAATGTAAATACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATATGTTTTAACTACTTATTATGAAATGTAAATCAAAACAGAGAACGCGTGTTCATTATCGGACATCTTAGTTTTAACTACTTATTATGAAATGTAAATTTTTGAAATATGAGGACTTAGAAAATGAAAAAAATGTTTTAACTACTTATTATGAAATGTAAATAAAAACTATGCAATTAGCAAAGTGATTTTATGTAATTGTTTTAACTACTTATTATGAAATATAAATTAACGAGCCAATTAAACCATCTTCTTCTAGTAATGTTTTAACTACTTATTATGAAATCATAAA

>NZ_MCHS01000029|2|2|47358-49591|PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	GCTGGTAAATTTGGCGGAACTAATCGTACTGAAATA
GTTTTAACTACTTATTATGAAATGTAAAT	ACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAGTCCCCATATCCATCTGCTATTATCCTCCAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT
GTTTTAACTACTTATTATGAAATGTAAAT	GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC
GTTTTAACTACTTATTATGAAATGTAAAT	CACGTACTTTAATCGGCATCAAACCACCTCGATTTC
GTTTTAACTACTTATTATGAAATCTAAAT	CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT

>NZ_MCHS01000029|2|2|47358-49654|CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	GCTGGTAAATTTGGCGGAACTAATCGTACTGAAATA
GTTTTAACTACTTATTATGAAATGTAAAT	ACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAGTCCCCATATCCATCTGCTATTATCCTCCAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT
GTTTTAACTACTTATTATGAAATGTAAAT	GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC
GTTTTAACTACTTATTATGAAATGTAAAT	CACGTACTTTAATCGGCATCAAACCACCTCGATTTC
GTTTTAACTACTTATTATGAAATCTAAAT	CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT	TAACGAGCCAATTAAACCATCTTCTTCTAGTAAT
GTTTTAACTACTTATTATGAAATCATAAA

>NZ_MCHS01000029|2|2|47358-49654|CRT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	GCTGGTAAATTTGGCGGAACTAATCGTACTGAAATA
GTTTTAACTACTTATTATGAAATGTAAAT	ACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAGTCCCCATATCCATCTGCTATTATCCTCCAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT
GTTTTAACTACTTATTATGAAATGTAAAT	GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC
GTTTTAACTACTTATTATGAAATGTAAAT	CACGTACTTTAATCGGCATCAAACCACCTCGATTTC
GTTTTAACTACTTATTATGAAATCTAAAT	CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT	TAACGAGCCAATTAAACCATCTTCTTCTAGTAAT
GTTTTAACTACTTATTATGAAATCATAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_MCHS01000029.1\|WP_003721316.1\|54341_55094_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_MCHS01000029.1\|WP_003721310.1\|46881_47160_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_MCHS01000029.1\|WP_003721315.1\|52824_54141_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NZ_MCHS01000029.1\|WP_003721304.1\|40282_41005_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_MCHS01000029.1\|WP_015454216.1\|39115_39931_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_MCHS01000029.1\|WP_003733750.1\|50241_51657_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_MCHS01000029.1\|WP_003721321.1\|59951_61427_+\|membrane-protein	unknown	unknown	unknown
NZ_MCHS01000029.1\|WP_003721320.1\|58981_59722_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_MCHS01000029.1\|WP_003721307.1\|43545_44328_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NZ_MCHS01000029.1\|WP_003721305.1\|41020_42709_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NZ_MCHS01000029.1\|WP_003721306.1\|42698_43568_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NZ_MCHS01000029.1\|WP_003721311.1\|49726_50095_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NZ_MCHS01000029.1\|WP_015454215.1\|37564_38995_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_MCHS01000029.1\|WP_003721318.1\|55688_57350_-\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_MCHS01000029.1\|WP_015454222.1\|57605_58937_+\|DUF1254-domain-containing-protein	unknown	unknown	gnl\|CDD\|227659
NZ_MCHS01000029.1\|WP_085299704.1\|55199_55643_+\|hypothetical-protein	unknown	unknown	unknown
NZ_MCHS01000029.1\|WP_031668875.1\|44395_46579_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_MCHS01000029.1\|WP_009932856.1\|34310_34769_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_MCHS01000029.1\|WP_003721301.1\|37086_37518_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_MCHS01000029.1\|WP_003721314.1\|51788_52793_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851

Protein	Function_ID	Function_description	E-value
NZ_MCHS01000029.1\|WP_003721316.1\|54341_55094_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	5.24308e-64
NZ_MCHS01000029.1\|WP_003721310.1\|46881_47160_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.1393e-30
NZ_MCHS01000029.1\|WP_003721315.1\|52824_54141_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_MCHS01000029.1\|WP_003721304.1\|40282_41005_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.75155e-33
NZ_MCHS01000029.1\|WP_015454216.1\|39115_39931_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.75333e-50
NZ_MCHS01000029.1\|WP_003733750.1\|50241_51657_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.83532e-79
NZ_MCHS01000029.1\|WP_003721320.1\|58981_59722_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	2.56491e-51
NZ_MCHS01000029.1\|WP_003721307.1\|43545_44328_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.37797e-23
NZ_MCHS01000029.1\|WP_003721305.1\|41020_42709_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	5.75294e-26
NZ_MCHS01000029.1\|WP_003721306.1\|42698_43568_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.33672e-55
NZ_MCHS01000029.1\|WP_003721311.1\|49726_50095_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	1.10012e-41
NZ_MCHS01000029.1\|WP_015454215.1\|37564_38995_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	2.52915e-100
NZ_MCHS01000029.1\|WP_003721318.1\|55688_57350_-\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	3.54266e-147
NZ_MCHS01000029.1\|WP_015454222.1\|57605_58937_+\|DUF1254-domain-containing-protein	gnl\|CDD\|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	1.38609e-74
NZ_MCHS01000029.1\|WP_031668875.1\|44395_46579_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.29289e-60
NZ_MCHS01000029.1\|WP_009932856.1\|34310_34769_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	9.15558e-13
NZ_MCHS01000029.1\|WP_003721301.1\|37086_37518_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NZ_MCHS01000029.1\|WP_003721314.1\|51788_52793_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.07552e-20

>NZ_MCHS01000029.1|WP_003721310.1|46881_47160_+|CRISPR-associated-endonuclease-Cas2
MYVILIYDISIENGGAKVWRNVFKICKKYLTHVQKSVFEGEITPALLVKLRMELDKYIRDDQDSVIVFSSRQQRWLEKEFWGLTDEKTSNFF
>NZ_MCHS01000029.1|WP_031668875.1|44395_46579_+|CRISPR-associated-helicase/endonuclease-Cas3
MHKYLAKSNPEETIQEHTDNLLKNYQRLKKLYPAVEIDWYLLELVCLLHDLGKMNLLFQTKLGNASGKGKEIPHGYLSVAFVPDSKLEEMGYSEDEIKVVYQAIARHHERKYDFSDSEWKKEIIKLEEQWAGFIYSQLGGNAEYSSEVEMLYFYPGSRIFEGNSAADAETFKKYVLLKGLLNRIDFAASGGIDVELENDFLMDSMEVQLAHFKAENPEADWNALQKYMMQHQNENIVVIAETGMGKTEAGLLWLGNNKGFFTLPLRAAINAIYERITKNIVTTNQAERVGLLHSETYSQYLLHEGNAEMDIDEYYTRTRQMSLPITICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLILGLSYIDKFGGKFCIMTATLPGIVTDLLLENGVDFVQPEEKFVSSRIRHSMEMVHTEIESEFIKPFFNNNRILVICNTISKAKKIYSELKEHFQGEEIHLIHSQFIKRDRSAKEKAIFKDGQKDSTKKCIWVATQVVEASLDIDFDLLFTELSDVNGLFQRMGRCYRNRALDVDTNVYVFDGGAKVCSGIGTFIDKLIFVNSKTILNEHAGVLTEEKKMELVEQVYSTEALSGSEFYNDLIDKLNYVKAFESYLMNKADVRMRFRNINSVSVIPEEVWQDNAEEINSYFVTLRKTSKEISTKEKIIARTNLAEFMVSIPDYLYKKGESVVREINRYESVIEFKCGYSSDVGVFMR
>NZ_MCHS01000029.1|WP_003721307.1|43545_44328_+|type-I-B-CRISPR-associated-protein-Cas5
MLIMKAIRVRLWQDLVNFKKPTSFQLKETYPLPPYSTVIGMVHTLCGFTSYHEMKISIQGKYFSKVNDLATRYEFKNGMTYDASRHQIKVDKYGVSRGVSTVELLVDLELLLHIIPEDPSLVPIIEKAFREPIEFPSLGRREDIATIQKVEVVDVEKRQPKKSTEISDGYNAYVPISLTENNSVHFKSHESSVGRDKLLGTRYLLTEKYERVNHGTEKAPKFFRKWRKKDVIYSSRIFVSKKDVFFFDEDDYLVFIEEEE
>NZ_MCHS01000029.1|WP_003721306.1|42698_43568_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIIFQAESANYGESLGNISSLKKISRNNGDQYTYISRQAIRYNLMDQIGEKEAPVKAEGGGDKKVIQFLSEATITDFPELDFFGYLKTEKGSGGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKLNENMNIAQAEIHKSYYRYTITIDLDQIGIDGEIALDNKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNIVDVADNNIVIKNIKDLLTYEDIKENTRVGIIDGQFANSDEVKVELKAESVPAFFNDIKGKIDAYYESN
>NZ_MCHS01000029.1|WP_003721305.1|41020_42709_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MRTEIEVRANDWLINAGLTGFLNIVGKENVRIDGQAIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLLKQTKFIDPYLDYKTSFLDPVIDYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK
>NZ_MCHS01000029.1|WP_003721304.1|40282_41005_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIISKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKGAEIQLNEANCIINFSTGDAETGIIFYNALMSLRGSKVLFGAGNHITVKNIQIVPEKKIIGKRTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLMDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGIGTMTGSGFGMIEQF
>NZ_MCHS01000029.1|WP_015454216.1|39115_39931_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRLKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_MCHS01000029.1|WP_015454215.1|37564_38995_-|CapA-family-protein
MKRRTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPLKKTSPANVKTISSEAKKTLNSLASSGADKASISDLNQLIKEIKSYPTEKNDSGIYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKMWRIKSDPAHVAFLPASGVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNADAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_MCHS01000029.1|WP_003721301.1|37086_37518_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_MCHS01000029.1|WP_009932856.1|34310_34769_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTSAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NZ_MCHS01000029.1|WP_003721311.1|49726_50095_-|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGMAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVVVLLV
>NZ_MCHS01000029.1|WP_003733750.1|50241_51657_+|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPRKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK
>NZ_MCHS01000029.1|WP_003721314.1|51788_52793_+|ROK-family-transcriptional-regulator
MAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKLIRDLVENEEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLLGEPEFVEDMSGEDLDITALKRNTKDIICAFPKISCVVIGVPGIEIGGKLRAMDFPLLLNVQLRETLEAEVNLPVLVETDTNAAILGYKNRPVKEENIVGLYYPERFPPGAGLLMNGEILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMVLLTMSFYDPETIVLYTNFYFGQKDFMEELKEELKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI
>NZ_MCHS01000029.1|WP_003721315.1|52824_54141_-|6-phospho-beta-glucosidase
MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAGREKLEIVGNLAKRMVKKAGVNMEIHLTLDREEALKDADFVTTQLRVGLLDARVKDERIPNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVLRYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTKDVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAEHGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQIVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAEAAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK
>NZ_MCHS01000029.1|WP_003721316.1|54341_55094_+|MurR/RpiR-family-transcriptional-regulator
MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVSTTTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQIQNAVEILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLSDKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEMYQEANITSQLPALYTIENIAREIRTQLDKEKM
>NZ_MCHS01000029.1|WP_085299704.1|55199_55643_+|hypothetical-protein
MYSNMKEKVVFTLIMCSLMILCMSSYNIFLENGIGTDSLLIVLKAFVPFLFIGFLLDFFVVGKIVYRLHALLVSEDASKFKKIIIMQLLMVTFMCVLMSTLSLIVNQGEWSHLGILILRNYFVALFLQIFIVSPFVRLISPRIFALL
>NZ_MCHS01000029.1|WP_003721318.1|55688_57350_-|SulP-family-inorganic-anion-transporter
MFKHILLSLNGYKISYLRNDVISGVGVAALTIPVAMGYAQVAGLPPIYGLYASFLPVIAYVIFASSPQLIFGIDATASAITGSIILGTAGLAAGSKEAIALAPILAFFCAIFLVLFSVLKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGDSFFSSLGIIFGQFFQSNWISFAMGVVTVIIVITCKKVIPKIPMSLVVLVLGTMAAYFFKLDQYNVDIVGKIPVGFPSLALPDFGASSWALAIGGGLVCAIATFAGSLLPSESFAMRNKYTIDDNRELFAYGVSNFVAAFSGCSPASASVSRTAANEQFRGKTQMVSIVAATIIALIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKVSRREATVWIVAALGTLLVGVIFGVLLGIFLSFINVVSRSMKTPIAILGVIEGRHGYFDLKRKSEAKPIPNVVIYRYSASLFFGNFNKFADGLKEAVQDDTKLVIFEASAIINIDTTATESMKDLLKWLDDKGIEYYFADLIDHLKTSFRKHDLGYLIDNGYTKKTVEDALDAYYAEHK
>NZ_MCHS01000029.1|WP_015454222.1|57605_58937_+|DUF1254-domain-containing-protein
MATQKNLVDLATKAYIYGFPFIFNTQQIERYVTVGIGGTKQVPFNNFTHASRLAEPSDKFVSVNNDTIYSNAPIDVSAGPVVLSVPDTSGRYYVLQFVDAWSNNFAYVGKRATGTSAGKFLLTPPNWNGDVPADMIEIKFPTNIGIIIGRLACDGEADLPTVRELQEQLKITPLNEGKEVDGFPEYDRSLGKELAFFEQLRVYMAQFPPAERDLVKQESFAPIGLMEKGVSPYSNPSEELKNALKEGAKAGLANIKKATTNFKSENGWGLTQHLFDYNADFFEIGTKKSLDWVIEDREEAYIIRAVSAITALWGNHGYEAVYLMTWTDTDGNALNGKNKYTLELNPIPPVDSFWSITMYDLPEYFLCENPINRYSIGDRTPGIQYNDDGGITIVVSKDEPTDPKERANWLPAPDAEFRPMFRLYNPQQPLVDGSYHFPGFEKK
>NZ_MCHS01000029.1|WP_003721320.1|58981_59722_-|MerR-family-transcriptional-regulator
MQIKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSSNPYEEEARKLWGDKVVEKANEKVNNMSEKEQLTLKESFDAEFRHLASVRKLTPESEEAQLEIDHFFHYLNDTHGNIYSLEAFASLGEMYVNDERFTKNIDQFGDGLSQFLQEAMTIYAKNK
>NZ_MCHS01000029.1|WP_003721321.1|59951_61427_+|membrane-protein
MIRKVKSISMWLWHHLTPQIFAVICVFIITIIALFMPPYIGMADNGDFFRIFSSNGLFVNNTNYDALQFGHFVKEFGIYQYFNENQVAIYSSQSIFIQMALLLNKLFWSTTVFDVRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYVVAALTVFIFADTAYTAYFNSFFSEGLILIMMLYISAGFLLLYQHKYNDYAMLGLIFVASLILITAKQQNAPIAVVIAVCGILVFFIRKNRAFRISAAATFLVIFLSGVVMYAFIPGEFVTINQYQTMTRGVLLDSENPEKSLEEMGMNSEFALLKGTNFYQKYKMIDLDSKLMEKEFYPNYNFVTVLSYYLENPKQFGKMLDLSAQNSFSIRPFEMGNFEKATGYKFKEKTHFFSAYSDVKEKFAPAKFTFLILWALVFLICYGVSAFKHFREKNIRGTLLFDLIVLLIGSGFAVILVTIVGDGEADLTKHNFLFNVCFDLTMLIGAASLLEVYLKKRGERNA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_MCHS01000029_1	1.3\|31973\|34\|NZ_MCHS01000029\|PILER-CR,CRT	31973-32006	34	NZ_MCHS01000034.1	494235-494268	2	0.941
NZ_MCHS01000029_1	1.4\|32037\|35\|NZ_MCHS01000029\|PILER-CR,CRT	32037-32071	35	NZ_MCHS01000031.1	2172-2206	1	0.971
NZ_MCHS01000029_1	1.8\|31972\|35\|NZ_MCHS01000029\|CRISPRCasFinder	31972-32006	35	NZ_MCHS01000034.1	494234-494268	2	0.943
NZ_MCHS01000029_1	1.9\|32036\|36\|NZ_MCHS01000029\|CRISPRCasFinder	32036-32071	36	NZ_MCHS01000031.1	2172-2207	1	0.972
NZ_MCHS01000029_2	2.12\|48102\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	48102-48137	36	NZ_MCHS01000004.1	23055-23090	0	1.0
NZ_MCHS01000029_2	2.16\|48359\|34\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	48359-48392	34	NZ_MCHS01000004.1	23664-23697	0	1.0

1. spacer 1.3|31973|34|NZ_MCHS01000029|PILER-CR,CRT matches to position: 494235-494268, mismatch: 2, identity: 0.941

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccattacgaaatctagtgcttgtcctactaa	Protospacer
******* ***********.**************

2. spacer 1.4|32037|35|NZ_MCHS01000029|PILER-CR,CRT matches to position: 2172-2206, mismatch: 1, identity: 0.971

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaact	Protospacer
*******************.***************

3. spacer 1.8|31972|35|NZ_MCHS01000029|CRISPRCasFinder matches to position: 494234-494268, mismatch: 2, identity: 0.943

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccattacgaaatctagtgcttgtcctactaa	Protospacer
******** ***********.**************

4. spacer 1.9|32036|36|NZ_MCHS01000029|CRISPRCasFinder matches to position: 2172-2207, mismatch: 1, identity: 0.972

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

5. spacer 2.12|48102|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to position: 23055-23090, mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

6. spacer 2.16|48359|34|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to position: 23664-23697, mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_MCHS01000029_1	1.3\|31973\|34\|NZ_MCHS01000029\|PILER-CR,CRT	31973-32006	34	MT500540	Listeria phage LP-HM00113468, complete genome	26210-26243	0	1.0
NZ_MCHS01000029_1	1.8\|31972\|35\|NZ_MCHS01000029\|CRISPRCasFinder	31972-32006	35	MT500540	Listeria phage LP-HM00113468, complete genome	26209-26243	0	1.0
NZ_MCHS01000029_2	2.12\|48102\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	48102-48137	36	NC_003216	Listeria phage A118, complete genome	18563-18598	0	1.0
NZ_MCHS01000029_2	2.12\|48102\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	48102-48137	36	AJ242593	Bacteriophage A118 complete genome	18563-18598	0	1.0
NZ_MCHS01000029_2	2.16\|48359\|34\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	48359-48392	34	NC_003216	Listeria phage A118, complete genome	19172-19205	0	1.0
NZ_MCHS01000029_2	2.16\|48359\|34\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	48359-48392	34	AJ242593	Bacteriophage A118 complete genome	19172-19205	0	1.0
NZ_MCHS01000029_2	2.29\|49203\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49203-49238	36	KP399678	Listeria phage vB_LmoS_293, complete genome	6980-7015	0	1.0
NZ_MCHS01000029_1	1.2\|31909\|34\|NZ_MCHS01000029\|PILER-CR,CRT	31909-31942	34	DQ003642	Listeria phage A006, complete genome	5993-6026	1	0.971
NZ_MCHS01000029_1	1.3\|31973\|34\|NZ_MCHS01000029\|PILER-CR,CRT	31973-32006	34	NC_003216	Listeria phage A118, complete genome	20259-20292	1	0.971
NZ_MCHS01000029_1	1.3\|31973\|34\|NZ_MCHS01000029\|PILER-CR,CRT	31973-32006	34	AJ242593	Bacteriophage A118 complete genome	20259-20292	1	0.971
NZ_MCHS01000029_1	1.3\|31973\|34\|NZ_MCHS01000029\|PILER-CR,CRT	31973-32006	34	X85008	Bacteriophage A118 hol118 and ply118 genes	507-540	1	0.971
NZ_MCHS01000029_1	1.4\|32037\|35\|NZ_MCHS01000029\|PILER-CR,CRT	32037-32071	35	DQ003642	Listeria phage A006, complete genome	19079-19113	1	0.971
NZ_MCHS01000029_1	1.7\|31908\|35\|NZ_MCHS01000029\|CRISPRCasFinder	31908-31942	35	DQ003642	Listeria phage A006, complete genome	5993-6027	1	0.971
NZ_MCHS01000029_1	1.8\|31972\|35\|NZ_MCHS01000029\|CRISPRCasFinder	31972-32006	35	NC_003216	Listeria phage A118, complete genome	20259-20293	1	0.971
NZ_MCHS01000029_1	1.8\|31972\|35\|NZ_MCHS01000029\|CRISPRCasFinder	31972-32006	35	AJ242593	Bacteriophage A118 complete genome	20259-20293	1	0.971
NZ_MCHS01000029_1	1.8\|31972\|35\|NZ_MCHS01000029\|CRISPRCasFinder	31972-32006	35	X85008	Bacteriophage A118 hol118 and ply118 genes	507-541	1	0.971
NZ_MCHS01000029_1	1.9\|32036\|36\|NZ_MCHS01000029\|CRISPRCasFinder	32036-32071	36	DQ003642	Listeria phage A006, complete genome	19078-19113	1	0.972
NZ_MCHS01000029_2	2.6\|47712\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	47712-47747	36	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	60125-60160	1	0.972
NZ_MCHS01000029_2	2.6\|47712\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	47712-47747	36	NC_009812	Listeria phage B025, complete genome	27503-27538	1	0.972
NZ_MCHS01000029_2	2.29\|49203\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49203-49238	36	NC_003216	Listeria phage A118, complete genome	6982-7017	1	0.972
NZ_MCHS01000029_2	2.29\|49203\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49203-49238	36	AJ242593	Bacteriophage A118 complete genome	6982-7017	1	0.972
NZ_MCHS01000029_2	2.29\|49203\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49203-49238	36	MH341452	Listeria phage PSU-VKH-LP040, complete genome	6993-7028	1	0.972
NZ_MCHS01000029_2	2.31\|49331\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49331-49366	36	NC_021539	Listeria phage LP-030-2, complete genome	14044-14079	1	0.972
NZ_MCHS01000029_2	2.31\|49331\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49331-49366	36	AJ312240	Bacteriophage PSA complete genome	14022-14057	1	0.972
NZ_MCHS01000029_2	2.32\|49396\|37\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49396-49432	37	KY705255	Streptococcus phage P0095, complete genome	33666-33702	1	0.973
NZ_MCHS01000029_2	2.32\|49396\|37\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49396-49432	37	KY705251	Streptococcus phage P0091, complete genome	32778-32814	1	0.973
NZ_MCHS01000029_2	2.32\|49396\|37\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49396-49432	37	KX879643	Streptococcus phage CHPC1151, complete genome	31697-31733	1	0.973
NZ_MCHS01000029_2	2.32\|49396\|37\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49396-49432	37	MK202161	Streptococcus phage CHPC1282, complete genome	32484-32520	1	0.973
NZ_MCHS01000029_2	2.32\|49396\|37\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49396-49432	37	KY705252	Streptococcus phage P0092, complete genome	31845-31881	1	0.973
NZ_MCHS01000029_2	2.32\|49396\|37\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49396-49432	37	MH937506	Streptococcus phage CHPC1148, complete genome	35552-35588	1	0.973
NZ_MCHS01000029_2	2.32\|49396\|37\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49396-49432	37	KY705253	Streptococcus phage P0093, complete genome	32631-32667	1	0.973
NZ_MCHS01000029_2	2.32\|49396\|37\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49396-49432	37	KY705254	Streptococcus phage P0094, complete genome	31034-31070	1	0.973
NZ_MCHS01000029_1	1.2\|31909\|34\|NZ_MCHS01000029\|PILER-CR,CRT	31909-31942	34	MH341451	Listeria phage PSU-VKH-LP019, complete genome	5984-6017	2	0.941
NZ_MCHS01000029_1	1.2\|31909\|34\|NZ_MCHS01000029\|PILER-CR,CRT	31909-31942	34	KP399677	Listeria phage vB_LmoS_188, complete genome	5993-6026	2	0.941
NZ_MCHS01000029_1	1.4\|32037\|35\|NZ_MCHS01000029\|PILER-CR,CRT	32037-32071	35	NC_003216	Listeria phage A118, complete genome	20794-20828	2	0.943
NZ_MCHS01000029_1	1.4\|32037\|35\|NZ_MCHS01000029\|PILER-CR,CRT	32037-32071	35	AJ242593	Bacteriophage A118 complete genome	20794-20828	2	0.943
NZ_MCHS01000029_1	1.4\|32037\|35\|NZ_MCHS01000029\|PILER-CR,CRT	32037-32071	35	X85008	Bacteriophage A118 hol118 and ply118 genes	1042-1076	2	0.943
NZ_MCHS01000029_1	1.4\|32037\|35\|NZ_MCHS01000029\|PILER-CR,CRT	32037-32071	35	KJ094023	Listeria phage LP-101, complete genome	19818-19852	2	0.943
NZ_MCHS01000029_1	1.7\|31908\|35\|NZ_MCHS01000029\|CRISPRCasFinder	31908-31942	35	MH341451	Listeria phage PSU-VKH-LP019, complete genome	5984-6018	2	0.943
NZ_MCHS01000029_1	1.7\|31908\|35\|NZ_MCHS01000029\|CRISPRCasFinder	31908-31942	35	KP399677	Listeria phage vB_LmoS_188, complete genome	5993-6027	2	0.943
NZ_MCHS01000029_1	1.9\|32036\|36\|NZ_MCHS01000029\|CRISPRCasFinder	32036-32071	36	NC_003216	Listeria phage A118, complete genome	20793-20828	2	0.944
NZ_MCHS01000029_1	1.9\|32036\|36\|NZ_MCHS01000029\|CRISPRCasFinder	32036-32071	36	AJ242593	Bacteriophage A118 complete genome	20793-20828	2	0.944
NZ_MCHS01000029_1	1.9\|32036\|36\|NZ_MCHS01000029\|CRISPRCasFinder	32036-32071	36	X85008	Bacteriophage A118 hol118 and ply118 genes	1041-1076	2	0.944
NZ_MCHS01000029_1	1.9\|32036\|36\|NZ_MCHS01000029\|CRISPRCasFinder	32036-32071	36	KJ094023	Listeria phage LP-101, complete genome	19817-19852	2	0.944
NZ_MCHS01000029_2	2.6\|47712\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	47712-47747	36	KJ094023	Listeria phage LP-101, complete genome	27001-27036	2	0.944
NZ_MCHS01000029_2	2.11\|48037\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	48037-48072	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	26132-26167	2	0.944
NZ_MCHS01000029_2	2.17\|48422\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	48422-48457	36	KJ094022	Listeria phage LP-030-3, complete genome	38302-38337	2	0.944
NZ_MCHS01000029_2	2.19\|48552\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	48552-48587	36	KP399678	Listeria phage vB_LmoS_293, complete genome	1049-1084	2	0.944
NZ_MCHS01000029_2	2.29\|49203\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49203-49238	36	DQ003637	Listeria phage A500, complete genome	6959-6994	2	0.944
NZ_MCHS01000029_2	2.32\|49396\|37\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49396-49432	37	MN689509	Lactococcus phage CHPC1175, complete genome	29544-29580	2	0.946
NZ_MCHS01000029_2	2.32\|49396\|37\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49396-49432	37	MK448735	Streptococcus phage Javan349, complete genome	11483-11519	2	0.946
NZ_MCHS01000029_2	2.1\|47387\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	47387-47422	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	228347-228382	3	0.917
NZ_MCHS01000029_2	2.18\|48487\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	48487-48522	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	41996-42031	3	0.917
NZ_MCHS01000029_2	2.18\|48487\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	48487-48522	36	KJ094023	Listeria phage LP-101, complete genome	32760-32795	5	0.861
NZ_MCHS01000029_2	2.15\|48296\|34\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	48296-48329	34	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1764851-1764884	6	0.824
NZ_MCHS01000029_2	2.29\|49203\|36\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49203-49238	36	KJ094022	Listeria phage LP-030-3, complete genome	15373-15408	6	0.833
NZ_MCHS01000029_2	2.33\|49462\|35\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49462-49496	35	MN694189	Marine virus AFVG_250M578, complete genome	47879-47913	6	0.829
NZ_MCHS01000029_1	1.7\|31908\|35\|NZ_MCHS01000029\|CRISPRCasFinder	31908-31942	35	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	1102881-1102915	9	0.743
NZ_MCHS01000029_2	2.15\|48296\|34\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	48296-48329	34	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	39302-39335	9	0.735
NZ_MCHS01000029_2	2.20\|48617\|35\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	48617-48651	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	491525-491559	9	0.743
NZ_MCHS01000029_2	2.33\|49462\|35\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49462-49496	35	MK448625	Streptococcus satellite phage Javan738, complete genome	5960-5994	9	0.743
NZ_MCHS01000029_2	2.33\|49462\|35\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49462-49496	35	MK448449	Streptococcus satellite phage Javan356, complete genome	4490-4524	9	0.743
NZ_MCHS01000029_2	2.33\|49462\|35\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49462-49496	35	MK448636	Streptococcus satellite phage Javan749, complete genome	6112-6146	9	0.743
NZ_MCHS01000029_2	2.33\|49462\|35\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49462-49496	35	NZ_CP045037	Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence	34734-34768	9	0.743
NZ_MCHS01000029_2	2.33\|49462\|35\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49462-49496	35	NZ_CP018177	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence	11325-11359	9	0.743
NZ_MCHS01000029_2	2.33\|49462\|35\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49462-49496	35	NZ_CP018181	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence	63608-63642	9	0.743
NZ_MCHS01000029_1	1.2\|31909\|34\|NZ_MCHS01000029\|PILER-CR,CRT	31909-31942	34	MK044828	Streptococcus phage 33888, complete genome	5436-5469	10	0.706
NZ_MCHS01000029_2	2.30\|49268\|34\|NZ_MCHS01000029\|PILER-CR,CRISPRCasFinder,CRT	49268-49301	34	NZ_CP034816	Paracoccus sp. Arc7-R13 plasmid unnamed6, complete sequence	26153-26186	11	0.676

1. spacer 1.3|31973|34|NZ_MCHS01000029|PILER-CR,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

2. spacer 1.8|31972|35|NZ_MCHS01000029|CRISPRCasFinder matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

3. spacer 2.12|48102|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

4. spacer 2.12|48102|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

5. spacer 2.16|48359|34|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

6. spacer 2.16|48359|34|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

7. spacer 2.29|49203|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaaccacctcgatttc	Protospacer
************************************

8. spacer 1.2|31909|34|NZ_MCHS01000029|PILER-CR,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.971

ctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
ctgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
***************************.******

9. spacer 1.3|31973|34|NZ_MCHS01000029|PILER-CR,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.971

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
*******************************.**

10. spacer 1.3|31973|34|NZ_MCHS01000029|PILER-CR,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.971

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
*******************************.**

11. spacer 1.3|31973|34|NZ_MCHS01000029|PILER-CR,CRT matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 1, identity: 0.971

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
*******************************.**

12. spacer 1.4|32037|35|NZ_MCHS01000029|PILER-CR,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.971

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcggggatggggaaaacg	Protospacer
**********************************

13. spacer 1.7|31908|35|NZ_MCHS01000029|CRISPRCasFinder matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.971

tctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tctgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
****************************.******

14. spacer 1.8|31972|35|NZ_MCHS01000029|CRISPRCasFinder matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

15. spacer 1.8|31972|35|NZ_MCHS01000029|CRISPRCasFinder matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

16. spacer 1.8|31972|35|NZ_MCHS01000029|CRISPRCasFinder matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

17. spacer 1.9|32036|36|NZ_MCHS01000029|CRISPRCasFinder matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.972

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcggggatggggaaaacg	Protospacer
***********************************

18. spacer 2.6|47712|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 1, identity: 0.972

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgatttttcgtagcccaattgctaaa	Protospacer
************.***********************

19. spacer 2.6|47712|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.972

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgatttttcgtagcccaattgctaaa	Protospacer
************.***********************

20. spacer 2.29|49203|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctcgatttc	Protospacer
***********************.************

21. spacer 2.29|49203|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctcgatttc	Protospacer
***********************.************

22. spacer 2.29|49203|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcattaaaccacctcgatttc	Protospacer
*******************.****************

23. spacer 2.31|49331|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.972

acgtttgcggtagttttaccgggcacggtcaaatat	CRISPR spacer
acgttcgcggtagttttaccgggcacggtcaaatat	Protospacer
*****.******************************

24. spacer 2.31|49331|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 1, identity: 0.972

acgtttgcggtagttttaccgggcacggtcaaatat	CRISPR spacer
acgttcgcggtagttttaccgggcacggtcaaatat	Protospacer
*****.******************************

25. spacer 2.32|49396|37|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to KY705255 (Streptococcus phage P0095, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

26. spacer 2.32|49396|37|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to KY705251 (Streptococcus phage P0091, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

27. spacer 2.32|49396|37|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to KX879643 (Streptococcus phage CHPC1151, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

28. spacer 2.32|49396|37|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to MK202161 (Streptococcus phage CHPC1282, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

29. spacer 2.32|49396|37|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to KY705252 (Streptococcus phage P0092, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

30. spacer 2.32|49396|37|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to MH937506 (Streptococcus phage CHPC1148, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

31. spacer 2.32|49396|37|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to KY705253 (Streptococcus phage P0093, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

32. spacer 2.32|49396|37|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to KY705254 (Streptococcus phage P0094, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

33. spacer 1.2|31909|34|NZ_MCHS01000029|PILER-CR,CRT matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 2, identity: 0.941

ctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
ccgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
*.*************************.******

34. spacer 1.2|31909|34|NZ_MCHS01000029|PILER-CR,CRT matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 2, identity: 0.941

ctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
ccgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
*.*************************.******

35. spacer 1.4|32037|35|NZ_MCHS01000029|PILER-CR,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 2, identity: 0.943

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaacg	Protospacer
*******************.**************

36. spacer 1.4|32037|35|NZ_MCHS01000029|PILER-CR,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 2, identity: 0.943

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaacg	Protospacer
*******************.**************

37. spacer 1.4|32037|35|NZ_MCHS01000029|PILER-CR,CRT matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 2, identity: 0.943

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaacg	Protospacer
*******************.**************

38. spacer 1.4|32037|35|NZ_MCHS01000029|PILER-CR,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.943

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgattgcggggatggggaaaacg	Protospacer
***************** ****************

39. spacer 1.7|31908|35|NZ_MCHS01000029|CRISPRCasFinder matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 2, identity: 0.943

tctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tccgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
**.*************************.******

40. spacer 1.7|31908|35|NZ_MCHS01000029|CRISPRCasFinder matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 2, identity: 0.943

tctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tccgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
**.*************************.******

41. spacer 1.9|32036|36|NZ_MCHS01000029|CRISPRCasFinder matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaacg	Protospacer
********************.**************

42. spacer 1.9|32036|36|NZ_MCHS01000029|CRISPRCasFinder matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaacg	Protospacer
********************.**************

43. spacer 1.9|32036|36|NZ_MCHS01000029|CRISPRCasFinder matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaacg	Protospacer
********************.**************

44. spacer 1.9|32036|36|NZ_MCHS01000029|CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgattgcggggatggggaaaacg	Protospacer
****************** ****************

45. spacer 2.6|47712|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.944

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgattttttgtagcccaattgctaaa	Protospacer
************.*****.*****************

46. spacer 2.11|48037|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 2, identity: 0.944

gtccacatcgacaataaaaaacacattgtatcactt	CRISPR spacer
gtccacattgacaacaaaaaacacattgtatcactt	Protospacer
********.*****.*********************

47. spacer 2.17|48422|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.944

ttgttcgacggcttagacaaccatcacgcttcttta	CRISPR spacer
cttttcgacggcttagacaaccatcacgcttcttta	Protospacer
.* *********************************

48. spacer 2.19|48552|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 2, identity: 0.944

ctcataaggatttcgaggcgggttaaacgacatgta	CRISPR spacer
ctcataaggattgcgaggcgggttaaatgacatgta	Protospacer
************ **************.********

49. spacer 2.29|49203|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 2, identity: 0.944

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctctatttc	Protospacer
***********************.****** *****

50. spacer 2.32|49396|37|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to MN689509 (Lactococcus phage CHPC1175, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaaccgagaacgtgtgttcattatcggacatctta	Protospacer
****** *******.**********************

51. spacer 2.32|49396|37|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to MK448735 (Streptococcus phage Javan349, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgggtgttcattgtcggacatctta	Protospacer
************** *********.************

52. spacer 2.1|47387|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 3, identity: 0.917

aaagaccttcgatttcattctcactttccagttaat	CRISPR spacer
gaaaaccttcgatttcattcttactttccagttaat	Protospacer
.**.*****************.**************

53. spacer 2.18|48487|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 3, identity: 0.917

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
tataaaatattgtccaatgtgtggaaggagtttggg	Protospacer
************.********.*************.

54. spacer 2.18|48487|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 5, identity: 0.861

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
cattgaattttgcccaatgtgcggaaggagcttgga	Protospacer
.** .*** *********************.*****

55. spacer 2.15|48296|34|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.824

agaaaaaaaacatctttccaatttgttgttttgc	CRISPR spacer
agcaaaaaaacatctttcctatttgttttatcac	Protospacer
** **************** ******* * *..*

56. spacer 2.29|49203|36|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 6, identity: 0.833

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
tattaactttaatcggcatcaaaccacctctatctc	Protospacer
.*.  ************************* **.**

57. spacer 2.33|49462|35|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 6, identity: 0.829

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
taataaaaaatgagggcttagaaaatgaaaaaatt	Protospacer
*  *.*** ******.***************** *

58. spacer 1.7|31908|35|NZ_MCHS01000029|CRISPRCasFinder matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 9, identity: 0.743

tctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tccgtaaaatcaaaagtatcatcgattttatgata	Protospacer
**.******************* **  . **  *

59. spacer 2.15|48296|34|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

agaaaaaaaacatctttccaatttgttgttttgc-----	CRISPR spacer
aagaaaaaaacatatttccaatt-----ttttccaaaaa	Protospacer
*..********** *********     **** *

60. spacer 2.20|48617|35|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 9, identity: 0.743

gcttttttcaacaattttatcaccagatgtcatta	CRISPR spacer
agttttttcaacaattttatgaacagataattttt	Protospacer
. ****************** * *****. . **

61. spacer 2.33|49462|35|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to MK448625 (Streptococcus satellite phage Javan738, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

62. spacer 2.33|49462|35|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

63. spacer 2.33|49462|35|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtctgaactatgaggacttagaaagtgaagacctg	Protospacer
 *.**** ****************.****.*

64. spacer 2.33|49462|35|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

65. spacer 2.33|49462|35|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

66. spacer 2.33|49462|35|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

67. spacer 1.2|31909|34|NZ_MCHS01000029|PILER-CR,CRT matches to MK044828 (Streptococcus phage 33888, complete genome) position: , mismatch: 10, identity: 0.706

ctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tgggaaaatcaaaagtatcaaagtaacagatgta	Protospacer
. * **************** ** ****. . *

68. spacer 2.30|49268|34|NZ_MCHS01000029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034816 (Paracoccus sp. Arc7-R13 plasmid unnamed6, complete sequence) position: , mismatch: 11, identity: 0.676

caagatatgctagaaatggcgcaaatagcgcgcg	CRISPR spacer
gtccggctgcttgaaatggcgcagatagcgcgtc	Protospacer
    .  **** ***********.********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

174734 : 204274

Listeria_phage(44.83%)

integrase,tail,terminase,capsid,head,protease,portal

attL 178922:178936|attR 193278:193292

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023552234.1\|174734_175886_-\|integrase	site-specific integrase	A8ATX2	Listeria_phage	3.4e-87	46.3
WP_023552237.1\|175907_176621_-	hypothetical protein	A0A0B5CTT6	Listeria_phage	1.1e-35	36.1
WP_014930667.1\|176675_177176_-	hypothetical protein	A0A1S7FYX8	Listeria_phage	1.9e-13	31.9
WP_012951299.1\|177188_177515_-	helix-turn-helix transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	2.5e-11	35.1
WP_023552239.1\|177688_177880_+	helix-turn-helix transcriptional regulator	Q0H243	Geobacillus_phage	4.7e-10	57.6
WP_012951301.1\|177977_178304_+	DUF771 domain-containing protein	A0A2H4J474	uncultured_Caudovirales_phage	4.9e-15	41.1
WP_023552243.1\|178476_179391_+	conserved phage C-terminal domain-containing protein	A0A1W6JNI1	Staphylococcus_phage	7.8e-58	51.5
178922:178936	attL	NA	NA	NA	NA
WP_023552245.1\|179392_179749_+	hypothetical protein	NA	NA	NA	NA
WP_085299706.1\|179745_180162_+	hypothetical protein	NA	NA	NA	NA
WP_023552249.1\|180158_180335_+	hypothetical protein	A8ATL8	Listeria_phage	1.7e-14	70.7
WP_023552251.1\|180349_181069_+	DUF2786 domain-containing protein	A0A1U9WR73	Streptococcus_virus	3.5e-21	29.7
WP_023552253.1\|181072_181375_+	hypothetical protein	A0A059T695	Listeria_phage	3.8e-22	96.2
WP_031694732.1\|181371_181773_+	hypothetical protein	A8ASP1	Listeria_phage	6.0e-39	58.2
WP_031694733.1\|181769_182255_+	pentapeptide repeat-containing protein	A0A059T6G6	Listeria_phage	2.0e-44	93.2
WP_023552261.1\|182251_182713_+	hypothetical protein	A0A0C5K8Z3	Enterococcus_phage	2.0e-09	34.2
WP_023552263.1\|182709_183093_+	hypothetical protein	A8ATZ3	Listeria_phage	5.4e-45	77.2
WP_023552266.1\|183113_183362_+	DUF3850 domain-containing protein	A0A059T7N3	Listeria_phage	5.0e-28	84.0
WP_023552268.1\|183361_183943_+	DUF3310 domain-containing protein	A0A059T5J6	Listeria_phage	2.3e-76	76.3
WP_031694734.1\|183942_184422_+	single-stranded DNA-binding protein	A8ASP5	Listeria_phage	2.3e-69	83.8
WP_023552274.1\|184442_184682_+	hypothetical protein	NA	NA	NA	NA
WP_031694735.1\|184672_184858_+	hypothetical protein	NA	NA	NA	NA
WP_023552279.1\|184928_185447_+	hypothetical protein	NA	NA	NA	NA
WP_023552281.1\|185443_185986_+\|integrase	tyrosine-type recombinase/integrase	H0USV4	Bacillus_phage	2.5e-48	53.3
WP_126290679.1\|186101_186335_+	hypothetical protein	NA	NA	NA	NA
WP_031694737.1\|186605_186932_+	hypothetical protein	NA	NA	NA	NA
WP_049961622.1\|186928_187288_+	HNH endonuclease	A0A075M5R4	Enterococcus_phage	5.4e-15	46.2
WP_012951321.1\|187386_187914_+\|terminase	phage terminase small subunit P27 family	J7KC46	Streptococcus_phage	6.1e-31	46.7
WP_012951322.1\|187882_189634_+\|terminase	terminase large subunit	A0A2H4JCI4	uncultured_Caudovirales_phage	4.1e-156	50.7
WP_023552290.1\|189640_189841_+	DUF1056 family protein	NA	NA	NA	NA
WP_012951323.1\|189843_191079_+\|portal	phage portal protein	A0A2H4JAR2	uncultured_Caudovirales_phage	3.6e-82	42.1
WP_012951324.1\|191075_191642_+\|head,protease	HK97 family phage prohead protease	A0A1D6Z2A7	Staphylococcus_phage	1.0e-44	52.2
WP_012951325.1\|191705_192875_+\|capsid	phage major capsid protein	A0A060AI54	Enterococcus_phage	2.1e-44	38.1
WP_012951326.1\|192923_193262_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_012951327.1\|193231_193552_+\|head	phage head closure protein	NA	NA	NA	NA
193278:193292	attR	NA	NA	NA	NA
WP_012951328.1\|193545_193911_+	HK97 gp10 family phage protein	B4XYP9	Lactobacillus_phage	2.4e-10	37.4
WP_014930680.1\|193913_194312_+	hypothetical protein	NA	NA	NA	NA
WP_012951330.1\|194332_194908_+\|tail	major tail protein	M1PRQ7	Streptococcus_phage	1.2e-32	42.4
WP_012951331.1\|194997_195345_+	hypothetical protein	NA	NA	NA	NA
WP_014930682.1\|195541_199741_+\|tail	phage tail tape measure protein	J7KDT4	Streptococcus_phage	1.2e-12	33.0
WP_014930683.1\|199733_201977_+\|tail	phage tail family protein	A0A059T682	Listeria_phage	1.2e-56	29.4
WP_031694739.1\|201982_204274_+\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	4.4e-134	37.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_MCHS01000017

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

443 : 3741

Listeria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003730995.1\|443_635_+	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	5.4e-22	87.1
WP_003730996.1\|656_899_+	hypothetical protein	A8ATD2	Listeria_phage	3.9e-41	93.8
WP_003730997.1\|901_1087_+	hypothetical protein	A8ATD3	Listeria_phage	3.7e-28	98.4
WP_012951522.1\|1824_2067_+	hypothetical protein	NA	NA	NA	NA
WP_003731843.1\|2352_2568_+	hypothetical protein	NA	NA	NA	NA
WP_031694757.1\|2645_3221_+	DUF1642 domain-containing protein	A8ATD8	Listeria_phage	2.2e-26	41.8
WP_003731819.1\|3217_3484_+	hypothetical protein	R4IBL5	Listeria_phage	1.9e-33	84.9
WP_003747322.1\|3480_3741_+	DUF3850 domain-containing protein	A0A059T7N3	Listeria_phage	3.1e-20	65.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_MCHS01000033

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 3546

Listeria_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172119393.1\|0_293_-	AAA family ATPase	R4IDY8	Listeria_phage	1.2e-47	94.8
WP_039153573.1\|305_785_-	siphovirus Gp157 family protein	R4IBM0	Listeria_phage	1.9e-76	97.5
WP_015987318.1\|786_1170_-	hypothetical protein	A8ATE8	Listeria_phage	2.5e-66	100.0
WP_015987316.1\|1166_1340_-	hypothetical protein	A8ATE7	Listeria_phage	3.1e-24	100.0
WP_031669126.1\|1336_1759_-	hypothetical protein	Q8W5W4	Listeria_phage	1.5e-69	95.0
WP_141029210.1\|1972_2251_-	DUF1642 domain-containing protein	R4IBV9	Listeria_phage	4.2e-23	65.9
WP_009912778.1\|2408_2924_-	hypothetical protein	C9E2P0	Enterococcus_phage	1.8e-32	45.5
WP_031669967.1\|2982_3546_-	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	2.4e-33	42.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_MCHS01000032

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 3542

Listeria_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172119393.1\|0_293_-	AAA family ATPase	R4IDY8	Listeria_phage	1.2e-47	94.8
WP_039153573.1\|305_785_-	siphovirus Gp157 family protein	R4IBM0	Listeria_phage	1.9e-76	97.5
WP_009911360.1\|788_1166_-	hypothetical protein	Q8W5W2	Listeria_phage	5.1e-40	66.9
WP_003731667.1\|1162_1336_-	hypothetical protein	Q8W5W3	Listeria_phage	6.8e-24	100.0
WP_031669126.1\|1332_1755_-	hypothetical protein	Q8W5W4	Listeria_phage	1.5e-69	95.0
WP_141029210.1\|1968_2247_-	DUF1642 domain-containing protein	R4IBV9	Listeria_phage	4.2e-23	65.9
WP_009912778.1\|2404_2920_-	hypothetical protein	C9E2P0	Enterococcus_phage	1.8e-32	45.5
WP_031669967.1\|2978_3542_-	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	2.4e-33	42.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_MCHS01000006

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

449516 : 456939

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721506.1\|449516_449900_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
WP_015454559.1\|449921_450905_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.1e-12	34.6
WP_014930875.1\|450919_451933_+	glycosyltransferase	A0A1V0SAH6	Catovirus	6.0e-11	32.0
WP_003721509.1\|452141_453632_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_015454563.1\|453643_454468_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	3.3e-68	52.9
WP_031669482.1\|454480_454789_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_031669483.1\|454849_455254_+	PTS lactose transporter subunit IIBC	NA	NA	NA	NA
WP_020246560.1\|455382_456939_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.3e-17	28.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_MCHS01000009

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

43597 : 52587

Cronobacter_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728507.1\|43597_45712_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	3.4e-117	39.1
WP_003728509.1\|46139_46376_-	helix-turn-helix transcriptional regulator	A0A097PBE6	Streptococcus_pyogenes_phage	6.7e-14	53.4
WP_003731679.1\|46338_46617_+	hypothetical protein	NA	NA	NA	NA
WP_003728510.1\|46736_46964_-	hypothetical protein	NA	NA	NA	NA
WP_003728511.1\|46953_47562_-	recombinase family protein	A0A1W5LU24	Ralstonia_phage	1.0e-21	42.9
WP_096832442.1\|47775_49953_-	ATP-binding protein	A0A1B1IUG5	uncultured_Mediterranean_phage	1.2e-19	25.0
WP_031669356.1\|50555_51044_-	hypothetical protein	NA	NA	NA	NA
WP_003769263.1\|51202_51580_-	DUF3850 domain-containing protein	C9E2N9	Enterococcus_phage	2.2e-14	55.1
WP_003731676.1\|51598_52261_-	DUF2786 domain-containing protein	NA	NA	NA	NA
WP_031641563.1\|52260_52587_-	hypothetical protein	A0A2K9V3N4	Faecalibacterium_phage	3.2e-06	40.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_MCHS01000015

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr_ID: NZ_MCHS01000015.1|WP_003731276.1|557_809_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_MCHS01000015.1|WP_003731276.1|557_809_+|hypothetical-protein

557_809_+

83 aa aa

AcrIIA12

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3641\|WP_003731276.1\|AcrIIA12\|II-A\|Verified\|Listeria-monocytogenes	1.0	1	1.0

8. NZ_MCHS01000023

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 11379

Listeria_phage(100.0%)

head,capsid,portal,terminase,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141029209.1\|0_183_+	VRR-NUC domain-containing protein	A8ATF4	Listeria_phage	6.9e-27	100.0
WP_085299671.1\|295_826_+	DUF3310 domain-containing protein	A8ATF5	Listeria_phage	1.9e-72	76.0
WP_003747244.1\|1020_1446_+	DUF722 domain-containing protein	A8ATF6	Listeria_phage	2.2e-71	97.2
WP_031669127.1\|1539_2283_+	DUF559 domain-containing protein	NA	NA	NA	NA
WP_026749920.1\|2742_3069_+	hypothetical protein	A0A059T5G5	Listeria_phage	8.3e-55	98.1
WP_009928009.1\|3068_3383_+	HNH endonuclease	A8ATF8	Listeria_phage	3.8e-57	99.0
WP_025981612.1\|3431_3788_+\|terminase	P27 family phage terminase small subunit	A8AT94	Listeria_phage	1.3e-45	98.0
WP_085299673.1\|3784_5428_+\|terminase	terminase large subunit	A0A059T7Q8	Listeria_phage	0.0e+00	98.9
WP_085299675.1\|5439_6570_+\|portal	phage portal protein	A0A059T6F0	Listeria_phage	8.9e-213	98.1
WP_045552976.1\|6566_7364_+\|protease	Clp protease ClpP	A0A059T5F2	Listeria_phage	4.3e-137	95.5
WP_061107418.1\|7390_8542_+\|capsid	phage major capsid protein	A8AT98	Listeria_phage	2.7e-201	93.0
WP_023548922.1\|8548_8719_+	hypothetical protein	A8AT99	Listeria_phage	6.9e-21	94.6
WP_003731645.1\|8728_9028_+	hypothetical protein	A8ATA0	Listeria_phage	5.3e-48	100.0
WP_069027864.1\|9011_9377_+\|head,tail	phage head-tail adapter protein	A8ATA1	Listeria_phage	2.4e-63	98.3
WP_012951550.1\|9373_9775_+	hypothetical protein	A0A059T5F3	Listeria_phage	2.1e-68	100.0
WP_009931623.1\|9771_10155_+	hypothetical protein	A0A059T681	Listeria_phage	6.1e-65	96.1
WP_009931624.1\|10175_10763_+\|tail	phage tail protein	A0A059T7Y4	Listeria_phage	4.0e-108	100.0
WP_009917698.1\|10834_11167_+	hypothetical protein	A8ATA5	Listeria_phage	1.8e-52	99.1
WP_009931626.1\|11217_11379_+	hypothetical protein	A0A059T6F4	Listeria_phage	4.3e-20	98.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

9. NZ_MCHS01000031

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

10. NZ_MCHS01000012

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

19295 : 78777

Bacillus_virus(15.79%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003723562.1\|19295_20435_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003723563.1\|20515_20911_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|21061_21277_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003732794.1\|21394_21928_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003732795.1\|21945_22611_+	hypothetical protein	NA	NA	NA	NA
WP_003732796.1\|22872_23811_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|23925_25209_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|25394_26654_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_003723887.1\|26772_27339_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_003723888.1\|27373_27943_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003723889.1\|28044_28587_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003723890.1\|28596_29460_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003723891.1\|29456_30242_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	3.0e-26	39.2
WP_003723892.1\|30375_31236_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	1.2e-39	43.2
WP_003732799.1\|31506_33585_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	3.2e-107	37.5
WP_015454658.1\|33647_34952_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_003724000.1\|35234_36137_+	tyrosine recombinase XerC	A0A1B1IQT7	uncultured_Mediterranean_phage	8.0e-23	28.0
WP_003724001.1\|36157_36697_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_003732800.1\|36710_38120_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IBU3	Erwinia_phage	6.8e-29	25.6
WP_003726695.1\|38140_38920_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_003724129.1\|39022_39442_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003724130.1\|39463_39775_+	hypothetical protein	NA	NA	NA	NA
WP_003724131.1\|39777_40650_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003724132.1\|40691_41288_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003732802.1\|41445_41853_+	CoA-binding protein	NA	NA	NA	NA
WP_003723731.1\|42033_44001_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	6.7e-123	42.5
WP_003723732.1\|43997_46457_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	1.1e-101	31.6
WP_003723733.1\|46539_47007_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_031668943.1\|47336_49106_+	lmo1289 family class 1 internalin	NA	NA	NA	NA
WP_031668945.1\|49437_51240_+	class 1 internalin InlK	NA	NA	NA	NA
WP_003723736.1\|51273_53142_-	peptidoglycan O-acetyltransferase OatA	B5WZU0	Pseudomonas_phage	6.5e-43	31.9
WP_003723737.1\|53354_54053_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	1.3e-12	32.4
WP_003723738.1\|54285_55962_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_012951578.1\|56087_57005_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003719566.1\|57127_57361_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_003733804.1\|57471_58695_+	GTPase HflX	NA	NA	NA	NA
WP_010989728.1\|58687_59914_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_003719570.1\|60116_60485_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003723435.1\|60555_61890_+	type I glutamate--ammonia ligase	M1NM71	Moumouvirus	4.2e-12	23.8
WP_003723436.1\|62033_63329_+	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	1.8e-145	61.6
WP_003723437.1\|63372_63894_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003723438.1\|63923_64538_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	9.3e-15	62.1
WP_003723439.1\|64694_65024_+	cell division suppressor protein YneA	NA	NA	NA	NA
WP_014601966.1\|65115_65343_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_014601967.1\|65489_67484_+	transketolase	NA	NA	NA	NA
WP_003723442.1\|67704_67944_+	YneF family protein	NA	NA	NA	NA
WP_003723443.1\|67994_68837_-	DUF2785 domain-containing protein	NA	NA	NA	NA
WP_003723444.1\|68855_69587_-	methyltransferase domain-containing protein	A0A1X9I6N4	Streptococcus_phage	1.2e-80	59.1
WP_003723445.1\|69608_70115_-	ParB-like nuclease domain-containing protein	A0A220GKT8	Streptococcus_phage	4.0e-56	66.7
WP_003723446.1\|70124_71429_-	DUF3440 domain-containing protein	A0A220GKF8	Streptococcus_phage	9.5e-134	52.1
WP_072217143.1\|71418_72624_-	helicase SNF2	L0P6E9	Lactobacillus_phage	3.7e-92	47.1
WP_003723448.1\|72601_72976_-	hypothetical protein	NA	NA	NA	NA
WP_003723449.1\|73268_73997_+	UMP kinase	NA	NA	NA	NA
WP_003723450.1\|73996_74554_+	ribosome recycling factor	NA	NA	NA	NA
WP_003723451.1\|74783_75542_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	1.1e-22	41.4
WP_003723452.1\|75555_76344_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_003723453.1\|76358_77501_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_003723454.1\|77514_78777_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

11. NZ_MCHS01000039

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

97557 : 100488

Listeria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722598.1\|97557_97893_+	membrane protein	S5MNN8	Brevibacillus_phage	6.0e-16	76.6
WP_003731279.1\|98144_98348_-	hypothetical protein	A8ATX1	Listeria_phage	2.7e-32	100.0
WP_009924650.1\|98344_98578_-	hypothetical protein	A8ATX0	Listeria_phage	3.3e-37	100.0
WP_009924649.1\|98877_99111_+	hypothetical protein	A8ATW9	Listeria_phage	9.2e-08	48.1
WP_003722517.1\|99139_99511_+	anti-CRISPR protein AcrIIA2	A0A059T5F6	Listeria_phage	5.3e-58	92.7
WP_031669445.1\|99516_99966_+	anti-CRISPR protein AcrIIA1	A8ATW7	Listeria_phage	6.9e-76	99.3
WP_009926666.1\|99990_100488_+	AP2 domain-containing protein	A8ATW6	Listeria_phage	1.8e-88	97.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

12. NZ_MCHS01000019

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

205 : 7165

Listeria_phage(100.0%)

integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003747322.1\|205_466_-	DUF3850 domain-containing protein	A0A059T7N3	Listeria_phage	3.1e-20	65.3
WP_003731819.1\|462_729_-	hypothetical protein	R4IBL5	Listeria_phage	1.9e-33	84.9
WP_031694757.1\|725_1301_-	DUF1642 domain-containing protein	A8ATD8	Listeria_phage	2.2e-26	41.8
WP_003731843.1\|1378_1594_-	hypothetical protein	NA	NA	NA	NA
WP_012951522.1\|1879_2122_-	hypothetical protein	NA	NA	NA	NA
WP_003730997.1\|2859_3045_-	hypothetical protein	A8ATD3	Listeria_phage	3.7e-28	98.4
WP_003730996.1\|3047_3290_-	hypothetical protein	A8ATD2	Listeria_phage	3.9e-41	93.8
WP_003730995.1\|3311_3503_-	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	5.4e-22	87.1
WP_045553345.1\|3569_3776_+	hypothetical protein	NA	NA	NA	NA
WP_160336567.1\|3759_3903_-	hypothetical protein	NA	NA	NA	NA
WP_012951519.1\|4173_4497_+	helix-turn-helix transcriptional regulator	R4IDX0	Listeria_phage	6.3e-39	75.7
WP_026747145.1\|4513_4966_+	ImmA/IrrE family metallo-endopeptidase	R4IBK9	Listeria_phage	9.1e-76	87.3
WP_014930257.1\|5017_5881_+	hypothetical protein	NA	NA	NA	NA
WP_031660124.1\|6010_7165_+\|integrase	site-specific integrase	A0A059T688	Listeria_phage	1.1e-207	94.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

13. NZ_MCHS01000034

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

490005 : 516667

Listeria_phage(91.18%)

holin,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061107114.1\|490005_490239_-	hypothetical protein	R4IDW6	Listeria_phage	1.4e-35	96.1
WP_061107115.1\|490752_491016_+	AcrIIA4 family anti-CRISPR protein	A0A2D0TCG7	unidentified_phage	4.2e-33	85.1
WP_061107116.1\|491019_491469_+	anti-CRISPR protein AcrIIA1	Q9T196	Listeria_phage	1.4e-68	89.9
WP_014930928.1\|491536_492109_+	hypothetical protein	A0A059T7R6	Listeria_phage	9.0e-97	93.7
WP_031667948.1\|492262_492562_-	STAS-like domain-containing protein	J7KJ12	Streptococcus_phage	1.4e-11	42.7
WP_049955959.1\|492555_493458_-	ATP-binding protein	J7KDG8	Streptococcus_phage	1.5e-37	33.1
WP_061107117.1\|493614_494463_-	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	1.2e-137	90.3
WP_039154101.1\|494462_494729_-\|holin	phage holin	A0A059T684	Listeria_phage	1.1e-36	87.5
WP_031659993.1\|494728_495037_-	hypothetical protein	A0A059T5E6	Listeria_phage	3.9e-38	88.9
WP_039154103.1\|495088_497251_-\|tail	phage tail protein	A8ATW1	Listeria_phage	0.0e+00	98.8
WP_039154105.1\|497263_498832_-\|tail	phage tail family protein	A8ATW0	Listeria_phage	2.9e-302	99.0
WP_039154108.1\|498828_503628_-\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	85.7
WP_039154112.1\|503632_503908_-	hypothetical protein	A0A0B5D116	Listeria_phage	8.9e-42	96.7
WP_039154114.1\|503940_504372_-	hypothetical protein	A8ATV7	Listeria_phage	2.4e-70	95.8
WP_039154117.1\|504427_505117_-	Ig domain-containing protein	A0A0B5CYK8	Listeria_phage	4.9e-97	84.3
WP_003745007.1\|505121_505493_-	hypothetical protein	A0A0B5CTY4	Listeria_phage	1.1e-63	100.0
WP_039154123.1\|505489_505807_-	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	1.9e-51	98.1
WP_026747241.1\|505796_506162_-	hypothetical protein	A8ATV3	Listeria_phage	3.3e-60	90.1
WP_039154131.1\|506161_506515_-	hypothetical protein	A8ATV2	Listeria_phage	1.1e-60	98.3
WP_003723786.1\|506515_506671_-	hypothetical protein	A0A0B5CYK6	Listeria_phage	1.0e-18	98.0
WP_003723787.1\|506684_507557_-	hypothetical protein	A0A0B5CTX8	Listeria_phage	2.3e-152	93.8
WP_039154134.1\|507579_508134_-	hypothetical protein	A8ATU9	Listeria_phage	5.1e-89	99.5
WP_015987421.1\|508229_509270_-	hypothetical protein	A8ATU8	Listeria_phage	1.6e-200	100.0
WP_015987416.1\|509274_510831_-	hypothetical protein	A8ATU7	Listeria_phage	4.8e-302	100.0
WP_047933366.1\|510845_512192_-\|terminase	PBSX family phage terminase large subunit	A8ATU6	Listeria_phage	5.9e-264	99.5
WP_039154140.1\|512157_512898_-	hypothetical protein	A8ATU5	Listeria_phage	3.1e-134	99.2
WP_003725074.1\|512937_513165_-	hypothetical protein	A0A0B5CTV3	Listeria_phage	1.8e-32	94.7
WP_039154144.1\|513425_513998_-	sigma-70 family RNA polymerase sigma factor	A0A0B5D145	Listeria_phage	3.3e-99	96.8
WP_003734975.1\|514085_514241_-	DUF3954 domain-containing protein	A0A0B5D0E9	Listeria_phage	1.1e-22	98.0
WP_003734977.1\|514385_514790_-	endodeoxyribonuclease	A8AU00	Listeria_phage	3.5e-71	97.8
WP_107176695.1\|514755_514896_-	BH0509 family protein	A8ATZ9	Listeria_phage	2.1e-15	91.3
WP_039154147.1\|514892_515198_-	hypothetical protein	A8ATZ8	Listeria_phage	2.5e-37	82.2
WP_031669403.1\|515229_515712_-	single-stranded DNA-binding protein	A0A059T5E0	Listeria_phage	2.0e-57	71.2
WP_031669401.1\|516265_516667_-	hypothetical protein	R4ICD6	Listeria_phage	1.8e-30	52.9

Anti-CRISPR protein detection

Acr_ID: NZ_MCHS01000034.1|WP_061107115.1|490752_491016_+|AcrIIA4-family-anti-CRISPR-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_MCHS01000034.1|WP_061107115.1|490752_491016_+|AcrIIA4-family-anti-CRISPR-protein

490752_491016_+

87 aa aa

AcrIIA4

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR0384\|AEO04689.1\|AcrIIA4\|II-A\|Verified\|Listeria-monocytogenes-J0161	0.8505747126436781	1	1.0

490005-516667

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_MCHS01000029_1	Unclear	1.3\|31973\|34\|NZ_MCHS01000029\|PILER-CR,CRT	31973-32006	34	494235-494268	2
NZ_MCHS01000029_1	Unclear	1.8\|31972\|35\|NZ_MCHS01000029\|CRISPRCasFinder	31972-32006	35	494234-494268	2
NZ_MCHS01000037_1	TypeII	1.11\|7760\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7760-7789	30	497547-497576	1
NZ_MCHS01000037_1	TypeII	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	492251-492222	1

1. spacer 1.3|31973|34|NZ_MCHS01000029|PILER-CR,CRT matches to NZ_MCHS01000034 position: 494235-494268, mismatch: 2

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccattacgaaatctagtgcttgtcctactaa	Protospacer
******* ***********.**************

2. spacer 1.8|31972|35|NZ_MCHS01000029|CRISPRCasFinder matches to NZ_MCHS01000034 position: 494234-494268, mismatch: 2

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccattacgaaatctagtgcttgtcctactaa	Protospacer
******** ***********.**************

3. spacer 1.11|7760|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MCHS01000034 position: 497547-497576, mismatch: 1

gatgccgcagcatatatatttaattgagct	CRISPR spacer
gatgccgcagcgtatatatttaattgagct	Protospacer
***********.******************

4. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MCHS01000034 position: 492251-492222, mismatch: 1

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacctcaccgttagggctttttttatgcaa	Protospacer
******* **********************

14. NZ_MCHS01000002

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

35520 : 53588

Listeria_phage(30.77%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003732216.1\|35520_37302_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.7e-53	30.8
WP_015455446.1\|37294_39037_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.3e-55	30.1
WP_010989345.1\|39179_40013_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_015453948.1\|40048_41164_+	alpha/beta hydrolase	M1PGN2	Moumouvirus	1.5e-18	26.8
WP_072217181.1\|41270_41978_+	EAL domain-containing protein	NA	NA	NA	NA
WP_003732218.1\|41947_42643_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_003721739.1\|42861_43314_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|43319_43655_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003732219.1\|43871_44300_+	hypothetical protein	A8ATZ8	Listeria_phage	3.0e-12	45.7
WP_031669175.1\|44311_44728_+	hypothetical protein	NA	NA	NA	NA
WP_003733902.1\|45005_45395_+	DUF5072 family protein	NA	NA	NA	NA
WP_003721744.1\|45407_45920_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003721745.1\|45967_46270_+	hypothetical protein	NA	NA	NA	NA
WP_072217178.1\|46311_46716_+	phenylalanine racemase	A0A097PAX1	Streptococcus_pyogenes_phage	2.4e-19	43.5
WP_031669176.1\|46702_48571_+	membrane protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_031669177.1\|48567_49386_+\|tail	phage tail family protein	Q9T1A6	Listeria_phage	5.7e-44	35.5
WP_085299638.1\|49395_50532_+\|tail	phage tail protein	A0A0B5D0G3	Listeria_phage	3.8e-46	33.5
WP_015453957.1\|50521_50821_+	hypothetical protein	NA	NA	NA	NA
WP_003721752.1\|50835_51411_+	hypothetical protein	NA	NA	NA	NA
WP_003721753.1\|51425_51905_+	hypothetical protein	NA	NA	NA	NA
WP_003721754.1\|51901_52438_+	hypothetical protein	NA	NA	NA	NA
WP_031669178.1\|52456_52879_+\|holin	holin family protein	Q2I8E7	Bacillus_phage	1.5e-27	46.3
WP_009924934.1\|52859_53588_+	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGH1	Paenibacillus_phage	4.3e-35	42.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

15. NZ_MCHS01000024

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 11379

Listeria_phage(100.0%)

tail,protease,portal,terminase,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141029209.1\|0_183_+	VRR-NUC domain-containing protein	A8ATF4	Listeria_phage	6.9e-27	100.0
WP_085299671.1\|295_826_+	DUF3310 domain-containing protein	A8ATF5	Listeria_phage	1.9e-72	76.0
WP_003747244.1\|1020_1446_+	DUF722 domain-containing protein	A8ATF6	Listeria_phage	2.2e-71	97.2
WP_031669127.1\|1539_2283_+	DUF559 domain-containing protein	NA	NA	NA	NA
WP_026749920.1\|2742_3069_+	hypothetical protein	A0A059T5G5	Listeria_phage	8.3e-55	98.1
WP_009928009.1\|3068_3383_+	HNH endonuclease	A8ATF8	Listeria_phage	3.8e-57	99.0
WP_025981612.1\|3431_3788_+\|terminase	P27 family phage terminase small subunit	A8AT94	Listeria_phage	1.3e-45	98.0
WP_085299673.1\|3784_5428_+\|terminase	terminase large subunit	A0A059T7Q8	Listeria_phage	0.0e+00	98.9
WP_085299675.1\|5439_6570_+\|portal	phage portal protein	A0A059T6F0	Listeria_phage	8.9e-213	98.1
WP_045552976.1\|6566_7364_+\|protease	Clp protease ClpP	A0A059T5F2	Listeria_phage	4.3e-137	95.5
WP_061107418.1\|7390_8542_+\|capsid	phage major capsid protein	A8AT98	Listeria_phage	2.7e-201	93.0
WP_023548922.1\|8548_8719_+	hypothetical protein	A8AT99	Listeria_phage	6.9e-21	94.6
WP_003731645.1\|8728_9028_+	hypothetical protein	A8ATA0	Listeria_phage	5.3e-48	100.0
WP_085299677.1\|9011_9377_+\|head,tail	phage head-tail adapter protein	A8ATA1	Listeria_phage	3.5e-62	95.9
WP_012951550.1\|9373_9775_+	hypothetical protein	A0A059T5F3	Listeria_phage	2.1e-68	100.0
WP_009931623.1\|9771_10155_+	hypothetical protein	A0A059T681	Listeria_phage	6.1e-65	96.1
WP_009931624.1\|10175_10763_+\|tail	phage tail protein	A0A059T7Y4	Listeria_phage	4.0e-108	100.0
WP_009917698.1\|10834_11167_+	hypothetical protein	A8ATA5	Listeria_phage	1.8e-52	99.1
WP_009931626.1\|11217_11379_+	hypothetical protein	A0A059T6F4	Listeria_phage	4.3e-20	98.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

16. NZ_MCHS01000021

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

89897 : 98183

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722243.1\|89897_90464_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9
WP_003733242.1\|90460_91510_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	4.6e-62	43.5
WP_003722245.1\|91528_92956_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_031669014.1\|92940_95160_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.5e-160	41.4
WP_003722247.1\|95152_95836_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_015454911.1\|95839_96085_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_014931516.1\|96096_96810_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	8.8e-41	37.8
WP_003733238.1\|96890_98183_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.2e-17	32.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

17. NZ_MCHS01000028

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1100 : 11978

Listeria_phage(100.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031669134.1\|1100_3395_-\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	0.0e+00	98.3
WP_023553822.1\|3407_5057_-\|tail	phage tail family protein	A0A059T682	Listeria_phage	0.0e+00	99.6
WP_085299702.1\|5049_9969_-\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	89.6
WP_009931626.1\|9972_10134_-	hypothetical protein	A0A059T6F4	Listeria_phage	4.3e-20	98.0
WP_009917698.1\|10184_10517_-	hypothetical protein	A8ATA5	Listeria_phage	1.8e-52	99.1
WP_009931624.1\|10588_11176_-\|tail	phage tail protein	A0A059T7Y4	Listeria_phage	4.0e-108	100.0
WP_009931623.1\|11196_11580_-	hypothetical protein	A0A059T681	Listeria_phage	6.1e-65	96.1
WP_012951550.1\|11576_11978_-	hypothetical protein	A0A059T5F3	Listeria_phage	2.1e-68	100.0

Anti-CRISPR protein detection

Acr_ID: NZ_MCHS01000028.1|WP_009931626.1|9972_10134_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_MCHS01000028.1|WP_009931626.1|9972_10134_-|hypothetical-protein

9972_10134_-

53 aa aa

1100-11978

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_MCHS01000037_1	TypeII	1.21\|8420\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8420-8449	30	2119-2148	2

1. spacer 1.21|8420|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MCHS01000028 position: 2119-2148, mismatch: 2

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattatttattttctcccaaataaaatca	Protospacer
*****.*****.******************

18. NZ_MCHS01000011

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

47 : 13907

Listeria_phage(90.91%)

integrase

attL 3849:3862|attR 12337:12350

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031669397.1\|47_257_-	hypothetical protein	A8ASN7	Listeria_phage	1.6e-14	64.2
WP_014930204.1\|267_435_-	hypothetical protein	A8ASN5	Listeria_phage	1.6e-17	80.0
WP_031641572.1\|431_1355_-	DnaD domain-containing protein	A8ATY7	Listeria_phage	2.3e-150	90.6
WP_031644198.1\|1374_2190_-	recombinase RecT	Q9T172	Listeria_phage	1.7e-144	94.8
WP_031669395.1\|2192_3152_-	YqaJ viral recombinase family protein	Q9T173	Listeria_phage	2.8e-151	83.1
WP_003733629.1\|3383_3572_-	hypothetical protein	Q9T175	Listeria_phage	1.2e-21	80.6
WP_031669394.1\|3676_3913_-	DUF771 domain-containing protein	A8ATY2	Listeria_phage	1.9e-37	88.5
3849:3862	attL	NA	NA	NA	NA
WP_031669393.1\|3918_4443_-	hypothetical protein	A8ASM7	Listeria_phage	8.3e-81	90.8
WP_031644189.1\|4564_5344_-	phage antirepressor KilAC domain-containing protein	A0A059T6E7	Listeria_phage	7.6e-139	96.5
WP_015455157.1\|5407_5605_+	hypothetical protein	Q9T179	Listeria_phage	6.2e-21	100.0
WP_061109212.1\|5606_5888_-	hypothetical protein	A8ATX8	Listeria_phage	2.5e-39	98.9
WP_015987418.1\|5884_6121_-	hypothetical protein	A8ATX7	Listeria_phage	1.1e-37	100.0
WP_003727745.1\|6132_6327_-	hypothetical protein	A0A059T6E5	Listeria_phage	6.3e-26	96.9
WP_003727743.1\|6551_6818_-	hypothetical protein	A0A059T7Q1	Listeria_phage	2.5e-41	100.0
WP_046155079.1\|6835_7147_+	hypothetical protein	NA	NA	NA	NA
WP_003770002.1\|7106_7292_-	hypothetical protein	NA	NA	NA	NA
WP_012582375.1\|7312_7546_-	helix-turn-helix transcriptional regulator	A8ASM3	Listeria_phage	1.6e-31	95.9
WP_031669386.1\|7708_8185_+	helix-turn-helix transcriptional regulator	A8ASM2	Listeria_phage	4.5e-57	80.3
WP_012582373.1\|8340_8508_+	hypothetical protein	NA	NA	NA	NA
WP_003747290.1\|8563_8782_+	hypothetical protein	A0A059T6E3	Listeria_phage	2.4e-26	81.9
WP_031669383.1\|8797_9520_+	hypothetical protein	A0A059T7P9	Listeria_phage	8.7e-105	99.6
WP_031669381.1\|9540_10248_+	hypothetical protein	A0A0B5CTT6	Listeria_phage	3.1e-91	74.0
WP_031669379.1\|10311_11442_+\|integrase	site-specific integrase	A8ATX2	Listeria_phage	2.3e-200	93.4
WP_015455208.1\|11717_13154_-	polysaccharide monooxygenase	A0A0K1Y848	Apis_mellifera_filamentous_virus	4.0e-24	35.8
12337:12350	attR	NA	NA	NA	NA
WP_003722600.1\|13310_13907_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	6.6e-58	57.4

DBSCAN-SWA_2

17823 : 25667

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722604.1\|17823_18795_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003722605.1\|18802_19771_-	YvcK family protein	A1IMD5	Streptococcus_phage	6.7e-68	43.3
WP_003722606.1\|19772_20648_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_031669377.1\|20755_22486_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	3.9e-175	53.8
WP_020246727.1\|22527_23589_-	galactose mutarotase	NA	NA	NA	NA
WP_009924988.1\|23605_24589_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.1e-52	38.4
WP_085299649.1\|24707_25667_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	9.9e-88	53.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

19. NZ_MCHS01000018

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

205 : 6915

Listeria_phage(100.0%)

integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003747322.1\|205_466_-	DUF3850 domain-containing protein	A0A059T7N3	Listeria_phage	3.1e-20	65.3
WP_003731819.1\|462_729_-	hypothetical protein	R4IBL5	Listeria_phage	1.9e-33	84.9
WP_031694757.1\|725_1301_-	DUF1642 domain-containing protein	A8ATD8	Listeria_phage	2.2e-26	41.8
WP_003731843.1\|1378_1594_-	hypothetical protein	NA	NA	NA	NA
WP_012951522.1\|1879_2122_-	hypothetical protein	NA	NA	NA	NA
WP_003730997.1\|2859_3045_-	hypothetical protein	A8ATD3	Listeria_phage	3.7e-28	98.4
WP_003730996.1\|3047_3290_-	hypothetical protein	A8ATD2	Listeria_phage	3.9e-41	93.8
WP_003730995.1\|3311_3503_-	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	5.4e-22	87.1
WP_045553345.1\|3569_3776_+	hypothetical protein	NA	NA	NA	NA
WP_160336567.1\|3759_3903_-	hypothetical protein	NA	NA	NA	NA
WP_003730992.1\|4171_4495_+	helix-turn-helix transcriptional regulator	A0A059T6G1	Listeria_phage	7.2e-35	71.0
WP_003730991.1\|4511_4964_+	ImmA/IrrE family metallo-endopeptidase	R4IBK9	Listeria_phage	4.8e-77	90.0
WP_003730990.1\|5014_5629_+	hypothetical protein	A0A059T7Z1	Listeria_phage	7.7e-78	77.0
WP_031660124.1\|5760_6915_+\|integrase	site-specific integrase	A0A059T688	Listeria_phage	1.1e-207	94.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

20. NZ_MCHS01000010

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

47 : 12069

Listeria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031669397.1\|47_257_-	hypothetical protein	A8ASN7	Listeria_phage	1.6e-14	64.2
WP_014930204.1\|267_435_-	hypothetical protein	A8ASN5	Listeria_phage	1.6e-17	80.0
WP_061107056.1\|431_1394_-	phage replisome organizer N-terminal domain-containing protein	A8ASN4	Listeria_phage	3.7e-151	86.1
WP_039153053.1\|1410_2070_-	ERF family protein	A8ASN3	Listeria_phage	2.7e-92	93.2
WP_039153051.1\|2075_2552_-	siphovirus Gp157 family protein	A8ASN2	Listeria_phage	7.6e-57	94.9
WP_015987074.1\|2548_2743_-	hypothetical protein	A8ASN1	Listeria_phage	7.1e-30	100.0
WP_039153046.1\|3047_3236_-	hypothetical protein	Q9T175	Listeria_phage	9.1e-22	80.6
WP_039153044.1\|3341_3557_-	hypothetical protein	Q9T176	Listeria_phage	2.4e-26	88.7
WP_039153042.1\|3553_4087_-	hypothetical protein	A8ATY1	Listeria_phage	1.3e-78	87.9
WP_039153040.1\|4211_4991_-	phage antirepressor KilAC domain-containing protein	A8ASM6	Listeria_phage	1.8e-140	96.9
WP_003731223.1\|5054_5597_+	hypothetical protein	A8ATX9	Listeria_phage	2.8e-95	100.0
WP_003731222.1\|5574_5928_-	hypothetical protein	A8ATX8	Listeria_phage	9.9e-54	100.0
WP_015987418.1\|5924_6161_-	hypothetical protein	A8ATX7	Listeria_phage	1.1e-37	100.0
WP_003719466.1\|6225_6429_+	hypothetical protein	A0A0B5D131	Listeria_phage	9.8e-30	100.0
WP_039153036.1\|6487_6700_-	helix-turn-helix domain-containing protein	A0A0B5D0D3	Listeria_phage	1.1e-31	97.1
WP_039153035.1\|6865_7288_+	helix-turn-helix domain-containing protein	A0A0B5CYL9	Listeria_phage	3.4e-69	97.1
WP_039153033.1\|7303_7729_+	ImmA/IrrE family metallo-endopeptidase	A0A0B5CTZ7	Listeria_phage	3.8e-76	99.3
WP_039153031.1\|7743_8349_+	hypothetical protein	NA	NA	NA	NA
WP_039153029.1\|8404_8935_+	hypothetical protein	A0A0B5D0D1	Listeria_phage	9.8e-05	24.7
WP_012951969.1\|9135_10650_+	putative DNA binding domain-containing protein	NA	NA	NA	NA
WP_039153028.1\|10710_12069_+	recombinase family protein	Q8LTD8	Listeria_phage	6.0e-256	98.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

21. NZ_MCHS01000004

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

154 : 23866

Listeria_phage(100.0%)

portal,capsid,plate,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031669401.1\|154_556_+	hypothetical protein	R4ICD6	Listeria_phage	1.8e-30	52.9
WP_031669403.1\|1109_1592_+	single-stranded DNA-binding protein	A0A059T5E0	Listeria_phage	2.0e-57	71.2
WP_031669404.1\|1610_1793_+	hypothetical protein	A8ASP6	Listeria_phage	2.2e-17	81.0
WP_031669406.1\|1737_2142_+	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	2.2e-57	83.6
WP_031669408.1\|2145_2529_+	DUF2481 family protein	A8ASP8	Listeria_phage	2.3e-35	56.7
WP_031669409.1\|2692_3127_+	hypothetical protein	A8ASQ1	Listeria_phage	3.0e-68	88.9
WP_031669411.1\|3387_3945_+	hypothetical protein	A8ASQ2	Listeria_phage	1.6e-82	87.1
WP_096827923.1\|4033_4471_+	hypothetical protein	A8ASQ1	Listeria_phage	3.3e-14	39.4
WP_031669414.1\|4514_5057_+\|terminase	terminase small subunit	A0A0B5CU16	Listeria_phage	3.1e-78	89.8
WP_031669417.1\|5025_6357_+\|terminase	PBSX family phage terminase large subunit	A8ASJ2	Listeria_phage	1.6e-250	94.1
WP_031669418.1\|6369_7860_+\|portal	phage portal protein	Q9T1C0	Listeria_phage	7.2e-279	98.2
WP_031669420.1\|7865_9005_+\|capsid	phage minor capsid protein	A0A0B5D147	Listeria_phage	3.2e-202	95.8
WP_031669422.1\|9083_9653_+	phage scaffolding protein	A0A0B5CTV7	Listeria_phage	3.1e-81	98.4
WP_031669424.1\|9676_10576_+\|capsid	phage major capsid protein	A0A0B5CU19	Listeria_phage	2.0e-167	99.7
WP_072217189.1\|10575_10734_+	hypothetical protein	A8ASJ7	Listeria_phage	5.1e-18	98.1
WP_031669425.1\|10735_11131_+	hypothetical protein	A0A0B5D0F6	Listeria_phage	1.5e-63	96.2
WP_031669427.1\|11130_11493_+	hypothetical protein	A0A059T658	Listeria_phage	6.0e-62	95.8
WP_031669428.1\|11492_11831_+	hypothetical protein	Q9T1B3	Listeria_phage	2.9e-58	99.1
WP_003727788.1\|11830_12238_+	hypothetical protein	Q9T1B2	Listeria_phage	9.0e-67	98.5
WP_031669430.1\|12240_12678_+	hypothetical protein	A0A0B5CYN3	Listeria_phage	7.2e-78	98.6
WP_031669432.1\|12607_12940_+	Ig domain-containing protein	Q9T1B0	Listeria_phage	7.7e-48	97.2
WP_031669433.1\|12995_13418_+\|tail	phage tail assembly chaperone	Q9T1A9	Listeria_phage	2.2e-68	97.1
WP_003735024.1\|13423_14023_+	hypothetical protein	A0A0B5CTW0	Listeria_phage	1.9e-76	72.0
WP_031669435.1\|14033_19418_+	tape measure protein	Q9T1A7	Listeria_phage	0.0e+00	89.7
WP_003722529.1\|19419_20238_+\|tail	phage tail family protein	Q9T1A6	Listeria_phage	6.8e-146	91.9
WP_031669437.1\|20246_21272_+\|tail	phage tail protein	Q9T1A5	Listeria_phage	8.1e-197	97.9
WP_003722527.1\|21272_22301_+	hypothetical protein	Q9T1A4	Listeria_phage	4.6e-192	100.0
WP_003722526.1\|22300_23374_+\|plate	phage baseplate upper protein	Q9T1A3	Listeria_phage	4.5e-198	100.0
WP_003722525.1\|23385_23703_+	hypothetical protein	Q9T1A2	Listeria_phage	6.2e-55	100.0
WP_003722524.1\|23707_23866_+	hypothetical protein	Q9T1A1	Listeria_phage	6.0e-19	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

22. NZ_MCHS01000025

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 14694

Listeria_phage(100.0%)

capsid,terminase,protease,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085299679.1\|0_245_-	hypothetical protein	A8ATA0	Listeria_phage	2.4e-38	100.0
WP_023548922.1\|254_425_-	hypothetical protein	A8AT99	Listeria_phage	6.9e-21	94.6
WP_061107418.1\|431_1583_-\|capsid	phage major capsid protein	A8AT98	Listeria_phage	2.7e-201	93.0
WP_045552976.1\|1609_2407_-\|protease	Clp protease ClpP	A0A059T5F2	Listeria_phage	4.3e-137	95.5
WP_085299675.1\|2403_3534_-\|portal	phage portal protein	A0A059T6F0	Listeria_phage	8.9e-213	98.1
WP_085299673.1\|3545_5189_-\|terminase	terminase large subunit	A0A059T7Q8	Listeria_phage	0.0e+00	98.9
WP_025981612.1\|5185_5542_-\|terminase	P27 family phage terminase small subunit	A8AT94	Listeria_phage	1.3e-45	98.0
WP_009928009.1\|5590_5905_-	HNH endonuclease	A8ATF8	Listeria_phage	3.8e-57	99.0
WP_026749920.1\|5904_6231_-	hypothetical protein	A0A059T5G5	Listeria_phage	8.3e-55	98.1
WP_031669127.1\|6690_7434_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_003747244.1\|7527_7953_-	DUF722 domain-containing protein	A8ATF6	Listeria_phage	2.2e-71	97.2
WP_085299671.1\|8147_8678_-	DUF3310 domain-containing protein	A8ATF5	Listeria_phage	1.9e-72	76.0
WP_085299681.1\|8790_9105_-	VRR-NUC domain-containing protein	Q8W5V6	Listeria_phage	3.7e-52	97.1
WP_085299694.1\|9391_11665_-	DNA primase	A8ATF3	Listeria_phage	0.0e+00	97.6
WP_039153564.1\|11687_12170_-	DUF669 domain-containing protein	A8ATF2	Listeria_phage	9.3e-87	98.8
WP_072215795.1\|12192_13434_-	DEAD/DEAH box helicase	A8ATF1	Listeria_phage	1.5e-213	95.8
WP_039153570.1\|13512_14202_-	AAA family ATPase	R4IDY8	Listeria_phage	6.8e-123	91.7
WP_039153573.1\|14214_14694_-	siphovirus Gp157 family protein	R4IBM0	Listeria_phage	1.9e-76	97.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

23. NZ_MCHS01000026

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 14761

Listeria_phage(100.0%)

portal,terminase,capsid,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085299679.1\|0_245_-	hypothetical protein	A8ATA0	Listeria_phage	2.4e-38	100.0
WP_023548922.1\|254_425_-	hypothetical protein	A8AT99	Listeria_phage	6.9e-21	94.6
WP_061107418.1\|431_1583_-\|capsid	phage major capsid protein	A8AT98	Listeria_phage	2.7e-201	93.0
WP_045552976.1\|1609_2407_-\|protease	Clp protease ClpP	A0A059T5F2	Listeria_phage	4.3e-137	95.5
WP_085299675.1\|2403_3534_-\|portal	phage portal protein	A0A059T6F0	Listeria_phage	8.9e-213	98.1
WP_085299673.1\|3545_5189_-\|terminase	terminase large subunit	A0A059T7Q8	Listeria_phage	0.0e+00	98.9
WP_025981612.1\|5185_5542_-\|terminase	P27 family phage terminase small subunit	A8AT94	Listeria_phage	1.3e-45	98.0
WP_009928009.1\|5590_5905_-	HNH endonuclease	A8ATF8	Listeria_phage	3.8e-57	99.0
WP_026749920.1\|5904_6231_-	hypothetical protein	A0A059T5G5	Listeria_phage	8.3e-55	98.1
WP_031669127.1\|6690_7434_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_003747244.1\|7527_7953_-	DUF722 domain-containing protein	A8ATF6	Listeria_phage	2.2e-71	97.2
WP_085299671.1\|8147_8678_-	DUF3310 domain-containing protein	A8ATF5	Listeria_phage	1.9e-72	76.0
WP_061691436.1\|8790_9105_-	VRR-NUC domain-containing protein	A8ATF4	Listeria_phage	3.4e-53	98.1
WP_085299696.1\|9438_11727_-	DNA primase	A0A059T6A4	Listeria_phage	0.0e+00	94.3
WP_009928019.1\|11749_12235_-	DUF669 domain-containing protein	A0A059T5G4	Listeria_phage	2.9e-88	100.0
WP_031669966.1\|12259_13516_-	DEAD/DEAH box helicase	Q8W5V9	Listeria_phage	2.7e-234	96.2
WP_085299698.1\|13579_14269_-	AAA family ATPase	R4IDY8	Listeria_phage	3.5e-127	95.6
WP_039153573.1\|14281_14761_-	siphovirus Gp157 family protein	R4IBM0	Listeria_phage	1.9e-76	97.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

24. NZ_MCHS01000027

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1100 : 11978

Listeria_phage(100.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031669134.1\|1100_3395_-\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	0.0e+00	98.3
WP_023553822.1\|3407_5057_-\|tail	phage tail family protein	A0A059T682	Listeria_phage	0.0e+00	99.6
WP_085299700.1\|5049_9969_-\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	96.3
WP_009931626.1\|9972_10134_-	hypothetical protein	A0A059T6F4	Listeria_phage	4.3e-20	98.0
WP_009917698.1\|10184_10517_-	hypothetical protein	A8ATA5	Listeria_phage	1.8e-52	99.1
WP_009931624.1\|10588_11176_-\|tail	phage tail protein	A0A059T7Y4	Listeria_phage	4.0e-108	100.0
WP_009931623.1\|11196_11580_-	hypothetical protein	A0A059T681	Listeria_phage	6.1e-65	96.1
WP_012951550.1\|11576_11978_-	hypothetical protein	A0A059T5F3	Listeria_phage	2.1e-68	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

25. NZ_MCHS01000037

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_MCHS01000037_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_MCHS01000037_1

7065-8485

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR

21 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_MCHS01000037_1

>merge|NZ_MCHS01000037|1|7065-8485|CRISPRCasFinder,CRT,PILER-CR
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAACCCCTGTTAGCGATGGGGGGAGAATATTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTTTCAGTGACAACAACAGCACCGTCCATTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTTAGCAACTCTAGTTATCGAGTGATTTAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAAAGTCGGGAACGGATCTTCCTTGTCGGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCTTTTTTTCTTGGTGTAGGTGATTTCGATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTGTTAATGTCATTTTTCATCATCCTTTATGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCCTTTGCTGAACGGACTAGACAGTCACCACGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACATTTATGTGAATTTAGTGATGAATGGCAGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAACCATTTGAATCCAACGACTAATATAGCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTGGTAACAGAAACGTTCCAGGAGAAAATGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGATGCCGCAGCATATATATTTAATTGAGCTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGTTTGAGTGGGAGGAAGACGATTTACTTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAATGGTGAATGCGTTGAAGAAGGAGGAACTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAACCTCAACGTTAGGGCTTTTTTTATGCAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACACAGCAAGCCCACTAGTTTCGGATTTTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACATGAAAGAGCATTCAGACTTTGGAAAAACGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAAGCTAATGCGGTTATCTTTCGTAAGGTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTATACAGGTTAGGAAGTAAACTCCTTGTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCTTAAAGTTGTCAACTTCTATTTTTTATATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAAAAACGTATCAAAAGGCACTGTCGCGATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCATTGTTTATCTTCTCCCAAATAAAATCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_MCHS01000037|1|1|7065-8485|CRISPRCasFinder
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAAC	CCCTGTTAGCGATGGGGGGAGAATATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTTTCAGTGACAACAACAGCACCGTCCATT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTAGCAACTCTAGTTATCGAGTGATTTAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAAGTCGGGAACGGATCTTCCTTGTCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTTTTTTTCTTGGTGTAGGTGATTTCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTTAATGTCATTTTTCATCATCCTTTATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCTTTGCTGAACGGACTAGACAGTCACCAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATTTATGTGAATTTAGTGATGAATGGCAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAACCATTTGAATCCAACGACTAATATAGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGGTAACAGAAACGTTCCAGGAGAAAATGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GATGCCGCAGCATATATATTTAATTGAGCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTTTGAGTGGGAGGAAGACGATTTACTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATGGTGAATGCGTTGAAGAAGGAGGAACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACCTCAACGTTAGGGCTTTTTTTATGCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACACAGCAAGCCCACTAGTTTCGGATTTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATGAAAGAGCATTCAGACTTTGGAAAAACG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGCTAATGCGGTTATCTTTCGTAAGGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTATACAGGTTAGGAAGTAAACTCCTTGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTTAAAGTTGTCAACTTCTATTTTTTATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAAAAACGTATCAAAAGGCACTGTCGCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATTGTTTATCTTCTCCCAAATAAAATCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_MCHS01000037|1|1|7065-8485|CRT
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAAC	CCCTGTTAGCGATGGGGGGAGAATATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTTTCAGTGACAACAACAGCACCGTCCATT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTAGCAACTCTAGTTATCGAGTGATTTAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAAGTCGGGAACGGATCTTCCTTGTCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTTTTTTTCTTGGTGTAGGTGATTTCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTTAATGTCATTTTTCATCATCCTTTATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCTTTGCTGAACGGACTAGACAGTCACCAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATTTATGTGAATTTAGTGATGAATGGCAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAACCATTTGAATCCAACGACTAATATAGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGGTAACAGAAACGTTCCAGGAGAAAATGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GATGCCGCAGCATATATATTTAATTGAGCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTTTGAGTGGGAGGAAGACGATTTACTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATGGTGAATGCGTTGAAGAAGGAGGAACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACCTCAACGTTAGGGCTTTTTTTATGCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACACAGCAAGCCCACTAGTTTCGGATTTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATGAAAGAGCATTCAGACTTTGGAAAAACG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGCTAATGCGGTTATCTTTCGTAAGGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTATACAGGTTAGGAAGTAAACTCCTTGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTTAAAGTTGTCAACTTCTATTTTTTATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAAAAACGTATCAAAAGGCACTGTCGCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATTGTTTATCTTCTCCCAAATAAAATCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_MCHS01000037|1|1|7129-8485|PILER-CR
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTTTCAGTGACAACAACAGCACCGTCCATT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTAGCAACTCTAGTTATCGAGTGATTTAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAAGTCGGGAACGGATCTTCCTTGTCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTTTTTTTCTTGGTGTAGGTGATTTCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTTAATGTCATTTTTCATCATCCTTTATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCTTTGCTGAACGGACTAGACAGTCACCAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATTTATGTGAATTTAGTGATGAATGGCAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAACCATTTGAATCCAACGACTAATATAGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGGTAACAGAAACGTTCCAGGAGAAAATGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GATGCCGCAGCATATATATTTAATTGAGCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTTTGAGTGGGAGGAAGACGATTTACTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATGGTGAATGCGTTGAAGAAGGAGGAACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACCTCAACGTTAGGGCTTTTTTTATGCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACACAGCAAGCCCACTAGTTTCGGATTTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATGAAAGAGCATTCAGACTTTGGAAAAACG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGCTAATGCGGTTATCTTTCGTAAGGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTATACAGGTTAGGAAGTAAACTCCTTGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTTAAAGTTGTCAACTTCTATTTTTTATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAAAAACGTATCAAAAGGCACTGTCGCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATTGTTTATCTTCTCCCAAATAAAATCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_MCHS01000037.1\|WP_015455272.1\|5632_6055_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NZ_MCHS01000037.1\|WP_003749666.1\|17174_17567_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_MCHS01000037.1\|WP_031669209.1\|10470_14475_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_MCHS01000037.1\|WP_014602247.1\|4759_5611_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381359
NZ_MCHS01000037.1\|WP_085299721.1\|9603_10470_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_MCHS01000037.1\|WP_031668932.1\|1894_2923_-\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_MCHS01000037.1\|WP_023548327.1\|6176_6539_-\|hypothetical-protein	unknown	unknown	unknown
NZ_MCHS01000037.1\|WP_010959067.1\|18972_19770_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_MCHS01000037.1\|WP_003727703.1\|17588_18026_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_MCHS01000037.1\|WP_015455273.1\|18220_18967_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_MCHS01000037.1\|WP_003733030.1\|14999_15488_-\|hypothetical-protein	unknown	unknown	unknown
NZ_MCHS01000037.1\|WP_031669208.1\|8613_9276_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_MCHS01000037.1\|WP_031668930.1\|3191_4718_+\|GW-domain-containing-glycosaminoglycan-binding-protein	unknown	unknown	gnl\|CDD\|224619
NZ_MCHS01000037.1\|WP_003733027.1\|9265_9607_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_MCHS01000037.1\|WP_003733031.1\|15497_16883_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368093

Protein	Function_ID	Function_description	E-value
NZ_MCHS01000037.1\|WP_015455272.1\|5632_6055_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.08766e-41
NZ_MCHS01000037.1\|WP_003749666.1\|17174_17567_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	6.78953e-84
NZ_MCHS01000037.1\|WP_031669209.1\|10470_14475_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_MCHS01000037.1\|WP_014602247.1\|4759_5611_-\|aldo/keto-reductase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	1.21419e-171
NZ_MCHS01000037.1\|WP_085299721.1\|9603_10470_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.67697e-129
NZ_MCHS01000037.1\|WP_031669208.1\|8613_9276_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.3156e-114
NZ_MCHS01000037.1\|WP_031668932.1\|1894_2923_-\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	2.7266e-115
NZ_MCHS01000037.1\|WP_010959067.1\|18972_19770_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	4.19414e-53
NZ_MCHS01000037.1\|WP_003727703.1\|17588_18026_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.08607e-102
NZ_MCHS01000037.1\|WP_015455273.1\|18220_18967_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.93371e-127
NZ_MCHS01000037.1\|WP_003733027.1\|9265_9607_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.15214e-45
NZ_MCHS01000037.1\|WP_031668930.1\|3191_4718_+\|GW-domain-containing-glycosaminoglycan-binding-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	2.3456e-69
NZ_MCHS01000037.1\|WP_003733031.1\|15497_16883_-\|hypothetical-protein	gnl\|CDD\|368093	pfam04740, LXG, LXG domain of WXG superfamily. This domain is present is the N-terminal region of a group of polymorphic toxin proteins in bacteria. It is predicted to use Type VII secretion pathway to mediate export of bacterial toxins.	5.37469e-18

>NZ_MCHS01000037.1|WP_023548327.1|6176_6539_-|hypothetical-protein
MKKTSIIFTFCALLLTACSTTTKEIPRQTTEATGTIEQVETESILIKNFKIKNDNNTPELSVRFHISEKYHDETGNKIKRTELNKNDNIKIILTKDFQIQETSPAQIDPKYVQKIILLNK
>NZ_MCHS01000037.1|WP_015455272.1|5632_6055_-|MerR-family-transcriptional-regulator
MNIKQAADMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSELNWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKQVRDLLVYKIDSYDSHIAQFKAGELNADNVEKLWERDKF
>NZ_MCHS01000037.1|WP_014602247.1|4759_5611_-|aldo/keto-reductase
MKTVKLNNGVEVPILGFGTYQITDAAEAEQAVKDAIKAGYRHIDTAQSYMNEEAVGRGIAASGVDRKELFITTKIWVENVSYKGVMSSFDRSLKRLGLDYVDLLLIHQPFNDVYGAWIAMEELQASGKIRAIGVSNFSPDRVIDLAAFNEVTPQVNQIEVNPFQQQTANLAILRKEGVAIEAWAPFAEGKNDIFNNPVLTKIGAKYGKSAAQVILRWLVEQDIIVLAKSVKPERMAQNLAIFDFELTEADKEEIAGLNQGESQFFSHADPEMVKWMASRKLNV
>NZ_MCHS01000037.1|WP_031668930.1|3191_4718_+|GW-domain-containing-glycosaminoglycan-binding-protein
MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTAQVNLTTSQQAFIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSNNLFGIKGTYKGKSVSMGTMEASGSTTANFRVYPSWKESIEDHTALITENARYQDAVGETDYRKALQAIKDGGYATDPDYVSKLVAIIERYNLDKYDVIYDKIDSNQSLAAIGTVAENKEQEVIWSAPYNTENANKIGTLENYSGRNLEISWEAKTEKGLWYFIRENNKDIGWVNSNALKINYHQKEDENVHLTKYVDDLSAHVYRLPSPEKQFDNGTIAKYDRKALQVDKKITRGGYAWFRISEGEKVIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATDNVWTAPFNTKNAEKLAPLADYNNEKLEIVTRAKAGNTLWYQFKVGGKLVGWASEKDLNVFYTPAKEEPVKQVAYVKDPTAKLYNKPVESTSTNPKAVGFYYGKLLAVDKTATILGEDWLHLKDSQNSLGWIKAIDINS
>NZ_MCHS01000037.1|WP_031668932.1|1894_2923_-|Mrp/NBP35-family-ATP-binding-protein
MLNEQQITRLLYRLQDPVLEASLEETEGVLEVQVLEETANIKIALADPAVETNHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSEASETKFLAIASGKGGVGKSTVSANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPHKENGQIIPVETHGIQMISMDFFVEQGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGTGDVALDIHTLIPKCNELIVTTPHYAAASVASRAGYMAAKNNHKIIGVIENMSYLTLADGQVLKVFGQGGGEKVAADLETQLLIQLPIEQPEPNGNGYVSALFNSSSTSGKAYKTLAEKIIPYLS
>NZ_MCHS01000037.1|WP_031669208.1|8613_9276_-|type-II-A-CRISPR-associated-protein-Csn2
MNFNFKLLDEPITIEDSTIFVIEDVRVFANVAKLFYQYDETEELKVFNTKQHPLKSSELMLVTDILGHDINSAATLKLIYTDLEQQLNEKPKVKSMIDKLTATISELIGYELLEHELDLEEDEITVIELFKALGIKIETKSDTVFEKLIEIVQVYKYLSKKKLLVLINVCSYLTEEELLELRRYISLYQVKVLFIEPRKIKGSPQVTLDSDYFLHVENSV
>NZ_MCHS01000037.1|WP_003733027.1|9265_9607_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMLLMFDMPTDTAKERKAYRQFRRFILSEGFIMHQYSVYSKILLNGTASKAMLARLKQQNPKKGLITLLTVTEKQFARMVYLSGEQNKSVGNSDARLIFLGDAIDEF
>NZ_MCHS01000037.1|WP_085299721.1|9603_10470_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVVVNSHSKLSYKNQHLVFKSAYQHEMIHLSEIDVLILETTDITLTTMLINCLVAENILILFCDDKRLPIGKVLPFYGRHDSSLQLSKQLGWDSELKSEVWTEIISQKILNQSTFLSMLNYDEKADSLIKLHETLEIFDPTNREGHAARIYFNQLFGNDFTREQENDINSGLNYGYTLLLSIFARELVKSGCMTQFGLKHSNQFNDFNFASDIMESFRPLVDQIVYEKRNEDFQVIKRSLFELFNKQFDYNDQHMFLTNIASDYTKKIVKVLNEEREGVPEFRI
>NZ_MCHS01000037.1|WP_031669209.1|10470_14475_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKKPYTIGLDIGTNSVGWAVLTDQYDLVKRKMKISGDSEKKQIKKNFWGVRLFEKGETAAKRRMSRTARRRIERRRNRISYLQEIFAIQMNEVDDNFFNRLKESFYAESDKKYNRHPFFGTVEEEVAYYKDFPTIYHLRKELIDSQKKADLRLVYLALAHIIKYRGHFLIEGALDTKNTSIDEMFKQFLQIYNQVFANDIEEASLKKTEKNQEVAQILAEKFTRKDKLDKILSLYPGEKTTGVFAQFVNIIVGSTGKFKKHFNLHEKKDINCAEDTYDTDLESLLAIIGDEFAEVFVAAKNAYNAVVLSNIITVTDSTTRAKLSASLIERFENHKEDLKKMKRFVRTYLPEKYDEIFDDTEKHGYAGYISGKTKQADFYKYMKATLEKIEGADYFIAKIEEENFLRKQRTFDNGVIPHQLHLEELEAILHQQAKYYPFLREDYEKIKSLVTFRIPYFVGPLAKGQSEFAWLTRKADGEIRPWNIEEKVDFGKSAVDFIEKMTNKDTYLPKENVLPKHSLCYQKYMVYNELTKVRYIDDQGKTNYFSGQEKQQIFNDLFKQKRKVKKKDLELFLRNINQIESPTIEGLEDSFNASYATYHDLLKVGMKQEILDNPLNTEMLEDIVKILTVFEDKRMIKEQLQQFSDVLDGTVLKKLERRHYTGWGRLSAKLLVGIRDKQSHLTILDYLMNDDGLNRNLMQLINDSNLSFKSIIEKEQVSTADKDLQSIVADLAGSPAIKKGILQSLKIVDELVSVMGYPPQTIVVEMARENQTTNKGKNNSKPRYKSLEKAIKEFGSQILKEHPTDNQELKNNRLYLYYLQNGKDMYTGQELDIHNLSNYDIDHIVPQSFITDNSVDNLVLTSSAGNREKGDNVPPLEIVQKRKIFWEKLYQGNLMSKRKFDYLTKAERGGLTEADKARFIHRQLVETRQITKNVANILHQRFNYKTDGNKDTMETVRIVTLKSALVSQFRKQFQFYKVREVNDYHHAHDAYLNGVVANTLLKVYPQLEPEFVYGEYHQFDWFKANKATAKKQFYTNIMLFFAQKDRIIDENGEILWDKRYLETVKKVLGYRQMNIVKKTEIQKGEFSNVTPNPKGKSNKLIPRKKDWDPIKYGGFDGSKMAYAIIIEYEKQKRKVRIEKKLIQINIMEREAFEKDEKTFLEEKGYHQPKVLIKVPKYTLYECENGRRRMLGSANEAHKGNQMLLPNHLMALLYHAEKYEAIDGESLAYIEVHRALFDELLAYISEFARKYTLSNDRLDEINMLYERNKDGDVKSIAESFVSLKKFNAFGVHQDFSFFGTKIERKRDRKLNELLNSTIIYQSITGLYESRKRLDN
>NZ_MCHS01000037.1|WP_003733030.1|14999_15488_-|hypothetical-protein
MKEDILAVYKKFEINNLNMFFDDLIEYVNKYYTVFSKYISLDYLDAITRLDSTSLILGHSDDNFEIAIPFYTNKVIEGLNEEELSNQVSSLIWDLSAYMTEELCPSCNDSNLRLTTMVSREDTLVKFCDECLYTGIRNERVEIEEDLVPAPKKKVEEYLRGK
>NZ_MCHS01000037.1|WP_003733031.1|15497_16883_-|hypothetical-protein
MSRIDIAELNEFLHNLKSSNDEARRMLGKMQEVTNAYATDTSLKGKAIETSQAYFDQTYSVICKSLIEALDESEERLERYIREFGEQVDSSYNARIDAEMLQEAIFRLAEIKRKQEDLLQRMSASTGTLHEGEQQRLRTQFTDALEQEKILERYIAFEQSHGRFFDSFSELVYCAGKAVRELAANVTFNSQTGTYDIGKLDTNKFHALQKFLPKKKKYNFNEYEIRWNGAAHILLRGDVVDAEATAAYNDAVAKGELPKVSNQATESAEEINAVVNALKKGQDPITGQEISKAQSFGIAIGLVYMYVGGKYKGRKIKLPKNALENLEKQQAFKDKEVGGADIPNPNVGIVQSRVNLAENPTRFSPSKNAGMKHVRNRHYNPSKNAGQFTIPESDLKNILQSKQVVNTPVKQIESGDFERVIDIGKNMGTVKPSLGGQTTTWIKVITDKAGNIITTYPVPKP
>NZ_MCHS01000037.1|WP_003749666.1|17174_17567_-|30S-ribosomal-protein-S9
MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVRGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDSRMKERKKPGLKGARRAPQFSKR
>NZ_MCHS01000037.1|WP_003727703.1|17588_18026_-|50S-ribosomal-protein-L13
MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQQPEVYELRG
>NZ_MCHS01000037.1|WP_015455273.1|18220_18967_-|tRNA-pseudouridine(38-40)-synthase-TruA
MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRVTASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDILKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQGLYLWRVDYE
>NZ_MCHS01000037.1|WP_010959067.1|18972_19770_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFAYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLTNGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLLRWRFADTFLLISLAVLSGLLFWLRS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_MCHS01000037_1	1.6\|7429\|31\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7429-7459	31	NZ_MCHS01000039.1	99122-99152	0	1.0
NZ_MCHS01000037_1	1.11\|7760\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7760-7789	30	NZ_MCHS01000034.1	497547-497576	1	0.967
NZ_MCHS01000037_1	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	NZ_MCHS01000034.1	492222-492251	1	0.967
NZ_MCHS01000037_1	1.21\|8420\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8420-8449	30	NZ_MCHS01000027.1	2119-2148	2	0.933
NZ_MCHS01000037_1	1.21\|8420\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8420-8449	30	NZ_MCHS01000028.1	2119-2148	2	0.933

1. spacer 1.6|7429|31|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to position: 99122-99152, mismatch: 0, identity: 1.0

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
ttgttaatgtcatttttcatcatcctttatg	Protospacer
*******************************

2. spacer 1.11|7760|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to position: 497547-497576, mismatch: 1, identity: 0.967

gatgccgcagcatatatatttaattgagct	CRISPR spacer
gatgccgcagcgtatatatttaattgagct	Protospacer
***********.******************

3. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to position: 492222-492251, mismatch: 1, identity: 0.967

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacctcaccgttagggctttttttatgcaa	Protospacer
******* **********************

4. spacer 1.21|8420|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to position: 2119-2148, mismatch: 2, identity: 0.933

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattatttattttctcccaaataaaatca	Protospacer
*****.*****.******************

5. spacer 1.21|8420|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to position: 2119-2148, mismatch: 2, identity: 0.933

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattatttattttctcccaaataaaatca	Protospacer
*****.*****.******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_MCHS01000037_1	1.9\|7628\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7628-7657	30	AJ312240	Bacteriophage PSA complete genome	9843-9872	0	1.0
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	NC_042048	Listeria phage LMTA-34, complete genome	74603-74632	0	1.0
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	NC_024360	Listeria phage LMSP-25, complete genome	74603-74632	0	1.0
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	4400-4429	0	1.0
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	FW590615	JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME	2528-2557	0	1.0
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	HI504184	Sequence 26 from Patent EP2147092	2528-2557	0	1.0
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	AJ417489	bacteriophage U153 int gene for U153 integrase	2528-2557	0	1.0
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	KJ094022	Listeria phage LP-030-3, complete genome	30296-30325	0	1.0
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	AJ312240	Bacteriophage PSA complete genome	18523-18552	0	1.0
NZ_MCHS01000037_1	1.21\|8420\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8420-8449	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	225302-225331	0	1.0
NZ_MCHS01000037_1	1.21\|8420\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8420-8449	30	KJ094023	Listeria phage LP-101, complete genome	15775-15804	0	1.0
NZ_MCHS01000037_1	1.2\|7165\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7165-7194	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	209277-209306	1	0.967
NZ_MCHS01000037_1	1.2\|7165\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7165-7194	30	NC_009812	Listeria phage B025, complete genome	196-225	1	0.967
NZ_MCHS01000037_1	1.11\|7760\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7760-7789	30	DQ003642	Listeria phage A006, complete genome	15360-15389	1	0.967
NZ_MCHS01000037_1	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	4442-4471	1	0.967
NZ_MCHS01000037_1	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	FW590615	JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME	2486-2515	1	0.967
NZ_MCHS01000037_1	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	HI504184	Sequence 26 from Patent EP2147092	2486-2515	1	0.967
NZ_MCHS01000037_1	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	AJ417489	bacteriophage U153 int gene for U153 integrase	2486-2515	1	0.967
NZ_MCHS01000037_1	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	229925-229954	1	0.967
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	MN172529	Listeria phage LP-039, complete genome	59048-59077	1	0.967
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	MT178766	Listeria virus P100plus, complete genome	26020-26049	1	0.967
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	NC_025440	Listeria phage WIL-1, complete genome	106789-106818	1	0.967
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	NC_047872	Listeria phage LMTA-94, complete genome	72338-72367	1	0.967
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	MT178767	Listeria virus P200, complete genome	26020-26049	1	0.967
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	DQ004855	Listeria bacteriophage P100, complete genome	26019-26048	1	0.967
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	KJ591605	Listeria phage LMTA-57, complete genome	83087-83116	1	0.967
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	KJ094033	Listeria phage LP-048, complete genome	61505-61534	1	0.967
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	KJ668715	Listeria phage LMTA-34, partial genome	59201-59230	1	0.967
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	MN128594	Listeria phage LP-066, complete genome	60544-60573	1	0.967
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	KJ094030	Listeria phage LP-083-2, complete genome	65710-65739	1	0.967
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	KJ094031	Listeria phage LP-124, complete genome	27825-27854	1	0.967
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	NC_021539	Listeria phage LP-030-2, complete genome	18331-18360	1	0.967
NZ_MCHS01000037_1	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	NC_021539	Listeria phage LP-030-2, complete genome	18372-18401	2	0.933
NZ_MCHS01000037_1	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	KJ094022	Listeria phage LP-030-3, complete genome	30338-30367	2	0.933
NZ_MCHS01000037_1	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	MT500540	Listeria phage LP-HM00113468, complete genome	24311-24340	2	0.933
NZ_MCHS01000037_1	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	KP399678	Listeria phage vB_LmoS_293, complete genome	21903-21932	2	0.933
NZ_MCHS01000037_1	1.15\|8024\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8024-8053	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	213868-213897	2	0.933
NZ_MCHS01000037_1	1.15\|8024\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8024-8053	30	KJ094023	Listeria phage LP-101, complete genome	4341-4370	2	0.933
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	MT438761	Listeria virus P61, complete genome	70795-70824	2	0.933
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	60394-60423	2	0.933
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	DQ003638	Listeria phage A511, complete genome	59585-59614	2	0.933
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	KJ591604	Listeria phage LMTA-148, complete genome	66986-67015	2	0.933
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	80589-80618	2	0.933
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	NC_041862	Listeria phage LP-064, complete genome	69005-69034	2	0.933
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	JX126918	Listeria phage LP-125, complete genome	69007-69036	2	0.933
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	58894-58923	2	0.933
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	KJ535721	Listeria phage List-36, complete genome	69453-69482	2	0.933
NZ_MCHS01000037_1	1.18\|8222\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8222-8251	30	FJ147490	Listeria phage 20422-1 unknown genes	607-636	2	0.933
NZ_MCHS01000037_1	1.2\|7165\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7165-7194	30	KJ094023	Listeria phage LP-101, complete genome	188-217	3	0.9
NZ_MCHS01000037_1	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	AJ312240	Bacteriophage PSA complete genome	18565-18594	3	0.9
NZ_MCHS01000037_1	1.21\|8420\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8420-8449	30	MT500540	Listeria phage LP-HM00113468, complete genome	29150-29179	3	0.9
NZ_MCHS01000037_1	1.15\|8024\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8024-8053	30	MT500540	Listeria phage LP-HM00113468, complete genome	284-313	4	0.867
NZ_MCHS01000037_1	1.8\|7562\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7562-7591	30	NC_003216	Listeria phage A118, complete genome	19234-19263	5	0.833
NZ_MCHS01000037_1	1.8\|7562\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7562-7591	30	AJ242593	Bacteriophage A118 complete genome	19234-19263	5	0.833
NZ_MCHS01000037_1	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	NC_003216	Listeria phage A118, complete genome	21913-21942	5	0.833
NZ_MCHS01000037_1	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	AJ242593	Bacteriophage A118 complete genome	21913-21942	5	0.833
NZ_MCHS01000037_1	1.16\|8090\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8090-8119	30	KJ094028	Listeria phage LP-083-1 contig 2, partial genome	14832-14861	5	0.833
NZ_MCHS01000037_1	1.16\|8090\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8090-8119	30	DQ003641	Listeria phage P35, complete genome	30954-30983	5	0.833
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	NZ_CP026684	Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM2, complete sequence	95843-95872	5	0.833
NZ_MCHS01000037_1	1.2\|7165\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7165-7194	30	MH823906	Citrobacter phage Maroon, complete genome	170657-170686	6	0.8
NZ_MCHS01000037_1	1.2\|7165\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7165-7194	30	LC589952	Enterobacter phage vB_EkoM5VN DNA, complete genome	40506-40535	6	0.8
NZ_MCHS01000037_1	1.2\|7165\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7165-7194	30	KX431560	Cronobacter phage vB_CsaM_leN, complete genome	171110-171139	6	0.8
NZ_MCHS01000037_1	1.2\|7165\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7165-7194	30	KT381880	Citrobacter phage Margaery, complete genome	169990-170019	6	0.8
NZ_MCHS01000037_1	1.2\|7165\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7165-7194	30	NC_048645	Cronobacter phage vB_CsaM_leB, complete genome	169501-169530	6	0.8
NZ_MCHS01000037_1	1.9\|7628\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7628-7657	30	CP021182	Sphingomonas wittichii DC-6 plasmid pDC01, complete sequence	192736-192765	6	0.8
NZ_MCHS01000037_1	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	X85009	Bacteriophage A500 hol500 and ply500 genes	2291-2320	6	0.8
NZ_MCHS01000037_1	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	DQ003637	Listeria phage A500, complete genome	21938-21967	6	0.8
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	KT207918	Bacillus phage Eyuki, complete genome	116456-116485	6	0.8
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	NC_031054	Bacillus phage DirtyBetty, complete genome	116445-116474	6	0.8
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	NZ_CP031070	Bacillus sp. JAS24-2 plasmid pl278, complete sequence	44141-44170	6	0.8
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	MH538193	Bacillus phage Saddex, complete genome	117316-117345	6	0.8
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	MF288919	Bacillus phage AaronPhadgers, complete genome	115968-115997	6	0.8
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	MG763894	Bacillus phage HonestAbe, complete genome	116215-116244	6	0.8
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	NC_031116	Bacillus phage Zuko, complete genome	117017-117046	6	0.8
NZ_MCHS01000037_1	1.4\|7297\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7297-7326	30	NZ_CP031445	Acinetobacter baumannii strain MDR-UNC plasmid unnamed1, complete sequence	66833-66862	7	0.767
NZ_MCHS01000037_1	1.4\|7297\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7297-7326	30	NZ_CP040426	Acinetobacter baumannii strain PB364 plasmid pPB364_1, complete sequence	15361-15390	7	0.767
NZ_MCHS01000037_1	1.4\|7297\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7297-7326	30	NZ_CP029570	Acinetobacter baumannii strain DA33098 plasmid pDA33098-108, complete sequence	60796-60825	7	0.767
NZ_MCHS01000037_1	1.4\|7297\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7297-7326	30	NZ_CP027122	Acinetobacter baumannii strain AR_0056 plasmid unnamed1, complete sequence	50797-50826	7	0.767
NZ_MCHS01000037_1	1.4\|7297\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7297-7326	30	NZ_CP027608	Acinetobacter baumannii strain AR_0102 plasmid unnamed1, complete sequence	44202-44231	7	0.767
NZ_MCHS01000037_1	1.4\|7297\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7297-7326	30	NZ_CP026705	Acinetobacter baumannii strain AR_0056 plasmid tig00000058_pilon, complete sequence	30996-31025	7	0.767
NZ_MCHS01000037_1	1.4\|7297\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7297-7326	30	NZ_CP035046	Acinetobacter baumannii strain ABUH793 plasmid p107.0Kbp, complete sequence	45158-45187	7	0.767
NZ_MCHS01000037_1	1.4\|7297\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7297-7326	30	MK504446	Lactobacillus phage SAC12B, complete genome	116668-116697	7	0.767
NZ_MCHS01000037_1	1.5\|7363\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7363-7392	30	NC_021559	Prochlorococcus phage P-SSM3 genomic sequence	94742-94771	7	0.767
NZ_MCHS01000037_1	1.6\|7429\|31\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7429-7459	31	NZ_CP012367	Enterococcus durans strain KLDS 6.0933 plasmid unnamed 1, complete sequence	67648-67678	7	0.774
NZ_MCHS01000037_1	1.6\|7429\|31\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7429-7459	31	NZ_CP012385	Enterococcus durans strain KLDS 6.0930 plasmid unnamed 1, complete sequence	30800-30830	7	0.774
NZ_MCHS01000037_1	1.8\|7562\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7562-7591	30	NC_019274	Psychrobacter sp. DAB_AL62B plasmid pP62BP1, complete sequence	30251-30280	7	0.767
NZ_MCHS01000037_1	1.8\|7562\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7562-7591	30	NZ_AP018257	Calothrix sp. NIES-4071 plasmid plasmid2 DNA, complete genome	212124-212153	7	0.767
NZ_MCHS01000037_1	1.8\|7562\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7562-7591	30	MT254578	Bacillus phage Izhevsk, complete genome	9172-9201	7	0.767
NZ_MCHS01000037_1	1.16\|8090\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8090-8119	30	NZ_MH113855	Vibrio alginolyticus strain Vb1796 plasmid pVb1796, complete sequence	138833-138862	7	0.767
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	KX961629	Bacillus phage BJ4, complete genome	115259-115288	7	0.767
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	NC_031070	Bacillus phage Nemo, complete genome	116990-117019	7	0.767
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	MF288920	Bacillus phage Zainny, complete genome	116438-116467	7	0.767
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	KJ489399	Bacillus phage Hakuna, complete genome	114490-114519	7	0.767
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	NC_031027	Bacillus phage SageFayge, complete genome	115953-115982	7	0.767
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	KX349902	Bacillus phage Kida, complete genome	116180-116209	7	0.767
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	KX156152	Bacillus phage Smudge, complete genome	116059-116088	7	0.767
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	KJ489401	Bacillus phage Megatron, complete genome	115838-115867	7	0.767
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	MN038179	Bacillus phage ALPS, complete genome	116242-116271	7	0.767
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	MH638311	Bacillus phage OmnioDeoPrimus, complete genome	115905-115934	7	0.767
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	MF288918	Bacillus phage Bubs, complete genome	117020-117049	7	0.767
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	KX961632	Bacillus phage SBP8a, complete genome	115649-115678	7	0.767
NZ_MCHS01000037_1	1.21\|8420\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8420-8449	30	MG592459	Vibrio phage 1.084.O._10N.261.49.F5, partial genome	30611-30640	7	0.767
NZ_MCHS01000037_1	1.4\|7297\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7297-7326	30	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	795158-795187	8	0.733
NZ_MCHS01000037_1	1.5\|7363\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7363-7392	30	NC_015156	Vibrio nigripulchritudo plasmid VIBNI_pA, complete genome	135244-135273	8	0.733
NZ_MCHS01000037_1	1.6\|7429\|31\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7429-7459	31	NZ_CP031070	Bacillus sp. JAS24-2 plasmid pl278, complete sequence	155373-155403	8	0.742
NZ_MCHS01000037_1	1.6\|7429\|31\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7429-7459	31	AP013449	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C66A-MedDCM-OCT-S35-C82	13642-13672	8	0.742
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	NZ_CP016726	Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08A, complete sequence	53675-53704	8	0.733
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	NZ_CP023393	Lactococcus raffinolactis strain WiKim0068 plasmid pWiKim0068-1, complete sequence	30092-30121	8	0.733
NZ_MCHS01000037_1	1.4\|7297\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7297-7326	30	CP007644	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence	281290-281319	9	0.7
NZ_MCHS01000037_1	1.5\|7363\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7363-7392	30	NZ_KX426232	Acinetobacter lwoffii strain VS15 plasmid pALWVS1.1, complete sequence	22389-22418	9	0.7
NZ_MCHS01000037_1	1.5\|7363\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7363-7392	30	NZ_AP019742	Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA2, complete sequence	70745-70774	9	0.7
NZ_MCHS01000037_1	1.5\|7363\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7363-7392	30	NZ_CP021429	Acinetobacter pittii strain HUMV-6483 plasmid p11, complete sequence	74538-74567	9	0.7
NZ_MCHS01000037_1	1.5\|7363\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7363-7392	30	NZ_CP026416	Acinetobacter sp. ACNIH2 plasmid pACI-3569, complete sequence	109524-109553	9	0.7
NZ_MCHS01000037_1	1.5\|7363\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7363-7392	30	NZ_CP030755	Acinetobacter schindleri strain H3 plasmid unnamed1, complete sequence	72832-72861	9	0.7
NZ_MCHS01000037_1	1.5\|7363\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7363-7392	30	NZ_CP015616	Acinetobacter schindleri strain ACE plasmid p1AsACE, complete sequence	85394-85423	9	0.7
NZ_MCHS01000037_1	1.5\|7363\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7363-7392	30	NZ_CP026426	Acinetobacter sp. ACNIH1 plasmid pACI-df08, complete sequence	105891-105920	9	0.7
NZ_MCHS01000037_1	1.5\|7363\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7363-7392	30	NZ_CP051209	Acinetobacter sp. NEB149 plasmid pMsp179, complete sequence	83988-84017	9	0.7
NZ_MCHS01000037_1	1.5\|7363\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7363-7392	30	NZ_CP032102	Acinetobacter lwoffii strain EK30A plasmid pALWEK1.1, complete sequence	23402-23431	9	0.7
NZ_MCHS01000037_1	1.6\|7429\|31\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7429-7459	31	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	129665-129695	9	0.71
NZ_MCHS01000037_1	1.6\|7429\|31\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7429-7459	31	HM144387	Bacillus phage W.Ph., complete genome	65600-65630	9	0.71
NZ_MCHS01000037_1	1.13\|7892\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7892-7921	30	NZ_CP034542	Brevibacillus sp. SCSIO 07484 plasmid unnamed, complete sequence	14311-14340	9	0.7
NZ_MCHS01000037_1	1.14\|7958\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	7958-7987	30	JF270478	Psychrobacter phage Psymv2, complete genome	10914-10943	9	0.7
NZ_MCHS01000037_1	1.19\|8288\|30\|NZ_MCHS01000037\|CRISPRCasFinder,CRT,PILER-CR	8288-8317	30	NZ_CP034167	Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-3, complete sequence	117743-117772	9	0.7

1. spacer 1.9|7628|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 0, identity: 1.0

caaccatttgaatccaacgactaatatagc	CRISPR spacer
caaccatttgaatccaacgactaatatagc	Protospacer
******************************

2. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 0, identity: 1.0

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatacaggttaggaagtaaactccttgta	Protospacer
******************************

3. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 0, identity: 1.0

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatacaggttaggaagtaaactccttgta	Protospacer
******************************

4. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

5. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to FW590615 (JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

6. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to HI504184 (Sequence 26 from Patent EP2147092) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

7. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to AJ417489 (bacteriophage U153 int gene for U153 integrase) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

8. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

9. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

10. spacer 1.21|8420|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 0, identity: 1.0

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattgtttatcttctcccaaataaaatca	Protospacer
******************************

11. spacer 1.21|8420|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattgtttatcttctcccaaataaaatca	Protospacer
******************************

12. spacer 1.2|7165|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.967

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcagtgacaacaacagcaccatccatt	Protospacer
***********************.******

13. spacer 1.2|7165|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.967

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcagtgacaacaacagcaccatccatt	Protospacer
***********************.******

14. spacer 1.11|7760|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.967

gatgccgcagcatatatatttaattgagct	CRISPR spacer
gatgccgcagcgtatatatttaattgagct	Protospacer
***********.******************

15. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 1, identity: 0.967

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacttcaacgttagggctttttttatgcaa	Protospacer
***.**************************

16. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to FW590615 (JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME) position: , mismatch: 1, identity: 0.967

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacttcaacgttagggctttttttatgcaa	Protospacer
***.**************************

17. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to HI504184 (Sequence 26 from Patent EP2147092) position: , mismatch: 1, identity: 0.967

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacttcaacgttagggctttttttatgcaa	Protospacer
***.**************************

18. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to AJ417489 (bacteriophage U153 int gene for U153 integrase) position: , mismatch: 1, identity: 0.967

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacttcaacgttagggctttttttatgcaa	Protospacer
***.**************************

19. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.967

aacctcaacgttagggctttttttatgcaa-	CRISPR spacer
aacctcaacgttagggc-ttttttatgcaaa	Protospacer
***************** ************

20. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

21. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

22. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

23. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

24. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

25. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

26. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

27. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

28. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KJ668715 (Listeria phage LMTA-34, partial genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

29. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

30. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

31. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

32. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.967

cttaaagttgtcaacttctattttttatat-	CRISPR spacer
cttaaagttgtcaacttcta-tttttatata	Protospacer
******************** *********

33. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 2, identity: 0.933

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacctcactgttagggctttttttatgcaa	Protospacer
******* .*********************

34. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.933

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacctcgccgttagggctttttttatgcaa	Protospacer
******. **********************

35. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 2, identity: 0.933

-aacctcaacgttagggctttttttatgcaa	CRISPR spacer
taaccac-acgttagggctttttttatgcaa	Protospacer
 **** * ***********************

36. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 2, identity: 0.933

aacctcaacgttagggctttttttatgcaa-	CRISPR spacer
aacctcaccgttagggc-ttttttatgcaaa	Protospacer
******* ********* ************

37. spacer 1.15|8024|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 2, identity: 0.933

acacagcaagcccactagtttcggatttta	CRISPR spacer
atacagcaaggccactagtttcggatttta	Protospacer
*.******** *******************

38. spacer 1.15|8024|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.933

acacagcaagcccactagtttcggatttta	CRISPR spacer
atacagcaagaccactagtttcggatttta	Protospacer
*.******** *******************

39. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

40. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

41. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

42. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

43. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

44. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

45. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

46. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

47. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KJ535721 (Listeria phage List-36, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

48. spacer 1.18|8222|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to FJ147490 (Listeria phage 20422-1 unknown genes) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

49. spacer 1.2|7165|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 3, identity: 0.9

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcggtgacaacaacagcaccatccact	Protospacer
*****.*****************.****.*

50. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 3, identity: 0.9

aacctcaacgttagggc-tttttttatgcaa	CRISPR spacer
aacctcgccgttagggcttttttttatgca-	Protospacer
******. ********* ************

51. spacer 1.21|8420|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 3, identity: 0.9

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattgtttattttctcccagataaaatcg	Protospacer
***********.********.********.

52. spacer 1.15|8024|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 4, identity: 0.867

acacagcaagcccactagtttcggatttta	CRISPR spacer
atacagcaagaccactagtttctgatttca	Protospacer
*.******** *********** *****.*

53. spacer 1.8|7562|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 5, identity: 0.833

atttatgtgaatttagtgatgaatggcaga	CRISPR spacer
atttacgtgaatttagtgatgaataatcga	Protospacer
*****.******************... **

54. spacer 1.8|7562|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 5, identity: 0.833

atttatgtgaatttagtgatgaatggcaga	CRISPR spacer
atttacgtgaatttagtgatgaataatcga	Protospacer
*****.******************... **

55. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 5, identity: 0.833

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
taacccaccgttagggctttttttatgaaa	Protospacer
 * *.** ******************* **

56. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 5, identity: 0.833

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
taacccaccgttagggctttttttatgaaa	Protospacer
 * *.** ******************* **

57. spacer 1.16|8090|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KJ094028 (Listeria phage LP-083-1 contig 2, partial genome) position: , mismatch: 5, identity: 0.833

atgaaagagcattcagactttggaaaaacg	CRISPR spacer
accatcgagcgttcagactttggaaaaacg	Protospacer
*. *  ****.*******************

58. spacer 1.16|8090|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to DQ003641 (Listeria phage P35, complete genome) position: , mismatch: 5, identity: 0.833

atgaaagagcattcagactttggaaaaacg	CRISPR spacer
accatcgagcgttcagactttggaaaaacg	Protospacer
*. *  ****.*******************

59. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026684 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM2, complete sequence) position: , mismatch: 5, identity: 0.833

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaaattttcaacttctattttttctct	Protospacer
 *****.** **************** * *

60. spacer 1.2|7165|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MH823906 (Citrobacter phage Maroon, complete genome) position: , mismatch: 6, identity: 0.8

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcagttacaacagcagcaccgaaactt	Protospacer
******** ******.********    **

61. spacer 1.2|7165|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to LC589952 (Enterobacter phage vB_EkoM5VN DNA, complete genome) position: , mismatch: 6, identity: 0.8

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcagttacaacagcagcaccgaaactt	Protospacer
******** ******.********    **

62. spacer 1.2|7165|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KX431560 (Cronobacter phage vB_CsaM_leN, complete genome) position: , mismatch: 6, identity: 0.8

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcagttacaacagcagcaccgaaactt	Protospacer
******** ******.********    **

63. spacer 1.2|7165|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KT381880 (Citrobacter phage Margaery, complete genome) position: , mismatch: 6, identity: 0.8

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcagttacaacagcagcaccgaaactt	Protospacer
******** ******.********    **

64. spacer 1.2|7165|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_048645 (Cronobacter phage vB_CsaM_leB, complete genome) position: , mismatch: 6, identity: 0.8

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcagttacaacagcagcaccgaaactt	Protospacer
******** ******.********    **

65. spacer 1.9|7628|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to CP021182 (Sphingomonas wittichii DC-6 plasmid pDC01, complete sequence) position: , mismatch: 6, identity: 0.8

caaccatttgaatccaacgactaatatagc	CRISPR spacer
caatcatttcaatccaacgactattgtgac	Protospacer
***.***** ************* *.*..*

66. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to X85009 (Bacteriophage A500 hol500 and ply500 genes) position: , mismatch: 6, identity: 0.8

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
tttataaacattagggctttttttatgcaa	Protospacer
  . * ***.********************

67. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 6, identity: 0.8

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
tttataaacattagggctttttttatgcaa	Protospacer
  . * ***.********************

68. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KT207918 (Bacillus phage Eyuki, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactattttttaagg	Protospacer
 ***** ********* ********** .

69. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_031054 (Bacillus phage DirtyBetty, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactattttttaagg	Protospacer
 ***** ********* ********** .

70. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031070 (Bacillus sp. JAS24-2 plasmid pl278, complete sequence) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cctcattatgtcaatttctattttttatat	Protospacer
*.* *   ******.***************

71. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MH538193 (Bacillus phage Saddex, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaaggt	Protospacer
 ***** ********* ******** * .*

72. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MF288919 (Bacillus phage AaronPhadgers, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaaggt	Protospacer
 ***** ********* ******** * .*

73. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MG763894 (Bacillus phage HonestAbe, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaaggt	Protospacer
 ***** ********* ******** * .*

74. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_031116 (Bacillus phage Zuko, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaaggt	Protospacer
 ***** ********* ******** * .*

75. spacer 1.4|7297|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031445 (Acinetobacter baumannii strain MDR-UNC plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

76. spacer 1.4|7297|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040426 (Acinetobacter baumannii strain PB364 plasmid pPB364_1, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

77. spacer 1.4|7297|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029570 (Acinetobacter baumannii strain DA33098 plasmid pDA33098-108, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

78. spacer 1.4|7297|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027122 (Acinetobacter baumannii strain AR_0056 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

79. spacer 1.4|7297|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027608 (Acinetobacter baumannii strain AR_0102 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

80. spacer 1.4|7297|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026705 (Acinetobacter baumannii strain AR_0056 plasmid tig00000058_pilon, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

81. spacer 1.4|7297|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035046 (Acinetobacter baumannii strain ABUH793 plasmid p107.0Kbp, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

82. spacer 1.4|7297|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MK504446 (Lactobacillus phage SAC12B, complete genome) position: , mismatch: 7, identity: 0.767

caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
cagcacagggaacgtatcttcattgtcgga	Protospacer
**. .. ******* ****** ********

83. spacer 1.5|7363|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_021559 (Prochlorococcus phage P-SSM3 genomic sequence) position: , mismatch: 7, identity: 0.767

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
gaactttttctttgtgtaggtgattttggc	Protospacer
*  .******** *************.*..

84. spacer 1.6|7429|31|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012367 (Enterococcus durans strain KLDS 6.0933 plasmid unnamed 1, complete sequence) position: , mismatch: 7, identity: 0.774

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
gtgcttctgccatctttcatcatcctttatt	Protospacer
 **.*  **.***.****************

85. spacer 1.6|7429|31|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012385 (Enterococcus durans strain KLDS 6.0930 plasmid unnamed 1, complete sequence) position: , mismatch: 7, identity: 0.774

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
gtgcttctgccatctttcatcatcctttatt	Protospacer
 **.*  **.***.****************

86. spacer 1.8|7562|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_019274 (Psychrobacter sp. DAB_AL62B plasmid pP62BP1, complete sequence) position: , mismatch: 7, identity: 0.767

atttatgtgaatttagtgatgaatggcaga	CRISPR spacer
atttatgtaaatttagtgatgaagattatg	Protospacer
********.************** . .* .

87. spacer 1.8|7562|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018257 (Calothrix sp. NIES-4071 plasmid plasmid2 DNA, complete genome) position: , mismatch: 7, identity: 0.767

atttatgtgaatttagtgatgaatggcaga	CRISPR spacer
atttatctgaatttattgatgaaatatagt	Protospacer
****** ******** *******  ..**

88. spacer 1.8|7562|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MT254578 (Bacillus phage Izhevsk, complete genome) position: , mismatch: 7, identity: 0.767

atttatgtgaatttagtgatgaatggcaga	CRISPR spacer
atttaggtgaatttagagatgaaagtttca	Protospacer
***** ********** ****** * .  *

89. spacer 1.16|8090|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH113855 (Vibrio alginolyticus strain Vb1796 plasmid pVb1796, complete sequence) position: , mismatch: 7, identity: 0.767

atgaaagagcattcagactttggaaaaacg	CRISPR spacer
aagcaagagcattcagactttgaaagagtt	Protospacer
* * ******************.**.*..

90. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KX961629 (Bacillus phage BJ4, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

91. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_031070 (Bacillus phage Nemo, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

92. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MF288920 (Bacillus phage Zainny, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

93. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KJ489399 (Bacillus phage Hakuna, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

94. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_031027 (Bacillus phage SageFayge, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

95. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KX349902 (Bacillus phage Kida, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

96. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KX156152 (Bacillus phage Smudge, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

97. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KJ489401 (Bacillus phage Megatron, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

98. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MN038179 (Bacillus phage ALPS, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

99. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MH638311 (Bacillus phage OmnioDeoPrimus, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

100. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MF288918 (Bacillus phage Bubs, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

101. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to KX961632 (Bacillus phage SBP8a, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

102. spacer 1.21|8420|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to MG592459 (Vibrio phage 1.084.O._10N.261.49.F5, partial genome) position: , mismatch: 7, identity: 0.767

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tattcatttatctcctcctaaataaaatcc	Protospacer
*  *..*******.****.**********

103. spacer 1.4|7297|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 8, identity: 0.733

caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ggtaatcgggaaccgatcttccttggcgat	Protospacer
 . *.******** *********** **.

104. spacer 1.5|7363|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NC_015156 (Vibrio nigripulchritudo plasmid VIBNI_pA, complete genome) position: , mismatch: 8, identity: 0.733

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
acggcaattcttggtgcaggtgattttgat	Protospacer
.*  .  *********.*********.***

105. spacer 1.6|7429|31|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031070 (Bacillus sp. JAS24-2 plasmid pl278, complete sequence) position: , mismatch: 8, identity: 0.742

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
tctctaatttcatttttcatcatccttgtaa	Protospacer
*. .**** ******************   .

106. spacer 1.6|7429|31|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to AP013449 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C66A-MedDCM-OCT-S35-C82) position: , mismatch: 8, identity: 0.742

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
ttattaatgtcttttttcatcatgccgctcg	Protospacer
**.******** *********** *. . .*

107. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016726 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08A, complete sequence) position: , mismatch: 8, identity: 0.733

cttaaagttgtcaacttctattttttatat	CRISPR spacer
tatcttgttctcaccttctattttttataa	Protospacer
. *   *** *** ***************

108. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023393 (Lactococcus raffinolactis strain WiKim0068 plasmid pWiKim0068-1, complete sequence) position: , mismatch: 8, identity: 0.733

cttaaagttgtcaacttctattttttatat	CRISPR spacer
tatcttgttctcaccttctattttttataa	Protospacer
. *   *** *** ***************

109. spacer 1.4|7297|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 9, identity: 0.7

caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ggtgatcgggaaccgatcttccttggcgat	Protospacer
 . ..******** *********** **.

110. spacer 1.5|7363|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX426232 (Acinetobacter lwoffii strain VS15 plasmid pALWVS1.1, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

111. spacer 1.5|7363|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019742 (Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA2, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

112. spacer 1.5|7363|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021429 (Acinetobacter pittii strain HUMV-6483 plasmid p11, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

113. spacer 1.5|7363|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026416 (Acinetobacter sp. ACNIH2 plasmid pACI-3569, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

114. spacer 1.5|7363|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030755 (Acinetobacter schindleri strain H3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

115. spacer 1.5|7363|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015616 (Acinetobacter schindleri strain ACE plasmid p1AsACE, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

116. spacer 1.5|7363|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026426 (Acinetobacter sp. ACNIH1 plasmid pACI-df08, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

117. spacer 1.5|7363|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051209 (Acinetobacter sp. NEB149 plasmid pMsp179, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

118. spacer 1.5|7363|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032102 (Acinetobacter lwoffii strain EK30A plasmid pALWEK1.1, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

119. spacer 1.6|7429|31|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 9, identity: 0.71

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
ctgttaatgtcctttttcatcgtctgcttct	Protospacer
.********** *********.**. .* .

120. spacer 1.6|7429|31|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to HM144387 (Bacillus phage W.Ph., complete genome) position: , mismatch: 9, identity: 0.71

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
cttgacttgccattattcatcatcctttatc	Protospacer
.*     **.**** ***************

121. spacer 1.13|7892|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034542 (Brevibacillus sp. SCSIO 07484 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

aatggtgaatgcgttgaagaaggaggaact	CRISPR spacer
ggccgtgaatgcgttgatgaaggaggcggc	Protospacer
... ************* ******** . .

122. spacer 1.14|7958|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to JF270478 (Psychrobacter phage Psymv2, complete genome) position: , mismatch: 9, identity: 0.7

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
ttatctaacgatagggctttttttatgcct	Protospacer
   ...**** *****************

123. spacer 1.19|8288|30|NZ_MCHS01000037|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034167 (Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-3, complete sequence) position: , mismatch: 9, identity: 0.7

cttaaagttgtcaacttctattttttatat	CRISPR spacer
agaggagttgtcaaattctatttttttatt	Protospacer
   ..********* ***********   *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

26. NZ_MCHS01000030

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_MCHS01000030_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_MCHS01000030_1

123766-124350

Orphan

Consensus_repeat	Method
GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	CRT

7 spacers

The CRISPR arrays of NZ_MCHS01000030_1

>merge|NZ_MCHS01000030|1|123766-124350|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATGTGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTGGATGTAAGTCATTTTGATACGAGTTCAGTAACTAATATGTCTTACATGTTTTATGATAATAGAAACCTTGAGGTGCTGGATGTAAGCAACCTTGATACCGGTTCAGTAACTAATATGTATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTGGATGTAAGTAATTTTGATACGAGTTCAGTAACTGATATGTATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTAGATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATGGTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTGGATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATGCGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTAGATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATGGCTGCCATGTTTTCTGATAATGAAAAACTGGAGAAGCTTGATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

>NZ_MCHS01000030|1|1|123766-124350|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATG	TGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTG
GATGTAAGTCATTTTGATACGAGTTCAGTAACTAATATG	TCTTACATGTTTTATGATAATAGAAACCTTGAGGTGCTG
GATGTAAGCAACCTTGATACCGGTTCAGTAACTAATATG	TATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTG
GATGTAAGTAATTTTGATACGAGTTCAGTAACTGATATG	TATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTA
GATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATG	GTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTG
GATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATG	CGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTA
GATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATG	GCTGCCATGTTTTCTGATAATGAAAAACTGGAGAAGCTT
GATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_MCHS01000030.1\|WP_015455545.1\|116621_118172_+\|hydantoinase/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223223
NZ_MCHS01000030.1\|WP_077418270.1\|120936_122973_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_MCHS01000030.1\|WP_003721239.1\|107231_107987_-\|DUF4866-family-protein	unknown	unknown	gnl\|CDD\|379782
NZ_MCHS01000030.1\|WP_031669983.1\|128086_129115_+\|LXG-domain-containing-protein	unknown	unknown	gnl\|CDD\|368093
NZ_MCHS01000030.1\|WP_031669159.1\|126249_126555_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NZ_MCHS01000030.1\|WP_003728991.1\|115528_116629_+\|DUF917-domain-containing-protein	unknown	unknown	gnl\|CDD\|226065
NZ_MCHS01000030.1\|WP_015454184.1\|125243_125717_+\|hypothetical-protein	unknown	unknown	unknown
NZ_MCHS01000030.1\|WP_031669155.1\|108103_110263_-\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NZ_MCHS01000030.1\|WP_009925652.1\|112515_114111_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NZ_MCHS01000030.1\|WP_070784957.1\|127721_128090_+\|ribonuclease-P	unknown	unknown	unknown
NZ_MCHS01000030.1\|WP_015454177.1\|111412_112360_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_MCHS01000030.1\|WP_015454185.1\|125736_126222_+\|hypothetical-protein	unknown	unknown	unknown
NZ_MCHS01000030.1\|WP_015454176.1\|110259_111408_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_MCHS01000030.1\|WP_003721244.1\|114244_115528_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NZ_MCHS01000030.1\|WP_031669156.1\|118799_120338_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|368260
NZ_MCHS01000030.1\|WP_003733328.1\|126630_126897_+\|hypothetical-protein	unknown	unknown	unknown
NZ_MCHS01000030.1\|WP_003721256.1\|127436_127721_+\|DUF3130-domain-containing-protein	unknown	unknown	gnl\|CDD\|288220

Protein	Function_ID	Function_description	E-value
NZ_MCHS01000030.1\|WP_015455545.1\|116621_118172_+\|hydantoinase/oxoprolinase-family-protein	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	2.41284e-105
NZ_MCHS01000030.1\|WP_077418270.1\|120936_122973_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	4.4286e-32
NZ_MCHS01000030.1\|WP_003721239.1\|107231_107987_-\|DUF4866-family-protein	gnl\|CDD\|379782	pfam16160, DUF4866, Domain of unknown function (DUF4866). This family consists of uncharacterized proteins around 250 residues in length and is mainly found in various human gut Firmicute species and abundant in human gut metagenomic datasets. The function of this family is unknown.	1.0462e-120
NZ_MCHS01000030.1\|WP_031669983.1\|128086_129115_+\|LXG-domain-containing-protein	gnl\|CDD\|368093	pfam04740, LXG, LXG domain of WXG superfamily. This domain is present is the N-terminal region of a group of polymorphic toxin proteins in bacteria. It is predicted to use Type VII secretion pathway to mediate export of bacterial toxins.	3.17541e-34
NZ_MCHS01000030.1\|WP_003728991.1\|115528_116629_+\|DUF917-domain-containing-protein	gnl\|CDD\|226065	COG3535, COG3535, Uncharacterized conserved protein [Function unknown].	0
NZ_MCHS01000030.1\|WP_031669159.1\|126249_126555_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	1.60706e-05
NZ_MCHS01000030.1\|WP_009925652.1\|112515_114111_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.65795e-59
NZ_MCHS01000030.1\|WP_015454177.1\|111412_112360_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	5.42287e-102
NZ_MCHS01000030.1\|WP_031669155.1\|108103_110263_-\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	1.96033e-27
NZ_MCHS01000030.1\|WP_015454176.1\|110259_111408_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	2.26435e-52
NZ_MCHS01000030.1\|WP_003721244.1\|114244_115528_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	6.12636e-95
NZ_MCHS01000030.1\|WP_031669156.1\|118799_120338_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	1.01277e-18
NZ_MCHS01000030.1\|WP_003721256.1\|127436_127721_+\|DUF3130-domain-containing-protein	gnl\|CDD\|288220	pfam11328, DUF3130, Protein of unknown function (DUF3130. This bacterial family of proteins has no known function.	4.16867e-42

>NZ_MCHS01000030.1|WP_077418270.1|120936_122973_+|BspA-family-leucine-rich-repeat-surface-protein
MFGNVPSSKPSAWNGYLNRINHIEIEEATLTGDFESYFRSNVFLALESVRIERSNLSGVTSFANAFYASRAEKIIIKDNDYPTASSLLTTENMFKYCSSLTELDVSGLDTSAVTNMTEMFYGCNALKELDASNFDTSSVTDMNSMFISCSALEKLDVSNFDTSSVTDMNSMFRGCSALKKLDASNFDTSSVTNMNNMFFACASLEELNASNFDTSSVTDMNSMFRYCNKLKKLDISNFDTSSVTDMNSMFRTCSALERVDVSNFDTSSVTDMNRMFDECKSLEILDVSNFDTNSVTDMGYMFYENEKLKKLDLSNFDTSSVTDMSFMFFQCTGLEELDVSNFDTNSVTNMSYMFYKCAGLEELDLSNFDTSSVTDMSFMFFQSTGLKKLDLSNFDTSSVTNMSYMFATCTALKSLYLDNFTDVSGGTVNMFIETSSLTYLFVSHNFKDFSGLENTNWYDEKNWAQFTNRSELQTYHQKQIEPTGYRKGVFHSLTMDAMGGQFDDAEEQKVQNKVPGDYWEEMIPVKEDYYFDGWYVDQDFTSKFDFSMPATASTTIYAKWIENYTVVIPASISLNETSELKVEGINRGSKTLSVGLNRTATSISESNELTLAHAADTTIQCLAPLSWDGSENNPKNAILTLAPGSEITEGDAVMDIEAPEDIQAGKYTGNLVFSIKYE
>NZ_MCHS01000030.1|WP_031669156.1|118799_120338_+|helix-turn-helix-domain-containing-protein
MREYLDSKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKEFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLSSFPNLQALAKKVHVSYSGIKKEIKELNEELSERNLYISTGNQVEITGDEFSLRIFYAFLFLVAYSGDRWPFSFVRYDEITDLLESCPKEIYRADSIDKAMMIHYYVAMHLLRDRMNCHIDTTRQFKVALYKACTEESKKSESAFIKKVAKQLPNRNYKEITYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASERVNDNLSIPFSEKEMELLRYSFASINYRYFLLDNLINKFNNIVPGYTDLDRNIRKIHKVNHLEPLISQLVNLKEMRLLKPFEERLASDYLIILDKRIDFSIHTLPIKVTILSTISNETAVFDFMRYFSSYYNLEIINQVDTVVDLYISDFSVSPEVLTSLRINQPIVYVNTRWLESDYVKINDNLAKIARKKFIANKKD
>NZ_MCHS01000030.1|WP_015455545.1|116621_118172_+|hydantoinase/oxoprolinase-family-protein
MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESLHRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPEDMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKNDQELAVQKIIEEELGADIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKALEQEGIEHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDVGGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSIVREKDGDIIIGPDSVGYRISEEALVFGGKTMTTTDIAVRLGMAEIGNPELVAHIPTDFAEKAYKKIADMTEDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQYEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLRVKVVGNLV
>NZ_MCHS01000030.1|WP_003728991.1|115528_116629_+|DUF917-domain-containing-protein
MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPIKLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPMEAGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIGIMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRETSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTDSEVIVHFQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTDKGIETVGPRYFGYDVDFEPLEELVKKEERRHV
>NZ_MCHS01000030.1|WP_003721244.1|114244_115528_+|cytosine-permease
MTEKKTVEQAQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWEAILIALLGYGVIVVFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGWFGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPILLFVCIYGLVVSLNNGGLAVVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKSRKDVVKAAIVGILPSGVLMIAVGAILALTAGTADISVVFTNLGLPVLGIIGLILAAWTTNAVNAFSGGIAIINVFNISEKYHKVAVAIAGGLGTVLAVIGILNHFVPIMSVLSAMVPPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVTSWLVGAVIAGIPVILTFFPALPQLPNQPLIGIILSLAVYLVGAKVLSGKTNNVENLEGK
>NZ_MCHS01000030.1|WP_009925652.1|112515_114111_+|PucR-family-transcriptional-regulator
MSVKLADLMKLPSLKEARVVSGKSGLSKLVSSISVLEYTEVALLEDDLFDNDEFYGSEIVVSAFVNIREDVEAQCRTIERLHKVGEVALILYYVGIFVPKIDQKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSVRPPQRNIDTTLKILSDRTHSSLVLTDNSFQVINSITWPRTRHWDFERVIETSKQIDEHELVQLHLDERDFYTARKPIFQDGMQAMHLFMMKEKGALTADVVMQITEVVQVFMNLWGRNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRNNEQVLAELKSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQGMAQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMRPLKSLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKIPESYNLYLAVAIRRLLGGNNNNK
>NZ_MCHS01000030.1|WP_015454177.1|111412_112360_-|MoxR-family-ATPase
MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLEDVPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGNIVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALPEAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFIDDVLKNYIIRLVNATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLAPYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR
>NZ_MCHS01000030.1|WP_015454176.1|110259_111408_-|DUF58-domain-containing-protein
MLKKRLLLAFRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFILLLLFLSSIYPLKAWKVNRSFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQIIPATFGKVRARQQVVYPLFKKQFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSEKSLTIYPTYFPNVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKSSAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEENGEIRVTLLGDQTSKFAPAKGTSRLQDISTAFAEIAPVDSLTLQESLDSNLHSGEKILLFTPCMDTMLMQKVTRLTDNKQLQIITFQSEHSKAMDAPAIFLEQASLLSRWERETK
>NZ_MCHS01000030.1|WP_031669155.1|108103_110263_-|transglutaminase
MKRYLTLVMLFILSVLLISEWIYPFAELTELSTATWIILFITLSLGSFFLRLKYYWTIPLHVVMIIIVSGIYYAKGGILAGNWLGSFFQITFNGFRDMVQFRSSDISMDFILIVFLIALWLLSYITTYSILCKHRIMSVLVLTVAYLAVINTFTDYNSNWAIVRTVLEGFLLLHLALASRIATPNRISADSLKRNGLFYHGFVILLLAVFVFSSLILPKKAPIFPDPVPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRVESKTVYTGTGWANANSGDVISFSSGDNFPIQLTEQTTGATNTAEISFASSSDYMPYPYGTQAVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVSQYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIESYLSTSGTFTYSTDDAKETPMGADYVDQFLFETQIGYCDNFSTSMVVMLRTLGIPARWAKGYTPGDGEKKENDAKTTYTITNNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNTPENTPEQNNGSNSTGETPKKEEPKTETAASNFEIPSWVWWIPAGLVVALLALVIIFRRRIRSYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFGTRVDAELTATEFSRLTKMYEAQVYSNNFTEKVITAEETQLVQQVIARLTK
>NZ_MCHS01000030.1|WP_003721239.1|107231_107987_-|DUF4866-family-protein
MTTIFPKEQNVTPLFEQILANPTACRRFKDVFLDNLESYQETRGFEKDDTLFAKIILSAYRQSDVSALLLGVCGRTLFELLRQAFLIPKKLTVDNPFFLTDKEGNFIAKKDDISNREQEKFQEIYQSDLHHSETTIFLVDDDDIVHSYEPDFSISTKRINKKRGILVLYSLPNTLKLEMTESEVYAFIWKTFLHIQEIIPSSRIFYGQETSENADELGVFLPIHHFEKKMLQNIEQVNELVDALREQMVNK
>NZ_MCHS01000030.1|WP_015454184.1|125243_125717_+|hypothetical-protein
MKKKRVVVISLLLLLVSVIGISSYFLFKDKINLLDVDPSAVEWNGKKQKDTSGEENTIAIPGFEKVTLYANETKQAVNFHNPEINDCYFKISLIHPDGSVLWISDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NZ_MCHS01000030.1|WP_015454185.1|125736_126222_+|hypothetical-protein
MNKLVLSTLSVAAMGMVFFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELQRVGATSDVITSSFKSNNSTVTMANPVIGSFSGYAIEETEVSKIQIGSPQGDKKAGAYQTTLTFTAAFK
>NZ_MCHS01000030.1|WP_031669159.1|126249_126555_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKRKLVLAMVLISFCGMFFLSPDRVQASQTVVEVLISEDDLDVSEENIQEIPKKELAASSDKDNKQHTLPKAGDTVTNYTLLGLVLILIWLIMQRKRKKKE
>NZ_MCHS01000030.1|WP_003733328.1|126630_126897_+|hypothetical-protein
MARIEYGEEIQKSLLVLYSRGSTIDSICKEYGIPRYEFHKWMKLHDSDKLETKEVETFLQIRELKQQKNKLEEEILFLNEAINLLESP
>NZ_MCHS01000030.1|WP_003721256.1|127436_127721_+|DUF3130-domain-containing-protein
MREIKVDERTFQQHATKLASESTGSYLPLKNGNMAYSRANSIDQLRSALIELVDVVEDFQHVTKKDASRLKKMGIAYAKQDQLMGQKINQLEVR
>NZ_MCHS01000030.1|WP_070784957.1|127721_128090_+|ribonuclease-P
MDSAHSQLEQQLQQIKKAKITAETDADQTRRKQNEQDWLEEDSNQLTQEKLVLLDFLRSGWQGEEASGFHRYLEEQQHEESQAWRRDLQDKRADLDTELQENKDKLHTLETKQATLQKEWSK
>NZ_MCHS01000030.1|WP_031669983.1|128086_129115_+|LXG-domain-containing-protein
MSRIDIAELNDFLHGLRSSNAEAKEMIRKIKEAAIDYAQDNSLKGEAVTTSKRYFKSTYTSICQSIIEALDESEERLAQYIREFGSQVDSSPSARIDAEILQEAMAKVSQLQRKEEDLHRQLTAPNTKPDMQQVYVVKSRSIHTQLLKAIEQENILEKYLAFEQSHGQFFSALDELIRATARAVQELLHHVSFNDKTGTYSVPKSAANSLLLMKKALDNARTENDKDPFPKAFEDYTVLAYTYVNDQGETVTMWLLEKDGKRVENKELQDFLEKHGQELDPLLYTNLSGEELERKVNDSWKEGINYLNGQKVSGVSGATLRSSAYVASMKDWTDDAGLMDMAL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage