CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Prophage number	Anti-CRISPR protein number
NZ_PEPN01000067	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_22_length_9613_cov_73.2993_ID_43, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000028	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_28_length_2776_cov_4202.4_ID_55, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000034	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_49_length_365_cov_45.9677_ID_97, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000039	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_34_length_1405_cov_62.1193_ID_67, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000038	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_51_length_358_cov_124.462_ID_101, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000002	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_39_length_723_cov_165.434_ID_77, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000001	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_66_length_244_cov_247.693_ID_131, whole genome shotgun sequence	1 crisprs	NA	1	0	0
NZ_PEPN01000057	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_12_length_84477_cov_72.144_ID_23, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000031	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_55_length_314_cov_214.687_ID_109, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000009	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_1_length_483052_cov_73.2381_ID_1, whole genome shotgun sequence	0 crisprs	cas3,DEDDh,csa3,DinG	0	1	1
NZ_PEPN01000063	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_9_length_104226_cov_75.1018_ID_17, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_PEPN01000051	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_68_length_234_cov_274.425_ID_135, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000059	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_10_length_94108_cov_80.1758_ID_19, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000050	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_35_length_1290_cov_162.697_ID_69, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000046	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_6_length_163911_cov_76.1438_ID_11, whole genome shotgun sequence	0 crisprs	cas3	0	1	0
NZ_PEPN01000052	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_44_length_528_cov_167.304_ID_87, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000007	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_4_length_192499_cov_78.2941_ID_7, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_PEPN01000023	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_2_length_304544_cov_75.7265_ID_3, whole genome shotgun sequence	0 crisprs	WYL	0	1	0
NZ_PEPN01000016	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_13_length_71144_cov_85.0901_ID_25, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000060	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_7_length_125415_cov_70.5697_ID_13, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	0
NZ_PEPN01000069	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_3_length_292777_cov_81.008_ID_5, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000047	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_42_length_564_cov_140.151_ID_83, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000065	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_60_length_292_cov_226.654_ID_119, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000055	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_17_length_40131_cov_82.2252_ID_33, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000066	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_57_length_303_cov_176.952_ID_113, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000030	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_69_length_228_cov_224.861_ID_137, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000026	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_14_length_63887_cov_73.9175_ID_27, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000024	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_47_length_378_cov_280.693_ID_93, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000040	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_30_length_2543_cov_68.1234_ID_59, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000045	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_54_length_325_cov_8290.41_ID_107, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000058	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_27_length_2902_cov_54.1528_ID_53, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000010	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_53_length_349_cov_236.724_ID_105, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000062	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_32_length_1695_cov_442.408_ID_63, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000029	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_67_length_241_cov_439.14_ID_133, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000049	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_65_length_244_cov_128.397_ID_129, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000017	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_50_length_364_cov_218.013_ID_99, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000044	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_37_length_814_cov_36.0119_ID_73, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000068	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_31_length_2163_cov_7085.01_ID_61, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000025	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_76_length_215_cov_249.025_ID_151, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000019	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_21_length_14008_cov_108.671_ID_41, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000056	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_56_length_304_cov_6045.83_ID_111, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000053	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_5_length_169506_cov_85.467_ID_9, whole genome shotgun sequence	0 crisprs	WYL	0	0	0
NZ_PEPN01000033	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_52_length_352_cov_78.0875_ID_103, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000036	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_38_length_794_cov_69.9811_ID_75, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000041	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_63_length_274_cov_320.215_ID_125, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000022	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_41_length_604_cov_701.82_ID_81, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000054	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_24_length_7418_cov_84.6875_ID_47, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000042	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_25_length_3396_cov_436.74_ID_49, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000003	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_16_length_46232_cov_67.3039_ID_31, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000011	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_58_length_295_cov_755.479_ID_115, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000006	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_61_length_279_cov_179.732_ID_121, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000015	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_33_length_1435_cov_218.464_ID_65, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000014	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_36_length_824_cov_400.43_ID_71, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000008	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_62_length_274_cov_303.155_ID_123, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000018	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_72_length_220_cov_535.552_ID_143, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000013	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_48_length_369_cov_106.812_ID_95, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000071	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_20_length_16907_cov_51.1436_ID_39, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000012	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_18_length_38423_cov_78.3835_ID_35, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000035	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_23_length_7990_cov_70.4772_ID_45, whole genome shotgun sequence	0 crisprs	WYL	0	1	0
NZ_PEPN01000061	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_71_length_220_cov_46.7939_ID_141, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000032	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_45_length_478_cov_91.1395_ID_89, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000005	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_15_length_61154_cov_84.436_ID_29, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000064	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_64_length_255_cov_309.29_ID_127, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000020	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_46_length_402_cov_255.579_ID_91, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000043	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_11_length_86733_cov_73.8899_ID_21, whole genome shotgun sequence	0 crisprs	NA	0	2	0
NZ_PEPN01000037	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_29_length_2595_cov_96.3004_ID_57, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000021	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_26_length_2926_cov_229.879_ID_51, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000048	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_40_length_657_cov_199.542_ID_79, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000070	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_19_length_17578_cov_76.7817_ID_37, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_PEPN01000004	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_43_length_557_cov_75.4821_ID_85, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PEPN01000027	Staphylococcus pseudintermedius strain 2120306040011 212030604001-1_8_length_105182_cov_86.8541_ID_15, whole genome shotgun sequence	0 crisprs	csa3	0	1	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

382 : 6332

Streptococcus_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000228166.1\|382_1252_+	nucleotidyltransferase domain-containing protein	A0A1X9I6C9	Streptococcus_phage	4.3e-159	95.8
WP_000662263.1\|1232_1967_+	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	1.5e-141	100.0
WP_001255866.1\|1999_2908_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	E4ZFP8	Streptococcus_phage	2.8e-177	100.0
WP_000627290.1\|2904_3447_+	streptothricin N-acetyltransferase Sat4	A0A1B0RXL7	Streptococcus_phage	8.9e-94	100.0
WP_001096887.1\|3539_4334_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	E4ZFP6	Streptococcus_phage	2.3e-154	100.0
WP_001079938.1\|4609_5182_+	HTH domain-containing protein	A0A1B0RXM1	Streptococcus_phage	5.5e-102	99.5
WP_072387101.1\|5154_5562_+	WYL domain-containing protein	A0A1B0RXM3	Streptococcus_phage	1.1e-59	98.3
WP_000802831.1\|5672_6332_+	RibD family protein	A0A1B0RXM8	Streptococcus_phage	3.1e-125	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_PEPN01000001

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CRISPR-Cas detection and classification

Crispr_ID: NZ_PEPN01000001_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_PEPN01000001_1

91-203

Orphan

Consensus_repeat	Method
AGTGCGTCAACATCGACATCGGTATCAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_PEPN01000001_1

>merge|NZ_PEPN01000001|1|91-203|CRISPRCasFinder
AGTGCGTCAACATCGACATCGGTATCAGACAGCACATCAGTTTCATTAAGCAAATCGACAAGCACGTCAACAAGTGACTCAGACAGTGCGTCAACATCAACATCGGTATCAGA

>NZ_PEPN01000001|1|1|91-203|CRISPRCasFinder
AGTGCGTCAACATCGACATCGGTATCAGA	CAGCACATCAGTTTCATTAAGCAAATCGACAAGCACGTCAACAAGTGACTCAGAC
AGTGCGTCAACATCAACATCGGTATCAGA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_PEPN01000001_1	1.1\|120\|55\|NZ_PEPN01000001\|CRISPRCasFinder	120-174	55	NZ_PEPN01000050.1	1119-1173	1.0
NZ_PEPN01000001_1	1.1\|120\|55\|NZ_PEPN01000001\|CRISPRCasFinder	120-174	55	NZ_PEPN01000020.1	231-285	1.0
NZ_PEPN01000001_1	1.1\|120\|55\|NZ_PEPN01000001\|CRISPRCasFinder	120-174	55	NZ_PEPN01000031.1	190-244	1.0

1. spacer 1.1|120|55|NZ_PEPN01000001|CRISPRCasFinder matches to position: 1119-1173, mismatch: 0, identity: 1.0

cagcacatcagtttcattaagcaaatcgacaagcacgtcaacaagtgactcagac	CRISPR spacer
cagcacatcagtttcattaagcaaatcgacaagcacgtcaacaagtgactcagac	Protospacer
*******************************************************

2. spacer 1.1|120|55|NZ_PEPN01000001|CRISPRCasFinder matches to position: 231-285, mismatch: 0, identity: 1.0

cagcacatcagtttcattaagcaaatcgacaagcacgtcaacaagtgactcagac	CRISPR spacer
cagcacatcagtttcattaagcaaatcgacaagcacgtcaacaagtgactcagac	Protospacer
*******************************************************

3. spacer 1.1|120|55|NZ_PEPN01000001|CRISPRCasFinder matches to position: 190-244, mismatch: 0, identity: 1.0

cagcacatcagtttcattaagcaaatcgacaagcacgtcaacaagtgactcagac	CRISPR spacer
cagcacatcagtttcattaagcaaatcgacaagcacgtcaacaagtgactcagac	Protospacer
*******************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_PEPN01000046

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

78739 : 92794

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014613722.1\|78739_79879_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.2e-87	45.5
WP_014613723.1\|79895_80159_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.0e-06	42.9
WP_014613724.1\|80300_82580_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	7.2e-28	32.0
WP_157980217.1\|82696_84982_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.1e-68	29.7
WP_014613726.1\|84993_85512_+	adenine phosphoribosyltransferase	A0A2K9L2N8	Tupanvirus	4.3e-13	31.8
WP_014613727.1\|85868_88058_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1S6L1R3	Vibrio_phage	2.0e-06	38.0
WP_014613728.1\|88070_88523_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_014613729.1\|88519_89395_+	N-acetylmuramoyl-L-alanine amidase	C8CHK8	Thermus_virus	2.5e-05	30.7
WP_014613730.1\|89756_91028_+\|tRNA	histidine--tRNA ligase	A0A2K9L6G5	Tupanvirus	3.2e-17	23.6
WP_014613731.1\|91027_92794_+\|tRNA	aspartate--tRNA ligase	A0A2K9KZX5	Tupanvirus	6.6e-13	31.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_PEPN01000031

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_PEPN01000009

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

427110 : 469009

Staphylococcus_phage(71.74%)

protease,tail,terminase,plate,integrase,portal,capsid,holin

attL 458744:458760|attR 468374:468390

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100006907.1\|427110_427503_-	hypothetical protein	B4XYR0	Lactobacillus_phage	1.6e-31	57.0
WP_100006908.1\|427632_427785_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_100006909.1\|427781_428129_+	hypothetical protein	NA	NA	NA	NA
WP_100006910.1\|428334_429282_-	N-acetylmuramoyl-L-alanine amidase	A0A1P8CMK9	Staphylococcus_phage	7.7e-85	52.4
WP_168434019.1\|429294_429726_-\|holin	phage holin family protein	A0A1S6KVE0	Staphylococcus_phage	7.9e-45	67.7
WP_100006911.1\|429737_431738_-	SGNH/GDSL hydrolase family protein	I6P9N4	Staphylococcus_phage	8.6e-118	44.6
WP_100006912.1\|431808_433080_-\|plate	phage baseplate upper protein	A0A1J0MFQ3	Staphylococcus_phage	1.1e-200	80.6
WP_037542926.1\|433096_434128_-	SGNH/GDSL hydrolase family protein	A0A1J0MFI8	Staphylococcus_phage	9.1e-140	76.9
WP_015729181.1\|434139_434760_-	hypothetical protein	A0A1J0MFD6	Staphylococcus_phage	6.0e-70	61.0
WP_015729182.1\|434766_434967_-	hypothetical protein	A0A1J0MFL4	Staphylococcus_phage	7.4e-06	67.6
WP_100006947.1\|434953_436519_-\|tail	phage tail protein	A0A2I6PDE4	Staphylococcus_phage	3.6e-148	49.3
WP_100006913.1\|436528_437353_-\|tail	phage tail family protein	I1W5Y8	Staphylococcus_phage	1.9e-92	59.7
WP_100006914.1\|437355_442941_-\|tail	phage tail tape measure protein	A0A2I6PDS2	Staphylococcus_phage	0.0e+00	55.1
WP_015729186.1\|442954_443110_-	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	5.0e-10	63.5
WP_100006915.1\|443151_443502_-	hypothetical protein	A0A0K1LKJ0	Staphylococcus_phage	2.7e-27	57.8
WP_015729188.1\|443609_444071_-	Ig domain-containing protein	A0A1J0MFD8	Staphylococcus_phage	2.1e-35	52.0
WP_100006916.1\|444165_444846_-\|tail	phage tail protein	Q9B0D5	Staphylococcus_virus	1.5e-85	75.0
WP_037542910.1\|444885_445281_-	hypothetical protein	A0A2I6PDD8	Staphylococcus_phage	2.2e-49	73.3
WP_037542908.1\|445282_445684_-	hypothetical protein	R4WAN5	Staphylococcus_phage	1.4e-51	77.4
WP_100006917.1\|445680_446043_-	hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	2.8e-19	40.9
WP_015729193.1\|446023_446320_-	hypothetical protein	A0A2H4JAM0	uncultured_Caudovirales_phage	5.3e-16	42.9
WP_100006918.1\|446388_447516_-\|capsid	phage major capsid protein	A0A1W6JPL4	Staphylococcus_phage	7.4e-151	74.1
WP_100006919.1\|447544_448267_-\|protease	Clp protease ClpP	A0A1W6JPK0	Staphylococcus_phage	2.8e-63	50.2
WP_100006920.1\|448256_449411_-\|portal	phage portal protein	A0A075M040	Staphylococcus_phage	3.4e-111	51.7
WP_100006921.1\|449425_451066_-\|terminase	terminase large subunit	A8AT95	Listeria_phage	2.0e-221	67.6
WP_100006922.1\|451062_451362_-\|terminase	P27 family phage terminase small subunit	A0A2H4JBX8	uncultured_Caudovirales_phage	5.1e-19	59.8
WP_015729199.1\|451498_451834_-	HNH endonuclease	D2XR61	Bacillus_phage	3.5e-24	53.6
WP_037542896.1\|452097_452511_-	sigma-70 family RNA polymerase sigma factor	A0A1J0MFD1	Staphylococcus_phage	2.8e-55	79.9
WP_041614853.1\|452635_453079_-	hypothetical protein	C9E2P0	Enterococcus_phage	7.4e-22	42.1
WP_049770166.1\|453099_453672_-	MazG-like family protein	A0A0A0YRU9	Streptococcus_phage	1.5e-19	34.9
WP_015729202.1\|453634_453955_-	hypothetical protein	NA	NA	NA	NA
WP_015729203.1\|453955_454318_-	hypothetical protein	NA	NA	NA	NA
WP_015729204.1\|454360_454711_-	hypothetical protein	Q4ZD40	Staphylococcus_phage	2.5e-41	70.7
WP_015729205.1\|454707_454893_-	hypothetical protein	A0A1J0MFY5	Staphylococcus_phage	1.4e-14	68.9
WP_100006923.1\|454898_455123_-	hypothetical protein	A0A223LIA9	Staphylococcus_phage	8.8e-24	68.9
WP_100006924.1\|455125_455425_-	hypothetical protein	A0A223LFZ4	Staphylococcus_phage	5.3e-16	47.2
WP_100006925.1\|455429_455675_-	hypothetical protein	NA	NA	NA	NA
WP_100006926.1\|455820_456027_-	hypothetical protein	NA	NA	NA	NA
WP_100006928.1\|456190_456973_-	ATP-binding protein	A0A1W6JPS4	Staphylococcus_phage	3.1e-87	60.2
WP_100006929.1\|456987_457752_-	DnaD domain protein	A0A1Q1PVU4	Staphylococcus_phage	6.1e-56	60.1
WP_037542879.1\|457803_458523_-	hypothetical protein	A0A0K2CZT8	Paenibacillus_phage	5.0e-44	43.2
WP_100006930.1\|458538_458946_-	hypothetical protein	A0A1L2JY32	Aeribacillus_phage	1.3e-17	43.5
458744:458760	attL	NA	NA	NA	NA
WP_100006931.1\|458960_459422_-	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	1.5e-49	61.5
WP_100006932.1\|459423_460059_-	MBL fold metallo-hydrolase	A0A1Q1PW06	Staphylococcus_phage	3.4e-76	66.5
WP_100006933.1\|460121_461036_-	recombinase RecT	A0A2I6PDH5	Staphylococcus_phage	1.8e-123	74.3
WP_180291841.1\|461049_461247_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_100006935.1\|461239_463192_-	AAA family ATPase	H9A0L2	Staphylococcus_phage	1.4e-181	57.1
WP_100006936.1\|463207_463465_-	DUF1108 family protein	A0A223LGN1	Staphylococcus_phage	2.3e-15	50.0
WP_100006937.1\|463534_463834_-	DUF2482 family protein	NA	NA	NA	NA
WP_180291842.1\|463835_464012_-	hypothetical protein	NA	NA	NA	NA
WP_100006938.1\|464026_464290_-	helix-turn-helix domain-containing protein	B7T0G2	Staphylococcus_virus	1.1e-28	70.9
WP_100006939.1\|464486_464714_-	BetR domain protein	NA	NA	NA	NA
WP_096665808.1\|464890_465205_+	helix-turn-helix transcriptional regulator	B5WZL2	Staphylococcus_phage	4.4e-29	67.0
WP_100006940.1\|465218_465680_+	toxin	A0A223LGM3	Staphylococcus_phage	1.7e-45	57.6
WP_100006941.1\|465726_466338_+	hypothetical protein	NA	NA	NA	NA
WP_037542866.1\|466398_467622_+\|integrase	site-specific integrase	A7YGM7	Staphylococcus_virus	8.7e-81	42.3
WP_037542865.1\|468379_469009_-	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	3.8e-32	38.1
468374:468390	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_PEPN01000009.1|WP_100006909.1|427781_428129_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_PEPN01000009.1|WP_100006909.1|427781_428129_+|hypothetical-protein

427781_428129_+

115 aa aa

AcrIIA19

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3638\|WP_100006909.1\|AcrIIA19\|II-A\|Verified\|Staphylococcus-pseudintermedius	1.0	1	1.0

427110-469009

6. NZ_PEPN01000063

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

51955 : 60375

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014614280.1\|51955_52438_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.1e-21	44.9
WP_080552893.1\|52385_53558_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_014614278.1\|53554_54256_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	1.0e-49	44.2
WP_014614277.1\|54258_54519_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_099986551.1\|54520_55192_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_014614275.1\|55184_57374_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.6e-139	40.3
WP_014614274.1\|57352_58774_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-50	33.4
WP_014614273.1\|58777_59809_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.2e-62	42.7
WP_063284640.1\|59808_60375_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.3e-28	39.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_PEPN01000007

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1100 : 25579

Staphylococcus_phage(95.45%)

integrase,portal,terminase

attL 15419:15433|attR 23397:23411

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100006877.1\|1100_2546_-\|portal	phage portal protein	A0A1J0MFN1	Staphylococcus_phage	1.7e-272	99.4
WP_037543597.1\|2557_3832_-\|terminase	PBSX family phage terminase large subunit	A0A1J0MFI2	Staphylococcus_phage	5.3e-238	100.0
WP_100006878.1\|3818_4262_-\|terminase	terminase small subunit	A0A1J0MFQ9	Staphylococcus_phage	1.2e-72	98.0
WP_065354588.1\|4562_4982_-	transcriptional regulator	I1W651	Staphylococcus_phage	1.1e-48	71.9
WP_100006879.1\|5136_5307_-	transcriptional regulator	A0A1J0MFF2	Staphylococcus_phage	6.3e-06	58.2
WP_100006881.1\|5604_5754_-	DUF1381 domain-containing protein	A0A223LIB6	Staphylococcus_phage	5.9e-16	93.9
WP_100006882.1\|5753_5954_-	hypothetical protein	NA	NA	NA	NA
WP_100006883.1\|6161_6701_-	dUTP pyrophosphatase	Q4ZD34	Staphylococcus_phage	7.2e-96	98.3
WP_179300485.1\|6693_6849_-	hypothetical protein	Q4ZD35	Staphylococcus_phage	5.9e-19	98.0
WP_015978027.1\|6849_7029_-	LapA family protein	Q4ZD38	Staphylococcus_phage	9.8e-26	100.0
WP_100006884.1\|7029_7245_-	hypothetical protein	A0A1J0MFC2	Staphylococcus_phage	1.8e-34	95.8
WP_100006885.1\|7244_7628_-	hypothetical protein	A0A223LGW7	Staphylococcus_phage	3.6e-65	97.6
WP_065354745.1\|7627_7879_-	hypothetical protein	A0A1J0MG61	Staphylococcus_phage	1.5e-40	100.0
WP_100006887.1\|8986_9511_-	HNH endonuclease	A0A075LYW6	Bacillus_phage	9.4e-16	52.9
WP_100006888.1\|9531_10002_-	DUF3310 domain-containing protein	A0A1J0MFT5	Staphylococcus_phage	8.8e-74	89.1
WP_180291839.1\|10001_10166_-	hypothetical protein	A0A1J0MFU6	Staphylococcus_phage	1.0e-24	100.0
WP_100006889.1\|10162_10483_-	hypothetical protein	A0A223LFZ4	Staphylococcus_phage	5.3e-46	87.7
WP_065354059.1\|10495_10714_-	hypothetical protein	A0A1J0MFH2	Staphylococcus_phage	1.3e-32	95.8
WP_180291840.1\|10735_11122_-	RusA family crossover junction endodeoxyribonuclease	A0A1J0MFP7	Staphylococcus_phage	1.3e-62	95.8
WP_099997373.1\|11137_11317_-	hypothetical protein	A0A1J0MFQ5	Staphylococcus_phage	7.5e-26	100.0
WP_100002825.1\|11310_12084_-	ATP-binding protein	A0A1J0MFK2	Staphylococcus_phage	5.8e-139	98.1
WP_100002827.1\|12093_12807_-	helix-turn-helix domain-containing protein	A0A1J0MGB2	Staphylococcus_phage	1.2e-95	81.9
WP_100002715.1\|12799_13471_-	hypothetical protein	A0A223LIA0	Staphylococcus_phage	2.9e-110	84.5
WP_096548964.1\|13484_14075_-	single-stranded DNA-binding protein	A0A223LGU5	Staphylococcus_phage	4.0e-63	93.9
WP_037543644.1\|14071_14701_-	ERF family protein	A0A1J0MFG1	Staphylococcus_phage	8.9e-114	100.0
WP_065354750.1\|14697_15183_-	siphovirus Gp157 family protein	A0A1J0MFN6	Staphylococcus_phage	2.6e-81	100.0
WP_075773709.1\|15166_15430_-	hypothetical protein	A0A1J0MFA5	Staphylococcus_phage	2.2e-42	100.0
15419:15433	attL	NA	NA	NA	NA
WP_065354751.1\|15441_15702_-	DUF1108 family protein	A0A1J0MFJ8	Staphylococcus_phage	5.4e-41	100.0
WP_065354752.1\|15771_15960_-	hypothetical protein	A0A1J0MFC8	Staphylococcus_phage	3.3e-24	100.0
WP_015728800.1\|15947_16172_-	hypothetical protein	A0A1J0MG48	Staphylococcus_phage	6.1e-33	100.0
WP_065354753.1\|16168_16888_-	ORF6C domain-containing protein	A0A1J0MFR6	Staphylococcus_phage	4.9e-132	100.0
WP_037543665.1\|16965_17193_+	hypothetical protein	A0A223LFH1	Staphylococcus_phage	1.9e-34	100.0
WP_015728797.1\|17189_17357_-	hypothetical protein	A0A1J0MFJ7	Staphylococcus_phage	1.5e-23	100.0
WP_015728796.1\|17462_17657_-	hypothetical protein	A0A1J0MFF3	Staphylococcus_phage	5.7e-19	100.0
WP_037543667.1\|17713_17977_+	CRISPR-associated endonuclease Cas2	A0A1J0MFM9	Staphylococcus_phage	1.8e-44	100.0
WP_037543668.1\|17980_18142_-	hypothetical protein	A0A1J0MF99	Staphylococcus_phage	2.7e-22	100.0
WP_037543670.1\|18152_18389_-	helix-turn-helix transcriptional regulator	A0A1J0MFJ4	Staphylococcus_phage	7.9e-39	100.0
WP_037543672.1\|18583_18913_+	helix-turn-helix transcriptional regulator	A0A1J0MFC1	Staphylococcus_phage	3.3e-51	100.0
WP_037543674.1\|18929_19385_+	ImmA/IrrE family metallo-endopeptidase	A0A223LGM3	Staphylococcus_phage	1.5e-81	100.0
WP_037543677.1\|19441_20095_+	hypothetical protein	A0A1J0MG42	Staphylococcus_phage	3.2e-114	100.0
WP_037543680.1\|20139_20577_+	DUF4231 domain-containing protein	A0A1J0MFR0	Staphylococcus_phage	4.3e-75	100.0
WP_037543682.1\|20570_20978_+	TIR domain-containing protein	A0A1J0MFJ5	Staphylococcus_phage	3.4e-74	100.0
WP_037543684.1\|20974_21172_-	hypothetical protein	A0A1J0MFE5	Staphylococcus_phage	4.3e-30	100.0
WP_015728790.1\|21286_22336_+\|integrase	site-specific integrase	A0A223LI82	Staphylococcus_phage	1.7e-202	100.0
WP_019166866.1\|22403_23801_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
23397:23411	attR	NA	NA	NA	NA
WP_014614444.1\|23898_24348_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
WP_014614445.1\|24337_25579_-	cysteine desulfurase	Q2XUY6	environmental_halophage	3.8e-124	50.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

8. NZ_PEPN01000027

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

15014 : 32537

Streptococcus_phage(100.0%)

integrase

attL 13975:14003|attR 39004:39032

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
13975:14003	attL	NA	NA	NA	NA
WP_000420682.1\|15014_15329_+	YdcP family protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0
WP_000985015.1\|15344_15731_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
WP_000813488.1\|15759_17145_+	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	1.1e-265	100.0
WP_000879507.1\|17147_17300_+	hypothetical protein	NA	NA	NA	NA
WP_000398284.1\|17322_18528_+	replication initiation factor domain-containing protein	A0A1S5SEX3	Streptococcus_phage	2.8e-233	100.0
WP_001009056.1\|18570_18792_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_000342539.1\|18908_19406_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
WP_000506270.1\|19380_19887_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
WP_000331160.1\|19870_22318_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	100.0
WP_000804748.1\|22320_24498_+	membrane protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
WP_000769868.1\|24494_25496_+	lysozyme family protein	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
WP_001224318.1\|25492_26425_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	3.1e-171	99.4
WP_001814923.1\|26669_26786_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_000691749.1\|26801_28721_+	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	99.4
WP_000336323.1\|28839_29007_+	cysteine-rich KTR domain-containing protein	D0R0F6	Streptococcus_phage	1.6e-14	68.0
WP_001227347.1\|29066_29420_-	helix-turn-helix domain-containing protein	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_000804885.1\|29924_30347_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.5e-72	100.0
WP_000857133.1\|30343_30574_+	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
WP_000814511.1\|31034_31238_+	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
WP_001291561.1\|31319_32537_+\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	3.7e-233	100.0
39004:39032	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

9. NZ_PEPN01000020

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

10. NZ_PEPN01000050

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

11. NZ_PEPN01000043

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11228 : 32625

Staphylococcus_phage(95.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014613578.1\|11228_12632_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.4e-135	52.3
WP_014613579.1\|12634_13621_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	7.3e-78	47.6
WP_014613580.1\|13596_13848_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	4.6e-29	70.6
WP_014613581.1\|13906_14377_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	7.1e-39	53.8
WP_041613219.1\|14357_15134_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	5.3e-84	61.6
WP_014613583.1\|15531_17112_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	2.2e-241	76.0
WP_020219664.1\|17575_18775_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	5.2e-179	80.1
WP_099986621.1\|18862_19774_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	9.4e-88	68.3
WP_015729346.1\|19915_20752_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	5.9e-113	69.7
WP_014613587.1\|20853_21201_-	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_014613588.1\|21197_21563_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.2e-25	51.7
WP_014613589.1\|21595_21898_-	hypothetical protein	NA	NA	NA	NA
WP_014613590.1\|22050_22761_+	transaldolase	M1PR54	Cyanophage	2.0e-21	39.0
WP_063278602.1\|22927_23377_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.3e-10	36.7
WP_099986623.1\|23379_23811_-	competence protein ComK	NA	NA	NA	NA
WP_172426177.1\|23813_24368_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	3.0e-20	34.4
WP_014613594.1\|24499_24724_+	hypothetical protein	NA	NA	NA	NA
WP_014613595.1\|24880_25744_+	glucosaminidase domain-containing protein	A0A1J0MFB0	Staphylococcus_phage	1.1e-37	39.6
WP_099986625.1\|26132_27701_+	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	2.0e-13	60.3
WP_014613597.1\|28156_29203_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.4e-106	54.7
WP_014613598.1\|29207_29837_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	7.2e-63	59.5
WP_014613599.1\|29850_31032_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	8.3e-153	66.2
WP_015729343.1\|31046_31514_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	9.4e-52	64.9
WP_099986627.1\|31638_32625_-	proline dehydrogenase family protein	A0A2H4PQT6	Staphylococcus_phage	6.3e-122	67.0

DBSCAN-SWA_2

36743 : 44535

Staphylococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014613607.1\|36743_37307_-	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	1.5e-56	56.8
WP_014613608.1\|37303_38257_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	6.4e-63	80.4
WP_100006996.1\|38404_39586_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	9.8e-138	62.5
WP_096533595.1\|39894_42309_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	81.8
WP_015729339.1\|42335_42647_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	2.2e-33	69.9
WP_063278942.1\|43278_44535_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	1.3e-31	69.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

12. NZ_PEPN01000070

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

71 : 17035

Staphylococcus_phage(100.0%)

tail,holin,head,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100007059.1\|71_683_+	DUF4355 domain-containing protein	A0A1J0MFG0	Staphylococcus_phage	3.9e-37	100.0
WP_015728831.1\|700_1612_+	hypothetical protein	A0A1J0MFM8	Staphylococcus_phage	5.0e-166	100.0
WP_060830214.1\|1701_2151_+	Ig domain-containing protein	A0A1J0MFM7	Staphylococcus_phage	1.9e-73	100.0
WP_015728833.1\|2162_2495_+\|head,tail	phage head-tail connector protein	A0A1J0MFR4	Staphylococcus_phage	1.1e-54	100.0
WP_063282645.1\|2491_2797_+	hypothetical protein	A0A1J0MF86	Staphylococcus_phage	5.8e-50	100.0
WP_015728834.1\|2796_3147_+	HK97 gp10 family phage protein	A0A1J0MFN9	Staphylococcus_phage	2.4e-60	100.0
WP_015728835.1\|3158_3554_+	hypothetical protein	A0A1J0MFV3	Staphylococcus_phage	8.5e-70	100.0
WP_015728836.1\|3571_4225_+\|tail	phage major tail protein, TP901-1 family	A0A1J0MG89	Staphylococcus_phage	1.1e-69	100.0
WP_015728837.1\|4284_4665_+\|tail	tail assembly chaperone	A0A1J0MFH0	Staphylococcus_phage	1.1e-63	100.0
WP_015728838.1\|4694_5045_+	hypothetical protein	A0A1J0MFN5	Staphylococcus_phage	3.0e-58	100.0
WP_075773688.1\|5061_8181_+\|tail	phage tail protein	A0A223LI73	Staphylococcus_phage	1.6e-251	100.0
WP_015728840.1\|8193_9126_+\|tail	phage tail family protein	A0A1J0MF79	Staphylococcus_phage	1.8e-179	100.0
WP_015728841.1\|9138_10536_+	hypothetical protein	A0A1J0MFL4	Staphylococcus_phage	1.4e-260	100.0
WP_015728842.1\|10539_11232_+	hypothetical protein	A0A1J0MFD6	Staphylococcus_phage	1.7e-102	100.0
WP_015728843.1\|11243_12287_+	hypothetical protein	A0A1J0MFI8	Staphylococcus_phage	3.0e-191	100.0
WP_065354739.1\|12303_13575_+\|plate	BppU family phage baseplate upper protein	A0A1J0MFQ3	Staphylococcus_phage	4.3e-240	100.0
WP_065354738.1\|13607_13982_+	hypothetical protein	A0A1J0MG33	Staphylococcus_phage	3.6e-54	100.0
WP_065354737.1\|14105_15995_+	glucosaminidase domain-containing protein	A0A1J0MFB0	Staphylococcus_phage	0.0e+00	100.0
WP_065354736.1\|16012_16267_+\|holin	phage holin	A0A1J0MFI9	Staphylococcus_phage	7.7e-40	100.0
WP_065354735.1\|16279_17035_+	CHAP domain-containing protein	A0A1J0MF88	Staphylococcus_phage	2.2e-151	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

13. NZ_PEPN01000023

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

147486 : 159919

Liberibacter_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_051144713.1\|147486_150720_+	ATP-dependent DNA helicase RecQ	A0A2H4UVQ8	Bodo_saltans_virus	1.2e-28	29.3
WP_099986611.1\|150815_152330_+	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	3.1e-51	28.9
WP_099986613.1\|152319_153603_+	restriction endonuclease subunit S	E3T4D5	Cafeteria_roenbergensis_virus	7.6e-19	29.8
WP_037542038.1\|153586_156709_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	1.6e-70	30.5
WP_100006956.1\|157013_158222_+\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	5.1e-65	38.5
WP_099986569.1\|158398_158629_+	hypothetical protein	NA	NA	NA	NA
WP_037542041.1\|159415_159919_+	hypothetical protein	Q4ZE83	Staphylococcus_phage	4.2e-13	39.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage