CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Prophage number	Anti-CRISPR protein number
NZ_PIYS01000012	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	DinG	0	0	0
NZ_PIYS01000033	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000015	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_PIYS01000016	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000017	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000030	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000027	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_PIYS01000004	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_PIYS01000018	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	csa3,cas3	0	1	0
NZ_PIYS01000023	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000011	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000028	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000002	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	cas3,csa3	0	0	0
NZ_PIYS01000013	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000031	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000001	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000005	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	cas3,DEDDh	0	2	0
NZ_PIYS01000020	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000034	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000006	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000009	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	1 crisprs	DEDDh	0	0	0
NZ_PIYS01000003	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	DEDDh	0	1	2
NZ_PIYS01000010	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000022	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000008	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	2 crisprs	NA	1	0	0
NZ_PIYS01000032	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	csa3,DEDDh	0	0	0
NZ_PIYS01000029	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	csa3	0	0	0
NZ_PIYS01000026	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000024	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000014	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_PIYS01000025	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000007	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_PIYS01000019	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	WYL	0	0	0
NZ_PIYS01000021	Pseudomonas pharmafabricae strain ZYSR67-Z, whole genome shotgun sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

104950 : 111019

Powai_lake_megavirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101193477.1\|104950_105382_-	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	1.3e-18	40.2
WP_093986971.1\|105523_105724_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_101193478.1\|105733_106072_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_093986973.1\|106074_107937_-	Fe-S protein assembly chaperone HscA	F2Y2E1	Organic_Lake_phycodnavirus	2.9e-104	38.9
WP_093986974.1\|107979_108501_-	co-chaperone HscB	NA	NA	NA	NA
WP_093986975.1\|108508_108832_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.4e-24	51.4
WP_093986976.1\|108847_109234_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.4e-53	79.8
WP_101193479.1\|109282_110497_-	IscS subfamily cysteine desulfurase	A0A141ZJV0	Faustovirus	1.7e-31	31.3
WP_101193480.1\|110527_111019_-	Fe-S cluster assembly transcriptional regulator IscR	M4M9K8	Vibrio_phage	4.8e-06	27.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_PIYS01000003

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

189933 : 242728

Pseudomonas_phage(50.0%)

protease,capsid,tRNA,lysis,tail,transposase,head,terminase,portal,integrase

attL 216035:216050|attR 248561:248576

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101192651.1\|189933_190407_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_101192652.1\|190426_191263_-	CAP domain-containing protein	NA	NA	NA	NA
WP_101192653.1\|191409_192559_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	4.2e-101	64.9
WP_101192654.1\|192607_192853_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LQB1	Mannheimia_phage	7.0e-14	42.5
WP_003108490.1\|192870_193158_+	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	1.1e-15	48.1
WP_101192655.1\|193586_195086_+	Fic family protein	NA	NA	NA	NA
WP_101192656.1\|195219_195972_-	hypothetical protein	NA	NA	NA	NA
WP_101192657.1\|196716_196953_-	hypothetical protein	NA	NA	NA	NA
WP_101192658.1\|196988_198188_+\|integrase	tyrosine-type recombinase/integrase	A0A059VF45	Pseudomonas_phage	7.3e-157	69.0
WP_093985236.1\|198406_198766_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003282572.1\|198746_199049_-	integration host factor subunit alpha	A3E2K9	Sodalis_phage	6.4e-09	37.1
WP_101192659.1\|199052_201431_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_101192660.1\|201473_202490_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	2.2e-29	37.6
WP_093985239.1\|202586_202943_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_021701550.1\|202971_203166_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_170307351.1\|203226_203778_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.3e-12	34.7
WP_101192661.1\|203777_205700_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	7.2e-130	38.5
WP_101192662.1\|205910_206930_-	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_101192664.1\|208146_209388_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_101192665.1\|209399_212582_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	3.9e-64	24.0
WP_101192666.1\|213013_213811_+	hypothetical protein	NA	NA	NA	NA
WP_157825245.1\|213731_214004_+	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA
WP_101192668.1\|214157_214385_+	hypothetical protein	NA	NA	NA	NA
WP_101192669.1\|214430_214865_+	hypothetical protein	NA	NA	NA	NA
WP_101192671.1\|215044_215260_-	carbon storage regulator	NA	NA	NA	NA
WP_101192672.1\|215337_215862_-\|lysis	lysis protein	A0A0H5AUG6	Pseudomonas_phage	1.1e-19	43.1
WP_101192673.1\|215858_216371_-	hypothetical protein	A0A0H5BBZ5	Pseudomonas_phage	2.5e-37	56.5
216035:216050	attL	NA	NA	NA	NA
WP_101192674.1\|216431_216668_-	hypothetical protein	NA	NA	NA	NA
WP_101192675.1\|216655_218419_-	hypothetical protein	B7SYF1	Stenotrophomonas_phage	7.7e-46	34.5
WP_170307345.1\|218418_218895_-	hypothetical protein	NA	NA	NA	NA
WP_101192677.1\|219176_220178_-	hypothetical protein	A0A1L2C9I0	Pseudomonas_phage	3.1e-60	41.5
WP_101192678.1\|220177_223753_-	hypothetical protein	A0A0M4U447	Ralstonia_phage	1.3e-180	36.2
WP_101192679.1\|223809_224241_-	hypothetical protein	A0A076G8B9	Pseudoalteromonas_phage	1.5e-11	35.0
WP_101192680.1\|224240_227606_-	tape measure protein	A0A2I7S9D9	Vibrio_phage	3.7e-49	44.1
WP_101192681.1\|227666_228359_-	hypothetical protein	NA	NA	NA	NA
WP_101192682.1\|228480_229239_-	hypothetical protein	NA	NA	NA	NA
WP_101192683.1\|229308_229494_-	glycogen branching protein	NA	NA	NA	NA
WP_101192684.1\|229503_229971_-	hypothetical protein	NA	NA	NA	NA
WP_101192685.1\|229970_230573_-	hypothetical protein	A0A0U4J906	Pseudomonas_phage	3.4e-09	31.2
WP_101192686.1\|230569_231124_-	hypothetical protein	NA	NA	NA	NA
WP_101192687.1\|231123_231441_-\|head,tail	phage gp6-like head-tail connector protein	A0A2D1GNK0	Pseudomonas_phage	3.6e-39	72.4
WP_101192688.1\|231437_231626_-	hypothetical protein	A0A2D1GNQ9	Pseudomonas_phage	2.6e-08	68.2
WP_101192689.1\|231680_232880_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	2.3e-166	72.9
WP_101192690.1\|232890_233547_-\|head,protease	HK97 family phage prohead protease	A0A2D1GNL2	Pseudomonas_phage	4.7e-97	78.5
WP_101192691.1\|233521_234745_-\|portal	phage portal protein	A0A2D1GNU4	Pseudomonas_phage	1.2e-194	83.2
WP_101192692.1\|234744_236460_-\|terminase	terminase large subunit	A0A0R6PKH7	Moraxella_phage	3.3e-243	72.8
WP_170307346.1\|236459_236813_-	hypothetical protein	Q9XJT7	Pseudomonas_phage	6.3e-16	45.8
WP_157825247.1\|236900_237203_-	HNH endonuclease	A0A0U4B0J6	Pseudomonas_phage	1.4e-27	53.5
WP_101192695.1\|237306_237639_-	hypothetical protein	A0A2H4J893	uncultured_Caudovirales_phage	3.4e-11	40.4
WP_101192696.1\|237829_238195_-	hypothetical protein	A0A1W6JTD2	Pseudomonas_phage	1.2e-14	39.1
WP_101192698.1\|238493_238862_-	endodeoxyribonuclease RusA	A0A088F6Y8	Sulfitobacter_phage	2.2e-11	39.7
WP_157825248.1\|238865_239900_-\|integrase	tyrosine-type recombinase/integrase	A0A2D1GND4	Pseudomonas_phage	3.0e-58	40.3
WP_101192700.1\|239899_240148_-	hypothetical protein	NA	NA	NA	NA
WP_157825249.1\|240627_241188_-	replication P family protein	A0A1B0YZY6	Pseudomonas_phage	4.3e-35	44.8
WP_101192702.1\|241289_242060_-	hypothetical protein	A0A2H4J580	uncultured_Caudovirales_phage	1.2e-43	62.3
WP_101192789.1\|242059_242728_-	phage antirepressor KilAC domain-containing protein	A0A0U4J8Z7	Pseudomonas_phage	1.7e-46	48.4
248561:248576	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_PIYS01000003.1|WP_101192668.1|214157_214385_+|hypothetical-protein

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Acr_ID: NZ_PIYS01000003.1|WP_101192669.1|214430_214865_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_PIYS01000003.1|WP_101192668.1|214157_214385_+|hypothetical-protein

214157_214385_+

75 aa aa

AcrIE9

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3678\|WP_101192668.1\|AcrIE9\|I-E\|Verified\|Pseudomonas-pharmafabricae	1.0	1	1.0

189933-242728

NZ_PIYS01000003.1|WP_101192669.1|214430_214865_+|hypothetical-protein

214430_214865_+

144 aa aa

AcrIC6

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3674\|WP_080050315.1\|AcrIC6\|I-C\|Verified\|Pseudomonas-sp.-S-6-2	0.75	1	1.0

189933-242728

4. NZ_PIYS01000005

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

117172 : 125442

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101192873.1\|117172_118525_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	E4ZFI6	Streptococcus_phage	2.1e-27	27.3
WP_093985005.1\|118554_119445_-	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	1.5e-50	39.1
WP_101192874.1\|119528_120971_-	sensor histidine kinase	W8CYF6	Bacillus_phage	1.6e-09	24.0
WP_101192875.1\|120876_121581_-	response regulator transcription factor	W8CYM9	Bacillus_phage	6.4e-20	29.1
WP_101192876.1\|121691_124442_+	response regulator	A0A1V0SGX0	Hokovirus	7.3e-43	26.7
WP_101192877.1\|124452_125442_+	2-hydroxyacid dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	1.5e-62	42.4

DBSCAN-SWA_2

278282 : 286028

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101192972.1\|278282_279095_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.7e-19	32.3
WP_101192973.1\|279338_280313_+	KpsF/GutQ family sugar-phosphate isomerase	A0A0B6VSY5	Edwardsiella_phage	1.3e-18	33.2
WP_093985145.1\|280315_280840_+	HAD hydrolase family protein	A0A222YVZ6	Synechococcus_phage	1.3e-09	31.5
WP_101192974.1\|280836_281415_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_093985147.1\|281401_281932_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_093985148.1\|281931_282657_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.4e-23	27.0
WP_093985149.1\|282794_284285_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_093985150.1\|284384_284693_+	ribosome-associated translation inhibitor RaiA	A0A0M7QCF2	Escherichia_phage	3.0e-06	33.0
WP_093985151.1\|284697_285162_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_101192975.1\|285170_286028_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	2.1e-09	30.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_PIYS01000008

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CRISPR-Cas detection and classification

Crispr_ID: NZ_PIYS01000008_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_PIYS01000008_1

56531-56682

Orphan

Consensus_repeat	Method
ATGGCGTTACCAGTACCAATAGCCAGATTCAAGGGAGCCTGACTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_PIYS01000008_1

>merge|NZ_PIYS01000008|1|56531-56682|CRISPRCasFinder
ATGGCGTTACCAGTACCAATAGCCAGATTCAAGGGAGCCTGACTGCAGGCAGTGGAGCTATAAGCCTTACGGACAGCACTGTGCTCGGTAATGTGAATGGTCAAAATGGCGTTACCAGTACCAATAGCCAGGTTCAAGGGAGCCTGACTGCA

>NZ_PIYS01000008|1|1|56531-56682|CRISPRCasFinder
ATGGCGTTACCAGTACCAATAGCCAGATTCAAGGGAGCCTGACTGCA	GGCAGTGGAGCTATAAGCCTTACGGACAGCACTGTGCTCGGTAATGTGAATGGTCAAA
ATGGCGTTACCAGTACCAATAGCCAGGTTCAAGGGAGCCTGACTGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_PIYS01000008.1\|WP_101193114.1\|51128_52361_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NZ_PIYS01000008.1\|WP_101193125.1\|64152_65565_-\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NZ_PIYS01000008.1\|WP_101193117.1\|53457_53907_+\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NZ_PIYS01000008.1\|WP_093986214.1\|54792_55653_+\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NZ_PIYS01000008.1\|WP_101193116.1\|52902_53433_+\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NZ_PIYS01000008.1\|WP_101193126.1\|65893_67399_+\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234932
NZ_PIYS01000008.1\|WP_093986218.1\|61403_62486_-\|nitrogen-regulation-protein-NR(II)	unknown	unknown	gnl\|CDD\|226370
NZ_PIYS01000008.1\|WP_101193113.1\|49404_51129_+\|GspE/PulE-family-protein	unknown	unknown	gnl\|CDD\|274186
NZ_PIYS01000008.1\|WP_101193127.1\|67545_69363_+\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_PIYS01000008.1\|WP_101193115.1\|52360_52876_+\|hypothetical-protein	unknown	unknown	unknown
NZ_PIYS01000008.1\|WP_101193118.1\|53912_54350_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227305
NZ_PIYS01000008.1\|WP_101193119.1\|54346_54793_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|225076
NZ_PIYS01000008.1\|WP_101193122.1\|59973_61407_-\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818
NZ_PIYS01000008.1\|WP_101193112.1\|47967_49404_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_PIYS01000008.1\|WP_101193124.1\|63365_63983_-\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_PIYS01000008.1\|WP_101193143.1\|70382_70814_+\|DUF2628-domain-containing-protein	unknown	unknown	gnl\|CDD\|313994
NZ_PIYS01000008.1\|WP_093984594.1\|69986_70274_+\|hypothetical-protein	unknown	unknown	unknown
NZ_PIYS01000008.1\|WP_101193120.1\|55642_56059_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227070
NZ_PIYS01000008.1\|WP_101193123.1\|62733_63369_-\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_PIYS01000008.1\|WP_157825257.1\|69504_69900_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224376

Protein	Function_ID	Function_description	E-value
NZ_PIYS01000008.1\|WP_101193114.1\|51128_52361_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	1.44284e-119
NZ_PIYS01000008.1\|WP_101193117.1\|53457_53907_+\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	1.66603e-09
NZ_PIYS01000008.1\|WP_093986214.1\|54792_55653_+\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	2.466e-06
NZ_PIYS01000008.1\|WP_101193116.1\|52902_53433_+\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	4.31305e-11
NZ_PIYS01000008.1\|WP_101193126.1\|65893_67399_+\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234932	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional.	0
NZ_PIYS01000008.1\|WP_093986218.1\|61403_62486_-\|nitrogen-regulation-protein-NR(II)	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	3.91129e-161
NZ_PIYS01000008.1\|WP_101193113.1\|49404_51129_+\|GspE/PulE-family-protein	gnl\|CDD\|274186	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	0
NZ_PIYS01000008.1\|WP_101193127.1\|67545_69363_+\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_PIYS01000008.1\|WP_101193125.1\|64152_65565_-\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NZ_PIYS01000008.1\|WP_101193118.1\|53912_54350_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227305	COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion].	7.76197e-10
NZ_PIYS01000008.1\|WP_101193119.1\|54346_54793_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	3.91375e-09
NZ_PIYS01000008.1\|WP_101193122.1\|59973_61407_-\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
NZ_PIYS01000008.1\|WP_101193112.1\|47967_49404_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	6.046e-15
NZ_PIYS01000008.1\|WP_101193124.1\|63365_63983_-\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	5.2611e-08
NZ_PIYS01000008.1\|WP_101193143.1\|70382_70814_+\|DUF2628-domain-containing-protein	gnl\|CDD\|313994	pfam10947, DUF2628, Protein of unknown function (DUF2628). Some members in this family of proteins are annotated as yigF however currently no function is known.	8.65504e-05
NZ_PIYS01000008.1\|WP_101193120.1\|55642_56059_+\|hypothetical-protein	gnl\|CDD\|227070	COG4726, PilX, Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion].	6.9123e-08
NZ_PIYS01000008.1\|WP_101193123.1\|62733_63369_-\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	1.08836e-08
NZ_PIYS01000008.1\|WP_157825257.1\|69504_69900_+\|hypothetical-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	0.00056425

>NZ_PIYS01000008.1|WP_101193120.1|55642_56059_+|hypothetical-protein
MRPESSQRGFALVAAMFLIIVVALLVAAMSRLASDQHGGNSLAIQQARAYQAARAGLEWGIARSLGSAACAAGSPALAASNLAEFTVTVSCQARGPYVDGARNLQILLLTAEAGNGLPGGRPDYAFRRLQAQIEVSLP
>NZ_PIYS01000008.1|WP_093986214.1|54792_55653_+|type-II-secretion-system-protein
MRRQAAFTLVELVMVIALAGVVAVMISTVLVRPMQGLVDQSRRAELVDQAGLALSRMARDIRLAVPNSVRVQGSDLELLRIQAAGRYLPNRLGGDGLRFAPGTAAECTATGNDCQAFQVLDPALAVAGARWLVLYNVGAQSGGVAVPGSNLWAAADADGRHVISPSGSTLSFASQAGQGVLRLQPPGGSFAFSFASPQRRFYLADEVVGLRCDLANRRLLRYTRSSLAPAFSAEQSEVLASDVSRCAFSYQPGSQQRAGLVSLTLGLSRDNEAVELLQQVQVDNAP
>NZ_PIYS01000008.1|WP_101193119.1|54346_54793_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MKRQRGMTLVELVIAIVIIGIAAAALYSAMASLAGRSADPMLRQQSLLLAEAYLEEILAQAYADPGAAACSQRACFDDVLDYHNLDEQPPQDARGGVLNQLAGYRVRVSVSDSSLAAGAASVAARYVEVRVTDPKGDELRLGGYRSNY
>NZ_PIYS01000008.1|WP_101193118.1|53912_54350_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MRGFTLVELLMVMVIIGILAAVVGPRFFERQVFDERLFHEQLASAVRYAQKHALASGCRVQAQLDNSGLRLRRAANCESGSYSASLLAADGPYADIPLPAGVSLSGNSFPVTFNALGQADRSVAVNLGGHSLRVHAPAGWVETGP
>NZ_PIYS01000008.1|WP_101193117.1|53457_53907_+|type-II-secretion-system-protein
MKKQQGGFTLIELIMVIVILGILAAFALPRFADFSNQARVASMNGIAGSLRSASAISRAAFLAAGNSAAPTVTLEGLQIDMVNGYPAATENGITRAAQVSGVTATPGTGAITYTVTGYTGTNCQVVYTAATVSGSTVTPPTIAATTGGC
>NZ_PIYS01000008.1|WP_101193116.1|52902_53433_+|type-II-secretion-system-protein
MQRPQRGFTLIELVVVIAILGILAAVALPRFINATKDAHEAALKGTAGALASAVLLVRSQWELNRNGGSNGCAGGNCQIDVQGFGDNTVDVNANGWPIGTGRAGNPAATTAMSATTCTQVFTSILQGSAPTVGAATSNDYVPSAAGTLCTFTYQRDGANDSIQYNANTGAVTYTFQ
>NZ_PIYS01000008.1|WP_101193115.1|52360_52876_+|hypothetical-protein
MREALTAWTLRRRWQRLGLWLVLLMAIGLLWLLTWRILGVLEMRNMQAMHGALARGLSDLAAERLAAGQPLPEAWLRGNPFQLLRWQPDDYCGSLPPPGQRRAGCWYYLAERGWLAYQARYADRRAPAGDGLYLWQLRRLPEKMQTASQRDDGLAFELQSVRNDGFPSSAR
>NZ_PIYS01000008.1|WP_101193114.1|51128_52361_+|type-II-secretion-system-F-family-protein
MAQFRYSGRNAQGARVSGLVEAASLDQAANELLAQQITPLQIDAQQADKGADVLQQLLERLRRRRVELDELIIFCRQMYSLSKAGVPIIRAIGGLAESTRNLYLREVLQAVRSDLERGLGLAVAMNVHPRVFNTLFISMVSVGENTGQLDGAFRQLSSYLELERETRKRLKQATRYPLFVLSAMGVALAVINLFVIPAFAKVFEQFKAELPWATRVLIGTSQFFQDYWWLLLILLAGGLYGFLRWTKTEQGALHWDRLKLRLPIVGGIFERIALARFTRTFAMMYRAGVPLLQTLSINSASVGNRHIGQAVLAMREGIERGEALTRTAAASGLFTPLVLQMMAVGEETGALDDLFVEVADFYEQEVDYDLKQLADAIEPILIVAMGVLVLILALGVFLPMWELGSAAQGR
>NZ_PIYS01000008.1|WP_101193113.1|49404_51129_+|GspE/PulE-family-protein
MAENDVRQRKVRLGDLLVQAGLINDEQLQQALQSQKISGAKLGRAVVDLGFVSEVQLLTALSEQLRIPFIELKHFKLDAQLVQSLPEAMARRFRAIVLSREGGGLLVGMSDPLDLFALDELERVLKTRVQPAVIRESELLSSLDGLYRRTSEIASLAGELEGSLQESDFDLSKLGAESTSDAPVVRLLQTLFEDAVQMKASDIHIEPDEGVVRIRQRIDGVLNEQVMNEHRVASALVMRLKIMSGLDISEKRLPQDGRFNIRVRNRSIDVRVSTMPVQHGESVVMRLLDQSGGLFNLDHTGMPADMLARFRRLLQRPFGMVLVTGPTGSGKTTTLYAGLAELNSPEKKIITVEDPVEYRLPRVNQVQVNPKIELTFGRVLRAALRQDPDIVLVGEMRDQETAEIGLRAALTGHLVLSTLHTNDAQTSAMRLVDMGAEPFLVATALNAVLAQRLVRRVCENCMQEQQADPQQLAWLERLHGGSLAGKVFRHGAGCHQCHNTGYNGRVGVYELLEMDEPMIAALRRNDPQAFAEAARANPHYRPLAACALDYALAGVTSIDEVLKVCATLTDVDSL
>NZ_PIYS01000008.1|WP_101193112.1|47967_49404_+|tetratricopeptide-repeat-protein
MSLVNDMLRDLEKRRAAPGDSPLADDLYAVDEAAAARRDRSLRLRRGLLWFAAVMLGAFLIGNLLGRVVKGVPAIPPPREAQVQEPAAVTPVQLLEVLPQHQPRRFVLQLLLDRTLSYQRLDESGAVSLVLPGTLLPGEPRHGRLQQQGRSLSWRVEQQGDAVHVLLVGLGGELQVEDRLEALGTRWQLWLQVDLQRNDEERVQETPLDLPVAEVVAEPASESPPDVPPGFGQVREEPAPIAWPQPPATQRAPARPAPAKAARGSSAVCLHGDSCWPVSSPQAAPQVHIQGLPDPLQRAREALAAQRYAEAISELQALHQRQPGDRHVTRWLARAYLAAGQLEPLLAWLPGQLQAQPGDTELRLLLARAQLQQGQPAVALATLQEQAPSLDSDPAYHAVLAAAQQQAGQWAQSAATYQALLARRGSQGAWHLGLALAMERLQQAEQARLHYQRALQDSALEPATRDYIAARLRALGGQ
>NZ_PIYS01000008.1|WP_101193122.1|59973_61407_-|nitrogen-regulation-protein-NR(I)
MSRSETVWIVDDDRSIRWVLEKALQQEGLNTQCFESADGVLNRLTRQQPDVIISDIRMPGTSGLDLLAEIRQMHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRANLHAQEQLRQAEPEPQLRSPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPRAAAPFIALNMAAIPKDLMESELFGHEKGAFTGAANQRRGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLENLVREGKFREDLFHRLNVIRIHIPRLADRREDIPALARHFLARAAQELAVEPKLLKSETEDYLRQLAWPGNVRQLENTCRWITVMASGREVHVDDLPPELLNQPAETGQTGDWQQALRLWADQALARGQSNLLDCAVPCFERIMIETALKHTAGRRRDAALLLGWGRNTLTRKIKELGMNVDGGDEDDSDD
>NZ_PIYS01000008.1|WP_093986218.1|61403_62486_-|nitrogen-regulation-protein-NR(II)
MIDHALHRLLLDNLTTATLLLNDELRLEYMNPAAEMLLAISGQRSHGQFISELFTESPEALNALHQAVVQAHPFTKREAHLTSLNGQSLVVDYAVTPILSRGTTLLLLEVHPRDRLLRISKEEAQLSKQETTKMLVRGLAHEIKNPLGGIRGAAQLLARELPATELRDYTDVIIEEADRLRNLVDRMLGSNKLPALSPTNIHEVLERVCSLVDLESQGSITLVRDYDPSIPELLVDREQMIQAVLNIVRNAMQALASQPEQRLGRITLRTRSLRQFTIGHTRHRLVCKVEIIDNGPGIPAELQETLFYPMVSGRADGTGLGLAITQTIISQHQGLIECESHPGHTLFSIFLPLEQGAAPS
>NZ_PIYS01000008.1|WP_101193123.1|62733_63369_-|DUF4124-domain-containing-protein
MRQRILASLLLLCCTPLSAQVYTYIDAEGNRVFTDKPRTSQAQRIELKPSPAVPISPPQPARLGIPAPPPQQLAEVAAPAYALLRILLPQVDASISHAGGEILVTVQSDPTLQEGHQYRVLLDGQPYGEPSRSAAIVLNNVDRGSHMLAVEIIDAAGKTLERTPAQPLHMQRISLAQKRRVNPCQKADYGVRPECPLKDKPVEPRKLLPFL
>NZ_PIYS01000008.1|WP_101193124.1|63365_63983_-|DUF4124-domain-containing-protein
MRLSLICLLCSLALPATAQIYKYTDAQGNTVFSDQAPQGVASEQVTLPAVNTVQPPPMPTLEATGGEPAATGQAYSTLRLLGLPADDGALRANNGTFSVNVELRPALRANHRLRLVLDGQPHGPATRGSQLQVVNADRGEHQLAVQVLAGEQVIQQSESHTFTVQRVNTGSPALRPPPPQPKPTPSPAPSAPAPAPQSNSIAAPR
>NZ_PIYS01000008.1|WP_101193125.1|64152_65565_-|type-I-glutamate--ammonia-ligase
MSKAIQLIKEHDVKWVDLRFTDIKGQQHHITMPARDALDEDFFEHGKMFDGSSIHGWKGIEASDMILLPDDSTAVLDPFTEEPTLILVCDVIEPSTMQGYDRDPRAIAKRAEEFLKSTGIGDTVFVGPEPEFFIFDSVKFKSDMSGSMFKIFSEQAAWNSDADFNGGQGNNGHRIGVKGGYLPTPPSDPDHEIRTAMCNALEEMGQVVEVHHHEVATAGQNEIGVKFNTLVAKADEVQTLKYCVHNVAEAYGKTATFMPKPLYGDNGSGMHVHMSIAKDGKNTFAGDGYAGLSETALYFVGGIIKHGKALNALTNPSTNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVASPKGRRIEARFPDPAANPYLAFAALLMAGIDGIQNKIHPGDAADKNLYDLPPEESKLIPQVCGSLKEALEALEADHDFLLKGGVFSREFLDSFIELKAAEEIKVRTFVHPLEYDLYYSV
>NZ_PIYS01000008.1|WP_101193126.1|65893_67399_+|tRNA-4-thiouridine(8)-synthase-ThiI
MKFIVKVFPEITIKSRPVRKQFIRQLGKNIRSVLRELDPQLQVQGEWDNLEVQTSLQEPRARAALIARLRCVPGIAHFLEVHDYPLGDFDDILDKCRQHFGSQLPGKVFSVRCKRGGKHSFSSVEVASYVGSHLRREFGAAGIDLKNPEVQVRIEIRHDRLYVVHAQHEGIGGYPLGSLEQSLVLMSGGFDSTVAAYQMMRRGLLTHFCFFNLGGRAHELGVMEVAHFLWQKYGSSHRVLFISVPFEEVVGELLNKVDNSHMGVILKRMMLRVATRLAEELYIDALVTGEAISQVSSQTLTNLKVIDAATDMLVLRPLIASHKQDIIDCATQIGTADYAKHMPEYCGVISVNPTTRAKAYRVEHEEQQFDMAILERALQRARKITVDKLIDELGADVQVEEVQQALSGQIILDIRPADAVEEQPLQVEGIEVQTLPFYALNSRFKELDASRQYLLYCDKGVMSRLHAHHLLSEGHANVRVYRPAGQPQTASYQPQEGHVPS
>NZ_PIYS01000008.1|WP_101193127.1|67545_69363_+|translational-GTPase-TypA
MIENLRNIAIIAHVDHGKTTLVDKLLRLSGTLDRKEAENERVMDSNDQEKERGITILAKNTALKWGDYNINIVDTPGHADFGGEVERVMSMVDSVLLVVDAQDGPMPQTRFVTQKAFKAGLRPIVVVNKIDRPGARPDWVIDQIFDLFDNLGATDEQLDFPIVYASALNGIAGLDHENMDDNMDALFQAIVDHVPAPKVDSEGPFQMQISQLDYNSFLGVIGIGRITRGRIKANSPVVAISDDGSKRNGRILKIMGHSGLQRVEVPEAEAGDIVCVSGMDELFISDTLCDPQNVEARPPLTVDQPTVSMTFQVNDSPFAGREGKFVTSRNIKERLEKELLHNVALRVEPGDSAEKFKVSGRGELHLSVLIETMRREGFELAVGRPEVVIIEKDGEKQEPYENVTIDIEEQHQGPVMEQMGLRKGDMTNMIPDGKGRIRLEYLIPARGLIGFRNAFLTMTSGTGILTSTFDHYGPVKAGEVAHRQNGVLVSMATGTALTYSLETLQDRGKLFLSPGDEVYEGQLAGIHSRDNDLVINPTKAKKLDNMRASGKDETIQLTPALKFTLEQALEFIDEDELVEVTPKSIRLRKKLLNENDRKRYERSKV
>NZ_PIYS01000008.1|WP_157825257.1|69504_69900_+|hypothetical-protein
MPRLIPRQSHPYQAPLTAPEQLAPLRARSVAIPLAVGLLCALLAALLPTLVVPSFWPIFEAFGEHLPLITALALNYYLLLWLWPLGFVVVFLCWPAARRRGWVPCLTGVLGLLASLVLLAVSMYGPIFSLG
>NZ_PIYS01000008.1|WP_093984594.1|69986_70274_+|hypothetical-protein
MWDDGRLLLALGLFASGLYLLVNLLFCPFSALQLGLAVACLLAAYWVKPRRRSLGEVADWLDVLDLLIELPVRAVLGLLRGVARLLRGDVGGLDL
>NZ_PIYS01000008.1|WP_101193143.1|70382_70814_+|DUF2628-domain-containing-protein
MSQANVYAPPQAELSNRQNETQVIDALTVSDGWKRTFHLLVKAGGPRLPNLQALSGGERFKVSFNILGFLFGPFYYLAKGMWKKALSLFAACLAVLIPLSLTLEYFGLDALANALGYGAAAVFAVRANIDYYKKACLDDNSWW

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Crispr_ID: NZ_PIYS01000008_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_PIYS01000008_2

93729-93801

Orphan

Consensus_repeat	Method
CCGCTGCCAAGCCGGTAGCCGCCAAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_PIYS01000008_2

>merge|NZ_PIYS01000008|2|93729-93801|CRISPRCasFinder
CCGCTGCCAAGCCGGTAGCCGCCAAGCCTGCGGTGAAGAAGCCGGCCGCTGCCAAACCGGCCGCTGCCAAGCC

>NZ_PIYS01000008|2|2|93729-93801|CRISPRCasFinder
CCGCTGCCAAGCCGGTAGCCGCCAAGCC	TGCGGTGAAGAAGCCGG
CCGCTGCCAAACCGGCCGCTGCCAAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_PIYS01000008.1\|WP_093984617.1\|92424_92700_+\|polyhydroxyalkanoic-acid-system-family-protein	unknown	unknown	gnl\|CDD\|378230
NZ_PIYS01000008.1\|WP_093984612.1\|88497_88830_-\|phosphoribosyl-ATP-diphosphatase	unknown	unknown	gnl\|CDD\|179005
NZ_PIYS01000008.1\|WP_093984618.1\|92810_93239_+\|phasin-family-protein	unknown	unknown	gnl\|CDD\|377530
NZ_PIYS01000008.1\|WP_101193136.1\|87129_87909_-\|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|182840
NZ_PIYS01000008.1\|WP_101193140.1\|90856_91474_-\|SCP2-sterol-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225706
NZ_PIYS01000008.1\|WP_093984611.1\|88238_88469_-\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|234764
NZ_PIYS01000008.1\|WP_101193138.1\|88822_89224_-\|phosphoribosyl-AMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234598
NZ_PIYS01000008.1\|WP_170307333.1\|94029_95361_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|379017
NZ_PIYS01000008.1\|WP_093984616.1\|91473_92244_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_PIYS01000008.1\|WP_101193137.1\|87905_88226_-\|Sec-independent-protein-translocase-subunit-TatB	unknown	unknown	gnl\|CDD\|166942
NZ_PIYS01000008.1\|WP_101193139.1\|89282_90860_-\|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB	unknown	unknown	gnl\|CDD\|235310

Protein	Function_ID	Function_description	E-value
NZ_PIYS01000008.1\|WP_093984617.1\|92424_92700_+\|polyhydroxyalkanoic-acid-system-family-protein	gnl\|CDD\|378230	pfam09650, PHA_gran_rgn, Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn). Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins found at the surface of PHA granules. These proteins have so far been found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.	1.1206e-30
NZ_PIYS01000008.1\|WP_093984612.1\|88497_88830_-\|phosphoribosyl-ATP-diphosphatase	gnl\|CDD\|179005	PRK00400, hisE, phosphoribosyl-ATP diphosphatase.	6.44427e-52
NZ_PIYS01000008.1\|WP_093984618.1\|92810_93239_+\|phasin-family-protein	gnl\|CDD\|377530	pfam05597, Phasin, Poly(hydroxyalcanoate) granule associated protein (phasin). Polyhydroxyalkanoates (PHAs) are storage polyesters synthesized by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.	4.14729e-41
NZ_PIYS01000008.1\|WP_101193136.1\|87129_87909_-\|twin-arginine-translocase-subunit-TatC	gnl\|CDD\|182840	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC.	3.9209e-111
NZ_PIYS01000008.1\|WP_101193140.1\|90856_91474_-\|SCP2-sterol-binding-domain-containing-protein	gnl\|CDD\|225706	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown].	1.12661e-47
NZ_PIYS01000008.1\|WP_093984611.1\|88238_88469_-\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|234764	PRK00442, tatA, twin-arginine translocase TatA/TatE family subunit.	4.34896e-23
NZ_PIYS01000008.1\|WP_101193138.1\|88822_89224_-\|phosphoribosyl-AMP-cyclohydrolase	gnl\|CDD\|234598	PRK00051, hisI, phosphoribosyl-AMP cyclohydrolase; Reviewed.	4.84811e-76
NZ_PIYS01000008.1\|WP_170307333.1\|94029_95361_+\|IS4-family-transposase	gnl\|CDD\|379017	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal. This family represents the N-terminal region of proteins carrying the transposase enzyme, DDE_Tnp_1 (that was Transposase_11), pfam01609, at the C-terminus. The full-length members are Insertion Element 4, IS4. Within the collection of E.coli strains, ECOR, the number of IS4 elements varies from zero to 14, with an average of 5 copies/strain.	1.05645e-36
NZ_PIYS01000008.1\|WP_093984616.1\|91473_92244_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	1.95047e-148
NZ_PIYS01000008.1\|WP_101193137.1\|87905_88226_-\|Sec-independent-protein-translocase-subunit-TatB	gnl\|CDD\|166942	PRK00404, tatB, Sec-independent protein translocase subunit TatB.	2.66257e-39
NZ_PIYS01000008.1\|WP_101193139.1\|89282_90860_-\|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB	gnl\|CDD\|235310	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed.	0

>NZ_PIYS01000008.1|WP_093984618.1|92810_93239_+|phasin-family-protein
MSKVAVKKDTAEQDKAGALADVKAYARKIWLAGLGAYAKAGQEGVEYFKDLVKAGEGVEKKGKKLVDQQVDAANSQIDAVKNSVAEAKGKVEGRFEQIEQAFDKRVASGLNRLGIPSRQDIDALSARLDALNALLEQAAKNK
>NZ_PIYS01000008.1|WP_093984617.1|92424_92700_+|polyhydroxyalkanoic-acid-system-family-protein
MSRISVARHHTLGLEQARGKAQALAERLASQYQVKYRWVGDTLEFKRSGADGQIAVSADQVSVQLKLGLLLSALGGTIQREIEEVLDRELC
>NZ_PIYS01000008.1|WP_093984616.1|91473_92244_-|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MSDARKATEQEPTTHFGFQSVPESQKAQKVAEVFHSVASKYDLMNDVLSGGMHRLWKRFTIELSGVRPGNRVLDIAGGTGDLTRKFASLVGPSGEVVLADINDSMLKVGRDRLLDKGVAGNVCFVQADAEKLPFPDNHFDVVTIAFGLRNVTHKDDALRSMLRVLKPGGRLLVLEFSKPSSELLSKFYDTYSFRFMPLAGKLITNDADSYRYLAESIRMHPDQETLKAMMAEAGFERVSYHNMTGGIVALHRGIKP
>NZ_PIYS01000008.1|WP_101193140.1|90856_91474_-|SCP2-sterol-binding-domain-containing-protein
MLLSGLYAGVELGLNRLLAMDSTALPRLARLNGRVIAVQCSAPAIQLYLLPGADGLQLATHWEAEADCRLQGTAAALLRLALADDKTSLLHSDQLTLQGDSGVLLELAAILQDLELDWQYELARWLGPVAGPLLAGHVQSRASWMKQGAGRLQQMFADYLAEETRTLVGRREAEARFTELDQLNLALDRLEARLQRLAQRAKPDA
>NZ_PIYS01000008.1|WP_101193139.1|89282_90860_-|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB
MKLLATRRLLRILRVVIRYRLDDLLLALPLPWPLRLLGALLPWRWLPRKPLALSRGERLRLALEDLGPIFIKFGQLLSTRRDLLPLDIADELARLQDQVPPFPPAQAIARIEQQLGAPVSQLFARFDEQPLASASVAQVHAAQLKSGEEVVVKVIRPGLKPIIRQDLAWLFLLARSAERLSADARRLRPMEVVEDYEKTIYDELDLLREAANASQLRRNFEASPLIYVPQIHWPLCRHKVLVMERIYGIPVTDLNALAAQRTDMKKLAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRTPWEPQYIAIDCGIVGSLTAEDQDYLARNLLAFFKRDYRKVAQLHIDSGWVPAHTRVNEFEAAIRTVCEPIFERPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPFLERWMRERISPLQLLRNLQNQAEQVPQLSQMARQTLDRLNHPQPVAPLRASWPGRLIGAALLLGAASQGLLLSMAAWPAWLMLGGGLWLLLRR
>NZ_PIYS01000008.1|WP_101193138.1|88822_89224_-|phosphoribosyl-AMP-cyclohydrolase
MSDWLDDINWNSDGLIPAIAQDYQSGRILMLAWMNREALALTVAEQRAIYWSRSRGKLWRKGEDSGHVQKLHELRLDCDADVIIMQVEQLGGIACHTGRQSCFYKVLRDGAWVAVDPVLKDPQAIYHAGHTHE
>NZ_PIYS01000008.1|WP_093984612.1|88497_88830_-|phosphoribosyl-ATP-diphosphatase
MSDTLSRLADVLEARKGAAADSSYVASLYHKGLNKILEKVGEESVETILAAKDAALSGDCSELIYETADLWFHSLVMLAALGQHPQAVLDELERRFGLSGHAEKAARQPS
>NZ_PIYS01000008.1|WP_093984611.1|88238_88469_-|twin-arginine-translocase-TatA/TatE-family-subunit
MGLGGISIWQLLIILLIVIMLFGTKRLKSLGSDLGDAIKGFRKSMNTEEDKPAVEDKAGQTLQGEARKVEEPAKKD
>NZ_PIYS01000008.1|WP_101193137.1|87905_88226_-|Sec-independent-protein-translocase-subunit-TatB
MFDVGFAELLVVGLVALLVLGPERLPVAARMAGLWIGRLKRSFSNLKAEVEREIGADEIRRQLHNERILEMERELSQSVLPPAPGSSAASKSAADAPPAPDKSTPP
>NZ_PIYS01000008.1|WP_101193136.1|87129_87909_-|twin-arginine-translocase-subunit-TatC
MTEKLTSDQEMPLVAHLSELRDRLLRCVVAVLLIFIGLFYFAQDIYALVAAPLRAYLPEGATMIATGVASPFLTPFKLTLVISLFLAMPVVLQQIWGFIAPGLYQHEKRIAVPLLISSILLFYAGMAFAYFVVFPIMFGFFASVTPDGVAMMTDIGQYLDFVLTLFFAFGVAFEIPIATFLLIWAGIVSVETLVKSRPYVIVGCFVVGMFLTPPDVFSQALLAIPMWLLFEAGLIFGRLVSKRPPEDSEPSDQPPAAQS
>NZ_PIYS01000008.1|WP_170307333.1|94029_95361_+|IS4-family-transposase
MSLQQQLLDLGELFNFSDLSTFTQNIPIEWVASALDLSAQATIRRRRLPSDQVLWLVLGMALFRDEPVHEVARRLNICAQGLASHDLLARSGVTEARKRLGADPVEWLFRQTGNQWGCERYEGDTWQGLQVLAVDGALLRTPDTPELREHFGSGNTSTERQTPFPMLRLVALMNVRSHLILDAQVSPYRRSEMRLADEFMQQIPNQSVTLFDKGFWSADLLLRLGAAGESRHWLIPARQGLVGEEVARYGKGDRLLRMKVSAQARKRNPDLPTHWEVREVSYAVKDKIKTVLTSLPADTYSAKTIAKLYQERWEIELGFRDIKSSLQQNAMTLRSKVTELVYQEVWGLLLAYNIIRREAGQAAVAFGRSPGDIRFKPVAQYIAVQLIVMAAANPISATGTRLSELRAGIGGLFLDHRPRPSRPRTVKISKTRYPVDRKAAPLK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_PIYS01000008_2	2.1\|93757\|17\|NZ_PIYS01000008\|CRISPRCasFinder	93757-93773	17	NZ_PIYS01000025.1	581-597	2	0.882
NZ_PIYS01000008_2	2.1\|93757\|17\|NZ_PIYS01000008\|CRISPRCasFinder	93757-93773	17	NZ_PIYS01000034.1	543-559	2	0.882
NZ_PIYS01000008_2	2.1\|93757\|17\|NZ_PIYS01000008\|CRISPRCasFinder	93757-93773	17	NZ_PIYS01000007.1	581-597	2	0.882

1. spacer 2.1|93757|17|NZ_PIYS01000008|CRISPRCasFinder matches to position: 581-597, mismatch: 2, identity: 0.882

tgcggtgaagaagccgg	CRISPR spacer
tgccgtgaagaagctgg	Protospacer
*** **********.**

2. spacer 2.1|93757|17|NZ_PIYS01000008|CRISPRCasFinder matches to position: 543-559, mismatch: 2, identity: 0.882

tgcggtgaagaagccgg	CRISPR spacer
tgccgtgaagaagctgg	Protospacer
*** **********.**

3. spacer 2.1|93757|17|NZ_PIYS01000008|CRISPRCasFinder matches to position: 581-597, mismatch: 2, identity: 0.882

tgcggtgaagaagccgg	CRISPR spacer
tgccgtgaagaagctgg	Protospacer
*** **********.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_PIYS01000027

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

238590 : 276372

Pseudomonas_phage(92.5%)

integrase,tail,transposase,lysis,head

attL 240840:240855|attR 246229:246244

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024308341.1\|238590_238938_-	hypothetical protein	J9SGX4	Pseudomonas_phage	1.7e-37	63.5
WP_101194120.1\|238955_239504_-	hypothetical protein	J9RWB3	Pseudomonas_phage	8.7e-73	74.2
WP_101194121.1\|239503_240070_-	regulatory protein GemA	Q5ZR14	Pseudomonas_phage	4.5e-56	58.8
WP_101194122.1\|240071_240296_-	hypothetical protein	NA	NA	NA	NA
WP_101194123.1\|240297_240918_-	DUF3164 family protein	A0A0S4L2U9	Pseudomonas_phage	1.5e-49	46.9
240840:240855	attL	NA	NA	NA	NA
WP_101194124.1\|240910_241276_-	DUF5406 family protein	B0ZSH8	Halomonas_phage	5.0e-32	64.5
WP_101194125.1\|241268_241451_-	hypothetical protein	NA	NA	NA	NA
WP_101194126.1\|241450_241705_-	hypothetical protein	NA	NA	NA	NA
WP_101194127.1\|241701_242052_-	hypothetical protein	Q5ZR06	Pseudomonas_phage	2.6e-14	42.6
WP_101194128.1\|242054_242480_-	host nuclease inhibitor protein	J9SNQ5	Pseudomonas_phage	9.0e-17	41.2
WP_101194129.1\|242483_243653_-	AAA family ATPase	A0A0S4L1G1	Pseudomonas_phage	5.6e-170	79.7
WP_101194130.1\|243652_245422_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0S4L2U5	Pseudomonas_phage	1.0e-207	63.9
WP_101194131.1\|245425_246349_-	hypothetical protein	A0A0S4L093	Pseudomonas_phage	1.3e-81	59.6
246229:246244	attR	NA	NA	NA	NA
WP_101194132.1\|246348_246627_-	hypothetical protein	NA	NA	NA	NA
WP_101194133.1\|246642_246942_-	helix-turn-helix domain-containing protein	A0A0S4L7B4	Pseudomonas_phage	2.5e-34	79.4
WP_101194134.1\|247045_247306_-	hypothetical protein	A0A0S4L062	Pseudomonas_phage	1.2e-27	75.6
WP_101194135.1\|247298_247787_-	hypothetical protein	J9SNL8	Pseudomonas_phage	2.2e-83	89.5
WP_101194136.1\|247905_248157_+	hypothetical protein	NA	NA	NA	NA
WP_101194137.1\|248175_248433_-	DNA-binding protein	NA	NA	NA	NA
WP_101194138.1\|248514_249087_-	hypothetical protein	NA	NA	NA	NA
WP_157825306.1\|249183_249657_+	helix-turn-helix domain-containing protein	A0A0S4L3B5	Pseudomonas_phage	2.3e-13	46.5
WP_101194140.1\|249681_250179_+	hypothetical protein	NA	NA	NA	NA
WP_101194141.1\|250256_250790_+	DUF4156 domain-containing protein	NA	NA	NA	NA
WP_101194142.1\|250830_251181_+	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_083431656.1\|251572_251830_+	hypothetical protein	Q5ZQZ2	Pseudomonas_phage	1.4e-20	57.6
WP_101194143.1\|251832_252690_+	transglycosylase SLT domain-containing protein	J9SH25	Pseudomonas_phage	5.5e-82	72.1
WP_101194144.1\|252702_253326_+\|lysis	lysis protein	J9SVX5	Pseudomonas_phage	1.0e-56	58.5
WP_101194145.1\|253325_253661_+	DUF2730 family protein	J9STR5	Pseudomonas_phage	6.6e-31	61.3
WP_101194146.1\|253668_253965_+	hypothetical protein	J9SNG3	Pseudomonas_phage	5.1e-27	63.3
WP_101194147.1\|253967_254516_+	DUF3486 family protein	J9SH37	Pseudomonas_phage	5.3e-54	68.7
WP_157719668.1\|254515_254665_+	hypothetical protein	NA	NA	NA	NA
WP_170307396.1\|254664_254832_+	hypothetical protein	A0A2H4P784	Pseudomonas_phage	5.1e-08	51.7
WP_101194148.1\|254824_256483_+	hypothetical protein	J9RWF2	Pseudomonas_phage	2.2e-276	84.4
WP_101194149.1\|256476_258045_+	DUF935 domain-containing protein	J9SVY0	Pseudomonas_phage	5.7e-218	73.4
WP_101194150.1\|258034_259282_+	hypothetical protein	J9STS2	Pseudomonas_phage	2.0e-157	64.2
WP_101194151.1\|259381_259957_+	phage virion morphogenesis protein	J9SNH3	Pseudomonas_phage	3.0e-55	60.1
WP_101194193.1\|260168_261278_+	hypothetical protein	J9SH47	Pseudomonas_phage	4.0e-133	69.6
WP_101194152.1\|261281_261689_+	hypothetical protein	J9RWG0	Pseudomonas_phage	2.9e-49	75.2
WP_101194153.1\|261703_262597_+\|head	Mu-like prophage major head subunit gpT family protein	J9SVY7	Pseudomonas_phage	1.8e-123	72.4
WP_170307397.1\|262681_263014_+	hypothetical protein	J9STT1	Pseudomonas_phage	1.0e-07	40.2
WP_101194154.1\|263016_263532_+	DUF1320 domain-containing protein	J9SNI4	Pseudomonas_phage	2.6e-50	60.8
WP_101194155.1\|263531_263972_+	hypothetical protein	NA	NA	NA	NA
WP_101194156.1\|263968_264178_+	hypothetical protein	NA	NA	NA	NA
WP_101194157.1\|264190_264964_+	hypothetical protein	L7P812	Pseudomonas_phage	1.0e-66	54.7
WP_101194158.1\|264966_265482_+	hypothetical protein	J9STK7	Pseudomonas_phage	3.6e-28	45.7
WP_157825308.1\|265761_266220_-	hypothetical protein	NA	NA	NA	NA
WP_157825309.1\|266316_269319_+\|tail	phage tail length tape measure family protein	H1ZZF9	Pseudomonas_virus	3.5e-99	39.2
WP_101194160.1\|269320_270160_+	hypothetical protein	H6WU10	Pseudomonas_phage	2.0e-68	44.2
WP_101194161.1\|270159_271041_+	hypothetical protein	A0A0M3MX86	Stenotrophomonas_phage	6.6e-38	35.3
WP_101194162.1\|271040_272744_+	hypothetical protein	A0A125RND7	Pseudomonas_phage	8.5e-167	57.0
WP_101194163.1\|272888_273710_+	phage BR0599 family protein	L7P7Y4	Pseudomonas_phage	1.2e-89	55.7
WP_101194164.1\|273711_273942_+	hypothetical protein	A0A076FRB9	Pseudomonas_phage	1.4e-19	60.8
WP_101194195.1\|273950_274181_+	hypothetical protein	L7P837	Pseudomonas_phage	9.4e-21	65.8
WP_101194165.1\|274164_276372_+	hypothetical protein	Q6TM49	Pseudomonas_phage	7.0e-230	57.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_PIYS01000004

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

23883 : 34067

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101192807.1\|23883_25707_-	lipid A export permease/ATP-binding protein MsbA	W8CYL7	Bacillus_phage	7.9e-54	29.7
WP_101192808.1\|25742_26354_+	phosphotransferase	NA	NA	NA	NA
WP_101192809.1\|26576_28565_-	acyltransferase	A0A193GZ69	Enterobacter_phage	8.6e-62	43.6
WP_101192810.1\|28746_29811_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.5e-105	54.9
WP_101192811.1\|29807_30686_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	7.1e-109	66.0
WP_101192812.1\|30682_31225_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.0e-53	56.4
WP_101192813.1\|31221_32124_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.7e-34	36.8
WP_101192816.1\|32275_33460_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_101192814.1\|33443_34067_+	CatB-related O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	2.5e-31	46.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

8. NZ_PIYS01000018

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

30114 : 136182

114

uncultured_Caudovirales_phage(36.21%)

integrase,capsid,holin,head,portal,protease,terminase,tail,plate

attL 85498:85543|attR 118492:118537

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_093984972.1\|30114_30600_-\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
WP_101193565.1\|30632_31622_-	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_101193566.1\|31618_33508_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	1.9e-98	36.5
WP_101193567.1\|33523_34138_-	esterase	NA	NA	NA	NA
WP_101193568.1\|34181_34658_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_093984823.1\|34674_35694_-	chemotaxis protein CheB	NA	NA	NA	NA
WP_101193569.1\|35686_43288_-	Hpt domain-containing protein	W8CYM9	Bacillus_phage	2.0e-13	34.2
WP_093984592.1\|43315_44176_-	protein-glutamate O-methyltransferase	NA	NA	NA	NA
WP_093984575.1\|44247_46296_-	type IV pili methyl-accepting chemotaxis transducer N-terminal domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.0e-09	50.6
WP_093984574.1\|46442_46979_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_093984573.1\|47031_47397_-	response regulator	W8CYM9	Bacillus_phage	1.5e-12	36.8
WP_093984572.1\|47443_47851_-	response regulator	W8CYM9	Bacillus_phage	2.8e-15	35.7
WP_101193570.1\|48088_49042_+	glutathione synthase	NA	NA	NA	NA
WP_093984570.1\|49128_50016_+	energy transducer TonB	NA	NA	NA	NA
WP_101193571.1\|50060_50627_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_093984568.1\|50623_51049_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_101193572.1\|51066_51588_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA
WP_101193573.1\|51584_52595_+	aspartate carbamoyltransferase catalytic subunit	A0A1J0F9B8	Only_Syngen_Nebraska_virus	5.4e-28	34.0
WP_101193574.1\|52594_53866_+	dihydroorotase	NA	NA	NA	NA
WP_101193575.1\|53923_54391_-	protein-export chaperone SecB	NA	NA	NA	NA
WP_093984563.1\|54423_54678_-	glutaredoxin 3	V9QKN6	Rhizobium_phage	1.5e-11	42.3
WP_101193576.1\|54679_55093_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_101193577.1\|55215_56751_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_101193578.1\|56910_58152_+	murein hydrolase activator EnvC	A0A0K2CNY2	Brevibacillus_phage	3.4e-08	34.9
WP_101193579.1\|58178_59459_+	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	1.2e-27	29.7
WP_093984558.1\|59507_60263_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_101193580.1\|60309_61065_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_101193581.1\|61146_61902_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_101193582.1\|62021_62780_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_101193583.1\|62875_63619_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	A0A2H4UVM0	Bodo_saltans_virus	2.5e-06	26.6
WP_101193584.1\|63742_64381_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_093984553.1\|64381_64975_-	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_101193585.1\|65098_65491_+	acetyl-CoA sensor PanZ family protein	NA	NA	NA	NA
WP_101193586.1\|65495_66596_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_101193587.1\|66646_68863_+	AsmA family protein	NA	NA	NA	NA
WP_093984549.1\|68859_69927_+	A/G-specific adenine glycosylase	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	1.2e-25	32.7
WP_093984548.1\|69923_70196_+	oxidative damage protection protein	NA	NA	NA	NA
WP_101193588.1\|70532_71759_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	2.7e-183	77.9
WP_157825285.1\|72186_73164_+	hypothetical protein	NA	NA	NA	NA
WP_101193590.1\|73333_73558_+	AlpA family phage regulatory protein	A0A1B0VNF0	Pseudomonas_phage	1.6e-17	73.7
WP_101193591.1\|73558_73912_+	hypothetical protein	A0A1B0VRK7	Pseudomonas_phage	2.6e-30	59.5
WP_170307381.1\|74211_74373_+	hypothetical protein	A0A1B0VP73	Pseudomonas_phage	3.1e-10	73.5
WP_101193592.1\|74369_74708_+	hypothetical protein	NA	NA	NA	NA
WP_101193593.1\|74704_74950_+	hypothetical protein	NA	NA	NA	NA
WP_101193594.1\|74946_75261_+	hypothetical protein	NA	NA	NA	NA
WP_157825287.1\|75266_75407_+	hypothetical protein	NA	NA	NA	NA
WP_101193595.1\|75394_76267_+	toprim domain-containing protein	A0A1B0VML8	Pseudomonas_phage	1.1e-82	60.4
WP_101193596.1\|76245_78012_+	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	6.2e-96	38.8
WP_101193597.1\|78014_78320_+	hypothetical protein	NA	NA	NA	NA
WP_101193598.1\|79176_79362_+	hypothetical protein	NA	NA	NA	NA
WP_093984547.1\|81003_81777_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.5e-14	24.2
WP_101193600.1\|81789_82542_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_093984545.1\|82591_83287_+	ABC transporter permease	NA	NA	NA	NA
WP_093984544.1\|83283_83973_+	ABC transporter permease	NA	NA	NA	NA
WP_101193601.1\|83982_85194_+	methyltransferase	NA	NA	NA	NA
85498:85543	attL	NA	NA	NA	NA
WP_101193602.1\|86229_86598_+	hypothetical protein	NA	NA	NA	NA
WP_101193603.1\|86639_87698_-\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	1.2e-155	80.8
WP_101193604.1\|87694_89452_-\|terminase	terminase ATPase subunit family protein	Q9ZXM5	Pseudomonas_virus	4.6e-285	83.6
WP_101193605.1\|89603_90461_+\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	3.1e-85	60.4
WP_101193606.1\|90494_91565_+\|capsid	phage major capsid protein, P2 family	A0A2H4JCR7	uncultured_Caudovirales_phage	4.9e-144	75.6
WP_101193607.1\|91568_92282_+\|terminase	terminase	A0A2H4J948	uncultured_Caudovirales_phage	9.6e-72	63.7
WP_101193608.1\|92383_92848_+\|head	head completion/stabilization protein	A0A2H4JCS4	uncultured_Caudovirales_phage	1.4e-42	59.6
WP_101193609.1\|92847_93057_+\|tail	tail protein X	A0A2H4J946	uncultured_Caudovirales_phage	3.0e-26	81.2
WP_101193610.1\|93537_93927_+	hypothetical protein	NA	NA	NA	NA
WP_101193611.1\|93929_94211_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_101193612.1\|94207_95047_+	DUF3380 domain-containing protein	Q9ZXL6	Pseudomonas_virus	7.5e-92	65.6
WP_101193613.1\|95043_95487_+	peptidase	Q9ZXL5	Pseudomonas_virus	2.7e-24	52.1
WP_101193614.1\|95589_96114_+\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	3.1e-59	73.2
WP_101193615.1\|96106_96559_+	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	2.5e-49	69.3
WP_101193616.1\|96634_97171_+\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	1.6e-50	57.2
WP_101193617.1\|97167_97521_+	GPW/gp25 family protein	A0A2H4JE52	uncultured_Caudovirales_phage	1.1e-44	78.1
WP_101193618.1\|97517_98414_+\|plate	baseplate J/gp47 family protein	D5LGZ3	Escherichia_phage	6.2e-84	55.8
WP_101193619.1\|98406_98955_+\|tail	phage tail protein I	E5FFH2	Burkholderia_phage	2.8e-47	51.7
WP_101193620.1\|98954_100859_+\|tail	phage tail protein	A0A077SK37	Escherichia_phage	6.4e-30	32.3
WP_157825291.1\|100948_101386_+\|tail	phage tail protein	A0A2H4J924	uncultured_Caudovirales_phage	6.3e-42	76.6
WP_101193622.1\|101526_102714_+\|tail	phage tail sheath protein	A0A2H4JCP8	uncultured_Caudovirales_phage	2.5e-197	86.8
WP_101193623.1\|102764_103280_+\|tail	phage major tail tube protein	A0A2H4J916	uncultured_Caudovirales_phage	3.3e-74	77.2
WP_101193624.1\|103364_103691_+\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	5.8e-24	56.5
WP_101193625.1\|103699_103822_+\|tail	GpE family phage tail protein	E5E3Q0	Burkholderia_phage	4.5e-06	61.1
WP_101193626.1\|103811_106397_+\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	2.5e-162	43.6
WP_101193627.1\|106418_106859_+\|tail	phage tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	5.4e-65	84.9
WP_101193628.1\|106855_108115_+	phage late control D family protein	A0A2H4JAV0	uncultured_Caudovirales_phage	1.8e-182	76.4
WP_101193629.1\|108143_108329_-	hypothetical protein	NA	NA	NA	NA
WP_101193630.1\|108426_109089_-	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	2.1e-41	43.4
WP_170307385.1\|109160_109517_-	helix-turn-helix domain-containing protein	A0A2H4JFL3	uncultured_Caudovirales_phage	1.5e-33	60.0
WP_101193632.1\|109597_109798_+	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	4.2e-17	72.6
WP_101193633.1\|109827_110295_+	hypothetical protein	Q9ZXJ2	Pseudomonas_virus	3.4e-41	52.9
WP_101193634.1\|110291_110603_+	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	1.7e-20	53.4
WP_101193635.1\|110599_110965_+	hypothetical protein	NA	NA	NA	NA
WP_101193787.1\|111038_111272_+	hypothetical protein	Q9ZXI9	Pseudomonas_virus	4.3e-05	39.4
WP_101193788.1\|111291_114000_+	toprim domain-containing protein	A0A2H4J936	uncultured_Caudovirales_phage	2.0e-287	54.3
WP_157825293.1\|114052_114196_+	hypothetical protein	NA	NA	NA	NA
WP_101193789.1\|114279_114591_+	hypothetical protein	Q9ZXI7	Pseudomonas_virus	2.2e-25	62.1
WP_101193636.1\|115336_115534_+	hypothetical protein	Q9ZXI5	Pseudomonas_virus	1.4e-20	77.8
WP_101193637.1\|115523_115850_+	hypothetical protein	A0A2H4JE76	uncultured_Caudovirales_phage	1.2e-08	50.0
WP_101193638.1\|115842_116475_+	hypothetical protein	Q5QF31	Pseudomonas_virus	1.6e-57	55.9
WP_101193639.1\|116471_116753_+	hypothetical protein	NA	NA	NA	NA
WP_101193640.1\|116745_116952_+	hypothetical protein	A0A2H4J958	uncultured_Caudovirales_phage	7.1e-12	57.1
WP_044727301.1\|117021_117234_+	hypothetical protein	NA	NA	NA	NA
WP_101193641.1\|117230_118373_+\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	2.9e-70	39.1
WP_101193642.1\|118841_122318_+	type I restriction-modification system endonuclease	Q5YA94	Bacillus_phage	2.4e-14	25.9
118492:118537	attR	NA	NA	NA	NA
WP_058073991.1\|122397_123042_+	hypothetical protein	NA	NA	NA	NA
WP_101193643.1\|123038_123743_+	hypothetical protein	NA	NA	NA	NA
WP_101193644.1\|123743_124427_+	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
WP_101193645.1\|124483_126025_+	SAM-dependent DNA methyltransferase	J7I0U9	Acinetobacter_phage	1.4e-27	27.2
WP_101193646.1\|126021_127317_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_101193647.1\|127352_128219_+	hypothetical protein	NA	NA	NA	NA
WP_101193648.1\|128466_130278_+	sensor histidine kinase	NA	NA	NA	NA
WP_101193649.1\|130274_131636_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_093984528.1\|131747_133289_-	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	2.1e-124	46.5
WP_101193650.1\|133460_134354_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_101193651.1\|134449_135247_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_093984525.1\|135257_135653_-	RNA-binding protein	NA	NA	NA	NA
WP_093984524.1\|135720_136182_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

9. NZ_PIYS01000009

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_PIYS01000009_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_PIYS01000009_1

12421-12568

Orphan

Consensus_repeat	Method
GTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_PIYS01000009_1

>merge|NZ_PIYS01000009|1|12421-12568|CRISPRCasFinder
GTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCC

>NZ_PIYS01000009|1|1|12421-12568|CRISPRCasFinder
GTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCC	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GTGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_PIYS01000009.1\|WP_101193153.1\|10651_12133_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_PIYS01000009.1\|WP_101193185.1\|2375_2729_+\|DUF4398-domain-containing-protein	unknown	unknown	gnl\|CDD\|379572
NZ_PIYS01000009.1\|WP_101193154.1\|13678_15160_+\|DNA-recombination-protein-RmuC	unknown	unknown	gnl\|CDD\|376878
NZ_PIYS01000009.1\|WP_101193147.1\|4572_5478_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_PIYS01000009.1\|WP_101193152.1\|8554_10570_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_PIYS01000009.1\|WP_101193158.1\|21854_22622_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NZ_PIYS01000009.1\|WP_101193160.1\|23439_24237_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226164
NZ_PIYS01000009.1\|WP_101193157.1\|19965_21840_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|235865
NZ_PIYS01000009.1\|WP_101193148.1\|5436_5778_-\|DMT-family-protein	unknown	unknown	gnl\|CDD\|377316
NZ_PIYS01000009.1\|WP_101193150.1\|6336_6660_+\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378965
NZ_PIYS01000009.1\|WP_101193161.1\|24233_25085_-\|putative-selenate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|275346
NZ_PIYS01000009.1\|WP_101193145.1\|2728_3526_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_PIYS01000009.1\|WP_101193156.1\|19523_19853_+\|AzlD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226827
NZ_PIYS01000009.1\|WP_101193151.1\|7157_8354_-\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_PIYS01000009.1\|WP_101193146.1\|3898_4465_-\|exonuclease-domain-containing-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99836
NZ_PIYS01000009.1\|WP_101193155.1\|15167_18644_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223664
NZ_PIYS01000009.1\|WP_101193159.1\|22618_23446_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226165
NZ_PIYS01000009.1\|WP_170307365.1\|13275_13626_+\|sel1-repeat-family-protein	unknown	unknown	unknown
NZ_PIYS01000009.1\|WP_093987158.1\|3553_3835_-\|pyrimidine/purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|377724
NZ_PIYS01000009.1\|WP_101193186.1\|18858_19527_+\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215

Protein	Function_ID	Function_description	E-value
NZ_PIYS01000009.1\|WP_101193153.1\|10651_12133_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_PIYS01000009.1\|WP_101193185.1\|2375_2729_+\|DUF4398-domain-containing-protein	gnl\|CDD\|379572	pfam14346, DUF4398, Domain of unknown function (DUF4398). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 127 and 269 amino acids in length.	0.00146609
NZ_PIYS01000009.1\|WP_101193154.1\|13678_15160_+\|DNA-recombination-protein-RmuC	gnl\|CDD\|376878	pfam02646, RmuC, RmuC family. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures.	1.38967e-119
NZ_PIYS01000009.1\|WP_101193147.1\|4572_5478_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	1.03609e-121
NZ_PIYS01000009.1\|WP_101193152.1\|8554_10570_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_PIYS01000009.1\|WP_101193158.1\|21854_22622_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	3.28241e-78
NZ_PIYS01000009.1\|WP_101193160.1\|23439_24237_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226164	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	6.93824e-93
NZ_PIYS01000009.1\|WP_101193157.1\|19965_21840_+\|MFS-transporter	gnl\|CDD\|235865	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase.	3.93159e-167
NZ_PIYS01000009.1\|WP_101193148.1\|5436_5778_-\|DMT-family-protein	gnl\|CDD\|377316	pfam04342, DMT_6, Putative member of DMT superfamily (DUF486). This family contains several proteins of uncharacterized function. The family is represented in the Transport classification database as 2.A.7.34, though the exact nature of what is transported is not known.	9.27975e-58
NZ_PIYS01000009.1\|WP_101193150.1\|6336_6660_+\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|378965	pfam12836, HHH_3, Helix-hairpin-helix motif. The HhH domain is a short DNA-binding domain.	2.31514e-21
NZ_PIYS01000009.1\|WP_101193161.1\|24233_25085_-\|putative-selenate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|275346	TIGR04553, ABC_peri_selen, putative selenate ABC transporter periplasmic binding protein. Members of this family ABC transporter periplasmic binding proteins and represent one clade within a larger family that includes phosphate, phosphite, and phosphonate transporters. All members of the seed alignment occur near a gene for SelD, the selenium-activating protein needed to make selenocysteine or selenouridine. Context therefore suggests members should be able to transport selenate, although transporting other substrates as well (e.g. phosphonates) is possible. This model has no overlap with TIGR03431, whose members are found regularly with phosphonate catabolism operons.	9.07223e-128
NZ_PIYS01000009.1\|WP_101193145.1\|2728_3526_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	1.12948e-37
NZ_PIYS01000009.1\|WP_101193156.1\|19523_19853_+\|AzlD-domain-containing-protein	gnl\|CDD\|226827	COG4392, COG4392, Predicted membrane protein [Function unknown].	2.06469e-14
NZ_PIYS01000009.1\|WP_101193151.1\|7157_8354_-\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_PIYS01000009.1\|WP_101193146.1\|3898_4465_-\|exonuclease-domain-containing-protein	gnl\|CDD\|99836	cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins. This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional homolog of either ERI-1 or 3'hExo.	6.50938e-61
NZ_PIYS01000009.1\|WP_101193155.1\|15167_18644_-\|sensor-histidine-kinase	gnl\|CDD\|223664	COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only].	1.22562e-85
NZ_PIYS01000009.1\|WP_101193159.1\|22618_23446_-\|ABC-transporter-permease	gnl\|CDD\|226165	COG3639, COG3639, ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism].	8.42014e-65
NZ_PIYS01000009.1\|WP_093987158.1\|3553_3835_-\|pyrimidine/purine-nucleoside-phosphorylase	gnl\|CDD\|377724	pfam06865, DUF1255, Protein of unknown function (DUF1255). This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown.	3.37334e-52
NZ_PIYS01000009.1\|WP_101193186.1\|18858_19527_+\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	1.71101e-53

>NZ_PIYS01000009.1|WP_101193153.1|10651_12133_+|glutamate--tRNA-ligase
MTTVRTRIAPSPTGDPHVGTAYIALFNLCFARQHGGQFILRIEDTDQLRSSRESEQQIFDALRWLGIEWDEGPDVGGPHGPYRQSERGHIYKKYSDELVAKGHAFPCFCSAERLDQVRAEQQARKETPRYDGHCMHLSAEEAEQRIAAGESHVVRMKVPSEGVCVVPDLLRGAVEIPWDRMDMQVLMKADGLPTYFLANVVDDHLMGITHVLRGEEWLPSAPKLIKLYEYFGWEQPQLVYMPLLRNPDKSKLSKRKNPTSITFYERMGFLPEAMLNYLGRMGWSMPDEREKFSLAEMIEHFDIQRVSLGGPIFDLEKLSWLNGQWLRELPVERFAAEVQQWALNPQYLMKIAPHVQGRIETFSQLAPLAAMFFMGGVPLQASLFEHKKLQADQVRLLLQLILWKLEALRQWNKDNITAIIQQVAEHQGLKLRDVMPLIFPAITGQASSVSVLDAMEILGPDLSRFRLRQAVELLGSPSKKESKEWEKLLAELK
>NZ_PIYS01000009.1|WP_101193152.1|8554_10570_+|excinuclease-ABC-subunit-B
MAAFELVTRYTPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLAPNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRLSATKALLEREDAIIVCTVSSIYGLGDPQAYLKMVLHLDRGDRIDQRELLRRLASLQYSRNDMDFARASFRVRGDVIDIYPAESDLEAIRVELFDDEVESISAFDPLTGEVLQKLPRFTFYPKSHYVTPRETLLEAVEQIKIELKQRLDYLRGENKLVAAERLEQRTRFDLEMILELGYCNGIENYSRYLSGRGPGLPPPTLYDYLPANALLVIDESHVSVPQVGAMYKGDRSRKETLVEYGFRLPSALDNRPLRFEEWEAISPQTIFVSATPGPYEAAHSGRVIEQVVRPTGLVDPQIEVRPARSQVDDLLSEIRLRVAAEERVLVTTLTKRMAEDLTDYLSDHDVRVRYLHSDIDTVERVEIIRDLRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADQMTGSMQRAIDETERRRAKQLAFNAEHGIVPKGVKKDIRDILEGAVVPGARSNKRKAQARAAEETARYEAQLRSPAELNKRIRQLEEQMYQSARELQFEEAAQLRDEIQALRERLLAL
>NZ_PIYS01000009.1|WP_101193151.1|7157_8354_-|aspartate/tyrosine/aromatic-aminotransferase
MSLFSAVEMAPRDPILGLNEAFNADPRSSKVNLGVGVYFTDEGRIPLLRAVAAAEQARIQAHAPRGYLPIEGIASYDSAVQKLLFGQDAALLQAGRVITTQSLGGTGALKIGADFLKRLLPEACVAISNPSWENHRALFESAGFPVHNYRYYDAASQGVDRQGMLDDLRALPARSIVVLHACCHNPTGVDLELDDWKAVLEVLREREHVPFLDIAYQGFGDGIDEDAFAVRLFAESGLNFLVSSSFSKSFSLYGERVGALSIVTDSQEESTRVLSQVKRVIRTNYSNPPTHGATVVGNVLNSKELRAMWEQELAEMRERIRDMRTTMVEQLASLGAKRDFAFVARQRGMFSYSGLTQEQVERLKSEFGIYAVGTGRICVAALNSGNIRAVTEAIVKVL
>NZ_PIYS01000009.1|WP_101193150.1|6336_6660_+|helix-hairpin-helix-domain-containing-protein
MKKALVASLLFSCLSFSSLAVQAAESMAPTALPAASQAEVAGLIDVNSADAATLQRELVGIGAVKAQAIVDYRQAHGAFQSVEELLEVKGIGVATLEKNRARLSVSP
>NZ_PIYS01000009.1|WP_101193148.1|5436_5778_-|DMT-family-protein
MPVWMQTAALLCLSNVFMTFAWYGHLKTLNSKPWLIAALLSWGIALFEYLLMVPANRIGYTVLSVGQLKIMQEVITLAIFVPFSVLYMQQPLKLDYLWAGLCLLGAVYFIFRS
>NZ_PIYS01000009.1|WP_101193147.1|4572_5478_+|NAD(P)-dependent-oxidoreductase
MNVAFIGLGVMGYPMAGHLQRQGHRVRVYNRTPAKALQWSAEYAGDCADTPRQAAQGAELVMCCVGNDEDLRQVLLGEQGAFSGMSPGSVLVDHTTASADVARELAIQAAERELGFIDAPVSGGQAGAINGQLTVMVGGEALWFARAEPVMACYARRVQHMGPVGSGQLTKMVNQICIGGLLQGLAEALHFAQCAGLDGEAAMAVISQGAAQSWQLENRHKTMLEGRFDFGFAVDWMRKDLAIVLDEARRNGAQLPVTALVDQFYADVQRLGGGRWDTSSLIARLHAPLAAEDEIHGTQQA
>NZ_PIYS01000009.1|WP_101193146.1|3898_4465_-|exonuclease-domain-containing-protein
MPAWLVIDLEATTDEGGWPLEEMEIIEIGAVLVTCGGEEISQWQHFVRPVRHPQLTDFCRQLTQIEQYQLNNAAGFAQASQALDEWLASQTRTVLGWCSWGDYDRRQWHLQASQEHAQSSLLHLPHHNLKKHYARQQRLGRQVGLRRALQHAGLQFCGQQHRALDDARNTARLLNYCRLPGHIETGTP
>NZ_PIYS01000009.1|WP_093987158.1|3553_3835_-|pyrimidine/purine-nucleoside-phosphorylase
MFKVNEYFGGTVKSIAFTQHEGPATIGVMAPGEYEFGTSQAEVMHVVSGALTVKLPGSEQWQTFAAGSQFNVPADSKFQLQVAVDTAYLCEYR
>NZ_PIYS01000009.1|WP_101193145.1|2728_3526_+|OmpA-family-protein
MRVLFCSMVLLLAGCASPQHSEEALVPAREAFQQVKSDPQVLQYAAKDVLRAGESLARAERLAGYWGSAGDVQHFAYLSQAYSAIAREHTQQALNRQRLQRLQGERERLQLSLREARLLSVQQHSQWLEDQVLSLQTEGGERGLVLSFADMAFDTGRAELKAVASRTLLKIVQLLQLNPARVVRVEGYSDSLGNKALNMQLSQQRAQAVADALVDLGIRRERVEVVGYGEAYPLSENASARGRAQNRRVEVVFSDERGRLPPARP
>NZ_PIYS01000009.1|WP_101193185.1|2375_2729_+|DUF4398-domain-containing-protein
METKGLLMLGLLALLSGCAHDPAPLEQLRLSEQALQQAYDAGVPATARALQLAEQKLARARKNMAEEDFKRARVLAEQAELDARLAQAQQLSVQSEAELDVLLLQLQRLRKQLSEVN
>NZ_PIYS01000009.1|WP_170307365.1|13275_13626_+|sel1-repeat-family-protein
MQIVMKPTLAARQSRHQRMSMHLAMWLLDTPPLAQTAPIKRFAVQLLKPAAKQGVVAAQSRLGCLLCHEAADLRDRRVGQEMLRLAARAGDHGAREALECLTAQLRLPSLRSSRQG
>NZ_PIYS01000009.1|WP_101193154.1|13678_15160_+|DNA-recombination-protein-RmuC
MPADLPTLPLLLSVLLVALPLLGLLWRQQRRLDALRLLQSHQRELLQQAQQRVQTLDAQVQEAVQHKEQWQQLHARQQAQLAALQRERELLQAQQQQARADAQAWQAERQQQVSELRRLDAQRSALAAELREQQEHQQQRLNDLQGARDSLRAQFAELAGQIFEEREQRFAEHSQQRLGQLLEPLKERIQAFEKRVEESYQQEARERFSLGHELQRLQQLNQRLGDEATRLSRALQGQKQQGNWGELVLERVLEHAGLHKGREYETQVSLKGADGQRLQPDVLIRLPGERQIIVDAKVSLQAYQQAVAAPDETARQAALRQHVQSLRGHLKNLASKDYSRLEGLHSLDFVLLFVPLEAAFAAALEQDGGLFQEAFEQRIVIVSPTTLLATLRVIDSLWRQERQGQNAREIAERAGWLYDKFTLFVADLDEIGTRLQQLDKAYAGARNKLVDGRGNLVRRAEQLRELGARTSKQLPAELLSEAGESLRLDDPRG
>NZ_PIYS01000009.1|WP_101193155.1|15167_18644_-|sensor-histidine-kinase
MILSPGLIAAVFLSYMALLFAIAFYGDRRAAPLSPRLRAWVYSLSLAVYCTSWTFFGAVGQASERLWSFVPIYLGPVLLMLLAPWVLQKMVRISKQENITSIADFIAARYGKSQGLAVLVTLVCLVGVLPYIALQLKGIVLGVNLLTGASAESSGVRAQDTALVVSLVLALFAILFGTRNLDVTEHHRGMVLAVAFESLVKLLAFLAVGVFVTWGMFDGFQPLLDQARKASHMQAFWADTLDWPSMLVQTGIALLAIICLPRQFHVTVVENTEPRDLRLARWVFPLYLVLAALFVVPIALAGQLSLPPGISADSFVISLPLAEARPELALLAFIGGASAATGMVIVACVALSTMLSNDIVLPALLRRQRSDRPFELFRHWLLTVRRVSILVILLLAYVCYRLFGSSASLATIGQVAFAAITQLAPAMLGALYWKQANRQGVLAGLLTGAALWFYTLVLPLVAGGLGWPLQRFPGLEWLANQPLGLPVDPLTLGVVLSLAGNWLVFAVVSLMSRTRVAEHWQAGRFVGQDSSVGSNRSLLAVRLADLLSLAERFVGSERAQQSFQRFAMRQGSAFNPGHNANSDWIAHTERLLAGVLGASSARVVVKAAIEGREMQVEDVVRIVGEASEVLQFNRALLQGAIENISQGISVVDQSLRLVAWNRRYIEIFEYPEGLVYIGRPIADIIRFNAQRGLLGNGDIEEHVNKRLHWMRQGTAHTSERLFPSGRVIELIGNPMPGGGFVMSFTDITEFREAERALKAANEGLEQRVSERTQELSQLNLALSEAKAHAEAANQSKSRFLAAVSHDLMQPLNAARLFSAALAHQQGLPREAETLVQHLDSALHSAEDLITDLLDISRLENGRITCDRQNIPLAQLFDALGAEFRALAQGQGVDFRVRGSRHSINSDPKLLRRILQNFLTNAFRYAKGQVLLGVRREGRQLRLEVWDRGPGIAADKQKEIFEEFKRLDSHQTRAEKGLGLGLAIADGLCRVLGHRLQVRSWPGKGSVFSVSVPLASQQTVTHSPPPSQHTSGQQLAGAPVLCVDNEDSILAGMHSLLSRWGCQVWTARNRLECEHLLDEGIRPQLALVDYHLDEGETGCELMAWLRGRLGSPLPGVVISADGRQELINSVHAAGLDYLAKPVKPAALRALISHHLRQRD
>NZ_PIYS01000009.1|WP_101193186.1|18858_19527_+|AzlC-family-ABC-transporter-permease
MLPLLLGTAPFGVIFGGLAIAAGLSPWQTLGMSLLVFAGSAQFIAVSLIGAGAGLAVVLLTTLVVNLRHALYSASLQPFVRHLPGRWRLALAFWLTDEAFAVVQQRYARADTSPCKHWYFLGAALAMYGNWQLCTALGIVFGQTLPNLAAWGLDFAMLATFIGIVVPMLRNTPQVAAALVAGALALACHSLPYQLGLLVAAAGGILSGLCLERLAASGEAKA
>NZ_PIYS01000009.1|WP_101193156.1|19523_19853_+|AzlD-domain-containing-protein
MNTWLLILGMLLITFTTRYSLFAWPHLQFPEGLRRALHYVPIAVLSAIVVPGMLLPDGQHWALRADNAYLLAGLASILVAAVTRHLLATIASGLLLFFVLRWAFGQLPV
>NZ_PIYS01000009.1|WP_101193157.1|19965_21840_+|MFS-transporter
MSHPSQFSLLRSRRFLPFFLTQLLGAFNDNIFKQALILGILFKLNAQADQALLINLCALLFILPFFLFSALGGQFGEKFAKDALIRAIKLGEVLIMLAGAVGVLLGNLPLMLLVLFLMGSQSALFGPVKYSILPQALREDELVGGNALVETGTFLAILGGTIGAGLLMASSDYAALVAGSVVGVAVLGYLASRFIPFAHASLPQLALDWNILRQSWQIMRMGLGQRPAVSRSLIGNSWFWFLGAVYLTQIPAFAKDWLHGDESVVTLILTLFSLGIGLGSMLCERLSGGKVEIGLVPFGSIGLSLFGILLWAGSGQLAPADSAYDWLSLLAQPGSLTLLGCVVGLGLFGGFYIVPLYALIQSRTAEQERARVVAANNILNALFMVASALLSILFLSVAGLSVPELFLVVSLMNVAVNCYIFKIVPEFSMRFLVWLLGHSMYRVEARGLQVIPDEGAAVVVCNHVSFVDALLLAGAVRRPMRFVMYYKIYNLPVLNFIFRTAGAVPIAARHEDERIYAQAFERISQYLQCGELVCIFPEGKLTSDGQINTFRGGIERILEENPVPVIPLALQGLWGSFFSRAPQRGLFRRLWSRIGLVAGQPLPASEASCARLQAEVQALRGERA
>NZ_PIYS01000009.1|WP_101193158.1|21854_22622_-|phosphonate-ABC-transporter,-permease-protein-PhnE
MKRLGNLALLVALGLGIWASFAYLGLQLGSLFSEQSLTQMSRYALRFLQPDLSSTHLQAIARGTLETLAMSALGTLLAALLGLLLALPAAGRCGGLAEALARLLLNALRAIPELVWAALMVLAAGLGPNAGTLALALHTAGVLGRLFAEALENTPAAPAEAIRLQGGGQLAAFCYGTLPNLWPQLLAYTLYRWENNIRMASVLGFVGAGGLGQMLYVSLSLFQEAQASTVILAMLALVLAVDALSSWSRQRWVRQ
>NZ_PIYS01000009.1|WP_101193159.1|22618_23446_-|ABC-transporter-permease
MLSPHPRDPAAMPRLLLSVLAIALLWPGVQLSELDLGVLLAADSQNEMGRFVAAFWPPAHQGEFLQLLAQATLQTLAIATAGMALALLLAIPAALLASRALSLSAASRGGQPSWLGQAVRWPVRGLLIFLRSVPEIVWALLFVRAVGLGPTAGVLAIAITYAGMLGKVYAEIFESVEQRPMHALLQAGSGRLSAFAYGILPNAAAELTSYTLYRWECAIRASVVMGFVGAGGLGQQLDLSMRMFAGGEVASMLLTFLLLVLLADALSRLLRGRLA
>NZ_PIYS01000009.1|WP_101193160.1|23439_24237_-|ATP-binding-cassette-domain-containing-protein
MSLRLSGAHLQHSHSVHALRGVDLTIARGERVAIIGPSGAGKSSLLNLLATALPPSAGQVEVLGRAPWRLSARQRQQLRTQIGLIHQAPPLPARQRVVTAVLAGKLGQWGLLRSLVSLLYPLDIPGARAALARLDLADKLFAQCQQLSGGQLQRVGIARVLYQAPQLLLADEPVSAMDPVLAGHTLSVLCQHAQREGITLVASLHAVELALAHFPRIIGVREGRIAFDCPAAEVDQPRLDALYANQQLLTPTPPSPAPSLQIPRC
>NZ_PIYS01000009.1|WP_101193161.1|24233_25085_-|putative-selenate-ABC-transporter-substrate-binding-protein
MLKRTLALASAMALSLSATLAQAADVLKVSAIPDEAPTELLRKFQPLGAYLEQQLGMPVEFTPVADYPAVVEALASDRIDLAWLGGFTFVQARLKTGNARPLVQRAEDARFTSKFITANPDVQSLADLKGKSFAFGSVSSTSGSLMPRYFMLQDGIKPESHFSRVGYSGAHDATAAWVQAGKVDGGVLNASVWDKLVANGTIDSNKVRVFATTPTYFDYNWTVRGTLDPALTAKIKAAFLALDPAIAEHKAILDLQAASRFIETAPENYQGIEEAARAADLLK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

10. NZ_PIYS01000014

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

155282 : 173614

uncultured_Caudovirales_phage(42.86%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_093986580.1\|155282_156539_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	4.8e-18	85.2
WP_093986581.1\|156600_156858_-	cold shock domain-containing protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.5e-14	56.1
WP_093986582.1\|157071_157434_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	5.3e-10	42.0
WP_101193395.1\|157500_159774_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.0e-167	43.7
WP_002553999.1\|159834_160053_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_093986653.1\|160154_160862_-	arginyltransferase	NA	NA	NA	NA
WP_101193396.1\|160929_161631_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_101193397.1\|161634_162585_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	6.4e-63	43.3
WP_093986654.1\|162762_165222_+	DNA translocase FtsK	G1D482	Mycobacterium_virus	2.5e-87	51.1
WP_101193398.1\|165241_165862_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_101193399.1\|165865_167188_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.1e-68	36.5
WP_101193400.1\|167184_167559_+	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_101193401.1\|167655_168933_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.8e-98	55.7
WP_101193402.1\|169051_170440_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_101193403.1\|170514_171492_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.4e-129	69.7
WP_093986592.1\|171488_171803_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	5.9e-34	68.7
WP_093986593.1\|171799_172102_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.3e-22	57.0
WP_101193404.1\|172098_172458_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	3.0e-29	57.5
WP_101193405.1\|172457_172850_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.9e-40	64.3
WP_101193406.1\|172945_173614_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	5.1e-91	80.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

11. NZ_PIYS01000025

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

12. NZ_PIYS01000007

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage