CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019448	Simonsiella muelleri ATCC 29453 chromosome, complete genome	3 crisprs	csa3,DEDDh,cas9,cas2,DinG,c2c9_V-U4	2	3	14	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019448_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019448_1

1168702-1168992

TypeII

Consensus_repeat	Method
ATTATAGCACTACGAGATGAGAGGGGGAACTACAACTG	PILER-CR
ATTATAGCACTACGAGATGAGAGGG	CRISPRCasFinder
ATTATAGCACTACGAGATGAGAGGGGG	CRT

4 spacers

cas2,cas9

The CRISPR arrays of NZ_CP019448_1

>merge|NZ_CP019448|1|1168702-1168992|PILER-CR,CRISPRCasFinder,CRT
ATTATAGCACTACGAGATGAGAGGGGGAACTACAACCGTGAACGTGATAGATGCGTGAACGTGATAATTATAGCACTACGAGATGAGAGGGGGAACTACAACTGAGTGATAGATACGTGAGCGCGTGAGTGAATTATAGCACTACGAGATGAGAGGGGGAACTACAACTGTTGGACGTAGCAAAAGCCAAAGGTTGGGATTATAGCACTACGAGATGAGAGGGGGGACGACAACAGGCTGCCCAGTGATTCAGGCAGCCTGAAAATTATAGCACTATGAGATGAGAGGGTG

>NZ_CP019448|1|1|1168702-1168937|PILER-CR
ATTATAGCACTACGAGATGAGAGGGGGAACTACAACCG	TGAACGTGATAGATGCGTGAACGTGATA
ATTATAGCACTACGAGATGAGAGGGGGAACTACAACTG	AGTGATAGATACGTGAGCGCGTGAGTGA
ATTATAGCACTACGAGATGAGAGGGGGAACTACAACTG	TTGGACGTAGCAAAAGCCAAAGGTTGGG
ATTATAGCACTACGAGATGAGAGGGGGGACGACAACAG

>NZ_CP019448|1|1|1168702-1168990|CRISPRCasFinder
ATTATAGCACTACGAGATGAGAGGG	GGAACTACAACCGTGAACGTGATAGATGCGTGAACGTGATA
ATTATAGCACTACGAGATGAGAGGG	GGAACTACAACTGAGTGATAGATACGTGAGCGCGTGAGTGA
ATTATAGCACTACGAGATGAGAGGG	GGAACTACAACTGTTGGACGTAGCAAAAGCCAAAGGTTGGG
ATTATAGCACTACGAGATGAGAGGG	GGGACGACAACAGGCTGCCCAGTGATTCAGGCAGCCTGAAA
ATTATAGCACTATGAGATGAGAGGG

>NZ_CP019448|1|1|1168702-1168992|CRT
ATTATAGCACTACGAGATGAGAGGGGG	AACTACAACCGTGAACGTGATAGATGCGTGAACGTGATA
ATTATAGCACTACGAGATGAGAGGGGG	AACTACAACTGAGTGATAGATACGTGAGCGCGTGAGTGA
ATTATAGCACTACGAGATGAGAGGGGG	AACTACAACTGTTGGACGTAGCAAAAGCCAAAGGTTGGG
ATTATAGCACTACGAGATGAGAGGGGG	GACGACAACAGGCTGCCCAGTGATTCAGGCAGCCTGAAA
ATTATAGCACTATGAGATGAGAGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019448.1\|WP_158666815.1\|1176826_1176967_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_040628968.1\|1168338_1168638_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP019448.1\|WP_002641955.1\|1161874_1162282_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_002641950.1\|1164922_1168114_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP019448.1\|WP_002641957.1\|1158993_1159503_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182734
NZ_CP019448.1\|WP_158666815.1\|1176517_1176658_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_002641956.1\|1159583_1160960_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP019448.1\|WP_104930329.1\|1173634_1173988_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_158666816.1\|1177135_1177633_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_158666815.1\|1176208_1176349_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_002641958.1\|1158134_1158911_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320690
NZ_CP019448.1\|WP_158666813.1\|1175275_1175422_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_104930330.1\|1174522_1174795_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_002641959.1\|1157435_1158005_+\|manganese-efflux-pump	unknown	unknown	gnl\|CDD\|183151
NZ_CP019448.1\|WP_104930326.1\|1163810_1164041_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_155999553.1\|1162313_1162544_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224576
NZ_CP019448.1\|WP_158666812.1\|1173397_1173562_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_040628970.1\|1162830_1163643_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_158666815.1\|1175899_1176040_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_158666814.1\|1175590_1175731_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP019448.1\|WP_002641958.1\|1158134_1158911_+\|M48-family-metallopeptidase	gnl\|CDD\|320690	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase. This subfamily contains peptidase M48C Oma1 (also called mitochondrial metalloendopeptidase OMA1) protease homologs that are mostly uncharacterized. Oma1 is part of the quality control system in the inner membrane of mitochondria, with its catalytic site facing the matrix space. It cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Oma1 can cleave the misfolded multi-pass membrane protein Oxa1, thus exerting a function similar to the ATP-dependent m-AAA protease for quality control of inner membrane proteins; it cleaves a misfolded polytopic membrane protein at multiple sites. It has been proposed that in the absence of m-AAA protease, proteolysis of Oxa1 is mediated by Oma1 in an ATP-independent manner. Oma1 is part of highly conserved mitochondrial metallopeptidases, with homologs present in higher eukaryotes, eubacteria and archaebacteria, all containing the zinc binding motif (HEXXH). It forms a high molecular mass complex in the inner membrane, possibly a homo-hexamer.	1.82691e-72
NZ_CP019448.1\|WP_155999553.1\|1162313_1162544_-\|hypothetical-protein	gnl\|CDD\|224576	COG1662, InsB, Transposase and inactivated derivatives, IS1 family [DNA replication, recombination, and repair].	2.57935e-05
NZ_CP019448.1\|WP_040628968.1\|1168338_1168638_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.56004e-43
NZ_CP019448.1\|WP_002641959.1\|1157435_1158005_+\|manganese-efflux-pump	gnl\|CDD\|183151	PRK11469, PRK11469, manganese efflux pump MntP.	1.22477e-51
NZ_CP019448.1\|WP_002641950.1\|1164922_1168114_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP019448.1\|WP_002641957.1\|1158993_1159503_+\|peptidylprolyl-isomerase	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	1.27717e-69
NZ_CP019448.1\|WP_002641956.1\|1159583_1160960_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	7.05257e-115

>NZ_CP019448.1|WP_040628968.1|1168338_1168638_+|CRISPR-associated-endonuclease-Cas2
MVFFDLPVTTKAKRQAANQFRHFLQQDGYEMLQLSVYSRIVRGRDMLQKHYTRLQAHLPSEGNVRCLEVTEKQFVSMKMLIGNPSPREKKVNSEQLLLF
>NZ_CP019448.1|WP_002641950.1|1164922_1168114_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MEKFHYVLGLDLGIASVGWAAIEIDKETETSIGLLDCGVRTFERAEVPKTGDSLAKARREARSTRRLIRRRSHRLLRLKRLLKREIFRQPETFKDLPINAWQLRVKGLDSRLNEYEWAAVLLHLVKHRGYLSQRKSEMSETDSKSEMGRLLAGVAENHQLLQQEQYRTPAELALKKFVKHFRNKGGDYAHTFNRLDLQAELHLLFQKQRELGNPFTSPELERQVDDLLMTQRSALQGDAILKMLGHCGFEPEQFKAAKNTFSAERFIWLTKLNNLRIQDQGKERALTADERTKLLDEPYKKSKLTYAQVRKLLSLPQTAIFKGLRYDLEHDKKAENSTLMEMKSYHNIRQTLEKSGLKTEWQSIATQPEILDAIGTAFSIYKTDEDISHELKTCRLPENVLNELLKNINFDGFIQLSLTALRKILPLMEQGYRYDEACTQIYGNHHSGSLQQESKQFLPHIPIDDVRNPVVFRTLTQARKVVNAIIRRYGSPARVHIEMARELGKSKSDRDRIEKQQQKNKKERENAVAKFKEDFPDFVGEPRGKDILKMRLYEQQHGKCLYSGHDIDINRLNEKGYVEIDHALPFSRTWDDSQNNKVLVLGSENQNKRNQTPDEYLDGANNSQRWLEFQARVQTCHFSYGKKQRIQLAKLDDETEKGFLERNLNDTRYIARFMCQFVQENLYLTGKGKRLVFASNGGMTATLRNLWGLRKVREDNDRHHALDAIVVACSTASMQQKITKAFQRHESIEYVDTETGEVKFRIPQPWDFFRQEVMIRVFSDQPCEDLVEKLSARPEALHDNVTPLFVSRAPNRKMSGQGHLETIKSAKRLSEENSMVKKPLTTLKLKDIPEIVGYPSREPQLYAALKTRLETHDDDPIKAFAKPFYKPNKNGELGALVRSVRVKGVQNTGVMVHDGKGIADNATMVRVDVYTKAGKNYLVPVYVWQVAQGILPNRAVTSGKSEADWDLIDESFEFKFSLSRGDLVEMISNKGRIFGYYNGLDRANGSIGIREHDLEKSKGKDGVHRVGVKTATAFNKYHVDPLGKEIHRCSSEPRPTLKIKSKK
>NZ_CP019448.1|WP_104930326.1|1163810_1164041_+|hypothetical-protein
MANLKLDLSQDYATQMLSFYLYGEEGSGKVIRPSQIADSKWIRTKDLTVDVDSVDFLEKTGLKNFNPYEFYVIRGY
>NZ_CP019448.1|WP_040628970.1|1162830_1163643_+|hypothetical-protein
MKKINKKFLICILFIIAFGFYYFRIFLSPLQILSISEIEKNKQGICLAENRKLSEDELLNRGMQSYFKYLQTAKISLDEANEVQIPKCPENCIITQLENYNLLDYLRLNKLNYKENHKGKRIIPQGVKINSFPINQFGNYINFRNKQNNLFSLYASQNRWDDFYPNDCCEVNTLDFYKKNGLSLENAPKYWRSIGKGNFYLTIKYLSINADTGKSIILDYETISLDNYGNINKKYFNEKNNNDDLKKLALQISIFLVFRRMELYSEREIR
>NZ_CP019448.1|WP_155999553.1|1162313_1162544_-|hypothetical-protein
MAFELKQRLKEQNITYDCIASDHWQSFDTVFADTNERWAGKQHTQAIEVNNCAIRHWIGFAYINACHWRKRQKNRI
>NZ_CP019448.1|WP_002641955.1|1161874_1162282_+|hypothetical-protein
MKNLIIKTLKFLDKDEVFRWVLLILTGIYVWVSWVKLDDIAEEKAKIASNIQEDCAYVVSASPQKHRWILSIGSRSSFKGYEVDSITKIPKTFPFFKKRGEFYTSLHHDDKTCHKVKYIRINWIIVRRTYIYDII
>NZ_CP019448.1|WP_002641956.1|1159583_1160960_+|FAD-binding-oxidoreductase
MNLNQIREKIQIILTENELPQDPTSFLLDQRKRYISENCLLVQPNSVESVQKVVRFCAENGVPITPQGGNTGLVGGSVAKSGILLNLSKLNKIRAINLADNTITVDAGCVLQNVQAAAQEAGRFFPLSLASEGSCQIGGNIACNAGGLNVLRYGTMRDLVVGLEVVLPNGELISHLQPLHKNTTGYELKHVFIGSEGTLGIITGATLKLFAPAQTTETAWVGVESIHDAVNLLTSIKNQFAERLCSFELMSRFALQLSSNFSKINQPVDSDWHLLLELTDSLKREDLGHLLAEYLYQNGYENSVLAQSEQERQNFWTLRENISASQRDLGVSIKHDIAMPIIQVADFLENCGSELQLEYPEMRIVVFGHLGDGSLHYNTFLPVKDNRAYEQEGAINQIVYRHILAQNGTIAAEHAIGSLKKHWLAQVRTADEILLMRAIKSQLDPNNLFNADKLLPSV
>NZ_CP019448.1|WP_002641957.1|1158993_1159503_+|peptidylprolyl-isomerase
MIKLHTNFGVISIELDHDNAPITAANFEQYVKDGFYDGVIFHRVIKGFMIQGGGMDSDMNEKDTRDSIQNEAHNGLKNEKYSIAMARTSDPHSASAQFFINTADNEFLNYRAKELHGRTVVQEWGYAVFGKVVDGFDVVDAIEGVKTKNHGYHADVPAETVVITKAEVV
>NZ_CP019448.1|WP_002641958.1|1158134_1158911_+|M48-family-metallopeptidase
MQKKYSVYALALMMSACSVVDSSSLNAQSAQQYTAVVQKAQSAKLVDTTSNTAKRVQTVFRRLLPHANAANQTGHPFDWQMTVIRSNEMNAWAMPGGKMAVYTGIVEQLNLTDDELAAVIGHEMTHALLEHSKKEANRTAGLQIGANLGSAILQATTGINGDLVNTGIGLAADLGVDKPFSRSAEKEADLGGLKLMAQAGYNPQAAIAVWQKMNAKNNNNNMLNKILSTHPTNNARIQELQKELPNVVPIYQQAIGKK
>NZ_CP019448.1|WP_002641959.1|1157435_1158005_+|manganese-efflux-pump
MSIFALILLAFSMSMDAFAAAISKGAAAKNVSTQEIIRAALIFGVVEGITPLVGWGAGQAAQSFIAEYDHWVAFILLLILGIRMIRESFSAKDENEIDNKNNKLGILILTAIATSIDSMIVGVGLAFLDVHIGWTALAIGSATTFMAAIGMGLGKMLGKKVGQRAELVGGLVLIAIGSSILLKHLGFIS
>NZ_CP019448.1|WP_158666812.1|1173397_1173562_+|hypothetical-protein
MPSIWKVTSLPVGTPDTLPETVMICELVSSRLMMPSCAMASKVKVACPTVVCTA
>NZ_CP019448.1|WP_104930329.1|1173634_1173988_+|hypothetical-protein
MVAVANSAPFTFTVNWLPATSPLPISLSPRYTFTTSLSRAPDTLPVTGTCVCDSAKFTVLSSPATLVTVTTGAGSVTTSYLPICEPVAELPAASVAMTSTRTWLLVFKSAPFTFTLN
>NZ_CP019448.1|WP_104930330.1|1174522_1174795_+|hypothetical-protein
MSFVVISTVNFGVLAAAKVAPSTSTLNASAVTLPLPISVPSSKTRTTSPVFAPDTLPEINTFSAASFSFKTSSLAIFVNEICGAANESNA
>NZ_CP019448.1|WP_158666813.1|1175275_1175422_+|hypothetical-protein
MTLLPSRAPDTLPETATSCVASVVLILLSSEMWTLLMVGVASVTTLYA
>NZ_CP019448.1|WP_158666814.1|1175590_1175731_+|hypothetical-protein
MSPLRAPDTLPETATSCVASVVLILLSSEMWTLLMVGVASVTTLYA
>NZ_CP019448.1|WP_158666815.1|1175899_1176040_+|hypothetical-protein
MSPSRAPDTLPETATSCVASVVLILLSSEMWTLLMVGVASVTTLYD
>NZ_CP019448.1|WP_158666815.1|1176208_1176349_+|hypothetical-protein
MSPSRAPDTLPETATSCVASVVLILLSSEMWTLLMVGVASVTTLYD
>NZ_CP019448.1|WP_158666815.1|1176517_1176658_+|hypothetical-protein
MSPSRAPDTLPETATSCVASVVLILLSSEMWTLLMVGVASVTTLYD
>NZ_CP019448.1|WP_158666815.1|1176826_1176967_+|hypothetical-protein
MSPSRAPDTLPETATSCVASVVLILLSSEMWTLLMVGVASVTTLYD
>NZ_CP019448.1|WP_158666816.1|1177135_1177633_+|hypothetical-protein
MSPSRAPDTLPETATSCVASASFMTLSLVILTLLILGLSRVGWAAAGASLPPLLLLLLPLLLLLPPPPLAAAVTPANATAPSAPIKILLDDVAKAVLEADWVVLVDEVLTAVVVLTSLANCAVVSGTAVTTLVGIRGMAAGALVRAKVASICIKFRLLVMGEKSP

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Crispr_ID: NZ_CP019448_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019448_2

1372393-1372574

Orphan

Consensus_repeat	Method
TGGTTTCCACAACGTGTTCAACGGTTTCTTTGATTTGTTGCTTGCTGTTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP019448_2

>merge|NZ_CP019448|2|1372393-1372574|PILER-CR
TGGTTTCCACAACGTGTTCAACGGTTTCTTTGATTTGTTGCTTGCTGTTTTCCAAATCGTGTTGGTGTTGTTCAACAGTGATTTCCACGGTTTCTTTGACGTTTTCTACGGTTTCTTGCGCCAATTCTTTGGTGGTTTCCACAACGTGTTCAACGGTTTCTTTGATTTGTTGCTTGCTGTTT

>NZ_CP019448|2|2|1372393-1372574|PILER-CR
TGGTTTCCACAACGTGTTCAACGGTTTCTTTGATTTGTTGCTTGCTGTTT	TCCAAATCGTGTTGGTGTTGTTCAACAGTGAT
TTCCACGGTTTCTTTGACGTTTTCTACGGTTTCTTGCGCCAATTCTTTGG	TGGTTTCCACAACGTGTTCAACGGTTTCTTTGA
TTTGTTGCTTGCTGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019448.1\|WP_002642550.1\|1364398_1365061_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_002642534.1\|1379766_1381779_+\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NZ_CP019448.1\|WP_002642546.1\|1368981_1369638_-\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|367140
NZ_CP019448.1\|WP_002642535.1\|1379047_1379614_+\|dCTP-deaminase	unknown	unknown	gnl\|CDD\|234753
NZ_CP019448.1\|WP_002642548.1\|1366415_1366862_-\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|273927
NZ_CP019448.1\|WP_002642538.1\|1376700_1377789_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|237587
NZ_CP019448.1\|WP_002642547.1\|1367376_1368915_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427
NZ_CP019448.1\|WP_002642544.1\|1370863_1372138_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NZ_CP019448.1\|WP_002642553.1\|1363325_1363520_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_002642545.1\|1369627_1370845_-\|SPOR-domain-containing-protein	unknown	unknown	gnl\|CDD\|335993
NZ_CP019448.1\|WP_002642533.1\|1381927_1383607_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|235923
NZ_CP019448.1\|WP_002642541.1\|1373650_1374013_+\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|214902
NZ_CP019448.1\|WP_002642536.1\|1378231_1379014_+\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|224315
NZ_CP019448.1\|WP_155999611.1\|1374038_1374209_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_002642549.1\|1365153_1366368_-\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NZ_CP019448.1\|WP_002642539.1\|1375469_1376153_+\|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	unknown	unknown	gnl\|CDD\|131266
NZ_CP019448.1\|WP_002642537.1\|1377791_1378184_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226989
NZ_CP019448.1\|WP_002642552.1\|1363559_1364159_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|182396
NZ_CP019448.1\|WP_002642551.1\|1364151_1364346_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_002642540.1\|1374229_1375477_+\|lipoprotein-releasing-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274034

Protein	Function_ID	Function_description	E-value
NZ_CP019448.1\|WP_002642534.1\|1379766_1381779_+\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	3.4606e-153
NZ_CP019448.1\|WP_002642546.1\|1368981_1369638_-\|CvpA-family-protein	gnl\|CDD\|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	1.85623e-22
NZ_CP019448.1\|WP_002642535.1\|1379047_1379614_+\|dCTP-deaminase	gnl\|CDD\|234753	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.	9.19153e-110
NZ_CP019448.1\|WP_002642548.1\|1366415_1366862_-\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	1.08168e-77
NZ_CP019448.1\|WP_002642544.1\|1370863_1372138_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	1.41209e-156
NZ_CP019448.1\|WP_002642547.1\|1367376_1368915_-\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0
NZ_CP019448.1\|WP_002642538.1\|1376700_1377789_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|237587	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP019448.1\|WP_002642545.1\|1369627_1370845_-\|SPOR-domain-containing-protein	gnl\|CDD\|335993	pfam05036, SPOR, Sporulation related domain. This 70 residue domain is composed of two 35 residue repeats found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This domain is involved in binding peptidoglycan. Two tandem repeats fold into a pseudo-2-fold symmetric single-domain structure containing numerous contacts between the repeats. FtsN is an essential cell division protein with a simple bitopic topology, a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localizes to the septum ring complex.	7.77383e-11
NZ_CP019448.1\|WP_002642533.1\|1381927_1383607_+\|AMP-binding-protein	gnl\|CDD\|235923	PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_CP019448.1\|WP_002642541.1\|1373650_1374013_+\|dihydroneopterin-aldolase	gnl\|CDD\|214902	smart00905, FolB, Dihydroneopterin aldolase. Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers.	7.47134e-33
NZ_CP019448.1\|WP_002642536.1\|1378231_1379014_+\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|224315	COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones].	2.72695e-58
NZ_CP019448.1\|WP_002642549.1\|1365153_1366368_-\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NZ_CP019448.1\|WP_002642539.1\|1375469_1376153_+\|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	gnl\|CDD\|131266	TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking].	1.19332e-117
NZ_CP019448.1\|WP_002642537.1\|1377791_1378184_+\|hypothetical-protein	gnl\|CDD\|226989	COG4642, COG4642, Uncharacterized protein conserved in bacteria [Function unknown].	6.17726e-14
NZ_CP019448.1\|WP_002642552.1\|1363559_1364159_-\|Fic-family-protein	gnl\|CDD\|182396	PRK10347, PRK10347, putative adenosine monophosphate-protein transferase Fic.	7.15234e-24
NZ_CP019448.1\|WP_002642540.1\|1374229_1375477_+\|lipoprotein-releasing-ABC-transporter-permease-subunit	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	3.33832e-164

>NZ_CP019448.1|WP_002642544.1|1370863_1372138_-|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase
MQQRNLTQWLTHLETAHSNGLIDMGLTRVAHVKHAMQLQPTCPVIIVGGTNGKGSTCAFLSQIYAQAGYKVGTLTSPHLLKFNERITINTHPVSDEQIVAAFERIELARDKISLTYFEFNTLAAVDIFQREHVDVMILEVGLGGRLDAVNIFDADCAIVTSVDLDHQQFLGDTIEQVAYEKAGIFRSAKPAICGQNPPPQNLVNHANEIGAELILFKKDFFFSKLENQQWSFHFSGSLKTRNRNALPIPALRGGYQLNNASCALAAIECLHERLPVDLGAIKRGLLMAENIGRFQVLPGRPICVLDVGHNPHAARALRQSLCSLPFAQHRIAVFSMLADKDIDGVLATVKDQFDEWYIAPLHLPRGMNLTDLQTKLQQHQIDHVKSFENIQAACTAALSAATENDRIVVFGSFHTVAEAMAVCK
>NZ_CP019448.1|WP_002642545.1|1369627_1370845_-|SPOR-domain-containing-protein
MAQRHQRQKSSRQHSELNAYIQSDKQPENTTQTDESDVEILEEVHYVIEEEYEQLQRRNRRRLVGAGALVLVAGGLFAAATTSNMPAPKLVTTDQNPYVKTEILRPDNGASAVANYDLSANAEEMSDDTPLIQTQLPKKSATTAALDTNKDDKAVTLTASEKAAQDARLQREKAQRIALRRKQEAERQAQLAQNNSSANNNATATKAAPKATNPTNNNVAVSTAKSTAPAAADQAEAKRKAREDEQRQRKAQALASKAESERAAKEIAAAEKIHQAQLAADKARVAERSKILGNNNTATKPETNNNTSSDKIQQEKQRAQRIADERTKANKQIAIQAGSFADKAQAQKMQQQLKGMNYSAGIEEVKTEKGTVYRVKTGKFANKDEADNALKNMKDKGVKGIIVGQ
>NZ_CP019448.1|WP_002642546.1|1368981_1369638_-|CvpA-family-protein
MDNNITISAFTLFDVLALCSVIACIASAAMRGVMAEVLAFGGWLLSLTVARSLCNIIAEKAFSNLQPHEMAVVISFVLIFVSMRILLHFLHYCLDYFIKIANLSRLNRVFGGLIGLLKGLLIVSLTVLVCSFTTLPESESWQIAKTSKFFERMAKLLAPTLPDFLREQVIFPPRIGDVDESITNENSKNDNHSAPNKKKNKRNLPEPTSIEPTELRYY
>NZ_CP019448.1|WP_002642547.1|1367376_1368915_-|amidophosphoribosyltransferase
MCGVFGMIAHEPVNQMLYDGLQMLQHRGQDAAGIVTTQGNRFHMHKGKGMVREVFRTRNMRELHGNAGIAHVRYPTAGNAGSSAEAQPFYVSSPFGIVLAHNGNLTNTAELYQEVYAQYLRHVNTQSDSEVLLNVFAHELRVAVSGSPTPLNLSVDDIFQAVSQVQAKVRGAYAIVALIAGYGLVAFRDPNGIRPLVLGKRVENDGKTSYAVSSENIAFSSLDFKLERDVGAGEAIFITLDGQLFSKQCTKKHQLSPCLFEYVYFARPDSVIDGVSVYQARADMGITLAKKVKREIDVNEIDVVMPIPDTSRPSAMELARYLGKPYREGLIKNRYIGRTFIMPGQATRKKSVRQKLNPIPSEFAGKNVLLVDDSIVRGTTSREIVDMVRASGAKKVFFASAAPEVRFPNVYGIDMPTREELIAHQRSAVEIAHEINADVCVFQDLHDLEQAIRHLNPEIDGFDSSCFSGCYVTGDVNEAYLNELSASKHSPKQNLPMPTLIDYSVSVEDDDN
>NZ_CP019448.1|WP_002642548.1|1366415_1366862_-|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MRLTTKGRFAVTAMIDLAMNAQDHAVKLNAISERQHISLSYLEQLFSKLRRAGLVESIRGPGGGYILGKAADQINIAQIIAAAEDCLDATLCSGKANCQSGSPCLTHNLWANLNHTINSYLSSITLASLLEQPPPDTNSQVVKLTYIH
>NZ_CP019448.1|WP_002642549.1|1365153_1366368_-|IscS-subfamily-cysteine-desulfurase
MTIKTPIYLDYAATTPVDKRVAEKMIPYLTELFGNPASSSHSFGWVAEEAVETARKNIADLINADSKEIVFTSGATESNNLAIKGAAHFYQSKGKHLITVKTEHKAVLDTMRELERQGFEVTYLGVQENGLIDLEELKAAIRPDTILISVMWVNNEIGVIQNIPEIGKICREHKIIFHVDAAQACGKTPIDVEAANVDLLSMSAHKIYGPKGIGALYVRRKPRVRLEAQMHGGGHERGFRSGTLPTHQIVGMGEAFRLAKLELEQDTAHALKLRQIFLDGIKDIEEVYINGDLENRVATNLNVSFNFVEGESLIMAVKELAVSSGSACTSASLEPSYVLRALGRNDELAHSSLRITFGRMTTEDEVKFAAELIKSQIGKLREMSPLWEMFKDGVDLSTVEWAEH
>NZ_CP019448.1|WP_002642550.1|1364398_1365061_-|hypothetical-protein
MNKFLYKNEGSIDEIFLNALNFAYSFNQPIHLVFPKKGQFESTNIGKLLDNLTPNLSKKLSKGGKVNNLDFLLPNQINDQTSQGIVLAVYCTLRDMNKITSDSHPDSNIIYISWNMEEANNWENIWKNNGLEIKHGTPNNQEIVLNPKVEEVLRRLTNVVNLTTGLAHPSDKKSAINEFKKLKQLGIKENPEYIGNWALANGWNARHIDDLKKLATQYLL
>NZ_CP019448.1|WP_002642551.1|1364151_1364346_-|hypothetical-protein
MPPHLLEQRCQTLLEAHASNLIEHMDMGNDFLNELLELAKQNISNQEFERLAMAKLLSPYQQNV
>NZ_CP019448.1|WP_002642552.1|1363559_1364159_-|Fic-family-protein
MYNARLAHEQTVYDRLIIAGTPYFKNKMNLQGVELETFEARLVSIKTITRPTLTTFRLPEIQLLHKHLFSELYEWAGELRQYTTGRGEIPFCRPEFIVSFYGDVWRKLQNEQFLRGLNREDFAQRSAYYCSEFNAVHPFIEGNGRITRLLLQDLAATNGYRISMTALESDKGAWYAAMKAAFEAADTRLLAKLILSAME
>NZ_CP019448.1|WP_002642553.1|1363325_1363520_-|hypothetical-protein
MQNKFTLTQAQNRFLAKKNIVALIHSISRLENVNTTFPQTQTIVGGALNNFSFTETNYVGFQAA
>NZ_CP019448.1|WP_002642541.1|1373650_1374013_+|dihydroneopterin-aldolase
MDKIFLRGMHLETLIGVYEWERQNRQSLVFNLEIGLKDTFKNNDEISETVHYGVVHERLRQHLHEQQFLLLESLANDVAQFLFQTFVEIAWIHLQIIKPGILPNVQEVGVEIERYANAQE
>NZ_CP019448.1|WP_155999611.1|1374038_1374209_-|hypothetical-protein
MKSLGLYQSFAFSGCLYSTRQFFCILGCMPVARHISGSLKIMVILKNQAIIFAIYD
>NZ_CP019448.1|WP_002642540.1|1374229_1375477_+|lipoprotein-releasing-ABC-transporter-permease-subunit
MGLETWIGLRYLRAKKRSGFMSFISMISMVGITLGVVVLILVLSVVNGFQKEIRGQLLNIAPHAEIGYIQTEENDTWQNLQKLVVDKKGVISTAPYVAGQALLASSGEVRGAQIRGILPDMETKVVDYGNKMVSGSFNDLKDDEFGIILGSGLAESIGAEKGGKITIITPEGNVTPAGVVPRLKQFNVVGIVKTGVDEADSSLAITHLADAQKLYRLGNEGVALRLRLADPQNAPAFMSEIVPKDLLDKIWVRNWTDNNRSYFNAVEMEKRLLTLLLTCIIVVAVFNLVSSLVMAVTEKQSDIAILRTLGMSPRGVMKIFIVQGMVAGILGTFFGVIFGLLLAWKIGTIVSFVEQIFGVHFVASQVYFINYLPSDIQAADVIGVAVISLILSFLATIYPSLSAAKTQPAEALRYE
>NZ_CP019448.1|WP_002642539.1|1375469_1376153_+|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD
MNNQPIISCQNVGKIYEDGTLHVEVLQNLTFDVNAGESVSIIGASGSGKSTLLHILGGLDKPTSGSVQLMGRHLGSLNQTQLGHLRNQYLGFVYQFHHLLAEFSALENVMMPLLIGKMSRNEAEAQAAAMLERVGLKQRMLHRPTELSGGERQRAAIARALVKRPTCILADEPTGNLDRKNALNILDMMLELKNELQTALVVVTHDDELATRFERVLTMTEHGLQPY
>NZ_CP019448.1|WP_002642538.1|1376700_1377789_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MSIFPIPEILADIKAGKMVIITDAEDRENEGDIVMAAQFVTPEAINFMIKYARGLVCLPMEDKLIDRLGLPMMTQKNGAQYGTNFTVSIEAAQGISTGISAADRAHTIQTAVSQNVQPEDIVQPGHIFPLRAQKGGVLVRAGHTEAAVDLAKMAGLSGAGVICEVLKDDGTMARMPDLVAFAEEHGLKIGTIADLIEYRSRNESLLEEMGDTTVHTPWGEFQQHVYVDKLNGDTHLALVKGQPENASETLVRVHEPFSAMDFIQFDPNHSWDLPAALMRIQAAEAGVIILLHRTEDGSALLERTLPKNSFQIKKWDRKTYGIGAQILAGLKVSKMRVLGKPSSMNGLTGFGLEVVGFEEQAA
>NZ_CP019448.1|WP_002642537.1|1377791_1378184_+|hypothetical-protein
MKKYLFLLINFYIASAWAQQLNHQGCAYQGDVVQNKPHGKGVLTCPDGRIYTGDFVRGEFEGQGQYIVPNQHGILITPFGMNSDKLKNMVLVGHFSRGMAHGKFKVYQDGNYLFNFTFHQGIARDMKLAK
>NZ_CP019448.1|WP_002642536.1|1378231_1379014_+|ADP-ribosylglycohydrolase-family-protein
MLGVTIGDIVGSRFEFANNRNTKFDLFDKSSDFTDDTVCSVAVAEWVLSGCGDDLVEIMRMWGNRYPNPVGAYGFRFGCWLDDDNPEPYGSWGNGSAMRVSAVGWAFRTLEETLEYAKKSAEITHNHPEGIKGAQAVAAAIFWARMGKDKAFIREQITEQFGYDLNMTCDEIRPHYQFDESCQGTVPQAIVAFLESVDFEHAIRLAVSLGGDSDTMAAITGSVAEAFYGIPQDLREQALAILPRDMAELLLRFELSFQAA
>NZ_CP019448.1|WP_002642535.1|1379047_1379614_+|dCTP-deaminase
MSIKSDKWIRQMVERYSMIEPFEPNQVKEVNGQKIISYGTSSYGYDIRCAHEFKIFTNINSTIVDPKNFDPKNFVTVEDDCCIIPPNSFALARTVEYFRIPRNVLTVCLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGVAQVLFFESDEVCETSYKDRNGKYMGQTGVTLPKA
>NZ_CP019448.1|WP_002642534.1|1379766_1381779_+|apolipoprotein-N-acyltransferase
MAIPTLEHFLRKPFRYYLVLTSLALATPYAFAPYYYHFLMPFLFAGLIILTELRPNSRISTAYWFGLVAYTSQFWWIHTALHTVSGLPNIYAIPLTFLLPAFLALFPAIAFWLYEKHHLPRPLALGVMLPLLWTITEFGRERVFTGFGWGALGYSQISEYSPLAAFAPIGGIHLVTLATAALSCWLVLVVRNRFWWQRVIFVLAIAGLTYQAQILRTISYTYQQPKEVRVALLQGNIPQHLKFDDEQLLPTYRRYFDLVSKTKAEIVVLPETAFPQYLQHIDKKIIDRFAEKAKENGSALAVGIPAFTEDNKGQLNAMINLANFNPMQPEKLQVYAKNHLVPFGEFKPIPQLTEPLYKQMNMPLSDFKRGGIGQEPFDMAGEKVAMNICYEDGFGDELIESAKKSTLLANASNMAWYGNSNAMWQQLQQSQTRALEMGRYLIRAQNNGASAIIAPNGKVVEYTKPNTTAILEGKVHGMTGETPYMRLGSSWYLFYAMLAVAGVLMSYRPRTKLTPILPTINPNNQSIDKNTFGKSNRQPEKNAPKNESPIDPLTQDKIATHQKSKDDKIEQPVEKPIETIPIPMAQPEMVQRKSVNSFVVDPEKVQQAQASAVMPDSNKIIFTAPDTLDASKQMWRPIAPPHNAEDDIVRQSENKRQNIKPKRKKNKKRK
>NZ_CP019448.1|WP_002642533.1|1381927_1383607_+|AMP-binding-protein
MEKIWLKSYQNGVAAEIDTTRYSSIVDMINQSVQQYSHQIAFSNTVAPFSNHLTYQEVGKLSDQFASFLQNTLKLPKGERVAIMMPNILQYPIATFGILKAGLVVVNTNPLYTPRELEHQLNDSGASTIVVLENFANTLELVLPNLEKKNVNVVVASIGDLFGMFSGSLMNFVVRNVKKAVPNYQISHAIRFKDALAQGAKQSLSPIALQQDDLAFLQYTGGTTGVAKGAMLTHGNICANALQAGAWISNQLIFGKEVVIAALPLYHIFALTVNLLLFFHAGGHSILITNPRDLDGFIQEMKKYPITVFIGLNTLFNGLLNKSAFKDIDFSTWKLTLGGGTATQEAIAQKWQQVTGLPIVEAYGLTEASPGVCVNPLNIKKNIGGVGLPLPSTEVQLRDGKGGLVAIGEVGELWIRGPQVMAGYWNRPDETAKVMDAEGWLETGDIASMDEKGWLKIVDRKKDLIIVSGFNVYPNEIEDVVAHHPKVQEVACVGIKSDKTGEALKLFVVKKDASLTKEELIEYCRTQLTAYKVPREIEFRDELPKSNVGKILRRELREK

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Crispr_ID: NZ_CP019448_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019448_3

2434599-2434789

Orphan

Consensus_repeat	Method
GCGGCTTCTTGTTCAGCTTTTAATTTTTCTGCTTGAGCTTTAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019448_3

>merge|NZ_CP019448|3|2434599-2434789|CRISPRCasFinder
GCGGCTTCTTGTTCAGCTTTTAATTTTTCTGCTTGAGCTTTAGCTTCCTGTTCGGCTTTAGCTTTAGCGGCAGCGGCTTCTTGTTCAGCTTTTAATTTTTCTGCTTGAGCTTTAGCTTCCTGTTCGGCTTTAGCTTTAGCGGCGGCGGCTTCTTGTTCAGCTTTTAATTTTTCTGCTTGAGCTTTGGCTTC

>NZ_CP019448|3|2|2434599-2434789|CRISPRCasFinder
GCGGCTTCTTGTTCAGCTTTTAATTTTTCTGCTTGAGCTTTAGCTTC	CTGTTCGGCTTTAGCTTTAGCGGCAGCGGCTTCTTGTTCAGCTTTTAATTTTTCTGCTTGAGCTTTAGCTTCCTGTTCGGCTTTAGCTTTAGCGGCG
GCGGCTTCTTGTTCAGCTTTTAATTTTTCTGCTTGAGCTTTGGCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019448.1\|WP_002642783.1\|2430518_2432411_+\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|214935
NZ_CP019448.1\|WP_040629371.1\|2427026_2427902_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|379226
NZ_CP019448.1\|WP_002642781.1\|2429299_2429575_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_002642789.1\|2438173_2441326_-\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|234580
NZ_CP019448.1\|WP_002642778.1\|2427966_2428389_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_002642792.1\|2443355_2443871_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NZ_CP019448.1\|WP_002642786.1\|2436161_2436848_+\|Bax-inhibitor-1-family-protein	unknown	unknown	gnl\|CDD\|198415
NZ_CP019448.1\|WP_002642784.1\|2432672_2434091_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366488
NZ_CP019448.1\|WP_155999631.1\|2445297_2445492_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019448.1\|WP_002642787.1\|2437121_2437553_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP019448.1\|WP_002642772.1\|2422521_2423172_+\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_CP019448.1\|WP_002642775.1\|2423900_2425055_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225406
NZ_CP019448.1\|WP_002642791.1\|2441932_2443204_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224566
NZ_CP019448.1\|WP_002642793.1\|2443936_2445322_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_CP019448.1\|WP_002642773.1\|2423339_2423660_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371831
NZ_CP019448.1\|WP_002642790.1\|2441655_2441859_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235917
NZ_CP019448.1\|WP_002642776.1\|2425423_2426773_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP019448.1\|WP_104930460.1\|2429788_2430430_+\|peptidase-C39	unknown	unknown	gnl\|CDD\|225810
NZ_CP019448.1\|WP_002642794.1\|2445488_2447375_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_CP019448.1\|WP_002642788.1\|2437568_2437961_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888

Protein	Function_ID	Function_description	E-value
NZ_CP019448.1\|WP_002642783.1\|2430518_2432411_+\|RNB-domain-containing-ribonuclease	gnl\|CDD\|214935	smart00955, RNB, This domain is the catalytic domain of ribonuclease II.	9.5746e-47
NZ_CP019448.1\|WP_040629371.1\|2427026_2427902_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	0.00221701
NZ_CP019448.1\|WP_002642789.1\|2438173_2441326_-\|lipid-A-disaccharide-synthase	gnl\|CDD\|234580	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.	2.36365e-163
NZ_CP019448.1\|WP_002642792.1\|2443355_2443871_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	4.01888e-86
NZ_CP019448.1\|WP_002642786.1\|2436161_2436848_+\|Bax-inhibitor-1-family-protein	gnl\|CDD\|198415	cd10433, YccA_like, YccA-like proteins. A prokaryotic member of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	1.12443e-56
NZ_CP019448.1\|WP_002642784.1\|2432672_2434091_+\|hypothetical-protein	gnl\|CDD\|366488	pfam01145, Band_7, SPFH domain / Band 7 family. This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals.	6.12985e-13
NZ_CP019448.1\|WP_002642787.1\|2437121_2437553_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	1.49497e-103
NZ_CP019448.1\|WP_002642772.1\|2422521_2423172_+\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	4.04618e-57
NZ_CP019448.1\|WP_002642775.1\|2423900_2425055_-\|cupin-domain-containing-protein	gnl\|CDD\|225406	COG2850, COG2850, Uncharacterized conserved protein [Function unknown].	2.04549e-54
NZ_CP019448.1\|WP_002642791.1\|2441932_2443204_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|224566	COG1652, XkdP, Uncharacterized protein containing LysM domain [Function unknown].	3.77352e-09
NZ_CP019448.1\|WP_002642793.1\|2443936_2445322_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_CP019448.1\|WP_002642773.1\|2423339_2423660_-\|hypothetical-protein	gnl\|CDD\|371831	pfam11981, DUF3482, Domain of unknown function (DUF3482). This presumed domain is functionally uncharacterized. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with pfam01926. The central region of these proteins contains a hydrophobic region that is similar to pfam05433.	0.000420212
NZ_CP019448.1\|WP_002642790.1\|2441655_2441859_-\|hypothetical-protein	gnl\|CDD\|235917	PRK07046, PRK07046, aminotransferase; Validated.	0.0074308
NZ_CP019448.1\|WP_002642776.1\|2425423_2426773_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	4.59491e-154
NZ_CP019448.1\|WP_104930460.1\|2429788_2430430_+\|peptidase-C39	gnl\|CDD\|225810	COG3271, COG3271, Predicted double-glycine peptidase [General function prediction only].	1.73734e-65
NZ_CP019448.1\|WP_002642794.1\|2445488_2447375_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_CP019448.1\|WP_002642788.1\|2437568_2437961_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	2.14999e-78

>NZ_CP019448.1|WP_002642784.1|2432672_2434091_+|hypothetical-protein
MTGFVVIGMIVLIALLMIGLVLALLYRRVVKTNEVHIVQTNRDTKSFGKDTNNGNVYYAFPSWIPKLGVSTIVLPMSVFDVRINDYEAYDLERLPFKVDLTAFFRISESNLAAQRVSNFEDLQAQLEAIIQGSVRSILSSKNLNDILQMRSELGQDFTDAVREQLRNWGVEPVKAIELMDIRDSGDSKVIHNIMAIKQSDIERQSRTEVAKNQKEAQLAEIEAQKEADIKRQEAEQAVGMKTVENHREVALQEQKAQQQIESEKKITAEQEMAVKRVTSTREAEIAKDVAIVNAEKDQREREIKAMADKNVMEVNAEAERNRQILVAEGQKEQAFLAAAANLETKDKEAQGIAKIGSAEAEARKLLEISLVSGQIQLAQEIGENEGYQRYLIEIRQVEANEKIGIEQAKALSAADLKLIVNDGGSVVGGMDKLSKLLSSQGGANLGSMLESLGQFENGQKLIEKFTRPNDTE
>NZ_CP019448.1|WP_002642783.1|2430518_2432411_+|RNB-domain-containing-ribonuclease
MPNIFYEDGGQFKVASIIQKNDSTYQANTQHGKRVKIKINNVFIEFDGSMDDFLQSVQVQANDIDTELLWECVGTDEFDFQAAAKEYFGSQPSKSQLAATLMALYAAPMYFHKKNKGVFKAAPENVLKQALDAIERKARQEAQVQKWAEQLVSGSLPDEIATELPKILHAPDKQSLAYKAFYQAMDTLKMSAYELAKHTGGITSMPQYLLQRFEVKYFPRGTVLPDVVMSMQPENLSVANVQAFSIDDVSTTEVDDALSVQDLGGGVKRVGIHIAAPSLAIEPNSEIEKIILQRLSTVYFPANKITMLPKNWISAFSLDEGKIVPAFSIYFDVSSDWQLSEPISKIELVPIETNLRIQHIEPFFNSETGVGSADNLQFKHHADCLYLLELSYELQKKRDRLEDPTLPKKYDYGIDFDADGKVIITRRERGSPIDTLVSEMMILANTSWAKMLHDNNLAGLFRVQPSGRVRMSTHSEPHIGMNVAHYGWFTSPLRRASDYINQKQLQSVLQNDVAPRFDNTESDLFVALGNFEAAYSAYRAFQDMMESYWAMVWLKQENIREINAVVLKEELVRLEGLPLTARATGIPLEIAPKSTVKLAINEIDPEQQFIALKYLTVIPDDVSKSSLLDE
>NZ_CP019448.1|WP_104930460.1|2429788_2430430_+|peptidase-C39
MKQYLFIFIIFLSAFIHAQPLYIENPIVHQTIRVKSWKEKRDFGIVKQDLDFSCGAASVATLLNNFYGQSLTEETILNKMDKTQMRASFEDMQRIMPELGFQAKGYALPFEQLMQLKIPVIVYLKYRKNDHFSVLRGINEHTILLADPSLGHVSMSKSQFLDAWKTRDGDMEGKILAIIPKKLDISENSIFFNKKPIRQTHFAVKQLYIWQKR
>NZ_CP019448.1|WP_002642781.1|2429299_2429575_+|hypothetical-protein
MKTKIATVITIAMLSAPVMAQQNLNSLDSQVFANQNIKAVEIFLGLIIIPIDFVIYLIIKKYFPKNGLMIFIQTFTLSLINFLLLKYILKF
>NZ_CP019448.1|WP_002642778.1|2427966_2428389_+|hypothetical-protein
MKTKIATVIAMAMLSAPVMAQQNLNSLDSQVFANQNIKAVELSQTEMKETQGEWVANAIGGVMGGVGGHFGYMAGAALAGSYNFNGHMAAIGTGAAVGVLSPVTGASTLVHGMRGAALAGVIGGINGYAGNTGKNHTFRR
>NZ_CP019448.1|WP_040629371.1|2427026_2427902_+|outer-membrane-beta-barrel-protein
MKNKFVNSVSWVTCTSLAHADLPLSLEELLTDKGKLKLESSISYVNTERSQMQFANPIYVQTSATNFVAVPTAINETDSNSDIVVGTVGLRYGLTDKTDIYGNTNYLWRSDRQFNDSGSLKKRNNNLSDFSLGVSHTFMQDGKNPALIGFLETLVYEKSQDKKSFGKSWVVGATTYKAIDPVVLSLTATYRHNLKKNIDGNSYKSGNYFMLNPSISFAANDKISLTGGVQWLNAQADTQNGKKLSARNTSTYAHAGIGYGITKDTALNASVRWKASGQSTSELKLGLTYNF
>NZ_CP019448.1|WP_002642776.1|2425423_2426773_-|DEAD/DEAH-box-helicase
MSQFSQLGLGQEITSALAEQGYETPTPIQATAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYANASTSPAMHPVRMLVLTPTRELADQIDQNTQNYIKNLPLRHTVLFGGVNMDKQTTDLRTGCEIVVATVGRLLDHIKQKNINLNKVEIVVLDEADRMLDMGFIDDIRQIMQMLPRPRQTLLFSATFAPAIRKLAQDFMNSPETVEVAAQNATNANVEQHVIAVDAYRKRELLERLIVDLQMPQVIVFCKTKQSADQVARDLVRRGLSANAIHGDKSQQTRLDVLSQFKSGELRVLVATDVAARGLDIAELPFVINYELPTQAEDYVHRIGRTGRAGADGVAISMMDDNEQKMYFSINELIGQELPISKIEGFEPRWEMGDEPTSGSLKSEKTISKTPNRVERKFAKTKAEAITYPKIEGRSTRRRGLERRTCALLQRNFGAI
>NZ_CP019448.1|WP_002642775.1|2423900_2425055_-|cupin-domain-containing-protein
MYLNLNITAEHFRQEFLYKQPKLFKGAAKDVPIDWQYINELYQRANPVDELFRLRKGEIVPVSAYVESFNDIGRTRYRFNKAAVYEHLRKGATIVYNRINNEPLVDAIAKHIAQFVQAQTVVSGYLAFGSDASFKNHWDTRDVFAVQLMGKKHWSLYAPNFEMPLYMQQSKDVNVPEPQHPDMEVVLEAGDILYIPRGWWHSPVPMNCETFHLAIGTFAPTGYQYMEWLMKKVPSIVELRHNLNNWQSDQNRIQVAAQNIAKLLVNRENYETFKQEFLGDHRADTAFNMQIFGNPHNDRLPENGTIKLNSLDNRTITQGYVIANGIKTNLDNDSQTILQWIADQHYVELSQLNEFCQNQNINSEKMNKLIFELAIVGVLEFILP
>NZ_CP019448.1|WP_002642773.1|2423339_2423660_-|hypothetical-protein
MIELSINDLNLVSGAGCIATTLSGMANGGQSGAILSGAVGLGVSAFTAGLSAPATVTFGGIVGGTTGVVGGGIATGYECYQESKQKDQSGNDYGNTTNKDGNAYGG
>NZ_CP019448.1|WP_002642772.1|2422521_2423172_+|trimeric-intracellular-cation-channel-family-protein
MMDISQTLPTSSIIYALDMVGVAACTAAATMLAKRLQFDIFGAFFVSFLGSVGGGTLRDLLLNRHPIFWLHDLNYLYFIMVLSTIIQIFYHFLDKLDKSLRWFDALGLAAFTVIGVQAALSRGMSAPIVMLMGAVTAIIGGVLRDIVCRQIPLVLQKEIYITASLLGSVYYLLLLHTDVSEWVRSVTTLLLIFVIRMLAVYRGWNLPDLTWKPKKR
>NZ_CP019448.1|WP_002642786.1|2436161_2436848_+|Bax-inhibitor-1-family-protein
MDNQVTNQYGHSLPSTNLVLQKTYRLLAWSFLPCILGAVAGMVFNPMAVLGGGWIGIVAVFAFFYGMIFVIEKNRYSNTGVILLMIFTFGMGILLSGLLRVAGMYSNGAQLVAVAAAMTAGIFFTVSALARNPKFAINTNKLGSFLMAGVVVVMIAVIANLFLNLPMLSLTISGVFVFLSSLMIMWKTRVIVEGGEDSYISAALSIFIDIYNLFTSLLRLLLAFTGED
>NZ_CP019448.1|WP_002642787.1|2437121_2437553_+|50S-ribosomal-protein-L13
MKTFSAKPHEVQREWFVIDAEDKVLGRVAAEVASRLRGKHKPEYTPHVDTGDYIIVINADKLRVTGNKFEGKTYYRHSGFPGGIYERSFREMQESFPGRALETAVKGMLPKGPLGYAMIKKLKVYAGAEHQHAAQQPKVLELK
>NZ_CP019448.1|WP_002642788.1|2437568_2437961_+|30S-ribosomal-protein-S9
MNGKYYYGTGRRKSSVARVFLQKGTGQIIVNGRPVDEFFSRETSRMVVRQPLALTENLESFDIKVNVVGGGETGQSGAVRHGITRALIDYDVALKPALSQAGFVTRDAREVERKKAGLRKARRAKQFSKR
>NZ_CP019448.1|WP_002642789.1|2438173_2441326_-|lipid-A-disaccharide-synthase
MNKEIIIALCAGEASGDLLGAHLIDALKQQYPNTRFVGIGGPRMKAAGLISLYEQDALAVRGYTEILGNLFEILRIRRGLVEDLRKISPHVFVGIDSPDFNLTVAAKLKAAGIPTLHYVSPSVWAWKPERVHKIVRQVNQVLCLFPMEPKLYRDAGGKAEYVGHPLAQMLPLENSREAVRERLKLNLTAPVFTLLPGSRVSEVEYMAPVFLRAAALIVKALPEAVFLMPYPSAGVRECLQEYLQQEEFRYLPIRLQAAKTELACIAADVVLVTSGTASLEVALCKRPMVISYRISSLTYALVKRKIKIQYVGLPNILLGREVVPELLQKDATPEKLANAVLDWYYHPARAAELEMHFLQLHQYLRRNTDELAAYAVLTEAGLHLPKPEVIGEEFDDVASQPSITESELPKSSEQTPQTDTTQTNESVATPENLTNNPIIAPPSALVGMKTDAKLVKSTDTPVSLVSPESKPIASEPTPPQTITESSTESFRQPEKNAEQIIETNQPLPNESDNMNTNAPNSSAPRKSKGGLFGWLCSLFGKKQRPEFEAMQNDALANASDSTIVAVSRAEAPDDAEPQQPTQTAAPTTSSENTQPANAAVCHVIEEEELHVAPVQMVLPKSTILTNNQKPNIFAKYIPDETQSAAATPVVEKTTPTIQSTENKNISVSINKRPVAPAIAPEPPKAPSAPQTSSLAKYLTQASMAGLPADKLTKPAQPVAETKPEISVEIESVQIANQPVAETKPEISVEIESVQITNQPIVETKPEISVEIESVQITNQPIVETKPEISIEVESVQITNQPIAETKPQISIESVQIANQPVAETKPEISVESVQIANQPVAETKPQISVVPVVHTIEPKKPTITVQAVPQKATIEVVVAPKNTPNVNAQSGQNSGSTNVPTGEITPRVEIESSPVKPKIQTTQVAENTPPTQTIEKTNTVSSVSSEVVKPVETPTPKKSPFAPKTIGENSFASVFRKHTLQTEQAENIDAINDRIEPAEKDEPEQIVVNSSATLSSPPTHADAATDEGLPVPEISNYSINPKRYNNGIFF
>NZ_CP019448.1|WP_002642790.1|2441655_2441859_-|hypothetical-protein
MWHIVLIGYVFTTMMFSLAQPSVARALIYLVFWTILPTVFAVWVAMVRRRNRIAKWQEQQNSANEKE
>NZ_CP019448.1|WP_002642791.1|2441932_2443204_-|LysM-peptidoglycan-binding-domain-containing-protein
MNKSIMTMLCVAGIAISAPVFAKGLQVKPNAPKRYVVKQGDTLWGISGKYLYRPYQWPSLWNVNRAKIRNPHWIYPGQVLYLTYVNGRPVLRVGKGASGRKSGFIKLHPQVRDLGSGYGIQTLDVDFYRLFMKHPQFVSANELTHAPRVVAGADGRNIYTNGDRIYADGIIEPGEYLSFRVVQDLKDPITGKSLGKLVEFSGELTTLSNDNTALAERNNSTALNGYSAKQRAKMEAKLAGDEYYVKLDSEKKPTAVRTAVPLQVKTAASEIMRGDYIIRKPDVITQFNAMPHTPDSPVEARIVSVMDGVSETGVGQSVILNKGLADGVDEGTVLSVYKGNRLVQTEWNNPDKKATKILSLPTEEVGLVMVYRTSEHASSAIVLESKSNVSTEDVLREPGQDLETFDDANFQKDGMIDTLKKSK
>NZ_CP019448.1|WP_002642792.1|2443355_2443871_+|peptide-deformylase
MALLPILKYPDPKLHTVAKPVSEVNDRIKKLVADMAETMYESRGIGLAATQVDVHERVVVIDLSEERNQLITLINPIITHKDGETTYEEGCLSVPGVYDTVTRAERVTVEFLDADGHAQKLDADGLLAICIQHELDHLQGKVFVEYLSPLKQNRIKTKMKKREREEMRHNM
>NZ_CP019448.1|WP_002642793.1|2443936_2445322_+|DNA-repair-protein-RadA
MAKAPKIVYQCTECGGTSPKWVGKCPHCGEWNTLTENLAAPESKNARFQSWAAETTQVQELSKVTAQEVPREATGMGELDRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIALMAKKRNVLYVSGEESAQQVALRSQRLGLNADGVHLLAEIRLEAIQAALKQHKPSVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMIFVGHVTKDGAIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAIFLASYRDDVAGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKISEPAADLAVILAMLSSFRNKPLPEKMVAFGEIGLSGEIRPVPRGQERLKEAEKLGFKRAIVPKANLPKNAPKDFPNLQIYGVDNLQDAVSLCRDLADE
>NZ_CP019448.1|WP_155999631.1|2445297_2445492_+|hypothetical-protein
MSRFGRRIIFRLPERTTHLVKQSAQSFSGCLKKRTIDTIIFLKTTRQPETLFRLPEQLMKAKHT
>NZ_CP019448.1|WP_002642794.1|2445488_2447375_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MIYPKTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPAIGGIGKGHLVREVDALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKVAIREMLENQENLELFQQAVTDITLDGDRVSGVNTAMGLEFKARSVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKTLGTRLREMNLPQGRLKTGTPPRIDGRTIDFSQLTEQAGDTPTPIFSVRGNQAMHPRQISCWITHTNLKTHEIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTTHEYYPNGISTSLPFDIQLALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASMETKTIAGLFFAGQINGTTGYEEAAAQGLLAGANAVQFVREQDPLLLRREQAYLGVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNADMRLTELGYRIGLVSEQQWRDFGTKRENIEREIQRLKSTWYTPLKLDVAEQERVFGQKLAREANLHDLLRRPNLDYTKLMTLPNALPESPLADDVVEQVEIQVKYQGYIDRQNDEIDSRRDIETLRLPENIDYAKVKGLSAEVQQKLNKYKPETVGQASRISGVTPAAVALLMVHLKRGFKEAK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP019448_1	1.3\|1168872\|28\|NZ_CP019448\|PILER-CR	1168872-1168899	28	NZ_CP019448.1	2465241-2465268	1.0
NZ_CP019448_2	2.1\|1372443\|32\|NZ_CP019448\|PILER-CR	1372443-1372474	32	NZ_CP019448.1	1372575-1372606	1.0
NZ_CP019448_2	2.1\|1372443\|32\|NZ_CP019448\|PILER-CR	1372443-1372474	32	NZ_CP019448.1	1372707-1372738	1.0

1. spacer 1.3|1168872|28|NZ_CP019448|PILER-CR matches to position: 2465241-2465268, mismatch: 0, identity: 1.0

ttggacgtagcaaaagccaaaggttggg	CRISPR spacer
ttggacgtagcaaaagccaaaggttggg	Protospacer
****************************

2. spacer 2.1|1372443|32|NZ_CP019448|PILER-CR matches to position: 1372575-1372606, mismatch: 0, identity: 1.0

tccaaatcgtgttggtgttgttcaacagtgat	CRISPR spacer
tccaaatcgtgttggtgttgttcaacagtgat	Protospacer
********************************

3. spacer 2.1|1372443|32|NZ_CP019448|PILER-CR matches to position: 1372707-1372738, mismatch: 0, identity: 1.0

tccaaatcgtgttggtgttgttcaacagtgat	CRISPR spacer
tccaaatcgtgttggtgttgttcaacagtgat	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019448_1	1.3\|1168872\|28\|NZ_CP019448\|PILER-CR	1168872-1168899	28	AY133112	Vibrio harveyi bacteriophage VHML, complete genome	33890-33917	5	0.821
NZ_CP019448_1	1.3\|1168872\|28\|NZ_CP019448\|PILER-CR	1168872-1168899	28	NC_004456	Vibrio phage VHML, complete genome	33890-33917	5	0.821
NZ_CP019448_1	1.2\|1168806\|28\|NZ_CP019448\|PILER-CR	1168806-1168833	28	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1855337-1855364	7	0.75
NZ_CP019448_2	2.1\|1372443\|32\|NZ_CP019448\|PILER-CR	1372443-1372474	32	MN642089	Klebsiella phage N1M2, complete genome	19395-19426	8	0.75
NZ_CP019448_2	2.1\|1372443\|32\|NZ_CP019448\|PILER-CR	1372443-1372474	32	MF417868	Uncultured Caudovirales phage clone 7AX_1, partial genome	73415-73446	8	0.75
NZ_CP019448_2	2.1\|1372443\|32\|NZ_CP019448\|PILER-CR	1372443-1372474	32	NC_016571	Pseudomonas phage OBP, complete genome	43108-43139	9	0.719
NZ_CP019448_2	2.1\|1372443\|32\|NZ_CP019448\|PILER-CR	1372443-1372474	32	KJ019069	Synechococcus phage ACG-2014j isolate Syn7803US103, complete genome	67286-67317	10	0.688
NZ_CP019448_2	2.1\|1372443\|32\|NZ_CP019448\|PILER-CR	1372443-1372474	32	NC_031900	Synechococcus phage S-CAM4 isolate 0809SB33, complete genome	67305-67336	10	0.688
NZ_CP019448_2	2.1\|1372443\|32\|NZ_CP019448\|PILER-CR	1372443-1372474	32	KU686202	Synechococcus phage S-CAM4 isolate 1010NB23, complete genome	67363-67394	10	0.688
NZ_CP019448_2	2.1\|1372443\|32\|NZ_CP019448\|PILER-CR	1372443-1372474	32	KU686200	Synechococcus phage S-CAM4 isolate 0309CC44, complete genome	67280-67311	10	0.688

1. spacer 1.3|1168872|28|NZ_CP019448|PILER-CR matches to AY133112 (Vibrio harveyi bacteriophage VHML, complete genome) position: , mismatch: 5, identity: 0.821

ttggacgtagcaaaagccaaaggttggg	CRISPR spacer
ttggacttagcaaaagccacaggcatgg	Protospacer
****** ************ ***.  **

2. spacer 1.3|1168872|28|NZ_CP019448|PILER-CR matches to NC_004456 (Vibrio phage VHML, complete genome) position: , mismatch: 5, identity: 0.821

ttggacgtagcaaaagccaaaggttggg	CRISPR spacer
ttggacttagcaaaagccacaggcatgg	Protospacer
****** ************ ***.  **

3. spacer 1.2|1168806|28|NZ_CP019448|PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

agtgatagatacgtgagcgcgtgagtga	CRISPR spacer
ggtgatagatacgtgatcgcgttgctcg	Protospacer
.*************** ***** . * .

4. spacer 2.1|1372443|32|NZ_CP019448|PILER-CR matches to MN642089 (Klebsiella phage N1M2, complete genome) position: , mismatch: 8, identity: 0.75

tccaaatcgtgttggtgttgttcaacagtgat	CRISPR spacer
gctgaaagctgttggtgttggtcaacagagat	Protospacer
 *..**   *********** ******* ***

5. spacer 2.1|1372443|32|NZ_CP019448|PILER-CR matches to MF417868 (Uncultured Caudovirales phage clone 7AX_1, partial genome) position: , mismatch: 8, identity: 0.75

tccaaatcgtgttggtgttgttcaacagtgat	CRISPR spacer
ttaatcccgtgttggtgtcgtttaacagtggt	Protospacer
*. *  .***********.***.*******.*

6. spacer 2.1|1372443|32|NZ_CP019448|PILER-CR matches to NC_016571 (Pseudomonas phage OBP, complete genome) position: , mismatch: 9, identity: 0.719

tccaaatcgtgttggtgttgttcaacagtgat	CRISPR spacer
gctgagagctgttggtgttggtcaacagagat	Protospacer
 *..*.   *********** ******* ***

7. spacer 2.1|1372443|32|NZ_CP019448|PILER-CR matches to KJ019069 (Synechococcus phage ACG-2014j isolate Syn7803US103, complete genome) position: , mismatch: 10, identity: 0.688

tccaaatcgtgttggtgttgttcaacagtgat	CRISPR spacer
gggaactagtgttggtgttgttcaaccaggtg	Protospacer
   ** * ****************** . *

8. spacer 2.1|1372443|32|NZ_CP019448|PILER-CR matches to NC_031900 (Synechococcus phage S-CAM4 isolate 0809SB33, complete genome) position: , mismatch: 10, identity: 0.688

tccaaatcgtgttggtgttgttcaacagtgat	CRISPR spacer
gggaactagtgttggtgttgttcaaccaggtg	Protospacer
   ** * ****************** . *

9. spacer 2.1|1372443|32|NZ_CP019448|PILER-CR matches to KU686202 (Synechococcus phage S-CAM4 isolate 1010NB23, complete genome) position: , mismatch: 10, identity: 0.688

tccaaatcgtgttggtgttgttcaacagtgat	CRISPR spacer
gggaactagtgttggtgttgttcaaccaggtg	Protospacer
   ** * ****************** . *

10. spacer 2.1|1372443|32|NZ_CP019448|PILER-CR matches to KU686200 (Synechococcus phage S-CAM4 isolate 0309CC44, complete genome) position: , mismatch: 10, identity: 0.688

tccaaatcgtgttggtgttgttcaacagtgat	CRISPR spacer
gggaactagtgttggtgttgttcaaccaggtg	Protospacer
   ** * ****************** . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

41279 : 49423

Streptococcus_phage(16.67%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002642691.1\|41279_43385_+	elongation factor G	E4ZFJ7	Streptococcus_phage	5.0e-60	28.4
WP_002642690.1\|43526_44060_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	1.9e-08	26.7
WP_002642689.1\|44186_44885_+	phosphate regulon transcriptional regulator PhoB	W8CYM9	Bacillus_phage	8.3e-28	33.3
WP_002642688.1\|44887_46162_+	phosphate regulon sensor histidine kinase PhoR	A0A1V0SGX0	Hokovirus	8.4e-18	26.5
WP_002642687.1\|46421_47696_-	hypothetical protein	NA	NA	NA	NA
WP_002641156.1\|47710_48466_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.3e-13	37.1
WP_002642685.1\|48477_48660_-	hypothetical protein	NA	NA	NA	NA
WP_002642684.1\|49045_49423_+	NirD/YgiW/YdeI family stress tolerance protein	A0A1I9LJU6	Stx_converting_phage	1.3e-11	38.7

DBSCAN-SWA_2

524558 : 550637

Pseudomonas_phage(50.0%)

terminase,tail,capsid,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002640932.1\|524558_526673_+\|transposase	Mu transposase C-terminal domain-containing protein	A0A1C6ZDN4	Pseudomonas_phage	7.4e-112	37.8
WP_002640931.1\|526779_527508_+	ATP-binding protein	A0A0A1IVZ3	Pseudomonas_phage	5.8e-56	50.2
WP_002640930.1\|527504_527774_+	hypothetical protein	NA	NA	NA	NA
WP_104930419.1\|527784_528108_+	hypothetical protein	NA	NA	NA	NA
WP_002640928.1\|528104_528317_+	hypothetical protein	NA	NA	NA	NA
WP_104930288.1\|528386_528857_-	hypothetical protein	NA	NA	NA	NA
WP_104930289.1\|528923_529397_+	hypothetical protein	NA	NA	NA	NA
WP_104930290.1\|529414_530011_+	host-nuclease inhibitor protein Gam	L7P7I4	Pseudomonas_phage	3.0e-26	41.2
WP_104930402.1\|529943_530162_+	hypothetical protein	NA	NA	NA	NA
WP_002643142.1\|530188_530461_+	HU family DNA-binding protein	NA	NA	NA	NA
WP_002642267.1\|531130_531583_+	hypothetical protein	A0A0A7DJP6	Pseudomonas_phage	1.7e-13	31.7
WP_002642268.1\|531722_531965_+	hypothetical protein	NA	NA	NA	NA
WP_155999587.1\|531997_532153_+	hypothetical protein	NA	NA	NA	NA
WP_002642269.1\|532149_532359_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002642270.1\|532511_533162_+	hypothetical protein	E2GM11	Acinetobacter_phage	1.4e-48	51.3
WP_104930420.1\|533331_533535_+	hypothetical protein	NA	NA	NA	NA
WP_002642272.1\|533534_533900_+	hypothetical protein	NA	NA	NA	NA
WP_155999591.1\|533904_534066_+	hypothetical protein	NA	NA	NA	NA
WP_002642274.1\|534062_534374_+	hypothetical protein	NA	NA	NA	NA
WP_002643136.1\|534412_534661_+	hypothetical protein	NA	NA	NA	NA
WP_002643135.1\|534651_534870_+	hypothetical protein	NA	NA	NA	NA
WP_002643134.1\|534878_535382_+	DUF1804 family protein	I6PBD1	Pseudomonas_phage	8.3e-38	48.8
WP_104930421.1\|535422_537024_+\|terminase	phage terminase large subunit	A0A0M3LQB7	Mannheimia_phage	3.7e-132	47.5
WP_104930291.1\|537081_538527_+	DUF935 family protein	NA	NA	NA	NA
WP_104930292.1\|538523_540233_+\|capsid	minor capsid protein	A0A1B1P712	Rhodovulum_phage	3.1e-44	40.4
WP_002643138.1\|540229_540598_+	hypothetical protein	NA	NA	NA	NA
WP_104930422.1\|541185_541986_+	hypothetical protein	NA	NA	NA	NA
WP_002642879.1\|542017_542380_+	hypothetical protein	NA	NA	NA	NA
WP_002642878.1\|542564_543566_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	3.2e-33	32.9
WP_002642877.1\|543565_544009_+	DUF1320 domain-containing protein	A0A2D1GNP0	Pseudomonas_phage	4.1e-12	40.7
WP_002642876.1\|543989_544478_+	phage virion morphogenesis protein	R9U1C4	Rhizobium_phage	4.8e-06	28.2
WP_002642875.1\|544477_544939_+	hypothetical protein	NA	NA	NA	NA
WP_002642874.1\|544942_545704_+	hypothetical protein	NA	NA	NA	NA
WP_002642873.1\|545792_549515_+\|tail	phage tail tape measure protein	A0A1B2LRQ0	Wolbachia_phage	2.6e-35	32.7
WP_104930280.1\|549755_550637_+\|transposase	IS982 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

614540 : 625440

Stenotrophomonas_phage(16.67%)

tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002641656.1\|614540_616235_-	hypothetical protein	B7SYE9	Stenotrophomonas_phage	1.9e-54	28.3
WP_104930294.1\|616252_618124_-	hypothetical protein	A0A076G7Z6	Pseudoalteromonas_phage	6.3e-46	28.8
WP_104930295.1\|618171_622212_-\|tail	phage tail tape measure protein	A0A1B2LRQ0	Wolbachia_phage	2.8e-35	32.7
WP_002642874.1\|622300_623062_-	hypothetical protein	NA	NA	NA	NA
WP_002642875.1\|623065_623527_-	hypothetical protein	NA	NA	NA	NA
WP_002642970.1\|623526_624015_-	phage virion morphogenesis protein	R9U1C4	Rhizobium_phage	4.8e-06	28.2
WP_002642877.1\|623995_624439_-	DUF1320 domain-containing protein	A0A2D1GNP0	Pseudomonas_phage	4.1e-12	40.7
WP_002642878.1\|624438_625440_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	3.2e-33	32.9

DBSCAN-SWA_4

721435 : 772664

Burkholderia_phage(11.11%)

integrase,transposase

attL 722488:722513|attR 758741:758766

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104930300.1\|721435_722437_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	1.7e-18	27.3
722488:722513	attL	NA	NA	NA	NA
WP_002642888.1\|722635_723232_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_002642887.1\|723316_723793_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_002642886.1\|724205_724484_+	hypothetical protein	NA	NA	NA	NA
WP_002642885.1\|724673_725624_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_002642884.1\|725670_726117_-	hypothetical protein	NA	NA	NA	NA
WP_002642883.1\|726427_727420_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	4.0e-15	27.6
WP_002643123.1\|727592_728033_+	energy transducer TonB	NA	NA	NA	NA
WP_002643122.1\|728115_729156_-	hypothetical protein	A0JC28	Ralstonia_phage	6.8e-42	34.8
WP_104930427.1\|729162_729432_-	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_170021079.1\|729951_731448_-	hypothetical protein	NA	NA	NA	NA
WP_002643002.1\|731615_731951_-	hypothetical protein	NA	NA	NA	NA
WP_002643001.1\|731968_732205_-	hypothetical protein	NA	NA	NA	NA
WP_002643000.1\|732295_732604_-	hypothetical protein	NA	NA	NA	NA
WP_104930303.1\|732600_734214_-	replication initiation factor domain-containing protein	S0F3I3	Stenotrophomonas_phage	6.2e-18	48.3
WP_002642998.1\|734421_736239_-	translational GTPase TypA	NA	NA	NA	NA
WP_002642997.1\|736419_737340_-	hydrogen peroxide-inducible genes activator	NA	NA	NA	NA
WP_002642996.1\|737342_737660_-	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_002642995.1\|737663_738479_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_002642994.1\|738549_739605_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_002214728.1\|739932_740067_+	50S ribosomal protein L34	NA	NA	NA	NA
WP_040629541.1\|740068_740419_+	ribonuclease P protein component	NA	NA	NA	NA
WP_002642992.1\|740548_740761_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_002642991.1\|740776_742444_+	membrane protein insertase YidC	NA	NA	NA	NA
WP_002642990.1\|742781_743588_-	transferrin-binding protein-like solute binding protein	NA	NA	NA	NA
WP_155999659.1\|743948_744059_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002642989.1\|744248_744722_-	bacterioferritin	NA	NA	NA	NA
WP_002642988.1\|744734_745199_-	bacterioferritin	NA	NA	NA	NA
WP_002642987.1\|745612_746443_-	PHP domain-containing protein	NA	NA	NA	NA
WP_002642986.1\|746435_747110_-	HAD-IA family hydrolase	NA	NA	NA	NA
WP_040629560.1\|747290_748421_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_002642984.1\|748525_749332_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002642983.1\|749744_750518_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_002642982.1\|750524_751109_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_104930304.1\|751779_755559_-	hypothetical protein	NA	NA	NA	NA
WP_104930428.1\|755947_756361_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_002642979.1\|756373_757030_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.0e-52	50.9
WP_002642978.1\|757044_757641_-	helix-turn-helix transcriptional regulator	A0A0S2SYF7	Pseudomonas_phage	2.2e-05	28.0
WP_002642977.1\|757729_758614_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	1.1e-27	30.2
WP_002642976.1\|758754_760776_-	S9 family peptidase	NA	NA	NA	NA
758741:758766	attR	NA	NA	NA	NA
WP_002642975.1\|760802_762725_-	FHA domain-containing protein	NA	NA	NA	NA
WP_040629549.1\|762795_763386_-	hypothetical protein	NA	NA	NA	NA
WP_002642973.1\|763499_765398_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_040629539.1\|765716_765962_-	hypothetical protein	NA	NA	NA	NA
WP_169315049.1\|766048_766615_+	hypothetical protein	NA	NA	NA	NA
WP_040629535.1\|766611_766962_-	helix-turn-helix domain-containing protein	A0A139ZPP0	Marinitoga_camini_virus	8.5e-05	43.1
WP_104930305.1\|767060_767408_-	hypothetical protein	NA	NA	NA	NA
WP_104930306.1\|767418_768300_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_002642801.1\|768487_769243_-	conjugal transfer protein TraL	NA	NA	NA	NA
WP_002642802.1\|769336_769897_-	hypothetical protein	NA	NA	NA	NA
WP_155999635.1\|769996_770422_-	hypothetical protein	NA	NA	NA	NA
WP_104930308.1\|770760_771594_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_158666808.1\|771579_771765_-	hypothetical protein	NA	NA	NA	NA
WP_002641156.1\|771908_772664_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.3e-13	37.1

DBSCAN-SWA_5

789815 : 847585

Paenibacillus_phage(37.5%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002641862.1\|789815_790817_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	5.9e-19	27.3
WP_002641860.1\|792046_793411_-	signal recognition particle protein	NA	NA	NA	NA
WP_002641859.1\|793520_794594_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_104930306.1\|795659_796541_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_002641856.1\|796526_797672_-	hypothetical protein	NA	NA	NA	NA
WP_040628907.1\|798308_798863_-	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	4.6e-29	40.1
WP_002641854.1\|799341_800334_+	biotin synthase BioB	NA	NA	NA	NA
WP_002641853.1\|800351_801224_+	hypothetical protein	NA	NA	NA	NA
WP_002641156.1\|802011_802767_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.3e-13	37.1
WP_002641850.1\|802854_803913_+	hypothetical protein	NA	NA	NA	NA
WP_002641849.1\|803916_805089_+	hypothetical protein	NA	NA	NA	NA
WP_040628939.1\|805109_805646_+	ATP/GTP-binding protein	NA	NA	NA	NA
WP_002641847.1\|805649_806306_+	hypothetical protein	NA	NA	NA	NA
WP_002641846.1\|806330_806696_+	roadblock/LC7 domain-containing protein	NA	NA	NA	NA
WP_002641845.1\|806825_807305_-	copper chaperone PCu(A)C	NA	NA	NA	NA
WP_002641844.1\|807516_808533_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.3e-85	48.6
WP_040628906.1\|808596_809145_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002641842.1\|809198_809816_-	hypothetical protein	NA	NA	NA	NA
WP_002641841.1\|810078_811890_+	hypothetical protein	NA	NA	NA	NA
WP_002641156.1\|812203_812959_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.3e-13	37.1
WP_081578987.1\|813130_814015_+	transferrin-binding protein-like solute binding protein	NA	NA	NA	NA
WP_104930315.1\|814099_815524_+	DUF560 domain-containing protein	NA	NA	NA	NA
WP_002641837.1\|815755_818152_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	4.0e-122	36.7
WP_002641836.1\|818320_818749_+	hypothetical protein	NA	NA	NA	NA
WP_002641835.1\|818763_818964_+	hypothetical protein	NA	NA	NA	NA
WP_002641834.1\|824960_825434_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_002641833.1\|825634_827062_+	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	6.0e-41	31.6
WP_158666809.1\|827048_827297_+	hypothetical protein	NA	NA	NA	NA
WP_104930316.1\|827263_828160_+	DUF459 domain-containing protein	NA	NA	NA	NA
WP_158666810.1\|828327_829305_+	hypothetical protein	NA	NA	NA	NA
WP_002641830.1\|829360_830419_-	alanine racemase	NA	NA	NA	NA
WP_002641829.1\|830592_830841_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_040628904.1\|830848_831358_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002641827.1\|831357_832107_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_002641826.1\|832132_832501_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_002641825.1\|832639_833431_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_002641824.1\|833555_833924_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_002641823.1\|834117_834930_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_002641822.1\|835143_835776_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_002641821.1\|835777_836257_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_002641819.1\|837942_839256_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_104930430.1\|839393_841355_-	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_002641156.1\|845872_846628_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.3e-13	37.1
WP_104930317.1\|846703_847585_-\|transposase	IS982 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1021710 : 1032637

Klosneuvirus(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002641664.1\|1021710_1023765_+	M3 family metallopeptidase	A0A1V0SIU1	Klosneuvirus	2.0e-37	24.7
WP_002641663.1\|1023878_1024076_-	hypothetical protein	NA	NA	NA	NA
WP_002641662.1\|1024168_1025047_+	DNA adenine methylase	A0A0H3UZK1	Geobacillus_virus	4.4e-26	31.0
WP_002641156.1\|1025154_1025910_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.3e-13	37.1
WP_002641659.1\|1025975_1026698_-	hypothetical protein	NA	NA	NA	NA
WP_002641658.1\|1026748_1029598_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	9.1e-307	55.5
WP_002642883.1\|1029908_1030901_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	4.0e-15	27.6
WP_002643123.1\|1031073_1031514_+	energy transducer TonB	NA	NA	NA	NA
WP_002643122.1\|1031596_1032637_-	hypothetical protein	A0JC28	Ralstonia_phage	6.8e-42	34.8

DBSCAN-SWA_7

1265815 : 1310429

Thermus_phage(16.67%)

integrase,tRNA,transposase

attL 1282052:1282073|attR 1321987:1322008

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002641156.1\|1265815_1266571_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.3e-13	37.1
WP_104930338.1\|1266585_1266945_+	hypothetical protein	NA	NA	NA	NA
WP_104930339.1\|1266972_1267215_+	hypothetical protein	NA	NA	NA	NA
WP_002643036.1\|1267511_1268504_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	8.8e-15	27.1
WP_002643037.1\|1268649_1269732_-	hypothetical protein	NA	NA	NA	NA
WP_002643038.1\|1269735_1270020_-	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_158666819.1\|1270022_1271627_-	hypothetical protein	NA	NA	NA	NA
WP_002643005.1\|1271568_1271871_-	DUF1132 family protein	NA	NA	NA	NA
WP_002642623.1\|1271978_1272338_-	hypothetical protein	NA	NA	NA	NA
WP_104930341.1\|1272355_1272586_-	hypothetical protein	NA	NA	NA	NA
WP_002643008.1\|1272679_1272988_-	hypothetical protein	NA	NA	NA	NA
WP_002642620.1\|1272984_1274598_-	replication initiation factor domain-containing protein	S0F3I3	Stenotrophomonas_phage	1.1e-17	48.3
WP_002643010.1\|1274738_1275803_+	calcium-binding protein	NA	NA	NA	NA
WP_002643012.1\|1276820_1277204_+	aspartate 1-decarboxylase	NA	NA	NA	NA
WP_002643013.1\|1277231_1278023_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_002643014.1\|1278027_1279515_+	anthranilate synthase component I	NA	NA	NA	NA
WP_002643015.1\|1279596_1280187_+	LemA family protein	NA	NA	NA	NA
WP_002643016.1\|1280327_1281254_+	TPM domain-containing protein	NA	NA	NA	NA
WP_002643017.1\|1281256_1281769_+	TPM domain-containing protein	NA	NA	NA	NA
WP_155999665.1\|1281758_1281920_-	hypothetical protein	NA	NA	NA	NA
1282052:1282073	attL	NA	NA	NA	NA
WP_002643018.1\|1282100_1283270_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.5e-122	60.4
WP_002643019.1\|1283357_1285217_-	Fe-S protein assembly chaperone HscA	F2Y0P3	Organic_Lake_phycodnavirus	1.6e-110	45.1
WP_002643020.1\|1285343_1285652_-	Grx4 family monothiol glutaredoxin	A0A248SKD6	Salicola_phage	7.4e-05	32.8
WP_051010382.1\|1285706_1286702_-\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA
WP_002643022.1\|1286821_1287988_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4J8L8	uncultured_Caudovirales_phage	2.8e-92	44.7
WP_002643023.1\|1288133_1288415_-	pyocin activator PrtN family protein	A0A2H4JC88	uncultured_Caudovirales_phage	3.6e-14	40.7
WP_002643024.1\|1288398_1288701_-	hypothetical protein	NA	NA	NA	NA
WP_002643025.1\|1288730_1289669_-	hypothetical protein	NA	NA	NA	NA
WP_002643026.1\|1289671_1289896_-	hypothetical protein	NA	NA	NA	NA
WP_002643027.1\|1289913_1290219_-	hypothetical protein	NA	NA	NA	NA
WP_002643028.1\|1290550_1290946_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_002643029.1\|1290957_1291206_-	hypothetical protein	NA	NA	NA	NA
WP_002643030.1\|1291216_1291822_-	LexA family transcriptional regulator	NA	NA	NA	NA
WP_155999668.1\|1291933_1292125_+	hypothetical protein	NA	NA	NA	NA
WP_002643032.1\|1292117_1292702_+	KilA-N domain-containing protein	Q8SBE6	Shigella_phage	2.6e-22	52.3
WP_002643033.1\|1293122_1294061_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_002643035.1\|1294468_1294789_-	hypothetical protein	NA	NA	NA	NA
WP_002643036.1\|1295099_1296092_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	8.8e-15	27.1
WP_002643037.1\|1296237_1297320_-	hypothetical protein	NA	NA	NA	NA
WP_002643038.1\|1297323_1297608_-	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_104930342.1\|1297610_1299257_-	hypothetical protein	NA	NA	NA	NA
WP_002643006.1\|1299602_1299962_-	hypothetical protein	NA	NA	NA	NA
WP_104930343.1\|1299979_1300210_-	hypothetical protein	NA	NA	NA	NA
WP_002642621.1\|1300303_1300612_-	hypothetical protein	NA	NA	NA	NA
WP_002642620.1\|1300608_1302222_-	replication initiation factor domain-containing protein	S0F3I3	Stenotrophomonas_phage	1.1e-17	48.3
WP_081578998.1\|1302313_1303117_-	hypothetical protein	NA	NA	NA	NA
WP_002642618.1\|1303452_1303737_-	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_081578996.1\|1303740_1304199_-	hypothetical protein	NA	NA	NA	NA
WP_002642615.1\|1305495_1305783_-	hypothetical protein	NA	NA	NA	NA
WP_002642614.1\|1305767_1306244_-	hypothetical protein	NA	NA	NA	NA
WP_002642613.1\|1306320_1306551_-	membrane protein	NA	NA	NA	NA
WP_002642612.1\|1306643_1306991_-	hypothetical protein	NA	NA	NA	NA
WP_002642611.1\|1307072_1307288_-	hypothetical protein	NA	NA	NA	NA
WP_002642610.1\|1307291_1307621_-	hypothetical protein	NA	NA	NA	NA
WP_002642609.1\|1307631_1308918_-	replication initiation factor domain-containing protein	A0JC21	Ralstonia_phage	4.8e-29	37.1
WP_002642608.1\|1309003_1309390_-	hypothetical protein	NA	NA	NA	NA
WP_002642607.1\|1309502_1310429_-\|transposase	IS5 family transposase	NA	NA	NA	NA
1321987:1322008	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1498733 : 1506653

Paenibacillus_phage(12.5%)

terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002641156.1\|1498733_1499489_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.3e-13	37.1
WP_104930352.1\|1499554_1499821_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_104930353.1\|1499947_1500199_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_104930354.1\|1500313_1500580_+	hypothetical protein	NA	NA	NA	NA
WP_104930355.1\|1500576_1500951_+	replication protein	A0A0P0IKQ2	Acinetobacter_phage	1.5e-15	46.2
WP_155999575.1\|1501026_1501452_+	hypothetical protein	D0UIL5	Aggregatibacter_phage	4.9e-07	33.0
WP_002642195.1\|1501462_1502302_+	ATP-binding protein	A0A2I7QQL5	Vibrio_phage	2.6e-23	31.4
WP_002642194.1\|1502349_1502508_+	hypothetical protein	NA	NA	NA	NA
WP_002642193.1\|1502504_1502771_+	hypothetical protein	NA	NA	NA	NA
WP_002642192.1\|1502757_1503024_+	hypothetical protein	NA	NA	NA	NA
WP_002642191.1\|1503321_1503849_+	hypothetical protein	NA	NA	NA	NA
WP_002642190.1\|1503889_1504441_+	recombination protein NinG	A0A2H4JGI2	uncultured_Caudovirales_phage	1.5e-35	46.7
WP_104930440.1\|1504506_1504875_+	recombination protein NinB	Q7Y5V7	Haemophilus_phage	7.7e-33	62.7
WP_002642188.1\|1504905_1505505_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002642187.1\|1505501_1506029_+\|terminase	terminase small subunit	A0A0M3LSU1	Mannheimia_phage	3.9e-22	44.4
WP_051010367.1\|1506170_1506653_+	Rha family transcriptional regulator	A0A2I6PG18	Plesiomonas_phage	8.6e-16	35.4

DBSCAN-SWA_9

1518274 : 1540488

Mannheimia_phage(25.0%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104930359.1\|1518274_1521937_-	tape measure protein	A5A3Q5	Burkholderia_phage	2.7e-29	26.9
WP_002643041.1\|1521998_1522394_-	hypothetical protein	NA	NA	NA	NA
WP_002643042.1\|1522405_1522558_-	hypothetical protein	NA	NA	NA	NA
WP_002643043.1\|1522753_1523497_-	hypothetical protein	A0A2D2W2E0	Stenotrophomonas_phage	6.8e-20	29.4
WP_002643044.1\|1523574_1524009_-	hypothetical protein	NA	NA	NA	NA
WP_002643045.1\|1524034_1524451_-	phage virion morphogenesis protein	NA	NA	NA	NA
WP_002643046.1\|1524450_1524972_-	hypothetical protein	A0A0M3LSP7	Mannheimia_phage	3.5e-07	29.1
WP_002643047.1\|1525000_1525294_-	hypothetical protein	A0A0M3LS62	Mannheimia_phage	9.9e-07	40.6
WP_002643048.1\|1525358_1526291_-	hypothetical protein	A0A0M3LQL5	Mannheimia_phage	7.5e-117	67.5
WP_002643049.1\|1526340_1527093_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	6.0e-32	41.2
WP_002643050.1\|1527201_1527543_-	hypothetical protein	NA	NA	NA	NA
WP_155999671.1\|1527532_1529047_-	hypothetical protein	NA	NA	NA	NA
WP_002643052.1\|1529021_1530419_-	DUF4055 domain-containing protein	A0A0M3LQA1	Mannheimia_phage	2.1e-102	44.9
WP_002643053.1\|1530444_1531668_-\|terminase	PBSX family phage terminase large subunit	A0A1J0GWB1	Alteromonas_phage	3.3e-136	60.7
WP_002643054.1\|1531648_1532032_-	hypothetical protein	A0A2I7RQ75	Vibrio_phage	8.6e-27	60.0
WP_002643055.1\|1532035_1532722_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_002643056.1\|1532711_1533380_-	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA
WP_002643057.1\|1533391_1533592_-	hypothetical protein	NA	NA	NA	NA
WP_002643058.1\|1533660_1534122_-	ASCH domain-containing protein	I6RTQ6	Croceibacter_phage	1.3e-08	35.8
WP_002643059.1\|1534181_1534409_+	transcriptional regulator	NA	NA	NA	NA
WP_002643060.1\|1534579_1535077_-	hypothetical protein	NA	NA	NA	NA
WP_002643061.1\|1535144_1535819_-	site-specific DNA-methyltransferase	B3GAM4	uncultured_virus	2.8e-28	35.7
WP_002643062.1\|1535831_1536128_-	DUF1364 domain-containing protein	E5AGG0	Erwinia_phage	5.6e-26	56.8
WP_002643063.1\|1536130_1536739_-	DUF1367 family protein	A0A2I7RSZ0	Vibrio_phage	5.6e-28	36.0
WP_002643064.1\|1536752_1537223_-	hypothetical protein	NA	NA	NA	NA
WP_104930360.1\|1537215_1537743_-	hypothetical protein	NA	NA	NA	NA
WP_002642192.1\|1538040_1538307_-	hypothetical protein	NA	NA	NA	NA
WP_002642193.1\|1538293_1538560_-	hypothetical protein	NA	NA	NA	NA
WP_002642194.1\|1538556_1538715_-	hypothetical protein	NA	NA	NA	NA
WP_002642195.1\|1538762_1539602_-	ATP-binding protein	A0A2I7QQL5	Vibrio_phage	2.6e-23	31.4
WP_155999575.1\|1539612_1540038_-	hypothetical protein	D0UIL5	Aggregatibacter_phage	4.9e-07	33.0
WP_104930355.1\|1540113_1540488_-	replication protein	A0A0P0IKQ2	Acinetobacter_phage	1.5e-15	46.2

DBSCAN-SWA_10

1692821 : 1700479

Plesiomonas_phage(12.5%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_051010367.1\|1692821_1693304_-	Rha family transcriptional regulator	A0A2I6PG18	Plesiomonas_phage	8.6e-16	35.4
WP_002642187.1\|1693445_1693973_-\|terminase	terminase small subunit	A0A0M3LSU1	Mannheimia_phage	3.9e-22	44.4
WP_002642188.1\|1693969_1694569_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_104930440.1\|1694599_1694968_-	recombination protein NinB	Q7Y5V7	Haemophilus_phage	7.7e-33	62.7
WP_002642190.1\|1695033_1695585_-	recombination protein NinG	A0A2H4JGI2	uncultured_Caudovirales_phage	1.5e-35	46.7
WP_002642191.1\|1695625_1696153_-	hypothetical protein	NA	NA	NA	NA
WP_002642192.1\|1696450_1696717_-	hypothetical protein	NA	NA	NA	NA
WP_002642193.1\|1696703_1696970_-	hypothetical protein	NA	NA	NA	NA
WP_002642194.1\|1696966_1697125_-	hypothetical protein	NA	NA	NA	NA
WP_002642195.1\|1697172_1698012_-	ATP-binding protein	A0A2I7QQL5	Vibrio_phage	2.6e-23	31.4
WP_155999575.1\|1698022_1698448_-	hypothetical protein	D0UIL5	Aggregatibacter_phage	4.9e-07	33.0
WP_104930355.1\|1698523_1698898_-	replication protein	A0A0P0IKQ2	Acinetobacter_phage	1.5e-15	46.2
WP_104930354.1\|1698894_1699161_-	hypothetical protein	NA	NA	NA	NA
WP_155999577.1\|1699275_1699446_-	hypothetical protein	NA	NA	NA	NA
WP_002642198.1\|1699465_1699672_-	hypothetical protein	NA	NA	NA	NA
WP_104930366.1\|1699813_1700479_+	helix-turn-helix domain-containing protein	F1C599	Cronobacter_phage	5.0e-14	51.1

DBSCAN-SWA_11

1755649 : 1808220

Pseudomonas_phage(20.0%)

transposase,terminase,capsid,tail,integrase

attL 1752313:1752337|attR 1794927:1794951

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1752313:1752337	attL	NA	NA	NA	NA
WP_040629062.1\|1755649_1756489_-	DNA adenine methylase	A0A0R6PH56	Moraxella_phage	1.3e-83	53.1
WP_002642255.1\|1756620_1756974_-	hypothetical protein	NA	NA	NA	NA
WP_002642256.1\|1756970_1757465_-	hypothetical protein	NA	NA	NA	NA
WP_002642257.1\|1758045_1758414_-	helix-turn-helix transcriptional regulator	A0A1S5NPU3	Burkholderia_phage	4.3e-07	37.5
WP_002642258.1\|1758531_1758708_+	DNA-binding protein	B5TA78	Burkholderia_phage	7.7e-07	42.9
WP_002642259.1\|1758846_1760970_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0M3LPN5	Mannheimia_phage	1.6e-101	36.1
WP_002642260.1\|1761011_1761911_+	AAA family ATPase	A0A0M3LP72	Mannheimia_phage	1.4e-43	36.3
WP_104930374.1\|1762072_1762285_+	hypothetical protein	NA	NA	NA	NA
WP_002642262.1\|1762338_1762509_+	hypothetical protein	NA	NA	NA	NA
WP_104930375.1\|1762501_1762984_+	hypothetical protein	NA	NA	NA	NA
WP_002642264.1\|1763001_1763535_+	hypothetical protein	L7P7I4	Pseudomonas_phage	4.1e-27	41.3
WP_002642265.1\|1763531_1763750_+	hypothetical protein	NA	NA	NA	NA
WP_002642266.1\|1763925_1764360_+	regulatory protein GemA	X4YFN0	Pseudomonas_phage	4.9e-18	43.8
WP_002642267.1\|1764350_1764803_+	hypothetical protein	A0A0A7DJP6	Pseudomonas_phage	1.7e-13	31.7
WP_002642268.1\|1764942_1765185_+	hypothetical protein	NA	NA	NA	NA
WP_155999587.1\|1765217_1765373_+	hypothetical protein	NA	NA	NA	NA
WP_002642269.1\|1765369_1765579_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002642270.1\|1765731_1766382_+	hypothetical protein	E2GM11	Acinetobacter_phage	1.4e-48	51.3
WP_040629144.1\|1766551_1766755_+	hypothetical protein	NA	NA	NA	NA
WP_002642272.1\|1766754_1767120_+	hypothetical protein	NA	NA	NA	NA
WP_155999591.1\|1767124_1767286_+	hypothetical protein	NA	NA	NA	NA
WP_002642274.1\|1767282_1767594_+	hypothetical protein	NA	NA	NA	NA
WP_104930376.1\|1767660_1769109_+\|terminase	phage terminase large subunit	A0A0M3LQB7	Mannheimia_phage	1.6e-126	50.1
WP_002643111.1\|1769166_1770612_+	DUF935 family protein	NA	NA	NA	NA
WP_002643110.1\|1770608_1772342_+\|capsid	minor capsid protein	A0A1B1P712	Rhodovulum_phage	2.1e-43	39.1
WP_002642881.1\|1772338_1772674_+	hypothetical protein	NA	NA	NA	NA
WP_104930422.1\|1773275_1774076_+	hypothetical protein	NA	NA	NA	NA
WP_002642879.1\|1774107_1774470_+	hypothetical protein	NA	NA	NA	NA
WP_002642878.1\|1774654_1775656_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	3.2e-33	32.9
WP_002642877.1\|1775655_1776099_+	DUF1320 domain-containing protein	A0A2D1GNP0	Pseudomonas_phage	4.1e-12	40.7
WP_002642876.1\|1776079_1776568_+	phage virion morphogenesis protein	R9U1C4	Rhizobium_phage	4.8e-06	28.2
WP_002642875.1\|1776567_1777029_+	hypothetical protein	NA	NA	NA	NA
WP_002642874.1\|1777032_1777794_+	hypothetical protein	NA	NA	NA	NA
WP_104930295.1\|1777882_1781923_+\|tail	phage tail tape measure protein	A0A1B2LRQ0	Wolbachia_phage	2.8e-35	32.7
WP_104930294.1\|1781970_1783842_+	hypothetical protein	A0A076G7Z6	Pseudoalteromonas_phage	6.3e-46	28.8
WP_002641656.1\|1783859_1785554_+	hypothetical protein	B7SYE9	Stenotrophomonas_phage	1.9e-54	28.3
WP_002641655.1\|1785566_1786457_+	hypothetical protein	NA	NA	NA	NA
WP_002641654.1\|1786457_1786751_+	hypothetical protein	NA	NA	NA	NA
WP_104930377.1\|1786754_1788554_+	hypothetical protein	NA	NA	NA	NA
WP_002641652.1\|1788582_1788816_+	hypothetical protein	NA	NA	NA	NA
WP_002641651.1\|1788826_1789294_+	hypothetical protein	NA	NA	NA	NA
WP_002641650.1\|1789294_1789666_+	hypothetical protein	NA	NA	NA	NA
WP_002641649.1\|1789652_1790099_+	lysozyme	A0A0M5M782	Salmonella_phage	1.8e-31	52.1
WP_104930378.1\|1790115_1790805_+	hypothetical protein	A0A0B5A6U7	Achromobacter_phage	7.7e-18	40.5
WP_002641646.1\|1792468_1793821_-	SLC45 family MFS transporter	NA	NA	NA	NA
WP_002641645.1\|1794273_1794822_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_002641644.1\|1794955_1796059_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
1794927:1794951	attR	NA	NA	NA	NA
WP_155999542.1\|1796094_1796250_-	hypothetical protein	NA	NA	NA	NA
WP_040628738.1\|1796263_1797016_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_002641642.1\|1797009_1797192_-	Trm112 family protein	NA	NA	NA	NA
WP_002641641.1\|1797249_1797816_-	DUF2059 domain-containing protein	NA	NA	NA	NA
WP_002641640.1\|1797860_1798487_-	PH domain-containing protein	NA	NA	NA	NA
WP_002641639.1\|1798606_1800829_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_002641638.1\|1801388_1801958_-	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_002641637.1\|1802145_1803192_-	hypothetical protein	NA	NA	NA	NA
WP_104930379.1\|1803396_1804056_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_104930380.1\|1804004_1807016_-	exodeoxyribonuclease V subunit beta	A0A1P8CWU5	Bacillus_phage	2.1e-11	22.5
WP_104930280.1\|1807338_1808220_+\|transposase	IS982 family transposase	NA	NA	NA	NA

DBSCAN-SWA_12

1822537 : 1917563

102

uncultured_Caudovirales_phage(18.18%)

tRNA,transposase,head,terminase,capsid,portal,tail,protease,integrase

attL 1807234:1807293|attR 1893082:1894078

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1807234:1807293	attL	NA	NA	NA	NA
WP_104930383.1\|1822537_1823293_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.0e-23	49.6
WP_104930384.1\|1823342_1823831_-	CdiI family contact-dependent growth inhibition immunity protein	NA	NA	NA	NA
WP_158666826.1\|1823830_1823980_-	hypothetical protein	NA	NA	NA	NA
WP_104930385.1\|1824115_1824961_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_155999538.1\|1825233_1825437_-	hypothetical protein	NA	NA	NA	NA
WP_155999536.1\|1825435_1825576_+	hypothetical protein	NA	NA	NA	NA
WP_002641619.1\|1825559_1826255_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_002641618.1\|1826329_1827364_-	ferrochelatase	NA	NA	NA	NA
WP_002641617.1\|1827424_1827919_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.2e-20	42.2
WP_002641616.1\|1828013_1829528_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	2.8e-89	38.0
WP_104930450.1\|1830094_1830565_+	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	2.9e-24	43.2
WP_040628733.1\|1830633_1830990_+	roadblock/LC7 domain-containing protein	NA	NA	NA	NA
WP_040628848.1\|1831094_1831598_+	PAS domain-containing protein	NA	NA	NA	NA
WP_051010344.1\|1831621_1832368_+	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_040628846.1\|1832442_1834704_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_040628844.1\|1834791_1835454_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_002641609.1\|1835484_1836222_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_002641608.1\|1836361_1836775_+	DUF937 domain-containing protein	NA	NA	NA	NA
WP_002641607.1\|1836844_1837591_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.8e-32	39.8
WP_040628730.1\|1837610_1838327_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_002641605.1\|1838456_1839716_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	7.5e-120	53.6
WP_002641604.1\|1839807_1840728_-	pseudouridine synthase	NA	NA	NA	NA
WP_002641603.1\|1841165_1842617_+	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	6.6e-19	27.1
WP_002641602.1\|1842861_1843446_-\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
WP_104930386.1\|1843496_1843775_-	PIN domain-containing protein	NA	NA	NA	NA
WP_002641156.1\|1843799_1844555_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.3e-13	37.1
WP_002641599.1\|1845917_1846583_+	beta-phosphoglucomutase	NA	NA	NA	NA
WP_002641598.1\|1846680_1847874_-	acetate kinase	NA	NA	NA	NA
WP_002641597.1\|1848259_1849384_+	homoserine O-acetyltransferase	NA	NA	NA	NA
WP_002641596.1\|1849386_1849734_+	hypothetical protein	NA	NA	NA	NA
WP_002641595.1\|1849785_1850811_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_040628727.1\|1850842_1852312_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_002641593.1\|1852445_1853042_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_002641592.1\|1853044_1854334_-\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_040628723.1\|1854589_1854823_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_002641590.1\|1854874_1855384_-	cytochrome b	NA	NA	NA	NA
WP_002641589.1\|1855728_1856187_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_155999534.1\|1857277_1857430_-	hypothetical protein	NA	NA	NA	NA
WP_040628840.1\|1857526_1858951_+	sodium:proton antiporter	NA	NA	NA	NA
WP_002641586.1\|1859061_1860531_-	pyruvate kinase	NA	NA	NA	NA
WP_002641585.1\|1860877_1861072_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_002641584.1\|1861177_1862350_+	O-succinylhomoserine sulfhydrylase	NA	NA	NA	NA
WP_002641583.1\|1862445_1862643_+	DUF2788 domain-containing protein	NA	NA	NA	NA
WP_002641582.1\|1862688_1863243_+	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_002641581.1\|1863431_1864202_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_002641580.1\|1864393_1864582_+	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_002641579.1\|1864581_1865253_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_002641578.1\|1865305_1866235_-	branched-chain amino acid transaminase	NA	NA	NA	NA
WP_040628838.1\|1866447_1866765_+	DUF1049 domain-containing protein	NA	NA	NA	NA
WP_002641576.1\|1866854_1868024_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
WP_002641575.1\|1868215_1869646_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA
WP_002641574.1\|1869720_1870281_+	FixH family protein	NA	NA	NA	NA
WP_002641573.1\|1870640_1872077_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_002641572.1\|1872182_1874147_+	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	1.3e-46	37.4
WP_169315043.1\|1874192_1874435_-	Fis family transcriptional regulator	NA	NA	NA	NA
WP_002641570.1\|1874795_1875482_-	response regulator transcription factor	W8CYM9	Bacillus_phage	5.7e-29	35.3
WP_155999532.1\|1875649_1877536_-	O-antigen ligase C-terminal domain-containing protein	NA	NA	NA	NA
WP_040628719.1\|1877624_1878632_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_002641567.1\|1878869_1879553_-\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA
WP_104930300.1\|1879606_1880608_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	1.7e-18	27.3
WP_104930387.1\|1880561_1881089_-\|tRNA	tRNA-dihydrouridine synthase family protein	NA	NA	NA	NA
WP_002641564.1\|1881203_1882364_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4J8L8	uncultured_Caudovirales_phage	1.2e-92	47.0
WP_002641563.1\|1882402_1882690_-	pyocin activator PrtN family protein	NA	NA	NA	NA
WP_002641562.1\|1882735_1882879_-	hypothetical protein	NA	NA	NA	NA
WP_002641561.1\|1883032_1883554_+	hypothetical protein	A0A0M3LS77	Mannheimia_phage	6.9e-11	32.0
WP_002641560.1\|1883566_1883902_-	hypothetical protein	NA	NA	NA	NA
WP_002641559.1\|1884071_1884734_-	LexA family transcriptional regulator	Q94MM0	Bordetella_phage	7.9e-28	32.1
WP_002641558.1\|1884883_1885072_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002641557.1\|1885068_1885638_+	KilA-N domain-containing protein	Q8SBE6	Shigella_phage	6.2e-21	53.4
WP_002641556.1\|1885740_1888518_+	hypothetical protein	A0A2H4JF22	uncultured_Caudovirales_phage	9.2e-78	33.0
WP_002641555.1\|1888946_1889312_+	sigma-70 region 4 domain-containing protein	NA	NA	NA	NA
WP_002641554.1\|1889430_1889742_+	HNH endonuclease	A0A0R6PHK1	Moraxella_phage	1.8e-22	58.4
WP_002641553.1\|1889906_1890443_+\|terminase	terminase small subunit	A0A2H4J8R0	uncultured_Caudovirales_phage	3.1e-14	36.1
WP_002641552.1\|1890442_1892137_+\|terminase	terminase large subunit	A0A2H4J559	uncultured_Caudovirales_phage	1.4e-185	57.7
WP_104930280.1\|1892154_1893036_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_002641549.1\|1893167_1894391_+\|portal	phage portal protein	Q3HQS8	Burkholderia_phage	2.3e-97	50.8
1893082:1894078	attR	NA	NA	NA	NA
WP_002641548.1\|1894483_1895317_+\|protease	Clp protease ClpP	Q3HQS9	Burkholderia_phage	9.9e-52	46.9
WP_002641547.1\|1895320_1896547_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	7.6e-109	52.1
WP_002641546.1\|1896562_1896829_+	hypothetical protein	Q3HQT1	Burkholderia_phage	1.6e-08	58.3
WP_002641545.1\|1896825_1897134_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_002641544.1\|1897188_1897401_+	hypothetical protein	NA	NA	NA	NA
WP_104930388.1\|1897493_1897907_+	hypothetical protein	NA	NA	NA	NA
WP_002641542.1\|1897969_1898287_+\|head	phage head closure protein	NA	NA	NA	NA
WP_002641541.1\|1898291_1898762_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_002641540.1\|1898754_1899099_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_002641539.1\|1899138_1899780_+\|tail	phage tail protein	A0A0H5BBY3	Pseudomonas_phage	6.0e-41	41.8
WP_002641538.1\|1899795_1900104_+	hypothetical protein	A0A192Y8C0	Enterobacteria_phage	1.7e-09	36.1
WP_040628715.1\|1900181_1900427_+	DUF1799 domain-containing protein	A0A2H4J4F7	uncultured_Caudovirales_phage	1.4e-06	36.6
WP_002641537.1\|1900419_1903869_+\|tail	lambda family phage tail tape measure protein	A0A2H4J7J3	uncultured_Caudovirales_phage	7.2e-48	24.4
WP_002641536.1\|1903872_1904184_+\|tail	phage tail protein	A0A0M3LQW6	Mannheimia_phage	2.9e-09	35.9
WP_002641535.1\|1904186_1904903_+\|tail	phage minor tail protein L	Q9FZU6	Neisseria_meningitidis_phage	5.9e-69	64.8
WP_002641534.1\|1904903_1905653_+	C40 family peptidase	Q9FZU5	Neisseria_meningitidis_phage	1.3e-58	47.1
WP_002641533.1\|1905649_1906012_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002641532.1\|1906056_1906320_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_002641531.1\|1906440_1907160_+\|tail	tail assembly protein	Q9FZU4	Neisseria_meningitidis_phage	4.1e-62	54.3
WP_104930389.1\|1907170_1914391_+	DUF1983 domain-containing protein	Q9FZU3	Neisseria_meningitidis_phage	0.0e+00	64.7
WP_002641527.1\|1914403_1914844_+	hypothetical protein	NA	NA	NA	NA
WP_002641526.1\|1914836_1915535_+	hypothetical protein	NA	NA	NA	NA
WP_002641525.1\|1915607_1915982_+	hypothetical protein	NA	NA	NA	NA
WP_002641524.1\|1916044_1916539_+	hypothetical protein	NA	NA	NA	NA
WP_002641523.1\|1916538_1916868_+	hypothetical protein	NA	NA	NA	NA
WP_002641522.1\|1916921_1917563_+	hypothetical protein	A0A0B5A6N7	Achromobacter_phage	5.0e-19	41.5

DBSCAN-SWA_13

2160958 : 2172363

Stenotrophomonas_phage(16.67%)

tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002641656.1\|2160958_2162653_-	hypothetical protein	B7SYE9	Stenotrophomonas_phage	1.9e-54	28.3
WP_104930400.1\|2162670_2164542_-	hypothetical protein	A0A076G7Z6	Pseudoalteromonas_phage	1.8e-45	28.6
WP_104930358.1\|2164657_2165062_-	hypothetical protein	NA	NA	NA	NA
WP_104930401.1\|2165061_2169135_-\|tail	phage tail tape measure protein	A0A1B2LRQ0	Wolbachia_phage	2.9e-35	32.7
WP_002642874.1\|2169223_2169985_-	hypothetical protein	NA	NA	NA	NA
WP_002642875.1\|2169988_2170450_-	hypothetical protein	NA	NA	NA	NA
WP_002642876.1\|2170449_2170938_-	phage virion morphogenesis protein	R9U1C4	Rhizobium_phage	4.8e-06	28.2
WP_002642877.1\|2170918_2171362_-	DUF1320 domain-containing protein	A0A2D1GNP0	Pseudomonas_phage	4.1e-12	40.7
WP_002642878.1\|2171361_2172363_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	3.2e-33	32.9

DBSCAN-SWA_14

2177903 : 2190370

Pseudomonas_phage(62.5%)

terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104930421.1\|2177903_2179505_-\|terminase	phage terminase large subunit	A0A0M3LQB7	Mannheimia_phage	3.7e-132	47.5
WP_002643134.1\|2179545_2180049_-	DUF1804 family protein	I6PBD1	Pseudomonas_phage	8.3e-38	48.8
WP_002643135.1\|2180057_2180276_-	hypothetical protein	NA	NA	NA	NA
WP_002643136.1\|2180266_2180515_-	hypothetical protein	NA	NA	NA	NA
WP_002642274.1\|2180553_2180865_-	hypothetical protein	NA	NA	NA	NA
WP_155999591.1\|2180861_2181023_-	hypothetical protein	NA	NA	NA	NA
WP_002642272.1\|2181027_2181393_-	hypothetical protein	NA	NA	NA	NA
WP_040629144.1\|2181392_2181596_-	hypothetical protein	NA	NA	NA	NA
WP_002642270.1\|2181765_2182416_-	hypothetical protein	E2GM11	Acinetobacter_phage	1.4e-48	51.3
WP_002642269.1\|2182568_2182778_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_155999587.1\|2182774_2182930_-	hypothetical protein	NA	NA	NA	NA
WP_002642268.1\|2182962_2183205_-	hypothetical protein	NA	NA	NA	NA
WP_002642267.1\|2183344_2183797_-	hypothetical protein	A0A0A7DJP6	Pseudomonas_phage	1.7e-13	31.7
WP_002643141.1\|2183953_2184391_-	regulatory protein GemA	H1ZZD1	Pseudomonas_virus	3.5e-16	39.8
WP_002643142.1\|2184466_2184739_-	HU family DNA-binding protein	NA	NA	NA	NA
WP_104930402.1\|2184765_2184984_-	hypothetical protein	NA	NA	NA	NA
WP_002642264.1\|2184980_2185514_-	hypothetical protein	L7P7I4	Pseudomonas_phage	4.1e-27	41.3
WP_104930289.1\|2185531_2186005_-	hypothetical protein	NA	NA	NA	NA
WP_104930288.1\|2186071_2186542_+	hypothetical protein	NA	NA	NA	NA
WP_002640928.1\|2186611_2186824_-	hypothetical protein	NA	NA	NA	NA
WP_104930419.1\|2186820_2187144_-	hypothetical protein	NA	NA	NA	NA
WP_002640930.1\|2187154_2187424_-	hypothetical protein	NA	NA	NA	NA
WP_002640931.1\|2187420_2188149_-	ATP-binding protein	A0A0A1IVZ3	Pseudomonas_phage	5.8e-56	50.2
WP_002640932.1\|2188255_2190370_-\|transposase	Mu transposase C-terminal domain-containing protein	A0A1C6ZDN4	Pseudomonas_phage	7.4e-112	37.8

Anti-CRISPR protein detection

Acr_ID: NZ_CP019448.1|WP_002642161.1|1665883_1666276_-|anti-CRISPR-protein-AcrIIC5

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Acr_ID: NZ_CP019448.1|WP_002642162.1|1666503_1666920_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP019448.1|WP_002642161.1|1665883_1666276_-|anti-CRISPR-protein-AcrIIC5

1665883_1666276_-

130 aa aa

AcrIIC5

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR0554\|WP_002642161.1\|AcrIIC5\|II-C\|Verified\|Simonsiella-muelleri	1.0	1	1.0

NZ_CP019448.1_1665400_1665829_-

Protein_id	Hit_Aca_id	Identity	Query_coverage	Hit_coverage
NZ_CP019448.1_1665400_1665829_-	WP_002642160.1	1.0	1	1.0

NZ_CP019448.1|WP_002642162.1|1666503_1666920_-|hypothetical-protein

1666503_1666920_-

138 aa aa

NZ_CP019448.1_1665400_1665829_-

Protein_id	Hit_Aca_id	Identity	Query_coverage	Hit_coverage
NZ_CP019448.1_1665400_1665829_-	WP_002642160.1	1.0	1	1.0

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019448

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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Click the colored protein region to show detailed information