CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP027029	Listeria monocytogenes strain Lm16 chromosome	4 crisprs	WYL,casR,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,RT,DEDDh,DinG,csa3	1	34	6	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP027029_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027029_1

343996-344674

Unclear

I-A

Consensus_repeat	Method
GTTTTAGTTACTTATTGTGAAATGTAAAT	PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	CRISPRCasFinder
GTTTTAGTTACTTATTGTGAAATGTAAAT	CRT

10 spacers

cas6,cas8b2

The CRISPR arrays of NZ_CP027029_1

>merge|NZ_CP027029|1|343996-344674|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGTTACTTATTGTGAAATGTAAATAAAGATTCCATCGAATCTAAATAATGATCAAAGTGCGTTTTAGTTACTTATTGTGAAATGTAAATACACAAATATGAAAAAACTTCTATTAAAAGCAATTCCATCCTGTTTTAGTTACTTATTGTGAAATGTAAATAAACCTATCACATTTAAGTATTTAGAGATTCCTAAAGTTTTAGTTACTTATTGTGAAATGTAAATACAGATCAAACTCCGGAAGGGTGATTGTAAATGGCGTTTTAGTTACTTATTGTGAAATGTAAATTGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGCGTTTTAGTTACTTATTGTGAAATGTAAATGCGATTTTTGTCAAAGGGACAGCGATGGGTTACAAGTTTTAGTTACTTATTGTGAAATGTAAATTTTTCTACTCCTGCTTCTAAAATGTCGTTTATAAGTTTTAGTTACTTATTGTGAAATGTAAATACAGATCAAACTCCGGAAGGGTGATTGTAAATGGCGTTTTAGTTACTTATTGTGAAATGTAAATAAAATAGGAGGAAATAAATTATGACTATCAAATTAAGTTTTAGTTACTTATTGTGAAATGTAAATTTTGTTGAATCAACGGATATAGATTTTACAATTTCGTTTTAGTTACTTATTGTGAAATGTAAAT

>NZ_CP027029|1|1|343996-344674|PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	AAAGATTCCATCGAATCTAAATAATGATCAAAGTGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	ACACAAATATGAAAAAACTTCTATTAAAAGCAATTCCATCCT
GTTTTAGTTACTTATTGTGAAATGTAAAT	AAACCTATCACATTTAAGTATTTAGAGATTCCTAAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	ACAGATCAAACTCCGGAAGGGTGATTGTAAATGGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	ACAGATCAAACTCCGGAAGGGTGATTGTAAATGGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	AAAATAGGAGGAAATAAATTATGACTATCAAATTAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTGTTGAATCAACGGATATAGATTTTACAATTTC
GTTTTAGTTACTTATTGTGAAATGTAAAT

>NZ_CP027029|1|1|343996-344674|CRISPRCasFinder
GTTTTAGTTACTTATTGTGAAATGTAAAT	AAAGATTCCATCGAATCTAAATAATGATCAAAGTGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	ACACAAATATGAAAAAACTTCTATTAAAAGCAATTCCATCCT
GTTTTAGTTACTTATTGTGAAATGTAAAT	AAACCTATCACATTTAAGTATTTAGAGATTCCTAAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	ACAGATCAAACTCCGGAAGGGTGATTGTAAATGGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	ACAGATCAAACTCCGGAAGGGTGATTGTAAATGGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	AAAATAGGAGGAAATAAATTATGACTATCAAATTAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTGTTGAATCAACGGATATAGATTTTACAATTTC
GTTTTAGTTACTTATTGTGAAATGTAAAT

>NZ_CP027029|1|1|343996-344674|CRT
GTTTTAGTTACTTATTGTGAAATGTAAAT	AAAGATTCCATCGAATCTAAATAATGATCAAAGTGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	ACACAAATATGAAAAAACTTCTATTAAAAGCAATTCCATCCT
GTTTTAGTTACTTATTGTGAAATGTAAAT	AAACCTATCACATTTAAGTATTTAGAGATTCCTAAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	ACAGATCAAACTCCGGAAGGGTGATTGTAAATGGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	ACAGATCAAACTCCGGAAGGGTGATTGTAAATGGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	AAAATAGGAGGAAATAAATTATGACTATCAAATTAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTGTTGAATCAACGGATATAGATTTTACAATTTC
GTTTTAGTTACTTATTGTGAAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027029.1\|WP_003730559.1\|340041_341088_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_CP027029.1\|WP_012951250.1\|347661_349497_+\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NZ_CP027029.1\|WP_003721297.1\|345750_346431_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_CP027029.1\|WP_003733187.1\|346821_347280_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_CP027029.1\|WP_014600551.1\|350075_351506_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_CP027029.1\|WP_012951247.1\|345065_345644_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027029.1\|WP_003721303.1\|351626_352442_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP027029.1\|WP_003721301.1\|349597_350029_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP027029.1\|WP_003727301.1\|341103_341397_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_CP027029.1\|WP_003733191.1\|338501_338969_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_CP027029.1\|WP_010989497.1\|335048_335699_+\|transaldolase	unknown	unknown	gnl\|CDD\|223254
NZ_CP027029.1\|WP_003733193.1\|335807_337868_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP027029.1\|WP_003721294.1\|341411_342683_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_CP027029.1\|WP_014601718.1\|346455_346815_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131113
NZ_CP027029.1\|WP_014601719.1\|352794_353517_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP027029.1\|WP_014601720.1\|353532_355221_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NZ_CP027029.1\|WP_014601716.1\|339394_340045_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_CP027029.1\|WP_003721295.1\|342822_343758_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP027029.1\|WP_003733192.1\|337871_338474_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
NZ_CP027029.1\|WP_003721290.1\|338985_339384_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP027029.1\|WP_003730559.1\|340041_341088_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
NZ_CP027029.1\|WP_012951250.1\|347661_349497_+\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	8.58129e-120
NZ_CP027029.1\|WP_003733187.1\|346821_347280_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	1.03599e-12
NZ_CP027029.1\|WP_014600551.1\|350075_351506_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	9.64038e-100
NZ_CP027029.1\|WP_003733191.1\|338501_338969_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	2.76446e-37
NZ_CP027029.1\|WP_003721301.1\|349597_350029_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NZ_CP027029.1\|WP_003727301.1\|341103_341397_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.39912e-27
NZ_CP027029.1\|WP_003721297.1\|345750_346431_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	7.71833e-60
NZ_CP027029.1\|WP_010989497.1\|335048_335699_+\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	5.85703e-62
NZ_CP027029.1\|WP_003733193.1\|335807_337868_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	3.95572e-80
NZ_CP027029.1\|WP_003721294.1\|341411_342683_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
NZ_CP027029.1\|WP_014601718.1\|346455_346815_-\|hypothetical-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	4.36834e-66
NZ_CP027029.1\|WP_014601719.1\|352794_353517_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	5.90561e-33
NZ_CP027029.1\|WP_014601720.1\|353532_355221_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	6.06959e-26
NZ_CP027029.1\|WP_003721303.1\|351626_352442_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NZ_CP027029.1\|WP_014601716.1\|339394_340045_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	5.38202e-108
NZ_CP027029.1\|WP_003721295.1\|342822_343758_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	2.38027e-153
NZ_CP027029.1\|WP_003733192.1\|337871_338474_+\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	1.15952e-75

>NZ_CP027029.1|WP_003721295.1|342822_343758_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSSIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NZ_CP027029.1|WP_003721294.1|341411_342683_+|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>NZ_CP027029.1|WP_003727301.1|341103_341397_+|PTS-sugar-transporter-subunit-IIB
MKKKKIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>NZ_CP027029.1|WP_003730559.1|340041_341088_+|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEQPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>NZ_CP027029.1|WP_014601716.1|339394_340045_+|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNAELAKECTLAGADLIVVGSYLFEGDIEANLEKLSKGVLTE
>NZ_CP027029.1|WP_003721290.1|338985_339384_+|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>NZ_CP027029.1|WP_003733191.1|338501_338969_+|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQNKEKLLAEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>NZ_CP027029.1|WP_003733192.1|337871_338474_+|SIS-domain-containing-protein
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>NZ_CP027029.1|WP_003733193.1|335807_337868_+|BglG-family-transcription-antiterminator
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKDPNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>NZ_CP027029.1|WP_010989497.1|335048_335699_+|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRILELTDKQVFVQTVGFTYEEILADARMLLTMFGKDKIAIKIPAHEAGTNVIDTLKKEDKTIQILGTAIYSADQAITAALAGADFVAPYVNRMSAANIDPFKEITQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK
>NZ_CP027029.1|WP_012951247.1|345065_345644_+|hypothetical-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTNTIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>NZ_CP027029.1|WP_003721297.1|345750_346431_+|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLFFPESLNVFHWHQDTFALPTGSTRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
>NZ_CP027029.1|WP_014601718.1|346455_346815_-|hypothetical-protein
MEQILFIQTGFGVDVHGQNITNAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>NZ_CP027029.1|WP_003733187.1|346821_347280_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTAAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NZ_CP027029.1|WP_012951250.1|347661_349497_+|lmo0514-family-class-1-internalin
MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSISGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSSRLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVDPVPPTPEIKPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>NZ_CP027029.1|WP_003721301.1|349597_350029_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_CP027029.1|WP_014600551.1|350075_351506_-|CapA-family-protein
MKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_CP027029.1|WP_003721303.1|351626_352442_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_CP027029.1|WP_014601719.1|352794_353517_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIIPKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKGAEIQLNEANCIINFSTGDAETGIIFYNALISLRGSKVLFGAGNHITVKNIQIVPEKKIIGKQTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLIDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGIGTMTGSGFGMIEQF
>NZ_CP027029.1|WP_014601720.1|353532_355221_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MQTEIEVRADDWLINTGLTGFLNIVGKENVRIDGQSIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLFKQTKFIDPYLDYKTTFVDPVLEYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK

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Crispr_ID: NZ_CP027029_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027029_2

361100-364902

Unclear

I-A

Consensus_repeat	Method
GTTTTAACTACTTATTATGAAATGTAAAT	PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	CRT

58 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NZ_CP027029_2

>merge|NZ_CP027029|2|361100-364902|PILER-CR,CRISPRCasFinder,CRT
GTTTTAACTACTTATTATGAAATGTAAATCTGTTTTTTTTGCATCCTCTTTTTCATCTACTGCGTGTTTTAACTACTTATTATGAAATGTAAATAGTTTTAGAAGTATGTTAGACGTTGACGAAAATCGTTTTAACTACTTATTATGAAATGTAAATTCAAGCTGGTATGCACTTTTTGAGGTAAGCTATTGGTTTTAACTACTTATTATGAAATGTAAATGAAAAAGAACCAGTTAAAGAACCCGTGAAAGAAGAACGTTTTAACTACTTATTATGAAATGTAAATAAAGAAAACTTGCAGCAGAATGACGCAAATCATGAAGTTTTAACTACTTATTATGAAATGTAAATAGAAATTCTCATGGCGCTAATAACCCCATGCCAGACGAGTTTTAACTACTTATTATGAAATGTAAATCATTTCAATCACTTCTTTTGATGTAACATTAAGCGTTTTAACTACTTATTATGAAATGTAAATTGTAACTGCAAACGTCTTTCCGCAAATTCGTGTAGTGTTTTAACTACTTATTATGAAATGTAAATTTATCCATTCCGTCATATCCCCACGCATCTGTTCCAGTTTTAACTACTTATTATGAAATGTAAATAGAGTTTCCAGCTGTAAGGCCAGATATTGATAATTTCGTTTTAACTACTTATTATGAAATGTAAATTATGAAATTATCTGCGAAGAGGGAAAACTAGACGATGTTTTAACTACTTATTATGAAATGTAAATAGCGGTTTTTCTTCTATAGAAGTAACTTGCTTTTGTGTTTTAACTACTTATTATGAAATGTAAATTAAATTGTTAAGCTTGTCAACAACCTGCAAGAACTGTTTTAACTACTTATTATGAAATGTAAATGTTTCCAGTTTCTTCTATATAAACAACAAAAATAAAAGTTTTAACTACTTATTATGAAATGTAAATACGAAAATAGCTAAATTGGATTTACTTGAGTCTTTTTTCGTTTTAACTACTTATTATGAAATGTAAATCAAAGCAAGTACAGAAGCGTATTATGCTCTATTAGAGTGTTTTAACTACTTATTATGAAATGTAAATATTTAAGTATTAATGTTTTTAAAAAGTTTGATTTATTGTTTTAACTACTTATTATGAAATGTAAATTATCAAAAAGCTTGTGCTATTATGGAAAGTCGTTGGGAGTTTTAACTACTTATTATGAAATGTAAATTTTAATAACTATGACAGTGAATTTAAAACGAAAGCGGTTTTAACTACTTATTATGAAATGTAAATTCTGGAGAATCTGATGTTAAAATCTCTGATCATGTTGTGTTTTAACTACTTATTATGAAATGTAAATAGAAATTAAAGAAGGTAGGGCATTCGTTGCACCGGAAAGTTTTAACTACTTATTATGAAATGTAAATAAAATTAGCGTTCCAAAAATAAGACCTGTCGCAACGTTTTAACTACTTATTATGAAATGTAAATATACTAAAACTTCGCTCATTTTCCGCAACTCCTTGTTTTAACTACTTATTATGAAATGTAAATTTAAGAAATATGATTGATTCTCTGGATATCACTTTGTTTTAACTACTTATTATGAAATGTAAATCCTCCACAATCACTCGGCTTTCTTCGTCTTTATCGACGTTTTAACTACTTATTATGAAATGTAAATATTTAACAAATCAGCTAAATCAGCGCGACTCTGATAGTTTTAACTACTTATTATGAAATGTAAATGTCGCTAGAGCTAAAAAATGGATAGAGGAACAACAAGGTTTTAACTACTTATTATGAAATGTAAATTCAACTAATATTAATATCTCTTGTGGATTGGCCATTGTTTTAACTACTTATTATGAAATGTAAATACTTGAAGGACGTGCTTCAAAATATTTAGTTGCATGTTTTAACTACTTATTATGAAATGTAAATTCTGTTGTAACTGTTGTGCCTTCCACAGCGTGCACTTGTTTTAACTACTTATTATGAAATGTAAATACATTTTGCACGCACCAAGCTTGACGGTCTGAAACGTTTTAACTACTTATTATGAAATGTAAATTTTATCTTTATCTATTTCTCCAGTAATAGAGCACGGTTTTAACTACTTATTATGAAATGTAAATACATTTTTATCTGAGAAAGGGTTTAGGGAAAATTGTTTTAACTACTTATTATGAAATGTAAATAAAAAAACAACTGCGCAAGAAGGGTATGAGCAATTGTTTTAACTACTTATTATGAAATGTAAATGTTGGACACCGTCAGCAGAGCTTATAAATCCACTGTGTTTTAACTACTTATTATGAAATGTAAATTTTTTCCATTCTTCTCGCCGATGTATTCCTTTTCTCGTTTTAACTACTTATTATGAAATGTAAATAACAAAAATACGTTATTTGTTCGATGTAATGTAAAAGTTTTAACTACTTATTATGAAATGTAAATTCAACTAACGAGGCAACAGGTGTTTTATAGCTGTAAAGGTTTTAACTACTTATTATGAAATGTAAATTGGTAAATTTTATAGGAATGTCAACACCTTGAATTTGTTTTAACTACTTATTATGAAATGTAAATCCAGAAATGGAGTGCGCGGTTGATTTTGGATTTAGCGTTTTAACTACTTATTATGAAATGTAAATAAGAACATTAGATGAACTTAAAGCGTCTGTTGAACAAGTTTTAACTACTTATTATGAAATGTAAATAAACCAGAGCCAGAAAAAGAAGTTGTGAAAGAAGAGTTTTAACTACTTATTATGAAATGTAAATACGTCACTTGTTTTTGCCTTTGTTTTCGCCCTTTCCTGTTTTAACTACTTATTATGAAATGTAAATGTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATTGTTTTAACTACTTATTATGAAATGTAAATTTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACGGTTTTAACTACTTATTATGAAATGTAAATAACAGTATCATCACGTTGTTATTGCTGTCACCTGTGTTTTAACTACTTATTATGAAATGTAAATTAACCAAGCATTGCCAAAAACTCGTCTGTTGATAATGTTTTAACTACTTATTATGAAATGTAAATTTCTATTGCAGAACAGAATGAATTGTATGCACAAGGGTTTTAACTACTTATTATGAAATGTAAATTCGTTAATCATAATTGATGAAAGTCATCATGTGTTAGGTTTTAACTACTTATTATGAAATGTAAATACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATTGTTTTAACTACTTATTATGAAATGTAAATTTTATCACTCCTATGCTTTTCTTATTTCTGTAAATGTTTTAACTACTTATTATGAAATGTAAATGCTTTTTTCAACAATTTTATCACCAGATGTCATTAGTTTTAACTACTTATTATGAAATGTAAATTGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTCGTTTTAACTACTTATTATGAAATGTAAATTTAATAAATCCGATGGTGATGCCTATGTTATACGTCGTTTTAACTACTTATTATGAAATGTAAATTAAAACATCGCTTCGTTATACAATGTCTTTTTATAGTTTTAACTACTTATTATGAAATGTAAATTGTTATCTCCTGTGATGTAAAATAACCCTTCTATCGTTTTAACTACTTATTATGAAATGTAAATCAAAACAGAGAACGCGTGTTCATTATCGGACATCTTAGTTTTAACTACTTATTATGAAATGTAAATTTTTGAAATATGAGGACTTAGAAAATGAAAAAAATGTTTTAACTACTTATTATGAAATCATAAA

>NZ_CP027029|2|2|361100-364838|PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	CTGTTTTTTTTGCATCCTCTTTTTCATCTACTGCGT
GTTTTAACTACTTATTATGAAATGTAAAT	AGTTTTAGAAGTATGTTAGACGTTGACGAAAATC
GTTTTAACTACTTATTATGAAATGTAAAT	TCAAGCTGGTATGCACTTTTTGAGGTAAGCTATTG
GTTTTAACTACTTATTATGAAATGTAAAT	GAAAAAGAACCAGTTAAAGAACCCGTGAAAGAAGAAC
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGAAAACTTGCAGCAGAATGACGCAAATCATGAA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAATTCTCATGGCGCTAATAACCCCATGCCAGACGA
GTTTTAACTACTTATTATGAAATGTAAAT	CATTTCAATCACTTCTTTTGATGTAACATTAAGC
GTTTTAACTACTTATTATGAAATGTAAAT	TGTAACTGCAAACGTCTTTCCGCAAATTCGTGTAGT
GTTTTAACTACTTATTATGAAATGTAAAT	TTATCCATTCCGTCATATCCCCACGCATCTGTTCCA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAGTTTCCAGCTGTAAGGCCAGATATTGATAATTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TATGAAATTATCTGCGAAGAGGGAAAACTAGACGAT
GTTTTAACTACTTATTATGAAATGTAAAT	AGCGGTTTTTCTTCTATAGAAGTAACTTGCTTTTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TAAATTGTTAAGCTTGTCAACAACCTGCAAGAACT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTTCCAGTTTCTTCTATATAAACAACAAAAATAAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGAAAATAGCTAAATTGGATTTACTTGAGTCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAGCAAGTACAGAAGCGTATTATGCTCTATTAGAGT
GTTTTAACTACTTATTATGAAATGTAAAT	ATTTAAGTATTAATGTTTTTAAAAAGTTTGATTTATT
GTTTTAACTACTTATTATGAAATGTAAAT	TATCAAAAAGCTTGTGCTATTATGGAAAGTCGTTGGGA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTAATAACTATGACAGTGAATTTAAAACGAAAGCG
GTTTTAACTACTTATTATGAAATGTAAAT	TCTGGAGAATCTGATGTTAAAATCTCTGATCATGTTGT
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAATTAAAGAAGGTAGGGCATTCGTTGCACCGGAAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAAATTAGCGTTCCAAAAATAAGACCTGTCGCAAC
GTTTTAACTACTTATTATGAAATGTAAAT	ATACTAAAACTTCGCTCATTTTCCGCAACTCCTT
GTTTTAACTACTTATTATGAAATGTAAAT	TTAAGAAATATGATTGATTCTCTGGATATCACTTT
GTTTTAACTACTTATTATGAAATGTAAAT	CCTCCACAATCACTCGGCTTTCTTCGTCTTTATCGAC
GTTTTAACTACTTATTATGAAATGTAAAT	ATTTAACAAATCAGCTAAATCAGCGCGACTCTGATA
GTTTTAACTACTTATTATGAAATGTAAAT	GTCGCTAGAGCTAAAAAATGGATAGAGGAACAACAAG
GTTTTAACTACTTATTATGAAATGTAAAT	TCAACTAATATTAATATCTCTTGTGGATTGGCCATT
GTTTTAACTACTTATTATGAAATGTAAAT	ACTTGAAGGACGTGCTTCAAAATATTTAGTTGCAT
GTTTTAACTACTTATTATGAAATGTAAAT	TCTGTTGTAACTGTTGTGCCTTCCACAGCGTGCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	ACATTTTGCACGCACCAAGCTTGACGGTCTGAAAC
GTTTTAACTACTTATTATGAAATGTAAAT	TTTATCTTTATCTATTTCTCCAGTAATAGAGCACG
GTTTTAACTACTTATTATGAAATGTAAAT	ACATTTTTATCTGAGAAAGGGTTTAGGGAAAATT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAAAACAACTGCGCAAGAAGGGTATGAGCAATT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTGGACACCGTCAGCAGAGCTTATAAATCCACTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTCCATTCTTCTCGCCGATGTATTCCTTTTCTC
GTTTTAACTACTTATTATGAAATGTAAAT	AACAAAAATACGTTATTTGTTCGATGTAATGTAAAA
GTTTTAACTACTTATTATGAAATGTAAAT	TCAACTAACGAGGCAACAGGTGTTTTATAGCTGTAAAG
GTTTTAACTACTTATTATGAAATGTAAAT	TGGTAAATTTTATAGGAATGTCAACACCTTGAATTT
GTTTTAACTACTTATTATGAAATGTAAAT	CCAGAAATGGAGTGCGCGGTTGATTTTGGATTTAGC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAACATTAGATGAACTTAAAGCGTCTGTTGAACAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAACCAGAGCCAGAAAAAGAAGTTGTGAAAGAAGA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTCACTTGTTTTTGCCTTTGTTTTCGCCCTTTCCT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG
GTTTTAACTACTTATTATGAAATGTAAAT	AACAGTATCATCACGTTGTTATTGCTGTCACCTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG
GTTTTAACTACTTATTATGAAATGTAAAT	TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTAATAAATCCGATGGTGATGCCTATGTTATACGTC
GTTTTAACTACTTATTATGAAATGTAAAT	TAAAACATCGCTTCGTTATACAATGTCTTTTTATA
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT

>NZ_CP027029|2|2|361100-364902|CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	CTGTTTTTTTTGCATCCTCTTTTTCATCTACTGCGT
GTTTTAACTACTTATTATGAAATGTAAAT	AGTTTTAGAAGTATGTTAGACGTTGACGAAAATC
GTTTTAACTACTTATTATGAAATGTAAAT	TCAAGCTGGTATGCACTTTTTGAGGTAAGCTATTG
GTTTTAACTACTTATTATGAAATGTAAAT	GAAAAAGAACCAGTTAAAGAACCCGTGAAAGAAGAAC
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGAAAACTTGCAGCAGAATGACGCAAATCATGAA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAATTCTCATGGCGCTAATAACCCCATGCCAGACGA
GTTTTAACTACTTATTATGAAATGTAAAT	CATTTCAATCACTTCTTTTGATGTAACATTAAGC
GTTTTAACTACTTATTATGAAATGTAAAT	TGTAACTGCAAACGTCTTTCCGCAAATTCGTGTAGT
GTTTTAACTACTTATTATGAAATGTAAAT	TTATCCATTCCGTCATATCCCCACGCATCTGTTCCA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAGTTTCCAGCTGTAAGGCCAGATATTGATAATTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TATGAAATTATCTGCGAAGAGGGAAAACTAGACGAT
GTTTTAACTACTTATTATGAAATGTAAAT	AGCGGTTTTTCTTCTATAGAAGTAACTTGCTTTTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TAAATTGTTAAGCTTGTCAACAACCTGCAAGAACT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTTCCAGTTTCTTCTATATAAACAACAAAAATAAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGAAAATAGCTAAATTGGATTTACTTGAGTCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAGCAAGTACAGAAGCGTATTATGCTCTATTAGAGT
GTTTTAACTACTTATTATGAAATGTAAAT	ATTTAAGTATTAATGTTTTTAAAAAGTTTGATTTATT
GTTTTAACTACTTATTATGAAATGTAAAT	TATCAAAAAGCTTGTGCTATTATGGAAAGTCGTTGGGA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTAATAACTATGACAGTGAATTTAAAACGAAAGCG
GTTTTAACTACTTATTATGAAATGTAAAT	TCTGGAGAATCTGATGTTAAAATCTCTGATCATGTTGT
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAATTAAAGAAGGTAGGGCATTCGTTGCACCGGAAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAAATTAGCGTTCCAAAAATAAGACCTGTCGCAAC
GTTTTAACTACTTATTATGAAATGTAAAT	ATACTAAAACTTCGCTCATTTTCCGCAACTCCTT
GTTTTAACTACTTATTATGAAATGTAAAT	TTAAGAAATATGATTGATTCTCTGGATATCACTTT
GTTTTAACTACTTATTATGAAATGTAAAT	CCTCCACAATCACTCGGCTTTCTTCGTCTTTATCGAC
GTTTTAACTACTTATTATGAAATGTAAAT	ATTTAACAAATCAGCTAAATCAGCGCGACTCTGATA
GTTTTAACTACTTATTATGAAATGTAAAT	GTCGCTAGAGCTAAAAAATGGATAGAGGAACAACAAG
GTTTTAACTACTTATTATGAAATGTAAAT	TCAACTAATATTAATATCTCTTGTGGATTGGCCATT
GTTTTAACTACTTATTATGAAATGTAAAT	ACTTGAAGGACGTGCTTCAAAATATTTAGTTGCAT
GTTTTAACTACTTATTATGAAATGTAAAT	TCTGTTGTAACTGTTGTGCCTTCCACAGCGTGCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	ACATTTTGCACGCACCAAGCTTGACGGTCTGAAAC
GTTTTAACTACTTATTATGAAATGTAAAT	TTTATCTTTATCTATTTCTCCAGTAATAGAGCACG
GTTTTAACTACTTATTATGAAATGTAAAT	ACATTTTTATCTGAGAAAGGGTTTAGGGAAAATT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAAAACAACTGCGCAAGAAGGGTATGAGCAATT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTGGACACCGTCAGCAGAGCTTATAAATCCACTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTCCATTCTTCTCGCCGATGTATTCCTTTTCTC
GTTTTAACTACTTATTATGAAATGTAAAT	AACAAAAATACGTTATTTGTTCGATGTAATGTAAAA
GTTTTAACTACTTATTATGAAATGTAAAT	TCAACTAACGAGGCAACAGGTGTTTTATAGCTGTAAAG
GTTTTAACTACTTATTATGAAATGTAAAT	TGGTAAATTTTATAGGAATGTCAACACCTTGAATTT
GTTTTAACTACTTATTATGAAATGTAAAT	CCAGAAATGGAGTGCGCGGTTGATTTTGGATTTAGC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAACATTAGATGAACTTAAAGCGTCTGTTGAACAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAACCAGAGCCAGAAAAAGAAGTTGTGAAAGAAGA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTCACTTGTTTTTGCCTTTGTTTTCGCCCTTTCCT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG
GTTTTAACTACTTATTATGAAATGTAAAT	AACAGTATCATCACGTTGTTATTGCTGTCACCTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG
GTTTTAACTACTTATTATGAAATGTAAAT	TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTAATAAATCCGATGGTGATGCCTATGTTATACGTC
GTTTTAACTACTTATTATGAAATGTAAAT	TAAAACATCGCTTCGTTATACAATGTCTTTTTATA
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATCATAAA

>NZ_CP027029|2|2|361100-364902|CRT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGTTTTTTTTGCATCCTCTTTTTCATCTACTGCGT
GTTTTAACTACTTATTATGAAATGTAAAT	AGTTTTAGAAGTATGTTAGACGTTGACGAAAATC
GTTTTAACTACTTATTATGAAATGTAAAT	TCAAGCTGGTATGCACTTTTTGAGGTAAGCTATTG
GTTTTAACTACTTATTATGAAATGTAAAT	GAAAAAGAACCAGTTAAAGAACCCGTGAAAGAAGAAC
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGAAAACTTGCAGCAGAATGACGCAAATCATGAA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAATTCTCATGGCGCTAATAACCCCATGCCAGACGA
GTTTTAACTACTTATTATGAAATGTAAAT	CATTTCAATCACTTCTTTTGATGTAACATTAAGC
GTTTTAACTACTTATTATGAAATGTAAAT	TGTAACTGCAAACGTCTTTCCGCAAATTCGTGTAGT
GTTTTAACTACTTATTATGAAATGTAAAT	TTATCCATTCCGTCATATCCCCACGCATCTGTTCCA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAGTTTCCAGCTGTAAGGCCAGATATTGATAATTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TATGAAATTATCTGCGAAGAGGGAAAACTAGACGAT
GTTTTAACTACTTATTATGAAATGTAAAT	AGCGGTTTTTCTTCTATAGAAGTAACTTGCTTTTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TAAATTGTTAAGCTTGTCAACAACCTGCAAGAACT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTTCCAGTTTCTTCTATATAAACAACAAAAATAAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGAAAATAGCTAAATTGGATTTACTTGAGTCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAGCAAGTACAGAAGCGTATTATGCTCTATTAGAGT
GTTTTAACTACTTATTATGAAATGTAAAT	ATTTAAGTATTAATGTTTTTAAAAAGTTTGATTTATT
GTTTTAACTACTTATTATGAAATGTAAAT	TATCAAAAAGCTTGTGCTATTATGGAAAGTCGTTGGGA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTAATAACTATGACAGTGAATTTAAAACGAAAGCG
GTTTTAACTACTTATTATGAAATGTAAAT	TCTGGAGAATCTGATGTTAAAATCTCTGATCATGTTGT
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAATTAAAGAAGGTAGGGCATTCGTTGCACCGGAAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAAATTAGCGTTCCAAAAATAAGACCTGTCGCAAC
GTTTTAACTACTTATTATGAAATGTAAAT	ATACTAAAACTTCGCTCATTTTCCGCAACTCCTT
GTTTTAACTACTTATTATGAAATGTAAAT	TTAAGAAATATGATTGATTCTCTGGATATCACTTT
GTTTTAACTACTTATTATGAAATGTAAAT	CCTCCACAATCACTCGGCTTTCTTCGTCTTTATCGAC
GTTTTAACTACTTATTATGAAATGTAAAT	ATTTAACAAATCAGCTAAATCAGCGCGACTCTGATA
GTTTTAACTACTTATTATGAAATGTAAAT	GTCGCTAGAGCTAAAAAATGGATAGAGGAACAACAAG
GTTTTAACTACTTATTATGAAATGTAAAT	TCAACTAATATTAATATCTCTTGTGGATTGGCCATT
GTTTTAACTACTTATTATGAAATGTAAAT	ACTTGAAGGACGTGCTTCAAAATATTTAGTTGCAT
GTTTTAACTACTTATTATGAAATGTAAAT	TCTGTTGTAACTGTTGTGCCTTCCACAGCGTGCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	ACATTTTGCACGCACCAAGCTTGACGGTCTGAAAC
GTTTTAACTACTTATTATGAAATGTAAAT	TTTATCTTTATCTATTTCTCCAGTAATAGAGCACG
GTTTTAACTACTTATTATGAAATGTAAAT	ACATTTTTATCTGAGAAAGGGTTTAGGGAAAATT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAAAACAACTGCGCAAGAAGGGTATGAGCAATT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTGGACACCGTCAGCAGAGCTTATAAATCCACTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTCCATTCTTCTCGCCGATGTATTCCTTTTCTC
GTTTTAACTACTTATTATGAAATGTAAAT	AACAAAAATACGTTATTTGTTCGATGTAATGTAAAA
GTTTTAACTACTTATTATGAAATGTAAAT	TCAACTAACGAGGCAACAGGTGTTTTATAGCTGTAAAG
GTTTTAACTACTTATTATGAAATGTAAAT	TGGTAAATTTTATAGGAATGTCAACACCTTGAATTT
GTTTTAACTACTTATTATGAAATGTAAAT	CCAGAAATGGAGTGCGCGGTTGATTTTGGATTTAGC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAACATTAGATGAACTTAAAGCGTCTGTTGAACAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAACCAGAGCCAGAAAAAGAAGTTGTGAAAGAAGA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTCACTTGTTTTTGCCTTTGTTTTCGCCCTTTCCT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG
GTTTTAACTACTTATTATGAAATGTAAAT	AACAGTATCATCACGTTGTTATTGCTGTCACCTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG
GTTTTAACTACTTATTATGAAATGTAAAT	TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTAATAAATCCGATGGTGATGCCTATGTTATACGTC
GTTTTAACTACTTATTATGAAATGTAAAT	TAAAACATCGCTTCGTTATACAATGTCTTTTTATA
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATCATAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027029.1\|WP_014600555.1\|370449_370893_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027029.1\|WP_014600551.1\|350075_351506_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_CP027029.1\|WP_014601725.1\|364974_365343_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NZ_CP027029.1\|WP_023552588.1\|356057_356840_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NZ_CP027029.1\|WP_003726690.1\|369590_370343_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP027029.1\|WP_014601722.1\|356907_359115_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP027029.1\|WP_014601727.1\|372856_374188_+\|DUF1254-domain-containing-protein	unknown	unknown	gnl\|CDD\|227659
NZ_CP027029.1\|WP_003721303.1\|351626_352442_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP027029.1\|WP_003721321.1\|375202_376678_+\|membrane-protein	unknown	unknown	unknown
NZ_CP027029.1\|WP_009925355.1\|359128_359617_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP027029.1\|WP_003721320.1\|374232_374973_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP027029.1\|WP_014601726.1\|365489_366905_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP027029.1\|WP_045131588.1\|367036_368041_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CP027029.1\|WP_014601720.1\|353532_355221_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NZ_CP027029.1\|WP_003721310.1\|360623_360902_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP027029.1\|WP_003721318.1\|370938_372600_-\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_CP027029.1\|WP_014601719.1\|352794_353517_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP027029.1\|WP_003721306.1\|355210_356080_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NZ_CP027029.1\|WP_039120417.1\|359629_360619_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_CP027029.1\|WP_003721315.1\|368072_369389_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432

Protein	Function_ID	Function_description	E-value
NZ_CP027029.1\|WP_014600551.1\|350075_351506_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	9.64038e-100
NZ_CP027029.1\|WP_014601725.1\|364974_365343_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	2.99459e-41
NZ_CP027029.1\|WP_023552588.1\|356057_356840_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	5.69797e-24
NZ_CP027029.1\|WP_003726690.1\|369590_370343_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	7.01666e-64
NZ_CP027029.1\|WP_014601722.1\|356907_359115_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.12962e-61
NZ_CP027029.1\|WP_014601727.1\|372856_374188_+\|DUF1254-domain-containing-protein	gnl\|CDD\|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	7.16875e-73
NZ_CP027029.1\|WP_003721303.1\|351626_352442_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NZ_CP027029.1\|WP_009925355.1\|359128_359617_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.69311e-59
NZ_CP027029.1\|WP_003721320.1\|374232_374973_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	2.56491e-51
NZ_CP027029.1\|WP_014601726.1\|365489_366905_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	6.5582e-81
NZ_CP027029.1\|WP_045131588.1\|367036_368041_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.15304e-20
NZ_CP027029.1\|WP_014601720.1\|353532_355221_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	6.06959e-26
NZ_CP027029.1\|WP_003721310.1\|360623_360902_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.1393e-30
NZ_CP027029.1\|WP_003721318.1\|370938_372600_-\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	3.54266e-147
NZ_CP027029.1\|WP_014601719.1\|352794_353517_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	5.90561e-33
NZ_CP027029.1\|WP_003721306.1\|355210_356080_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.33672e-55
NZ_CP027029.1\|WP_039120417.1\|359629_360619_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	1.03751e-163
NZ_CP027029.1\|WP_003721315.1\|368072_369389_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0

>NZ_CP027029.1|WP_003721310.1|360623_360902_+|CRISPR-associated-endonuclease-Cas2
MYVILIYDISIENGGAKVWRNVFKICKKYLTHVQKSVFEGEITPALLVKLRMELDKYIRDDQDSVIVFSSRQQRWLEKEFWGLTDEKTSNFF
>NZ_CP027029.1|WP_039120417.1|359629_360619_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MESYYLFSDGELKRKDNVIRLTAPDGRFKDLKVELTRDIFLFGEVTMNTKGLNYIGQLGIPVHIFNYYGFYSGSYYPRETNVSGQLLISQVEHYTDTEKRQLIACQFIEAASFNLLRNLKYYKQRGKDVSNEIDEIKFLRKSICKMNDIPSLMGIEGNIRKVYYEAWQKIINQKIDFEKRVKRPPDNMVNTLISYVNSLVYSSCLTEIYKTQLNPVISYLHSAGERRFSLCLDVAEIFKPLIADRIIFSLLNKNIITEDDFEKEANFCYMKKAARQKVLQAYDLRMKETIKHRDLGRNVSYRHLIRLECYKLVKHLMNDKEYEAFKIWW
>NZ_CP027029.1|WP_009925355.1|359128_359617_+|CRISPR-associated-protein-Cas4
MRISGTHVYYYFVCKRKLWCFSKEIRMEHLDENVQLGKLLDESSYNREKGQVMIDETVNIDFIKDWKVLHEVKKSKAIEEAGIWQLKYYMYFLKQKGIIIEKGVVDYPKLRQRETIFLTTEDERKIEKILVDIEITTSSLKPPTIIDKPLCKKCAYYEYCYI
>NZ_CP027029.1|WP_014601722.1|356907_359115_+|CRISPR-associated-helicase/endonuclease-Cas3
MQKYLAKSNPEETIQEHTDNLLKNYQRLKKLYPAVEIDWYLLELVCLLHDLGKMNLLFQTKLGNASGKGKEIPHGYLSVAFVPDSKLEEMGYSEDEIKVVYQAIARHHERKYDFSDSEWKKEIIKLEEQWAGFIYSQLGENAEYSSEVEMLYFYPGSRIFEGNSAADAETFKKYVLLKGLLNRIDFAASGGIDVELENDFLMDSMEVQLAHFKAENPEADWNALQKYMMQHQNENIVVIAETGMGKTEAGLLWLGNNKGFFTLPLRAAINAIYERITKNIVTTNQAERVGLLHSETYSQYLLHEGNAEMDIDEYYTRTRQMSLPITICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSSDLLAYLILGLSYIDKFGGKFCIMTATLPGIVTDLLLENGVDFVQPEDKFVSSRIRHSMEMVHTEIESEFIKPFFNNNRILVICNTISKAKKIYSELKEHFQGEEIHLIHSQFIKKDRSAKEDAIFKDGQKDSTKKCIWVATQVVEASLDIDFDLLFTELSDVNGLFQRMGRCYRNRALDVDTNVYVFDGGAKVCSGIGTFIDKLIFENSKTILNEHAGVLTEEKKMELVERVYSTEALRGSEFYNDLRKTINYVKAFDSYELDKADVRRRFRNINSVSVIPEEVWQDNVEEINSYFAILRKTSKEISTKEKMIARTNLAEFMVSIPDYLYKKGESVVREINRYESVIEFKCGYSDEIGIIMYEKQEDLFF
>NZ_CP027029.1|WP_023552588.1|356057_356840_+|type-I-B-CRISPR-associated-protein-Cas5
MLIMKAIRVRLWQDLVNFKKPTSFQLKETYPLPPYSTVIGMVHTLCGFTSYHEMKISIQGKYFSKVNDLATRYEFKNGSKYDVERHQIKVDKYGVSRGVSTVELLVDLELLLHIIPEDPSLVPIIEKAFREPIEFPSLGRREDIATIQKVEVVDVEKRQPKKSTEISDGYNAYVPISLTENNSVHFKSHESSVGRDKLLGTRYLLTEKYERVNHGTEKAPKFFRKWRKKDVIYSSRIFVSKKDVFFFDEDDYLVFIEEEE
>NZ_CP027029.1|WP_003721306.1|355210_356080_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIIFQAESANYGESLGNISSLKKISRNNGDQYTYISRQAIRYNLMDQIGEKEAPVKAEGGGDKKVIQFLSEATITDFPELDFFGYLKTEKGSGGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKLNENMNIAQAEIHKSYYRYTITIDLDQIGIDGEIALDNKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNIVDVADNNIVIKNIKDLLTYEDIKENTRVGIIDGQFANSDEVKVELKAESVPAFFNDIKGKIDAYYESN
>NZ_CP027029.1|WP_014601720.1|353532_355221_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MQTEIEVRADDWLINTGLTGFLNIVGKENVRIDGQSIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLFKQTKFIDPYLDYKTTFVDPVLEYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK
>NZ_CP027029.1|WP_014601719.1|352794_353517_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIIPKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKGAEIQLNEANCIINFSTGDAETGIIFYNALISLRGSKVLFGAGNHITVKNIQIVPEKKIIGKQTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLIDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGIGTMTGSGFGMIEQF
>NZ_CP027029.1|WP_003721303.1|351626_352442_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_CP027029.1|WP_014600551.1|350075_351506_-|CapA-family-protein
MKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_CP027029.1|WP_014601725.1|364974_365343_-|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGFAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVVVLLV
>NZ_CP027029.1|WP_014601726.1|365489_366905_+|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGENGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALTAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGMGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK
>NZ_CP027029.1|WP_045131588.1|367036_368041_+|ROK-family-transcriptional-regulator
MAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKLIRDLVENEEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLLGEPEFVEDMSGEDLDITALKRNTKDIICAFPKISCVVIGVPGIEIGGKLRAMDFPLLLNVQLRETLEAEVNLPVLVETDTNAAILGYKNRPVKEENIVGLYYPERFPPGAGLLMNGEILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMALLTMSFYDPETIVLYTNFYFGQKDFMEELKEELKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI
>NZ_CP027029.1|WP_003721315.1|368072_369389_-|6-phospho-beta-glucosidase
MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAGREKLEIVGNLAKRMVKKAGVNMEIHLTLDREEALKDADFVTTQLRVGLLDARVKDERIPNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVLRYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTKDVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAEHGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQIVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAEAAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK
>NZ_CP027029.1|WP_003726690.1|369590_370343_+|MurR/RpiR-family-transcriptional-regulator
MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVSTTTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQIQNAVEILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLSDKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEMYQEANITSQLPALYTIENIAREIRTQIDKEKM
>NZ_CP027029.1|WP_014600555.1|370449_370893_+|hypothetical-protein
MYSNMKEKVVFTLIMCSLMILCMSSYNILLENGIGTDSLMIILKAFVPFLFIGFLLDFFVVGKIANRLHALLVSEDASKFKKIIMMQLLMVTFMCVLMSTLSLIVNQGEWSHLGILILRNYFVALFLQIFIVSPFVRLISPRIFALL
>NZ_CP027029.1|WP_003721318.1|370938_372600_-|SulP-family-inorganic-anion-transporter
MFKHILLSLNGYKISYLRNDVISGVGVAALTIPVAMGYAQVAGLPPIYGLYASFLPVIAYVIFASSPQLIFGIDATASAITGSIILGTAGLAAGSKEAIALAPILAFFCAIFLVLFSVLKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGDSFFSSLGIIFGQFFQSNWISFAMGVVTVIIVITCKKVIPKIPMSLVVLVLGTMAAYFFKLDQYNVDIVGKIPVGFPSLALPDFGASSWALAIGGGLVCAIATFAGSLLPSESFAMRNKYTIDDNRELFAYGVSNFVAAFSGCSPASASVSRTAANEQFRGKTQMVSIVAATIIALIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKVSRREATVWIVAALGTLLVGVIFGVLLGIFLSFINVVSRSMKTPIAILGVIEGRHGYFDLKRKSEAKPIPNVVIYRYSASLFFGNFNKFADGLKEAVQDDTKLVIFEASAIINIDTTATESMKDLLKWLDDKGIEYYFADLIDHLKTSFRKHDLGYLIDNGYTKKTVEDALDAYYAEHK
>NZ_CP027029.1|WP_014601727.1|372856_374188_+|DUF1254-domain-containing-protein
MATQKNLVDLATKAYIYGFPFIFNTQQIERYVTVGIGGTKQVPFNNFTHASRLAEPSDKFVSVNNDTIYSNAPIDVSAGPVVLSVPDTSGRYYVLQFVDAWSNNFAYVGKRATGTSAGKFLLTPPNWNGDVPADMIEIKFPTNIGIIIGRLACDGEADLPTVRELQEQLKITPLNEGKEVDGFPEYDRSLGKELAFFEQLRVYMAQFPAAERDLVKQESFAPIGLMEKGVSPYSNPSEELKNALIEGAKAGLANIKKATTNFKSENGWGLTQHLFDYNADFFEIGTKKSLDWVIEDREEAYIIRAVSAITALWGNHGYEAVYLMTWTDTDGNALNGKNKYTLELNPIPPVDSFWSITMYDLPEYFLCENPINRYSIGDRTPGIQYNDDGGIAIVVSKDEPTDPKERANWLPAPDAEFRPMFRLYNPQQPLVDGSYHFPGFEKK
>NZ_CP027029.1|WP_003721320.1|374232_374973_-|MerR-family-transcriptional-regulator
MQIKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSSNPYEEEARKLWGDKVVEKANEKVNNMSEKEQLTLKESFDAEFRHLASVRKLTPESEEAQLEIDHFFHYLNDTHGNIYSLEAFASLGEMYVNDERFTKNIDQFGDGLSQFLQEAMTIYAKNK
>NZ_CP027029.1|WP_003721321.1|375202_376678_+|membrane-protein
MIRKVKSISMWLWHHLTPQIFAVICVFIITIIALFMPPYIGMADNGDFFRIFSSNGLFVNNTNYDALQFGHFVKEFGIYQYFNENQVAIYSSQSIFIQMALLLNKLFWSTTVFDVRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYVVAALTVFIFADTAYTAYFNSFFSEGLILIMMLYISAGFLLLYQHKYNDYAMLGLIFVASLILITAKQQNAPIAVVIAVCGILVFFIRKNRAFRISAAATFLVIFLSGVVMYAFIPGEFVTINQYQTMTRGVLLDSENPEKSLEEMGMNSEFALLKGTNFYQKYKMIDLDSKLMEKEFYPNYNFVTVLSYYLENPKQFGKMLDLSAQNSFSIRPFEMGNFEKATGYKFKEKTHFFSAYSDVKEKFAPAKFTFLILWALVFLICYGVSAFKHFREKNIRGTLLFDLIVLLIGSGFAVILVTIVGDGEADLTKHNFLFNVCFDLTMLIGAASLLEVYLKKRGERNA

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Crispr_ID: NZ_CP027029_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027029_3

2236483-2236644

Orphan

Consensus_repeat	Method
TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP027029_3

>merge|NZ_CP027029|3|2236483-2236644|CRISPRCasFinder
TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGGGATTGGTTGAATTTAATAATTTGTGCTTCCCTTTTCGGGTTGTTCGTCCACTTTTTTTAATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG

>NZ_CP027029|3|3|2236483-2236644|CRISPRCasFinder
TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	GATTGGTTGAATTTAATAATTTGTGCTTCCCTTTTCGGGTTGTTCGTCCACT
TTTTTTAATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027029.1\|WP_003732482.1\|2237051_2237795_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224561
NZ_CP027029.1\|WP_003732478.1\|2227086_2228031_-\|lmo2445-family-class-3-internalin	unknown	unknown	gnl\|CDD\|275380
NZ_CP027029.1\|WP_003723350.1\|2232713_2233178_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|376590
NZ_CP027029.1\|WP_003733912.1\|2221770_2222190_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027029.1\|WP_014602223.1\|2233193_2235575_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NZ_CP027029.1\|WP_014602222.1\|2228090_2231366_-\|carbohydrate-binding-protein	unknown	unknown	gnl\|CDD\|224418
NZ_CP027029.1\|WP_010989997.1\|2242868_2244059_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP027029.1\|WP_014602220.1\|2221025_2221595_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NZ_CP027029.1\|WP_003732486.1\|2245235_2246282_-\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
NZ_CP027029.1\|WP_003723352.1\|2235608_2236355_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224561
NZ_CP027029.1\|WP_003723925.1\|2242067_2242823_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP027029.1\|WP_003772391.1\|2238829_2239003_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027029.1\|WP_003732480.1\|2231749_2232658_+\|Rgg/GadR/MutR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP027029.1\|WP_003732485.1\|2244193_2245204_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_CP027029.1\|WP_003727924.1\|2237977_2238697_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP027029.1\|WP_003727923.1\|2239105_2240398_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP027029.1\|WP_014602221.1\|2223139_2227072_-\|DUF5110-domain-containing-protein	unknown	unknown	gnl\|CDD\|224418
NZ_CP027029.1\|WP_003727926.1\|2236718_2236952_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|224233
NZ_CP027029.1\|WP_014602224.1\|2240533_2242066_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_CP027029.1\|WP_009932615.1\|2220084_2220981_-\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253

Protein	Function_ID	Function_description	E-value
NZ_CP027029.1\|WP_003732482.1\|2237051_2237795_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	1.94931e-122
NZ_CP027029.1\|WP_003732478.1\|2227086_2228031_-\|lmo2445-family-class-3-internalin	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	5.15574e-06
NZ_CP027029.1\|WP_003723350.1\|2232713_2233178_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	2.29197e-92
NZ_CP027029.1\|WP_014602223.1\|2233193_2235575_-\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NZ_CP027029.1\|WP_014602222.1\|2228090_2231366_-\|carbohydrate-binding-protein	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	0
NZ_CP027029.1\|WP_010989997.1\|2242868_2244059_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP027029.1\|WP_014602220.1\|2221025_2221595_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	2.43268e-39
NZ_CP027029.1\|WP_003732486.1\|2245235_2246282_-\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	4.30628e-92
NZ_CP027029.1\|WP_003723352.1\|2235608_2236355_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	3.8639e-136
NZ_CP027029.1\|WP_003723925.1\|2242067_2242823_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	7.345e-145
NZ_CP027029.1\|WP_003732480.1\|2231749_2232658_+\|Rgg/GadR/MutR-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.61922e-08
NZ_CP027029.1\|WP_003732485.1\|2244193_2245204_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP027029.1\|WP_003727924.1\|2237977_2238697_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.44979e-18
NZ_CP027029.1\|WP_003727923.1\|2239105_2240398_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP027029.1\|WP_014602221.1\|2223139_2227072_-\|DUF5110-domain-containing-protein	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	0
NZ_CP027029.1\|WP_003727926.1\|2236718_2236952_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|224233	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion].	6.04836e-13
NZ_CP027029.1\|WP_014602224.1\|2240533_2242066_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP027029.1\|WP_009932615.1\|2220084_2220981_-\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	2.05686e-71

>NZ_CP027029.1|WP_003723352.1|2235608_2236355_-|alpha/beta-fold-hydrolase
MKITPPQPFLFEKGKRAVLLLHGFTGSSADVRILGRFLQENNYTCYAPQYRGHGVSPDLLLKTGPNDWWEDVLEAYDHLKSLGYTEIAVAGLSLGGLFSLKLGFSRPLKGIIAMSTPTRMDSSSPIIQGFLDYVRNYKKLEGKTTEQIDAEMVAYKDAPMNTIAKLKDEISGVVAEIDMIYAPIMVVQGEKDDMVDVSGAQLIYDTVESTKKELHWFKESGHVITLDKERKEVNQAILTFLDSLDWQE
>NZ_CP027029.1|WP_014602223.1|2233193_2235575_-|ribonuclease-R
MEQKQMEEKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRKNRYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRKGDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHKVIVELTEYATGNTRARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDVVDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDVEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESIIKTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEARVVVDEEGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPKEDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEHSSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSDKQKRQREKPIDKTRNFKSSSKNNRNKRRTGKSEDVKPKTERKDDEWYTKPKKKKKKKPFYQGVAKESPKKKKRR
>NZ_CP027029.1|WP_003723350.1|2232713_2233178_-|SsrA-binding-protein-SmpB
MPKGDGKLVAQNKKARHDYAIEETFEAGIVLQGTEIKSVRNARVNLKDSYARIDKGEIFLHNMHISPYEQGNRYNHDPLRTRKLLLHKKQISRLIGETKESGYSIVPLKMYIKDGYAKVLIGVARGKKKYDKRQDLKQKEAKRDIERAFKERQQ
>NZ_CP027029.1|WP_003732480.1|2231749_2232658_+|Rgg/GadR/MutR-family-transcriptional-regulator
MQNIGDTLKFIRKSKNLTQQETCTNALSRSNYQKIENNKIMPSMDRFIQILLNFNMTLEEFEFVKRDFTPSPKENILYLYSKIITSSETDILLDVISKCDDYLANQNDIFISDIKASLEGILLAEKEHNFELAREKVAYIWDRLSEADELFWNDILILRNIFFIFENETAQHIVNRLISQLKKYRYLYPTLSIEISLHVNRATYLILDEEYELALHYIELSIKIAKHNHYYLQFCMAVAKKGIVLYKLDQKQQGKHFMQRALRVAKVLEEERILNGIKNEIDYFLHDELQDLSLNEFTKIDI
>NZ_CP027029.1|WP_014602222.1|2228090_2231366_-|carbohydrate-binding-protein
MKRRTRKCSLVFILGILIFSCLSGFGTNVFAMDGEYHSPYGDDDLYTVQPTERSPRDPKAGEDVILNITTWPIENGQDVWVEWTKNGVAQENVTAAYDYNSGNNTYWKADLGKFEKGDEITYTTKGSTNGGTAYESGPFTFYVTDWEYVQDVTSVVDNGDSITLNMTATAGDFSPKLYLSFEDLDTLRMELSPTGKETGHAGKSGYTVEDTAEKVTVTTEDLSIEIQKSPYRMEVHQADGTLLTSEYTTANSLGWLTDGKNVINQYQNNFMTPSDEAFYGFGERYDTINQRGKDVETYVYNEYQDQAQTERTYLAVPFFVSANKYGMYVNSDFHSQFQMASKVEDKYSFVLDNDGDMTNMLDYYVISGKDQNDIVNNYTDITGKTTLLPKWAFGLWMSANEWDRESDVSSALSNAKANDIPATGFVLEQWSDEETYYIWNNATYTAKKNGEAFSYDDFTFNGKWTDPKGMVDSVHDAGMNIVLWQVPVLKDDGTVYEQRDNDEEYMISQGYSADDGTGAPYRVPASQWFGNGILLDFTNKDAVDWWTSQREYLLTEVGIDGFKTDGGEMVWGRDTTFSNGEKGQEMRNRYPTDYVSSYFDFAKSINPEAVSFSRSGTSGAQKSGIYWSGDQTSTFDSFQAALKAGLSASTSGVSYWAWDMAGFTGDYPTAELYKRATAMAAFAPIMQFHSEKSDPSPSEERSPWNAVARTGDETILPTFQKYLYTRMNLLPYIYTAAKDTADNGKSMMRQMAMDYPEDVNARDLDEQYMFGDDLLVAPIVQEGQTEKEVYLPEGEWVDIWNGGVHPGGETISYYADVDTLPVFAKAGAIIPMNMTDGYQLGQNVGNDLKSYDNLTFRVYPSGDSEYSFYDDVNGGEMRDISVSEDFANEKVSVDLPAMADETTMQVFSTEPTSVTIDGADVAKADTLDAFNEATTGYYYDTVQNLTYVKAAAKDAKQAIVLNGVNHAPYEAEFGHLTNVTTASDHAGYTGTGFVAGFDAEKEAVEFDIDAVDGASDYTMEVRYSAGVEDATRTVYINGKKQQITLPKTANWDTWNTVEVPVTLQAGNNQVVFDFEADDTAGINFDHVVIKK
>NZ_CP027029.1|WP_003732478.1|2227086_2228031_-|lmo2445-family-class-3-internalin
MKKIIGLTFVAICCILFAPTIKAQADTVPLPAPIIEAFPVEAIAEAIAGELDKDSVNDTITQADLDTMTAIPLPSLGLTGEDLSVLNNEVFTNAIELAIWSNNIGELPDLSEALPALENIEANGANITVFPDANYPNLTNVDLSQNNFGFNIPKFVGMEGLVSINMENAGLSGYIAEDIWMNMPNLDSLILNENHLISIPEDIFLSQQLGTHSFANQTATYPPTTIKQGENLKVFVPFIYQALDFIAPSNHDLIIIKDNGRTLYEPPYPTYDGSYMYTIETAGLQPGEHLLEISLGYNSGEYTGWYDFPVTITE
>NZ_CP027029.1|WP_014602221.1|2223139_2227072_-|DUF5110-domain-containing-protein
MKKGMKQVCVSLAVVPLVWLNLGITQPLQVEVKAEETKKKETQKKANTETAKQLSKEEYAKLSAEEGLGNVLEATVTDNVITLKIDNGDEAEDDYLEISPLANNLLKVNLRPRNIENSPSTPMIDPNATFTAIGATIDLESDPMIISTDECTLEIDKEPARMTFKDKNGKTLLSESADGGIFDGGVRFKRGASDHVYGAYGISFSDGDLGMERDDTAADSNKTAQAGQQGNAGGPFMWSTAGYGLLVDSDGGYPYSVSDEEKLEFYYGDTIVEGRRYVKENVEMYLMSGEPEEIMSSYADVTGHTPMMPKWSLGFSNFEWGTNEAEFRENINTYRAKGIPIDSFAFDYDWKFYGDPTYGGDYGEFAWNTENFPSAKDTTLKSDMDALGVKMIGITKPRVVTNLEDGTATQQGKDADANGYWYPGQSAYEDYAFPVTVRSIDPYNADERNWWWSHSEDALDKGIVGWWNDETDKVSSNGADYWFGNFTTGFTSEAMYEGQRDYTNERVWQTGRTFYPGAQRYSTSTWSGDIGVQWKKGEVIDWANGMQEQPSTMLSTINLGQTKWGMDTGGFNANSGQVLNPDPELYSRWMEFSSLVPVFRTHGNQNQQRQPWFYGGTAEEVAKSSMTWRYSMIPYMYAYERQAYDSGVGLVQPLTFDNPTDENVVNLTDEWMFGDGLLAAPVLEEGAGSRDIYLPAGTWIDYNRGDVYEGNQTISYEVNDDDWTDVPMFVKQGAIMPMQQPQNYVGESAVKTIYLDTFASDKETSFTHYDDDGKSFDYEKDTYLKQKMTTSTSADTSTFTIGAKEGSYKADTENYIVKLHGNAAESVQVNGADSKVYDDLSALENADGSGYAVGSDVYGAVTYVKVPAQADADTVITTSGSASVVQTGTYEMETGSNFADTVADKPVAEKTYVDGYDKDGAGTTIYANVKDSGDYNVDLTYKNASADNQTLSIFVNGDYVKQTTLKPNTDWSVQSETLPLSAGKNSISYKVVTDTGDKADQVSLDKVNIGFTPTVAKVEAEEADLAGTLKVANDHWFYSGEGFVGGFGTAGDEIKFEVDVPADGEYVLNTRTANGTGMPQTLDLYTNGDYNSRVTFPSKGENWNIWSDTEKAVNLKAGTNKITFLRDGETTGNVNIDRILVSAEPINSPVQSEVNLLDNGGFERDAAATTNWVESHPDGQDKAYGVDSGSGVNPPESPAFGKQSAYFYLPGAYKQTLAQQIAVPVNNANYDVEAWVKVSKDDAAKAQMTVNNYDSSGGKTIDLVADDVWHYVTMKDVKVTTGNINTSFQMDSPGGTSIHIDNVRVMPSAE
>NZ_CP027029.1|WP_003733912.1|2221770_2222190_-|hypothetical-protein
MYRLLSIAFFGIAVICLLFPWMSSGIDAATFELVYEPAYKLIWMQPIIIVGYLGFLCTIFIPKFQRGKNRIVPFIGILILVLGLLNLAVRPLFGFDSFNFSIIDAYVSELVEPAFLIAVSASILSLIMYAIYLKKLENL
>NZ_CP027029.1|WP_014602220.1|2221025_2221595_-|YdcF-family-protein
MRSLRKIGIILIIIGFMYLLIVAAFMFSGSRTKPSENADTVLILGAKVKGNPAVPSLVLQERLDAAVAYLNEYPKAKVIVSGGQGADESATEASVMEEYLVNEGIARKRIETETKSKRTEENIKYSNAKFNLGKTVIVTSDYHMYRALMLAKRQGIDASGLPATSQTFAKYKGMMREVLSITYAWVFDH
>NZ_CP027029.1|WP_009932615.1|2220084_2220981_-|YafY-family-transcriptional-regulator
MKLERILAILVMILERKVLASELAEKFEVSTRTIYRDMDTLLYAGFPVVALPGKNGGFTMLDTYKLATFTFSEAEKQILLEALEARSEFMLNDSQEILREKITLLQTEKPTSKHIFFDSATQHRQQIEAEVKRKIAYIQKAFTTNKQLKITYIAMSGAETTREISPQKLNLMDGSWYLEAYCHKRAAIRHFKLTRITSLKEIDKAIMEVEETEYQPAEMKRIVLEFPKNQLGKLLDYFLQEEMETGDDYVRVSFFYDLERNIIPFLLMFGSAVKILEPASLQKDYKSEVEKLYFNLNC
>NZ_CP027029.1|WP_003727926.1|2236718_2236952_-|preprotein-translocase-subunit-SecG
MSTVLTVLLIIVSVLLITVIILQPGKSAGLSGAISGGAEQLFGKQKARGLELILHRTTIVLSVVFFAILIALAYFVQ
>NZ_CP027029.1|WP_003732482.1|2237051_2237795_-|alpha/beta-fold-hydrolase
MSADRSFTLKAGNRAVLLLHGFAGTTEDVRELGEILAENGYTVHAPNFRGHGDEPAIFLKTTPEMWYEDAVAGYRQLEKDGYDEIAIVGVAMGGVFALKMAESFSPKAIVPLCANVNRKMRYIPIENYLTKQLKKQGIVEQEADQMLKNYLPEIDVMTEARATFYKNVARDIEKIHVPTMIGQGCQDEEIDADNANYIFKHIHTNDKQLCFYAGSGHDIVNDCEKDILEEDLIYFLDDLVWLEEKVV
>NZ_CP027029.1|WP_003727924.1|2237977_2238697_-|alpha/beta-hydrolase
MIAEINGINLFYQIIGKGEPILLIHGNGQNHRSLKRMIDDLSTNHQVIAVDSRAHGKSEAGNTPLDFEVMALDMLSLLDYLKIDKYKVIGYSDGGIVALVMGKMQPNRQIASVVIGTNYHVNQIRFLPDLFCRVAYGAAFLLAPFSRFFERMKRQLALTIYHPHMSEADLQKISAPLLAVVGEYDLISSKDTKKMVHSVQHGEMVIVRNGLHYLPRQKPKQLLQLIHSFFSNLSAEIHK
>NZ_CP027029.1|WP_003772391.1|2238829_2239003_-|hypothetical-protein
MLMKVKNSQASKVLETPKIKDAVVHEKSHPLAEKHSVQKKIINADMPQQQFHRRLMK
>NZ_CP027029.1|WP_003727923.1|2239105_2240398_-|phosphopyruvate-hydratase
MSIITEVYAREVLDSRGNPTVEVEVYTEAGAFGRALVPSGASTGEYEAVELRDGDKARYLGKGVLKAVENVNDIIADKIIGFDVTDQIGIDKAMIELDGTPNKGKLGANAILGVSLAAARAAADELGVHLYEYLGGVNGKVLPVPMMNILNGGEHADNNVDVQEFMVMPVGAPNFKEALRMGAEILHALKAVLKGKGLNTGVGDEGGFAPNLKSNEEALETIMQAIKDAGYKPGEEVKLAMDAASSEFYNRETGKYELKGEGVTRTSEEMVTWYEEMITKYPIISIEDGLDENDWDGFKLLTERIGDRVQLVGDDLFVTNTTKLKEGIEKGIANSILIKVNQIGTLTETLDAIEMAKRAGYTAVISHRSGETEDSTIADIAVATNAGQIKTGAPTRTDRVAKYNQLLRIEDNLADLAEYHGNDTFYNLKK
>NZ_CP027029.1|WP_014602224.1|2240533_2242066_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MSKSPVAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGELKAAGLDVGLPEGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLEKAISDLNYGAIATVSGRFYAMDRDKRWERVEKAYKAIVSAEGEKFEDPIELVKASYANNKNDEFVVPAIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEWDHFDRGADHPKNIKFVTMTLYNPSVDAEVAFEPIEMKNVIGEVLSNEGLAQLRIAETEKYPHVTFFMNGGRNEEFPGESRILINSPKVETYDLQPEMSAYEVTDALVEDIKNDKHDAIILNFANPDMVGHSGMLEPTIKAIEAVDENLGRVVDLILEKGGSAIIFADHGNSETMSTPEGKPHTAHTTVPVPVIVTKKGVTLREGGRLADVAPTMLDLLGVKKPAEMTGESLIQK
>NZ_CP027029.1|WP_003723925.1|2242067_2242823_-|triose-phosphate-isomerase
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTNLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
>NZ_CP027029.1|WP_010989997.1|2242868_2244059_-|phosphoglycerate-kinase
MAKKVVTDLDLKDKKVLVRVDFNVPMKDGKITNDNRIVAALPTIEYILEQNGKAILFSHLGKVKTEEDKEGKSLRPVAVRLSELLGKEVKFVPTTRGPELEKAIDELKDGEVLLFENTRFEDIDGKKESKNDPELGKYWASLGDVFVNDAFGTAHRAHASNVGIASNLESAAGFLMEKEIKFIGGVVDNPARPLVAILGGAKVSDKIGVIENLLTKADKVLVGGGMTFTFMAAQGQEIGKSLLEADKVELAKGLLEKAGDKLVLPVDAVVSKEFSNDAPFHTVSADSIPADEMGLDIGQATIDLFTKELQGAKTVVWNGPMGVFELSNFAKGTIGVCEAIANLTDATTIIGGGDSAAAAMDLGFADKFTHISTGGGASLEYLEGKELPGVASISDK
>NZ_CP027029.1|WP_003732485.1|2244193_2245204_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQGRFDGEVEVHDGFFKVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTAQDKAELHIKAGAKKVVISAPATGDMKTIVYNVNHETLDGTETVISGASCTTNCLAPMAKVLEDKFGVVEGLMTTIHAYTGDQNTLDAPHPKGDFRRARAAAENIIPNTTGAAKAIGEVLPTLKGKLDGAAQRVPVPTGSLTELVTVLDKKVTVDEVNAAMEAASDPETFGYTSDQVVSSDIKGMTFGSLFDETQTKVLTVGDQQLVKTVAWYDNEMSYTAQLVRTLEYFAKIAK
>NZ_CP027029.1|WP_003732486.1|2245235_2246282_-|sugar-binding-transcriptional-regulator
MSDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGMLGMSERVLRGEVEFLKAQGLVEIASSGMTVTKEGLVVFRDLESVMNQLSGLHSMEEQLAKKLQIKKCLVVQGDSDDTPWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEMMTTDFAKGRELLFVPGRGGIGEDLDNQANTICDKMATKTNTKHRVLYVPEQLGEEAYRSLLKEPAIQEGLRLVQSANAIILGIGDALAMAKRRHTGEDVLEKIIHRKAVGEAFGYYFDEQGEVVHKVPTFGLQFEDLAQIPHIIAVAGGTSKAKAIKSYMKSAPKNTILITDEGAAKSLLKGSNTLLK

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Crispr_ID: NZ_CP027029_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027029_4

2542432-2542542

Orphan

Consensus_repeat	Method
AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027029_4

>merge|NZ_CP027029|4|2542432-2542542|CRISPRCasFinder
AGCGATGATTTAATCCTTCCCAGAACTTTCAAAATGTACTTTATTTTGATTTAGTTCTTCAATATAAATCTGAGCAAAGCGATGATTTAATCCTTCCCAGAAGTTTCAAAA

>NZ_CP027029|4|4|2542432-2542542|CRISPRCasFinder
AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	TGTACTTTATTTTGATTTAGTTCTTCAATATAAATCTGAGCAA
AGCGATGATTTAATCCTTCCCAGAAGTTTCAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027029.1\|WP_003722074.1\|2550150_2551098_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NZ_CP027029.1\|WP_003722062.1\|2539526_2540123_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP027029.1\|WP_003732084.1\|2540578_2542318_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|235505
NZ_CP027029.1\|WP_012951101.1\|2536448_2537300_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP027029.1\|WP_003732088.1\|2549169_2550108_-\|GW-domain-containing-glycosaminoglycan-binding-protein	unknown	unknown	gnl\|CDD\|226309
NZ_CP027029.1\|WP_012951102.1\|2535368_2535965_+\|dihydroxyacetone-kinase-subunit-L	unknown	unknown	gnl\|CDD\|274099
NZ_CP027029.1\|WP_009931588.1\|2545473_2545629_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027029.1\|WP_014602268.1\|2546200_2546842_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027029.1\|WP_003732079.1\|2534357_2535347_+\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|237724
NZ_CP027029.1\|WP_014602267.1\|2543667_2545032_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP027029.1\|WP_003722063.1\|2540231_2540549_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP027029.1\|WP_003722061.1\|2539266_2539512_-\|YaaL-family-protein	unknown	unknown	gnl\|CDD\|378478
NZ_CP027029.1\|WP_003727657.1\|2543126_2543309_-\|DUF3188-domain-containing-protein	unknown	unknown	gnl\|CDD\|371501
NZ_CP027029.1\|WP_003722067.1\|2543311_2543533_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027029.1\|WP_014602265.1\|2535968_2536343_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	unknown	unknown	gnl\|CDD\|184702
NZ_CP027029.1\|WP_014602269.1\|2551239_2552979_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NZ_CP027029.1\|WP_014602266.1\|2537418_2538258_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP027029.1\|WP_003722065.1\|2542644_2543109_-\|DUF3284-domain-containing-protein	unknown	unknown	gnl\|CDD\|378692
NZ_CP027029.1\|WP_014601198.1\|2538378_2539221_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|223729
NZ_CP027029.1\|WP_003732087.1\|2547539_2549054_-\|gluconokinase	unknown	unknown	gnl\|CDD\|212659

Protein	Function_ID	Function_description	E-value
NZ_CP027029.1\|WP_003722074.1\|2550150_2551098_-\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	1.13667e-05
NZ_CP027029.1\|WP_003722062.1\|2539526_2540123_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	7.77001e-132
NZ_CP027029.1\|WP_003732084.1\|2540578_2542318_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP027029.1\|WP_012951101.1\|2536448_2537300_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	3.97147e-62
NZ_CP027029.1\|WP_003732088.1\|2549169_2550108_-\|GW-domain-containing-glycosaminoglycan-binding-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	3.04876e-98
NZ_CP027029.1\|WP_012951102.1\|2535368_2535965_+\|dihydroxyacetone-kinase-subunit-L	gnl\|CDD\|274099	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.	1.69543e-82
NZ_CP027029.1\|WP_003732079.1\|2534357_2535347_+\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|237724	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional.	0
NZ_CP027029.1\|WP_014602267.1\|2543667_2545032_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	4.45629e-162
NZ_CP027029.1\|WP_003722063.1\|2540231_2540549_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	3.53269e-41
NZ_CP027029.1\|WP_003722061.1\|2539266_2539512_-\|YaaL-family-protein	gnl\|CDD\|378478	pfam10704, DUF2508, Protein of unknown function (DUF2508). This family is conserved in Firmicutes. Several members are annotated as being the protein YaaL. The function is not known.	2.68189e-15
NZ_CP027029.1\|WP_003727657.1\|2543126_2543309_-\|DUF3188-domain-containing-protein	gnl\|CDD\|371501	pfam11384, DUF3188, Protein of unknown function (DUF3188). This bacterial family of proteins has no known function.	1.21027e-11
NZ_CP027029.1\|WP_014602265.1\|2535968_2536343_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	gnl\|CDD\|184702	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional.	7.42506e-49
NZ_CP027029.1\|WP_014602269.1\|2551239_2552979_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NZ_CP027029.1\|WP_014602266.1\|2537418_2538258_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.98398e-85
NZ_CP027029.1\|WP_003722065.1\|2542644_2543109_-\|DUF3284-domain-containing-protein	gnl\|CDD\|378692	pfam11687, DUF3284, Domain of unknown function (DUF3284). This family of proteins with unknown function appears to be restricted to Firmicutes.	5.35099e-31
NZ_CP027029.1\|WP_014601198.1\|2538378_2539221_+\|aldo/keto-reductase	gnl\|CDD\|223729	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only].	3.11817e-130
NZ_CP027029.1\|WP_003732087.1\|2547539_2549054_-\|gluconokinase	gnl\|CDD\|212659	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain.	0

>NZ_CP027029.1|WP_003732084.1|2540578_2542318_-|DNA-polymerase-III-subunit-gamma/tau
MAYQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEETMERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQSVAGGGNVPADAASGSDVSDLKRQMEQMHQEIQTLKKQIASGAGAAPADKPTQNRGGSKKAINNGKQFKAPIGKINHVLGEAKKENLQLIRGCWGELLSMLMASQAALLNDAEPVAASQDTFVLKFKHEIHCQMAMDNPNFVETITSSIARLTQVNYTFIGIPEDQWADVRENFLHSHGSDADAEDGANPEAKKPAEDPFVAEAAKLVGEDLLEIKD
>NZ_CP027029.1|WP_003722063.1|2540231_2540549_-|YbaB/EbfC-family-nucleoid-associated-protein
MRGMGNMQGMMKQMQKMQKEMAKAQADLEAQEFTGTAGGGMVTVKATGKRVITDVVINEEVVDPEDIEMLQDLVLAATNDVLKQIEDTTSQTMGKFTQGLNIPGM
>NZ_CP027029.1|WP_003722062.1|2539526_2540123_-|recombination-protein-RecR
MHYPEPITKLIDSFMKLPGIGPKSAARLAFYVLDMKEDDVLDFAKALVDAKRNLSFCSVCGHITDKDPCYICADTSRDRSVICVVQESKDVIAMEKMRDFHGLYHVLHGTISPMDGIGPEDINIPDLLKRLQDDTIEEVILATNPNVEGEATAMYISRLLKPSGIKVTRIAHGLPVGGDLEYADEVTLSKAMEGRREV
>NZ_CP027029.1|WP_003722061.1|2539266_2539512_-|YaaL-family-protein
MESRSNKFGRKKNKKIGKLHKSYDAYLMELIEVTQENWHKQKVLMRKSFEYDPNLEYEEKKAEARYFYLFKEARTRQLKNK
>NZ_CP027029.1|WP_014601198.1|2538378_2539221_+|aldo/keto-reductase
MTLSFSDTYRLNNGIEMPRHGFGVYKLTDEARMRTALETAVDVGYRLFDTASFYHNEKELGDFFASSGLKRDEFFVTTKMWNTEQGYDETLRAFEKSQKKLQLDQIDLYLVHWPKQNTFFDTWRAVEKLYDEGLVRAIGVSNFEAHHLDRLRTSANVLPVVDQLETHPHFPNHLLHRYLEELHIVHQAWSPLGRGGVLQEQILIDLAEKHGKSPAQIVLRWHLQNNISIIPKSETPSRIRENAAIYDFELSEADMRQVERLNTGERVSHAPDVMYVRSEI
>NZ_CP027029.1|WP_014602266.1|2537418_2538258_+|Cof-type-HAD-IIB-family-hydrolase
MTTQAIILDIDGTLLNDDKKISPETKKALITAQENGVKLILASGRPTTGMHAYAEQLEMEKHHGLLVSYNGAKVVDCATNEELFNQALTVEEGKAVLEHMKQFKVKVMIDKEDYMYTNDVYDCYVPYHGEEINIIQYESRGGNFKLCEKDDLAAFLDYRLSKILTAGDPAYMQKNYQAMMAPFKDTLNCVFTADFYFEFTAQGIDKAKALDTVLTPMGIHAENIIAFGDGHNDITMVEYAGTGIAMQNAVAELKAAASSVTLSNNEDGIAHVLNSLIPS
>NZ_CP027029.1|WP_012951101.1|2536448_2537300_+|MurR/RpiR-family-transcriptional-regulator
MNILIKIRELTNLTNSEKELANYILVNPKKTLQFKPKELAAAAFVSAATIYRLINKLGLNGIGELKIEIASSLRETNAEKDINYDYPILESDTPYQIMTNLNQIYKGTIDETLNNADPEELVKIGEKLINAKTIDVYAASANLFFAQNFKFQMQEIGVLVNVPEEDYIQSLSAANSDENHIAIVVSYGGRSRTLQRVVKILSENNVDIILITSMQDNPLVEFATHKIYMASAENHYNKVSSFSTRQSLLSIFDTLYSIYFNQNYEKNIQYKTTNYQKMNTELE
>NZ_CP027029.1|WP_014602265.1|2535968_2536343_+|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM
MTKPYGVVIISHSKDVAKGVHDIIKEIAPDVSITHAGGTEDGRIGTSFDAVNEAIESNEADKIYTFYDLGSAKMNIETVEEISEKEIILFNAPILEGAYATAAQVQMDEKPEVIAANLKTIEIK
>NZ_CP027029.1|WP_012951102.1|2535368_2535965_+|dihydroxyacetone-kinase-subunit-L
MTYDKDWALRWLNDFGERVQENKQLLSDLDQAIGDGDHGINMARGLSELKKVFTEKEPADLKDVFKTAGMTMVSKVGGASGPLYGTAFLNMSKAVDADTIDAVGLTKVIEAGLEGIEKRGKSHAGEKTMIDVWEPVVHALHQEDLTDDVVDAALQKTKDLKATKGRASYLGERSIGHLDPGAYSSALLFHAMLQTEVS
>NZ_CP027029.1|WP_003732079.1|2534357_2535347_+|dihydroxyacetone-kinase-subunit-DhaK
MKKILNGTDQVVEQMVEGLVKSHADVVHRVEGTRVIARNDKRPGKVGLVSGGGSGHEPAHAGYVGRGMLSAAVCGDVFTSPTPDQIYEGIKAADQGAGVLLIVKNYTGDVMNFEMAADLADADDIKVEQIVVDDDIAVEDSTFTTGRRGVAGTVLVHKIIGAAAEAGASLDELKALGEKVIASVKTLGVALSPCTVPEVGHPGFELGDDEIELGIGIHGEPGFTREKIMPSASLAKQLYERISNESKLLAGDKVVVLVNGMGATPLMEQYVFANDVHELLKNAGVQVAKTLVGDYMTSLEMAGLSLTILKLEDEKWVDMLKLPVDTIAW
>NZ_CP027029.1|WP_003722065.1|2542644_2543109_-|DUF3284-domain-containing-protein
MNVTQKLYISQKECFDTLVSSAIYDVKNATGKTLQVRKLEGYKYQRTMSNGALATTKIVKVQPNELYQFETSSRVNTHTTTYTIKSTSETTCEVTYNELIETEKALNKMNNIIVGFMFGFFRKKRVKNLLKSIELSVINESKQKQEKLAAKSEQ
>NZ_CP027029.1|WP_003727657.1|2543126_2543309_-|DUF3188-domain-containing-protein
MKIVNALFLISIGLIIIMFSPSYGKDGMASVPLLVTGLAVVLIGCVFIVLKIRKDKKEKN
>NZ_CP027029.1|WP_003722067.1|2543311_2543533_-|hypothetical-protein
MIILNCPMKRDYITELLETYDKDGVTFKKIDEKGMKLTFETNIEDEEKAAKIAKETIKATEIGSVLYFQVSVG
>NZ_CP027029.1|WP_014602267.1|2543667_2545032_-|PTS-sugar-transporter-subunit-IIC
MNGLTAFLEKYFVPVAAKIGSQKHLVALRDAFISTMPITMAGSIAVLLNAFFRDFPTDWGWTGFVEAMQPLIDINGYVYNGTLAIVSIIFAFSLGYNLSKAYEVDRLAGGLVSLAAFVMNLTVTVSLDAVKAAIAASNANFDIATLPKEFAGIYGFFSLSQVNGTGLFTAMIFGFISTIIYAKLMRRNIIIKMPDSVPPAVSKAFAAIIPALVALYVVGIIDWAFFKITNMDVITWISKTIQEPLLSLSQGYGAVLLVTFLVQLLWFFGIHGPNVLAPVLESLWGTAQLQNISAAQEGAKLPFEWVRGSFDAYVWMGGSGGTLVLIIALLMFSKRADARTVAKLSLAPGIFNINEPIMFGLPIVLNTIYLIPFLIAPMVMVTIAYFATTLGIVGPVKIAVVWVMPPLLNSFLATGGDWMAPVISLINMVVAFLIWVPFVITANRVGVPEEEMKA
>NZ_CP027029.1|WP_009931588.1|2545473_2545629_+|hypothetical-protein
MAVKRDMPEESKNSKVVKKEHFSIVFPDDIKEPATVEEKKKQDAEKKTDDN
>NZ_CP027029.1|WP_014602268.1|2546200_2546842_-|hypothetical-protein
MQQLKSKKKWLPALIVAVFVGIIVILAIMFGFFQRQEVFDKYEVAYEIDGKLYEVFPISATDIGVDKKSKDKNLYFRVNSYYNIDYLFRLAYKQYEINEPSTNKYYSGLIDYSVADNAYVTQKDVYITNNESYATYDFFDKNGKKIYSYNPEETSNDDYIVRIKPTILQGYEKSDIGSYDDYLNITALFKDKLGMDVNVRIDDDKEMVIFSIK
>NZ_CP027029.1|WP_003732087.1|2547539_2549054_-|gluconokinase
MTSKPYIMGVDIGTSSTKAVLFNQRGEVIFRQATHYELITDETGKAEESPTEIFDAVLTSIQAVMKNINTEELAGISFSSAMHSLIMVGSNGELLTECITWADGRSSETLEKVKRDNYLFQLYEATGTPIHPMSPFAKICWLKEEKPTLFKRTEKFVDIKSYILYRLFGVWVMDESLASGTGLYNIMEHDWEFEAMEIVKLTPDFLPKVVPETYQLAGVKKEYAELMGIPENLPFIIGGSDGALANIGIQATGQNDVTITVGTSGAVRKLTDQFQIDSRGRTFCYGAGDGYFIAGGAVNNGGKVVEWGLQQFGSEAEISRRDFASFIAKIEEVPPGAAGLLFQPYLLGERAPFWTNDIRGGFVGLTINHTKAHFIRAILEGVAFNLAEVYEAVSAPDDIIYVTGGISAHDAWCKLLADILNREIRVPHTIEGSSLGAAIIGMRSLGILKDLNLKHTLPIKAVYHPSENVLKYAELRLIFKQVTTQLMSSYSQLNSWQKKFDINS
>NZ_CP027029.1|WP_003732088.1|2549169_2550108_-|GW-domain-containing-glycosaminoglycan-binding-protein
MKKLLSGLIVVLMVSLLGHSFNAEAASYEKIIYDKAVNLKGVVNQSKRNDGINSKMYKTSSSVKYLGSAKKYDKKTLIITREGKTARAKWYYCKLGNTTIGWIDSRAFTNIGKPTIADAVPALWNSKKAIITTKPKSTTATTYFFQKNSAGNWYEVRHFTSHIGKWGFDPKFSEKSSGTPVGVYRTGIAFGQKGNPGTKLTFRAITNRSYWISNSNDKAYNTWQERNSSSSADEKMKIPQYKYGMEVKYNAKRVKGKGSAVFYHVDSPKYNYTLGCVAQSEANTKEVLKFADKNTLIVLGEESRIKTFYGIN
>NZ_CP027029.1|WP_003722074.1|2550150_2551098_-|LPXTG-cell-wall-anchor-domain-containing-protein
MKKFHGLILTALVTCLIIPFSLAASAETNENGNNSTPTEEKTTDTTENIITEEKTEPAEPTKDTTVTPPQKSKVQTTIDITDSQEVYSYEQNSKIDLKDFTATLTDYTDTKLTNYRLAANSKLSTAQTGIQEVTLLGDNEDGKTTAVKLNYLVKEKTAQLTITDMNFDLETKIFTGKTKPFASVYMSSPADENFGEGTTTADKDGYFYAEWATTPKQITAYAFDESGNYSEEVTYQVPAKKQNEAVVTAPDKVKKIETKNAVKSATTKPTDVTKVTKDDKTDLPSTGDKGTEWIFVVAGVIVILVAVLLLRKRKK
>NZ_CP027029.1|WP_014602269.1|2551239_2552979_-|thiol-reductant-ABC-exporter-subunit-CydC
MRKSSWIIPYIKENRGLFLLVIFLGTLTFASAGALMFTSGHLISKSSLMPESIMAVYISTVGVRAFGIMRSVSRYVERLSSHSLVLRILEKMRVRLYRLLEPQALLLKSRYKTGDILGLLAGDIEHLQNFYLTTMLPAIVSLVLYAGVVIALGAFSIPFAALFVLLIGLLVLVLPWVSLLYARGKNAYLKQGRNSLYQKFTDAVFGISDWKFSGREKTFISNYEKDEADMLRTENKQFHFVNWRDFFSQLVVGFMVIVMVYWSTAESRDGAFSGTMIAAFVLAIMALAEAFVPVSSAISDKSLYQDSLARLDKIEDPALPTFEEETKEIERINTENVVLKAENLTFAYDEKSPEILNGFDFTLQQGEKVAIIGRSGTGKSTFLKLVQGALLPTAGKVTMNDVEVEKLRPQIPELTSMLNQKAHLFSTTVLNNIRLGNQDASDEEVYEAAKKVQLHDFIMSMPDGYHTQMSEMGERFSGGERGRIALARILLQNTPIVILDEPTVGLDPITERDLLATIFETLADKSLIWVTHHLVGVEKMDRVLFLEEGKTLMEGPHAELMAEEPRYKRLYQLDRPIEL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP027029_2	2.16\|362106\|38\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362106-362143	38	NZ_CP027029.1	3058610-3058647	0	1.0

1. spacer 2.16|362106|38|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to position: 3058610-3058647, mismatch: 0, identity: 1.0

caaagcaagtacagaagcgtattatgctctattagagt	CRISPR spacer
caaagcaagtacagaagcgtattatgctctattagagt	Protospacer
**************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP027029_1	1.4\|344226\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344226-344260	35	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	214611-214645	0	1.0
NZ_CP027029_1	1.4\|344226\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344226-344260	35	MT500540	Listeria phage LP-HM00113468, complete genome	39834-39868	0	1.0
NZ_CP027029_1	1.4\|344226\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344226-344260	35	KJ094023	Listeria phage LP-101, complete genome	5084-5118	0	1.0
NZ_CP027029_1	1.8\|344482\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344482-344516	35	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	214611-214645	0	1.0
NZ_CP027029_1	1.8\|344482\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344482-344516	35	MT500540	Listeria phage LP-HM00113468, complete genome	39834-39868	0	1.0
NZ_CP027029_1	1.8\|344482\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344482-344516	35	KJ094023	Listeria phage LP-101, complete genome	5084-5118	0	1.0
NZ_CP027029_1	1.9\|344546\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344546-344581	36	MT500540	Listeria phage LP-HM00113468, complete genome	683-718	0	1.0
NZ_CP027029_1	1.9\|344546\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344546-344581	36	NC_009812	Listeria phage B025, complete genome	3896-3931	0	1.0
NZ_CP027029_1	1.9\|344546\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344546-344581	36	KJ094023	Listeria phage LP-101, complete genome	3936-3971	0	1.0
NZ_CP027029_1	1.10\|344611\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344611-344645	35	DQ003642	Listeria phage A006, complete genome	15712-15746	0	1.0
NZ_CP027029_2	2.10\|361712\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	361712-361748	37	NC_009813	Listeria phage B054, complete genome	37396-37432	0	1.0
NZ_CP027029_2	2.23\|362569\|34\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362569-362602	34	NC_003216	Listeria phage A118, complete genome	31160-31193	0	1.0
NZ_CP027029_2	2.23\|362569\|34\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362569-362602	34	AJ242593	Bacteriophage A118 complete genome	31160-31193	0	1.0
NZ_CP027029_2	2.23\|362569\|34\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362569-362602	34	MH341451	Listeria phage PSU-VKH-LP019, complete genome	27908-27941	0	1.0
NZ_CP027029_2	2.24\|362632\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362632-362666	35	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	2235-2269	0	1.0
NZ_CP027029_2	2.24\|362632\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362632-362666	35	DQ003642	Listeria phage A006, complete genome	18012-18046	0	1.0
NZ_CP027029_2	2.25\|362696\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362696-362732	37	NC_003216	Listeria phage A118, complete genome	38899-38935	0	1.0
NZ_CP027029_2	2.25\|362696\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362696-362732	37	AJ242593	Bacteriophage A118 complete genome	38899-38935	0	1.0
NZ_CP027029_2	2.25\|362696\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362696-362732	37	DQ003642	Listeria phage A006, complete genome	36194-36230	0	1.0
NZ_CP027029_2	2.27\|362827\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362827-362863	37	KP399678	Listeria phage vB_LmoS_293, complete genome	29179-29215	0	1.0
NZ_CP027029_2	2.44\|363931\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363931-363966	36	NC_021539	Listeria phage LP-030-2, complete genome	32865-32900	0	1.0
NZ_CP027029_2	2.44\|363931\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363931-363966	36	NC_009812	Listeria phage B025, complete genome	37685-37720	0	1.0
NZ_CP027029_2	2.44\|363931\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363931-363966	36	KJ094023	Listeria phage LP-101, complete genome	38525-38560	0	1.0
NZ_CP027029_2	2.45\|363996\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363996-364032	37	MH299806	Listeria phage LP-KV022, complete genome	50264-50300	0	1.0
NZ_CP027029_2	2.45\|363996\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363996-364032	37	MN114083	Listeria phage LP-013, complete genome	45785-45821	0	1.0
NZ_CP027029_2	2.45\|363996\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363996-364032	37	NC_021785	Listeria phage LP-110, complete genome	7982-8018	0	1.0
NZ_CP027029_2	2.45\|363996\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363996-364032	37	MN128593	Listeria phage LP-031, complete genome	45080-45116	0	1.0
NZ_CP027029_2	2.45\|363996\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363996-364032	37	MN904502	Listeria phage LP-018, complete genome	45239-45275	0	1.0
NZ_CP027029_2	2.45\|363996\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363996-364032	37	KJ094021	Listeria phage LP-114, complete genome	35521-35557	0	1.0
NZ_CP027029_2	2.45\|363996\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363996-364032	37	MN114082	Listeria phage LP-010, complete genome	45070-45106	0	1.0
NZ_CP027029_2	2.49\|364256\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364256-364292	37	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	202696-202732	0	1.0
NZ_CP027029_2	2.49\|364256\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364256-364292	37	KJ094023	Listeria phage LP-101, complete genome	36939-36975	0	1.0
NZ_CP027029_1	1.6\|344355\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344355-344389	35	MH341453	Listeria phage PSU-VKH-LP041, complete genome	10139-10173	1	0.971
NZ_CP027029_1	1.9\|344546\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344546-344581	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	213463-213498	1	0.972
NZ_CP027029_2	2.17\|362173\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362173-362209	37	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	225937-225973	1	0.973
NZ_CP027029_2	2.17\|362173\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362173-362209	37	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	577-613	1	0.973
NZ_CP027029_2	2.17\|362173\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362173-362209	37	KJ094023	Listeria phage LP-101, complete genome	16410-16446	1	0.973
NZ_CP027029_2	2.22\|362505\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362505-362539	35	MN904502	Listeria phage LP-018, complete genome	46274-46308	1	0.971
NZ_CP027029_2	2.22\|362505\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362505-362539	35	JX442241	Listeria phage P70, complete genome	52734-52768	1	0.971
NZ_CP027029_2	2.25\|362696\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362696-362732	37	MH341451	Listeria phage PSU-VKH-LP019, complete genome	37088-37124	1	0.973
NZ_CP027029_2	2.27\|362827\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362827-362863	37	DQ003637	Listeria phage A500, complete genome	28158-28194	1	0.973
NZ_CP027029_2	2.27\|362827\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362827-362863	37	KP399677	Listeria phage vB_LmoS_188, complete genome	27810-27846	1	0.973
NZ_CP027029_2	2.29\|362958\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362958-362992	35	JX442241	Listeria phage P70, complete genome	52280-52314	1	0.971
NZ_CP027029_2	2.31\|363088\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363088-363122	35	MH299806	Listeria phage LP-KV022, complete genome	49650-49684	1	0.971
NZ_CP027029_2	2.31\|363088\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363088-363122	35	JB137888	Sequence 7 from Patent WO2012159774	3663-3697	1	0.971
NZ_CP027029_2	2.31\|363088\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363088-363122	35	MN114083	Listeria phage LP-013, complete genome	45171-45205	1	0.971
NZ_CP027029_2	2.31\|363088\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363088-363122	35	NC_021785	Listeria phage LP-110, complete genome	7368-7402	1	0.971
NZ_CP027029_2	2.31\|363088\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363088-363122	35	MN128593	Listeria phage LP-031, complete genome	44466-44500	1	0.971
NZ_CP027029_2	2.31\|363088\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363088-363122	35	NC_021787	Listeria phage LP-037, complete genome	1834-1868	1	0.971
NZ_CP027029_2	2.31\|363088\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363088-363122	35	MN904502	Listeria phage LP-018, complete genome	44625-44659	1	0.971
NZ_CP027029_2	2.31\|363088\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363088-363122	35	JX442241	Listeria phage P70, complete genome	51085-51119	1	0.971
NZ_CP027029_2	2.31\|363088\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363088-363122	35	KJ094021	Listeria phage LP-114, complete genome	34907-34941	1	0.971
NZ_CP027029_2	2.31\|363088\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363088-363122	35	MN114082	Listeria phage LP-010, complete genome	44456-44490	1	0.971
NZ_CP027029_2	2.40\|363670\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363670-363705	36	KJ094023	Listeria phage LP-101, complete genome	29149-29184	1	0.972
NZ_CP027029_2	2.42\|363801\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363801-363835	35	MH299806	Listeria phage LP-KV022, complete genome	51799-51833	1	0.971
NZ_CP027029_2	2.42\|363801\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363801-363835	35	NC_021785	Listeria phage LP-110, complete genome	9517-9551	1	0.971
NZ_CP027029_2	2.42\|363801\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363801-363835	35	MN128593	Listeria phage LP-031, complete genome	46615-46649	1	0.971
NZ_CP027029_2	2.42\|363801\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363801-363835	35	MN904502	Listeria phage LP-018, complete genome	46772-46806	1	0.971
NZ_CP027029_2	2.43\|363865\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363865-363901	37	KJ094023	Listeria phage LP-101, complete genome	18674-18710	1	0.973
NZ_CP027029_2	2.44\|363931\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363931-363966	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	204282-204317	1	0.972
NZ_CP027029_2	2.44\|363931\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363931-363966	36	MT500540	Listeria phage LP-HM00113468, complete genome	10614-10649	1	0.972
NZ_CP027029_2	2.44\|363931\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363931-363966	36	AJ312240	Bacteriophage PSA complete genome	32207-32242	1	0.972
NZ_CP027029_2	2.48\|364191\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364191-364226	36	MH299806	Listeria phage LP-KV022, complete genome	4649-4684	1	0.972
NZ_CP027029_2	2.48\|364191\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364191-364226	36	JB137888	Sequence 7 from Patent WO2012159774	48996-49031	1	0.972
NZ_CP027029_2	2.48\|364191\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364191-364226	36	KJ094025	Listeria phage LP-032 contig 2, partial genome	38367-38402	1	0.972
NZ_CP027029_2	2.48\|364191\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364191-364226	36	MN114083	Listeria phage LP-013, complete genome	64794-64829	1	0.972
NZ_CP027029_2	2.48\|364191\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364191-364226	36	NC_021785	Listeria phage LP-110, complete genome	27495-27530	1	0.972
NZ_CP027029_2	2.48\|364191\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364191-364226	36	MN128593	Listeria phage LP-031, complete genome	64602-64637	1	0.972
NZ_CP027029_2	2.48\|364191\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364191-364226	36	NC_021787	Listeria phage LP-037, complete genome	21526-21561	1	0.972
NZ_CP027029_2	2.48\|364191\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364191-364226	36	MN904502	Listeria phage LP-018, complete genome	64418-64453	1	0.972
NZ_CP027029_2	2.48\|364191\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364191-364226	36	JX442241	Listeria phage P70, complete genome	4649-4684	1	0.972
NZ_CP027029_2	2.48\|364191\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364191-364226	36	KJ094020	Listeria phage LP-026, complete genome	48696-48731	1	0.972
NZ_CP027029_2	2.48\|364191\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364191-364226	36	KJ094021	Listeria phage LP-114, complete genome	54645-54680	1	0.972
NZ_CP027029_2	2.48\|364191\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364191-364226	36	MN114082	Listeria phage LP-010, complete genome	63763-63798	1	0.972
NZ_CP027029_2	2.49\|364256\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364256-364292	37	AJ312240	Bacteriophage PSA complete genome	30621-30657	1	0.973
NZ_CP027029_2	2.57\|364773\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364773-364809	37	KY705255	Streptococcus phage P0095, complete genome	33666-33702	1	0.973
NZ_CP027029_2	2.57\|364773\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364773-364809	37	KY705251	Streptococcus phage P0091, complete genome	32778-32814	1	0.973
NZ_CP027029_2	2.57\|364773\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364773-364809	37	KX879643	Streptococcus phage CHPC1151, complete genome	31697-31733	1	0.973
NZ_CP027029_2	2.57\|364773\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364773-364809	37	MK202161	Streptococcus phage CHPC1282, complete genome	32484-32520	1	0.973
NZ_CP027029_2	2.57\|364773\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364773-364809	37	KY705252	Streptococcus phage P0092, complete genome	31845-31881	1	0.973
NZ_CP027029_2	2.57\|364773\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364773-364809	37	MH937506	Streptococcus phage CHPC1148, complete genome	35552-35588	1	0.973
NZ_CP027029_2	2.57\|364773\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364773-364809	37	KY705253	Streptococcus phage P0093, complete genome	32631-32667	1	0.973
NZ_CP027029_2	2.57\|364773\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364773-364809	37	KY705254	Streptococcus phage P0094, complete genome	31034-31070	1	0.973
NZ_CP027029_1	1.4\|344226\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344226-344260	35	NC_009812	Listeria phage B025, complete genome	5044-5078	2	0.943
NZ_CP027029_1	1.6\|344355\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344355-344389	35	NC_009813	Listeria phage B054, complete genome	10139-10173	2	0.943
NZ_CP027029_1	1.8\|344482\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344482-344516	35	NC_009812	Listeria phage B025, complete genome	5044-5078	2	0.943
NZ_CP027029_2	2.3\|361257\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	361257-361291	35	JB137888	Sequence 7 from Patent WO2012159774	2439-2473	2	0.943
NZ_CP027029_2	2.8\|361582\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	361582-361617	36	KJ094021	Listeria phage LP-114, complete genome	35818-35853	2	0.944
NZ_CP027029_2	2.10\|361712\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	361712-361748	37	MH341453	Listeria phage PSU-VKH-LP041, complete genome	37986-38022	2	0.946
NZ_CP027029_2	2.29\|362958\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362958-362992	35	NC_021787	Listeria phage LP-037, complete genome	3029-3063	2	0.943
NZ_CP027029_2	2.31\|363088\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363088-363122	35	KJ094026	Listeria phage LP-032 contig 3, partial genome	13183-13217	2	0.943
NZ_CP027029_2	2.31\|363088\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363088-363122	35	KJ094020	Listeria phage LP-026, complete genome	27985-28019	2	0.943
NZ_CP027029_2	2.34\|363279\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363279-363313	35	MH341453	Listeria phage PSU-VKH-LP041, complete genome	39753-39787	2	0.943
NZ_CP027029_2	2.34\|363279\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363279-363313	35	NC_009813	Listeria phage B054, complete genome	39161-39195	2	0.943
NZ_CP027029_2	2.41\|363735\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363735-363771	37	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	7374-7410	2	0.946
NZ_CP027029_2	2.41\|363735\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363735-363771	37	KJ535721	Listeria phage List-36, complete genome	122410-122446	2	0.946
NZ_CP027029_2	2.42\|363801\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363801-363835	35	JB137888	Sequence 7 from Patent WO2012159774	1514-1548	2	0.943
NZ_CP027029_2	2.43\|363865\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363865-363901	37	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	228202-228238	2	0.946
NZ_CP027029_2	2.45\|363996\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363996-364032	37	JB137888	Sequence 7 from Patent WO2012159774	3047-3083	2	0.946
NZ_CP027029_2	2.57\|364773\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364773-364809	37	MN689509	Lactococcus phage CHPC1175, complete genome	29544-29580	2	0.946
NZ_CP027029_2	2.57\|364773\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364773-364809	37	MK448735	Streptococcus phage Javan349, complete genome	11483-11519	2	0.946
NZ_CP027029_2	2.40\|363670\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363670-363705	36	MH341451	Listeria phage PSU-VKH-LP019, complete genome	32668-32703	3	0.917
NZ_CP027029_2	2.40\|363670\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363670-363705	36	KP399677	Listeria phage vB_LmoS_188, complete genome	32868-32903	3	0.917
NZ_CP027029_2	2.40\|363670\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363670-363705	36	KP399678	Listeria phage vB_LmoS_293, complete genome	34105-34140	3	0.917
NZ_CP027029_2	2.40\|363670\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363670-363705	36	KP399678	Listeria phage vB_LmoS_293, complete genome	35152-35187	3	0.917
NZ_CP027029_2	2.45\|363996\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363996-364032	37	KJ094026	Listeria phage LP-032 contig 3, partial genome	12567-12603	3	0.919
NZ_CP027029_2	2.45\|363996\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363996-364032	37	NC_021787	Listeria phage LP-037, complete genome	2448-2484	3	0.919
NZ_CP027029_2	2.45\|363996\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363996-364032	37	JX442241	Listeria phage P70, complete genome	51699-51735	3	0.919
NZ_CP027029_2	2.45\|363996\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363996-364032	37	KJ094020	Listeria phage LP-026, complete genome	28599-28635	3	0.919
NZ_CP027029_2	2.47\|364126\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364126-364161	36	JB137888	Sequence 7 from Patent WO2012159774	4301-4336	3	0.917
NZ_CP027029_2	2.47\|364126\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364126-364161	36	KJ094026	Listeria phage LP-032 contig 3, partial genome	13818-13853	3	0.917
NZ_CP027029_2	2.47\|364126\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364126-364161	36	KJ094020	Listeria phage LP-026, complete genome	27349-27384	3	0.917
NZ_CP027029_2	2.13\|361908\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	361908-361942	35	MH299806	Listeria phage LP-KV022, complete genome	51195-51229	4	0.886
NZ_CP027029_2	2.13\|361908\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	361908-361942	35	JB137888	Sequence 7 from Patent WO2012159774	2118-2152	4	0.886
NZ_CP027029_2	2.13\|361908\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	361908-361942	35	MN114083	Listeria phage LP-013, complete genome	46716-46750	4	0.886
NZ_CP027029_2	2.13\|361908\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	361908-361942	35	NC_021785	Listeria phage LP-110, complete genome	8913-8947	4	0.886
NZ_CP027029_2	2.13\|361908\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	361908-361942	35	KJ094021	Listeria phage LP-114, complete genome	36721-36755	4	0.886
NZ_CP027029_2	2.13\|361908\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	361908-361942	35	MN114082	Listeria phage LP-010, complete genome	46001-46035	4	0.886
NZ_CP027029_2	2.24\|362632\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362632-362666	35	KJ094022	Listeria phage LP-030-3, complete genome	27891-27925	4	0.886
NZ_CP027029_2	2.42\|363801\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363801-363835	35	KJ094026	Listeria phage LP-032 contig 3, partial genome	11034-11068	4	0.886
NZ_CP027029_2	2.42\|363801\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363801-363835	35	KJ094020	Listeria phage LP-026, complete genome	30134-30168	4	0.886
NZ_CP027029_2	2.49\|364256\|37\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364256-364292	37	NC_021539	Listeria phage LP-030-2, complete genome	31281-31317	4	0.892
NZ_CP027029_1	1.9\|344546\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344546-344581	36	JN700520	Staphylococcus phage StB12, complete genome	6832-6867	5	0.861
NZ_CP027029_2	2.13\|361908\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	361908-361942	35	NC_021787	Listeria phage LP-037, complete genome	3379-3413	5	0.857
NZ_CP027029_1	1.2\|344090\|42\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344090-344131	42	MN114083	Listeria phage LP-013, complete genome	44286-44327	6	0.857
NZ_CP027029_1	1.2\|344090\|42\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344090-344131	42	MN128593	Listeria phage LP-031, complete genome	43519-43560	6	0.857
NZ_CP027029_1	1.2\|344090\|42\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344090-344131	42	JX442241	Listeria phage P70, complete genome	50135-50176	6	0.857
NZ_CP027029_1	1.2\|344090\|42\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344090-344131	42	KJ094021	Listeria phage LP-114, complete genome	33960-34001	6	0.857
NZ_CP027029_1	1.2\|344090\|42\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344090-344131	42	MN114082	Listeria phage LP-010, complete genome	43509-43550	6	0.857
NZ_CP027029_2	2.58\|364839\|35\|NZ_CP027029\|CRISPRCasFinder,CRT	364839-364873	35	MN694189	Marine virus AFVG_250M578, complete genome	47879-47913	6	0.829
NZ_CP027029_1	1.2\|344090\|42\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344090-344131	42	MH299806	Listeria phage LP-KV022, complete genome	48765-48806	7	0.833
NZ_CP027029_1	1.2\|344090\|42\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344090-344131	42	JB137888	Sequence 7 from Patent WO2012159774	4606-4647	7	0.833
NZ_CP027029_1	1.2\|344090\|42\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344090-344131	42	NC_021785	Listeria phage LP-110, complete genome	6483-6524	7	0.833
NZ_CP027029_1	1.2\|344090\|42\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344090-344131	42	KJ094026	Listeria phage LP-032 contig 3, partial genome	14123-14164	7	0.833
NZ_CP027029_1	1.2\|344090\|42\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344090-344131	42	NC_021787	Listeria phage LP-037, complete genome	949-990	7	0.833
NZ_CP027029_1	1.2\|344090\|42\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344090-344131	42	MN904502	Listeria phage LP-018, complete genome	43740-43781	7	0.833
NZ_CP027029_1	1.2\|344090\|42\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344090-344131	42	KJ094020	Listeria phage LP-026, complete genome	27038-27079	7	0.833
NZ_CP027029_2	2.9\|361647\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	361647-361682	36	MN114083	Listeria phage LP-013, complete genome	48000-48035	7	0.806
NZ_CP027029_2	2.9\|361647\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	361647-361682	36	MN114082	Listeria phage LP-010, complete genome	47285-47320	7	0.806
NZ_CP027029_1	1.9\|344546\|36\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344546-344581	36	MW084976	Bacillus phage Kirov, complete genome	27565-27600	8	0.778
NZ_CP027029_2	2.22\|362505\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	362505-362539	35	MN693074	Marine virus AFVG_25M380, complete genome	29085-29119	8	0.771
NZ_CP027029_2	2.32\|363152\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363152-363186	35	NZ_MF547664	Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence	23518-23552	8	0.771
NZ_CP027029_2	2.42\|363801\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363801-363835	35	AP014248	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S34-C282, * SEQUENCING IN PROGRESS *	2516-2550	9	0.743
NZ_CP027029_2	2.51\|364387\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364387-364421	35	NZ_CP043831	Bacillus sp. BS98 plasmid unnamed1	257925-257959	9	0.743
NZ_CP027029_2	2.52\|364451\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	364451-364485	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	491525-491559	9	0.743
NZ_CP027029_2	2.58\|364839\|35\|NZ_CP027029\|CRISPRCasFinder,CRT	364839-364873	35	MK448625	Streptococcus satellite phage Javan738, complete genome	5960-5994	9	0.743
NZ_CP027029_2	2.58\|364839\|35\|NZ_CP027029\|CRISPRCasFinder,CRT	364839-364873	35	MK448449	Streptococcus satellite phage Javan356, complete genome	4490-4524	9	0.743
NZ_CP027029_2	2.58\|364839\|35\|NZ_CP027029\|CRISPRCasFinder,CRT	364839-364873	35	MK448636	Streptococcus satellite phage Javan749, complete genome	6112-6146	9	0.743
NZ_CP027029_2	2.58\|364839\|35\|NZ_CP027029\|CRISPRCasFinder,CRT	364839-364873	35	NZ_CP045037	Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence	34734-34768	9	0.743
NZ_CP027029_2	2.58\|364839\|35\|NZ_CP027029\|CRISPRCasFinder,CRT	364839-364873	35	NZ_CP018177	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence	11325-11359	9	0.743
NZ_CP027029_2	2.58\|364839\|35\|NZ_CP027029\|CRISPRCasFinder,CRT	364839-364873	35	NZ_CP018181	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence	63608-63642	9	0.743
NZ_CP027029_2	2.42\|363801\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363801-363835	35	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	1496861-1496895	10	0.714
NZ_CP027029_2	2.42\|363801\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363801-363835	35	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	1680253-1680287	10	0.714
NZ_CP027029_2	2.42\|363801\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363801-363835	35	NZ_CP046510	Erwinia sp. J780 plasmid pla1, complete sequence	17274-17308	10	0.714
NZ_CP027029_2	2.42\|363801\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363801-363835	35	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	79653-79687	10	0.714
NZ_CP027029_1	1.10\|344611\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344611-344645	35	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	130632-130666	11	0.686
NZ_CP027029_1	1.10\|344611\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344611-344645	35	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	17622-17656	11	0.686
NZ_CP027029_1	1.10\|344611\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344611-344645	35	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	31860-31894	11	0.686
NZ_CP027029_1	1.10\|344611\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	344611-344645	35	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	338888-338922	11	0.686
NZ_CP027029_2	2.32\|363152\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363152-363186	35	AP022644	Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence	47741-47775	11	0.686
NZ_CP027029_2	2.32\|363152\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363152-363186	35	NZ_CP012101	Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence	203066-203100	11	0.686
NZ_CP027029_2	2.32\|363152\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363152-363186	35	NZ_CP012103	Bacillus thuringiensis strain HS18-1 plasmid pHS18-4, complete sequence	37712-37746	11	0.686
NZ_CP027029_2	2.32\|363152\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363152-363186	35	NZ_CP031072	Bacillus mycoides strain BPN401 plasmid pl395, complete sequence	369457-369491	11	0.686
NZ_CP027029_2	2.32\|363152\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363152-363186	35	NZ_CP013276	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-1-360K, complete sequence	346229-346263	11	0.686
NZ_CP027029_2	2.32\|363152\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363152-363186	35	NZ_CP039722	Bacillus thuringiensis strain BT-59 plasmid p1, complete sequence	124018-124052	11	0.686
NZ_CP027029_2	2.32\|363152\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363152-363186	35	CP024686	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence	308509-308543	11	0.686
NZ_CP027029_2	2.32\|363152\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363152-363186	35	NC_018687	Bacillus thuringiensis MC28 plasmid pMC189, complete sequence	2072-2106	11	0.686
NZ_CP027029_2	2.32\|363152\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363152-363186	35	NZ_CP009349	Bacillus thuringiensis HD1002 plasmid 1, complete sequence	62669-62703	11	0.686
NZ_CP027029_2	2.32\|363152\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363152-363186	35	NZ_CP045023	Bacillus thuringiensis strain JW-1 plasmid p1, complete sequence	346275-346309	11	0.686
NZ_CP027029_2	2.42\|363801\|35\|NZ_CP027029\|PILER-CR,CRISPRCasFinder,CRT	363801-363835	35	NC_048106	Synechococcus phage S-CBWM1, complete genome	44408-44442	11	0.686

1. spacer 1.4|344226|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 0, identity: 1.0

acagatcaaactccggaagggtgattgtaaatggc	CRISPR spacer
acagatcaaactccggaagggtgattgtaaatggc	Protospacer
***********************************

2. spacer 1.4|344226|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

acagatcaaactccggaagggtgattgtaaatggc	CRISPR spacer
acagatcaaactccggaagggtgattgtaaatggc	Protospacer
***********************************

3. spacer 1.4|344226|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

acagatcaaactccggaagggtgattgtaaatggc	CRISPR spacer
acagatcaaactccggaagggtgattgtaaatggc	Protospacer
***********************************

4. spacer 1.8|344482|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 0, identity: 1.0

acagatcaaactccggaagggtgattgtaaatggc	CRISPR spacer
acagatcaaactccggaagggtgattgtaaatggc	Protospacer
***********************************

5. spacer 1.8|344482|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

acagatcaaactccggaagggtgattgtaaatggc	CRISPR spacer
acagatcaaactccggaagggtgattgtaaatggc	Protospacer
***********************************

6. spacer 1.8|344482|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

acagatcaaactccggaagggtgattgtaaatggc	CRISPR spacer
acagatcaaactccggaagggtgattgtaaatggc	Protospacer
***********************************

7. spacer 1.9|344546|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaa	Protospacer
************************************

8. spacer 1.9|344546|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 0, identity: 1.0

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaa	Protospacer
************************************

9. spacer 1.9|344546|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaa	Protospacer
************************************

10. spacer 1.10|344611|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

tttgttgaatcaacggatatagattttacaatttc	CRISPR spacer
tttgttgaatcaacggatatagattttacaatttc	Protospacer
***********************************

11. spacer 2.10|361712|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 0, identity: 1.0

agagtttccagctgtaaggccagatattgataatttc	CRISPR spacer
agagtttccagctgtaaggccagatattgataatttc	Protospacer
*************************************

12. spacer 2.23|362569|34|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

atactaaaacttcgctcattttccgcaactcctt	CRISPR spacer
atactaaaacttcgctcattttccgcaactcctt	Protospacer
**********************************

13. spacer 2.23|362569|34|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

atactaaaacttcgctcattttccgcaactcctt	CRISPR spacer
atactaaaacttcgctcattttccgcaactcctt	Protospacer
**********************************

14. spacer 2.23|362569|34|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 0, identity: 1.0

atactaaaacttcgctcattttccgcaactcctt	CRISPR spacer
atactaaaacttcgctcattttccgcaactcctt	Protospacer
**********************************

15. spacer 2.24|362632|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 0, identity: 1.0

ttaagaaatatgattgattctctggatatcacttt	CRISPR spacer
ttaagaaatatgattgattctctggatatcacttt	Protospacer
***********************************

16. spacer 2.24|362632|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

ttaagaaatatgattgattctctggatatcacttt	CRISPR spacer
ttaagaaatatgattgattctctggatatcacttt	Protospacer
***********************************

17. spacer 2.25|362696|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

cctccacaatcactcggctttcttcgtctttatcgac	CRISPR spacer
cctccacaatcactcggctttcttcgtctttatcgac	Protospacer
*************************************

18. spacer 2.25|362696|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

cctccacaatcactcggctttcttcgtctttatcgac	CRISPR spacer
cctccacaatcactcggctttcttcgtctttatcgac	Protospacer
*************************************

19. spacer 2.25|362696|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

cctccacaatcactcggctttcttcgtctttatcgac	CRISPR spacer
cctccacaatcactcggctttcttcgtctttatcgac	Protospacer
*************************************

20. spacer 2.27|362827|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

gtcgctagagctaaaaaatggatagaggaacaacaag	CRISPR spacer
gtcgctagagctaaaaaatggatagaggaacaacaag	Protospacer
*************************************

21. spacer 2.44|363931|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 0, identity: 1.0

gttgaaaagcgcaccattgttttaatttttttaatt	CRISPR spacer
gttgaaaagcgcaccattgttttaatttttttaatt	Protospacer
************************************

22. spacer 2.44|363931|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 0, identity: 1.0

gttgaaaagcgcaccattgttttaatttttttaatt	CRISPR spacer
gttgaaaagcgcaccattgttttaatttttttaatt	Protospacer
************************************

23. spacer 2.44|363931|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

gttgaaaagcgcaccattgttttaatttttttaatt	CRISPR spacer
gttgaaaagcgcaccattgttttaatttttttaatt	Protospacer
************************************

24. spacer 2.45|363996|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 0, identity: 1.0

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcggactgacg	Protospacer
*************************************

25. spacer 2.45|363996|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 0, identity: 1.0

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcggactgacg	Protospacer
*************************************

26. spacer 2.45|363996|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 0, identity: 1.0

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcggactgacg	Protospacer
*************************************

27. spacer 2.45|363996|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 0, identity: 1.0

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcggactgacg	Protospacer
*************************************

28. spacer 2.45|363996|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 0, identity: 1.0

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcggactgacg	Protospacer
*************************************

29. spacer 2.45|363996|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 0, identity: 1.0

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcggactgacg	Protospacer
*************************************

30. spacer 2.45|363996|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 0, identity: 1.0

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcggactgacg	Protospacer
*************************************

31. spacer 2.49|364256|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 0, identity: 1.0

tcgttaatcataattgatgaaagtcatcatgtgttag	CRISPR spacer
tcgttaatcataattgatgaaagtcatcatgtgttag	Protospacer
*************************************

32. spacer 2.49|364256|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

tcgttaatcataattgatgaaagtcatcatgtgttag	CRISPR spacer
tcgttaatcataattgatgaaagtcatcatgtgttag	Protospacer
*************************************

33. spacer 1.6|344355|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 1, identity: 0.971

gcgatttttgtcaaagggacagcgatgggttacaa	CRISPR spacer
gcgatttttgtcaaaggaacagcgatgggttacaa	Protospacer
*****************.*****************

34. spacer 1.9|344546|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.972

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaatagattatgactatcaaattaa	Protospacer
****************.*******************

35. spacer 2.17|362173|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.973

atttaagtattaatgtttttaaaaagtttgatttatt	CRISPR spacer
atttaagtattaatgtttttaaaaagtctgatttatt	Protospacer
***************************.*********

36. spacer 2.17|362173|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 1, identity: 0.973

atttaagtattaatgtttttaaaaagtttgatttatt	CRISPR spacer
atttaagtattaatgtttttaaaaagtctgatttatt	Protospacer
***************************.*********

37. spacer 2.17|362173|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.973

atttaagtattaatgtttttaaaaagtttgatttatt	CRISPR spacer
atttaagtattaatgtttttaaaaagtctgatttatt	Protospacer
***************************.*********

38. spacer 2.22|362505|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 1, identity: 0.971

aaaattagcgttccaaaaataagacctgtcgcaac	CRISPR spacer
aaaattagcgttccaaaaattagacctgtcgcaac	Protospacer
******************** **************

39. spacer 2.22|362505|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 1, identity: 0.971

aaaattagcgttccaaaaataagacctgtcgcaac	CRISPR spacer
aaaattagcgttccaaaaattagacctgtcgcaac	Protospacer
******************** **************

40. spacer 2.25|362696|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 1, identity: 0.973

cctccacaatcactcggctttcttcgtctttatcgac	CRISPR spacer
cctccacaatcacacggctttcttcgtctttatcgac	Protospacer
************* ***********************

41. spacer 2.27|362827|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 1, identity: 0.973

gtcgctagagctaaaaaatggatagaggaacaacaag	CRISPR spacer
gtcgctagagctaaaaaatggattgaggaacaacaag	Protospacer
*********************** *************

42. spacer 2.27|362827|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 1, identity: 0.973

gtcgctagagctaaaaaatggatagaggaacaacaag	CRISPR spacer
gtcgctagagctaaaaaatggattgaggaacaacaag	Protospacer
*********************** *************

43. spacer 2.29|362958|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 1, identity: 0.971

acttgaaggacgtgcttcaaaatatttagttgcat	CRISPR spacer
gcttgaaggacgtgcttcaaaatatttagttgcat	Protospacer
.**********************************

44. spacer 2.31|363088|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 1, identity: 0.971

acattttgcacgcaccaagcttgacggtctgaaac	CRISPR spacer
acattttgcacgcaccacgcttgacggtctgaaac	Protospacer
***************** *****************

45. spacer 2.31|363088|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 1, identity: 0.971

acattttgcacgcaccaagcttgacggtctgaaac	CRISPR spacer
acattttgcacgcaccaagcttggcggtctgaaac	Protospacer
***********************.***********

46. spacer 2.31|363088|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 1, identity: 0.971

acattttgcacgcaccaagcttgacggtctgaaac	CRISPR spacer
acattttgcacgcaccacgcttgacggtctgaaac	Protospacer
***************** *****************

47. spacer 2.31|363088|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 1, identity: 0.971

acattttgcacgcaccaagcttgacggtctgaaac	CRISPR spacer
acattttgcacgcaccacgcttgacggtctgaaac	Protospacer
***************** *****************

48. spacer 2.31|363088|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 1, identity: 0.971

acattttgcacgcaccaagcttgacggtctgaaac	CRISPR spacer
acattttgcacgcaccacgcttgacggtctgaaac	Protospacer
***************** *****************

49. spacer 2.31|363088|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 1, identity: 0.971

acattttgcacgcaccaagcttgacggtctgaaac	CRISPR spacer
acattttgcacgcaccacgcttgacggtctgaaac	Protospacer
***************** *****************

50. spacer 2.31|363088|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 1, identity: 0.971

acattttgcacgcaccaagcttgacggtctgaaac	CRISPR spacer
acattttgcacgcaccacgcttgacggtctgaaac	Protospacer
***************** *****************

51. spacer 2.31|363088|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 1, identity: 0.971

acattttgcacgcaccaagcttgacggtctgaaac	CRISPR spacer
acattttgcacgcaccacgcttgacggtctgaaac	Protospacer
***************** *****************

52. spacer 2.31|363088|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 1, identity: 0.971

acattttgcacgcaccaagcttgacggtctgaaac	CRISPR spacer
acattttgcacgcaccacgcttgacggtctgaaac	Protospacer
***************** *****************

53. spacer 2.31|363088|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 1, identity: 0.971

acattttgcacgcaccaagcttgacggtctgaaac	CRISPR spacer
acattttgaacgcaccaagcttgacggtctgaaac	Protospacer
******** **************************

54. spacer 2.40|363670|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.972

ccagaaatggagtgcgcggttgattttggatttagc	CRISPR spacer
cccgaaatggagtgcgcggttgattttggatttagc	Protospacer
** *********************************

55. spacer 2.42|363801|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 1, identity: 0.971

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
aaaccagaaccagaaaaagaagttgtgaaagaaga	Protospacer
********.**************************

56. spacer 2.42|363801|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 1, identity: 0.971

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
aaaccagaaccagaaaaagaagttgtgaaagaaga	Protospacer
********.**************************

57. spacer 2.42|363801|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 1, identity: 0.971

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
aaaccagaaccagaaaaagaagttgtgaaagaaga	Protospacer
********.**************************

58. spacer 2.42|363801|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 1, identity: 0.971

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
aaaccagaaccagaaaaagaagttgtgaaagaaga	Protospacer
********.**************************

59. spacer 2.43|363865|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.973

acgtcacttgtttttgcctttgttttcgccctttcct	CRISPR spacer
acgtcacttgtttttgcctttgtttttgccctttcct	Protospacer
**************************.**********

60. spacer 2.44|363931|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.972

gttgaaaagcgcaccattgttttaatttttttaatt	CRISPR spacer
gttgaaaagcgcaccattgctttaatttttttaatt	Protospacer
*******************.****************

61. spacer 2.44|363931|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 1, identity: 0.972

gttgaaaagcgcaccattgttttaatttttttaatt	CRISPR spacer
gttgaaaagcgcaccattgttttaagttttttaatt	Protospacer
************************* **********

62. spacer 2.44|363931|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 1, identity: 0.972

gttgaaaagcgcaccattgttttaatttttttaatt	CRISPR spacer
gttgaaaagcgcaccattgctttaatttttttaatt	Protospacer
*******************.****************

63. spacer 2.48|364191|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

64. spacer 2.48|364191|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

65. spacer 2.48|364191|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094025 (Listeria phage LP-032 contig 2, partial genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

66. spacer 2.48|364191|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

67. spacer 2.48|364191|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

68. spacer 2.48|364191|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

69. spacer 2.48|364191|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

70. spacer 2.48|364191|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

71. spacer 2.48|364191|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

72. spacer 2.48|364191|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

73. spacer 2.48|364191|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

74. spacer 2.48|364191|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

75. spacer 2.49|364256|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 1, identity: 0.973

tcgttaatcataattgatgaaagtcatcatgtgttag	CRISPR spacer
tcattaatcataattgatgaaagtcatcatgtgttag	Protospacer
**.**********************************

76. spacer 2.57|364773|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KY705255 (Streptococcus phage P0095, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

77. spacer 2.57|364773|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KY705251 (Streptococcus phage P0091, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

78. spacer 2.57|364773|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KX879643 (Streptococcus phage CHPC1151, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

79. spacer 2.57|364773|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MK202161 (Streptococcus phage CHPC1282, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

80. spacer 2.57|364773|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KY705252 (Streptococcus phage P0092, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

81. spacer 2.57|364773|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MH937506 (Streptococcus phage CHPC1148, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

82. spacer 2.57|364773|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KY705253 (Streptococcus phage P0093, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

83. spacer 2.57|364773|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KY705254 (Streptococcus phage P0094, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

84. spacer 1.4|344226|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.943

acagatcaaactccggaagggtgattgtaaatggc	CRISPR spacer
gcagaacaaactccggaagggtgattgtaaatggc	Protospacer
.**** *****************************

85. spacer 1.6|344355|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 2, identity: 0.943

gcgatttttgtcaaagggacagcgatgggttacaa	CRISPR spacer
gcgatttttgtcaaaggaacggcgatgggttacaa	Protospacer
*****************.**.**************

86. spacer 1.8|344482|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.943

acagatcaaactccggaagggtgattgtaaatggc	CRISPR spacer
gcagaacaaactccggaagggtgattgtaaatggc	Protospacer
.**** *****************************

87. spacer 2.3|361257|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 2, identity: 0.943

tcaagctggtatgcactttttgaggtaagctattg	CRISPR spacer
tcaagttggtatgcacttttcgaggtaagctattg	Protospacer
*****.**************.**************

88. spacer 2.8|361582|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 2, identity: 0.944

tgtaactgcaaacgtctttccgcaaattcgtgtagt	CRISPR spacer
tgtaactgtaaacgtctttccacaaattcgtgtagt	Protospacer
********.************.**************

89. spacer 2.10|361712|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 2, identity: 0.946

agagtttccagctgtaaggccagatattgataatttc	CRISPR spacer
agagtttccagctgtaagaccagatattgataatttt	Protospacer
******************.*****************.

90. spacer 2.29|362958|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 2, identity: 0.943

acttgaaggacgtgcttcaaaatatttagttgcat	CRISPR spacer
gcttgaagggcgtgcttcaaaatatttagttgcat	Protospacer
.********.*************************

91. spacer 2.31|363088|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094026 (Listeria phage LP-032 contig 3, partial genome) position: , mismatch: 2, identity: 0.943

acattttgcacgcaccaagcttgacggtctgaaac	CRISPR spacer
acattttgaacgcaccaagcttgtcggtctgaaac	Protospacer
******** ************** ***********

92. spacer 2.31|363088|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 2, identity: 0.943

acattttgcacgcaccaagcttgacggtctgaaac	CRISPR spacer
acattttgaacgcaccaagcttgtcggtctgaaac	Protospacer
******** ************** ***********

93. spacer 2.34|363279|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 2, identity: 0.943

aaaaaaacaactgcgcaagaagggtatgagcaatt	CRISPR spacer
aaaaaaacaactatgcaagaagggtatgagcaatt	Protospacer
************..*********************

94. spacer 2.34|363279|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 2, identity: 0.943

aaaaaaacaactgcgcaagaagggtatgagcaatt	CRISPR spacer
aaaaaaacaactatgcaagaagggtatgagcaatt	Protospacer
************..*********************

95. spacer 2.41|363735|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 2, identity: 0.946

aagaacattagatgaacttaaagcgtctgttgaacaa	CRISPR spacer
aggaacattagatgagcttaaagcgtctgttgaacaa	Protospacer
*.*************.*********************

96. spacer 2.41|363735|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ535721 (Listeria phage List-36, complete genome) position: , mismatch: 2, identity: 0.946

aagaacattagatgaacttaaagcgtctgttgaacaa	CRISPR spacer
aggaacattagatgagcttaaagcgtctgttgaacaa	Protospacer
*.*************.*********************

97. spacer 2.42|363801|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 2, identity: 0.943

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
aaaccggaaccagaaaaagaagttgtgaaagaaga	Protospacer
*****.**.**************************

98. spacer 2.43|363865|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 2, identity: 0.946

acgtcacttgtttttgcctttgttttcgccctttcct	CRISPR spacer
acgtcgcttgtttttgcctttgtttttgccctttcct	Protospacer
*****.********************.**********

99. spacer 2.45|363996|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 2, identity: 0.946

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcgaactggcg	Protospacer
*****************************.****.**

100. spacer 2.57|364773|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN689509 (Lactococcus phage CHPC1175, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaaccgagaacgtgtgttcattatcggacatctta	Protospacer
****** *******.**********************

101. spacer 2.57|364773|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MK448735 (Streptococcus phage Javan349, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgggtgttcattgtcggacatctta	Protospacer
************** *********.************

102. spacer 2.40|363670|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 3, identity: 0.917

ccagaaatggagtgcgcggttgattttggatttagc	CRISPR spacer
cccgaaatggagtgcgcggttgattttggatttaat	Protospacer
** *******************************..

103. spacer 2.40|363670|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 3, identity: 0.917

ccagaaatggagtgcgcggttgattttggatttagc	CRISPR spacer
cccgaaatggagtgcgcggttgattttggatttaat	Protospacer
** *******************************..

104. spacer 2.40|363670|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 3, identity: 0.917

ccagaaatggagtgcgcggttgattttggatttagc	CRISPR spacer
cccgaaatggagtgcgcggttgattttggatttaat	Protospacer
** *******************************..

105. spacer 2.40|363670|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 3, identity: 0.917

ccagaaatggagtgcgcggttgattttggatttagc	CRISPR spacer
cccgaaatggagtgcgcggttgattttggatttaat	Protospacer
** *******************************..

106. spacer 2.45|363996|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094026 (Listeria phage LP-032 contig 3, partial genome) position: , mismatch: 3, identity: 0.919

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcgaattgatg	Protospacer
*****************************.*.***.*

107. spacer 2.45|363996|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 3, identity: 0.919

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcgaattgatg	Protospacer
*****************************.*.***.*

108. spacer 2.45|363996|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 3, identity: 0.919

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcgaattgatg	Protospacer
*****************************.*.***.*

109. spacer 2.45|363996|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 3, identity: 0.919

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcgaattgatg	Protospacer
*****************************.*.***.*

110. spacer 2.47|364126|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 3, identity: 0.917

taaccaagcattgccaaaaactcgtctgttgataat	CRISPR spacer
taaccaagcattgccaaaaattcctctgttgataaa	Protospacer
********************.** ***********

111. spacer 2.47|364126|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094026 (Listeria phage LP-032 contig 3, partial genome) position: , mismatch: 3, identity: 0.917

taaccaagcattgccaaaaactcgtctgttgataat	CRISPR spacer
tatccaagcattgccaaaaactcatctgttgataac	Protospacer
** ********************.***********.

112. spacer 2.47|364126|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 3, identity: 0.917

taaccaagcattgccaaaaactcgtctgttgataat	CRISPR spacer
tatccaagcattgccaaaaactcatctgttgataac	Protospacer
** ********************.***********.

113. spacer 2.13|361908|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 4, identity: 0.886

taaattgttaagcttgtcaacaacctgcaagaact	CRISPR spacer
cacattgttaaacttgtcaacaacctgccagaact	Protospacer
.* ********.**************** ******

114. spacer 2.13|361908|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 4, identity: 0.886

taaattgttaagcttgtcaacaacctgcaagaact	CRISPR spacer
cacattgttaaacttgtcaacaacctgccagaact	Protospacer
.* ********.**************** ******

115. spacer 2.13|361908|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 4, identity: 0.886

taaattgttaagcttgtcaacaacctgcaagaact	CRISPR spacer
cacattgttaaacttgtcaacaacctgccagaact	Protospacer
.* ********.**************** ******

116. spacer 2.13|361908|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 4, identity: 0.886

taaattgttaagcttgtcaacaacctgcaagaact	CRISPR spacer
cacattgttaaacttgtcaacaacctgccagaact	Protospacer
.* ********.**************** ******

117. spacer 2.13|361908|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 4, identity: 0.886

taaattgttaagcttgtcaacaacctgcaagaact	CRISPR spacer
cacattgttaaacttgtcaacaacctgccagaact	Protospacer
.* ********.**************** ******

118. spacer 2.13|361908|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 4, identity: 0.886

taaattgttaagcttgtcaacaacctgcaagaact	CRISPR spacer
cacattgttaaacttgtcaacaacctgccagaact	Protospacer
.* ********.**************** ******

119. spacer 2.24|362632|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 4, identity: 0.886

ttaagaaatatgattgattctctggatatcacttt	CRISPR spacer
ttgcgaaatatgattgattctcttgatataacttt	Protospacer
**. ******************* ***** *****

120. spacer 2.42|363801|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094026 (Listeria phage LP-032 contig 3, partial genome) position: , mismatch: 4, identity: 0.886

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
aaaccagaaccagaaaaagaagttgtgaaagagcc	Protospacer
********.***********************.

121. spacer 2.42|363801|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 4, identity: 0.886

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
aaaccagaaccagaaaaagaagttgtgaaagagcc	Protospacer
********.***********************.

122. spacer 2.49|364256|37|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 4, identity: 0.892

tcgttaatcataattgatgaaagtcatcatgtgttag	CRISPR spacer
gctttaatcattattgatgaaagtcatcatgtgctag	Protospacer
 * ******** *********************.***

123. spacer 1.9|344546|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to JN700520 (Staphylococcus phage StB12, complete genome) position: , mismatch: 5, identity: 0.861

aaaataggaggaaataaattatgact-atcaaattaa	CRISPR spacer
taaataggaggaagtaaataatgactaatcaaacta-	Protospacer
 ************.***** ****** ******.**

124. spacer 2.13|361908|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 5, identity: 0.857

taaattgttaagcttgtcaacaacctgcaagaact	CRISPR spacer
caccttgttaaacttgtcaacaacctgccagaact	Protospacer
.*  *******.**************** ******

125. spacer 1.2|344090|42|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 6, identity: 0.857

acacaaatatgaaaaaacttctattaaaagcaattccatcct	CRISPR spacer
acgataatatgaaacaacttctattaaaagcaattccaagct	Protospacer
**.  ********* ***********************  **

126. spacer 1.2|344090|42|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 6, identity: 0.857

acacaaatatgaaaaaacttctattaaaagcaattccatcct	CRISPR spacer
acgataatatgaaacaacttctattaaaagcaattccaagct	Protospacer
**.  ********* ***********************  **

127. spacer 1.2|344090|42|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 6, identity: 0.857

acacaaatatgaaaaaacttctattaaaagcaattccatcct	CRISPR spacer
acgataatatgaaacaacttctattaaaagcaattccaagct	Protospacer
**.  ********* ***********************  **

128. spacer 1.2|344090|42|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 6, identity: 0.857

acacaaatatgaaaaaacttctattaaaagcaattccatcct	CRISPR spacer
acgataatatgaaacaacttctattaaaagcaattccaagct	Protospacer
**.  ********* ***********************  **

129. spacer 1.2|344090|42|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 6, identity: 0.857

acacaaatatgaaaaaacttctattaaaagcaattccatcct	CRISPR spacer
acgataatatgaaacaacttctattaaaagcaattccaagct	Protospacer
**.  ********* ***********************  **

130. spacer 2.58|364839|35|NZ_CP027029|CRISPRCasFinder,CRT matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 6, identity: 0.829

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
taataaaaaatgagggcttagaaaatgaaaaaatt	Protospacer
*  *.*** ******.***************** *

131. spacer 1.2|344090|42|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 7, identity: 0.833

acacaaatatgaaaaaacttctattaaaagcaattccatcct	CRISPR spacer
acgataatatgaaacaacttctattaaaagctattccaagct	Protospacer
**.  ********* **************** ******  **

132. spacer 1.2|344090|42|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 7, identity: 0.833

acacaaatatgaaaaaacttctattaaaagcaattccatcct	CRISPR spacer
acgataatatgaaacaacttctattaaaagctattccaagct	Protospacer
**.  ********* **************** ******  **

133. spacer 1.2|344090|42|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 7, identity: 0.833

acacaaatatgaaaaaacttctattaaaagcaattccatcct	CRISPR spacer
acgataatatgaaacaacttctattaaaagctattccaagct	Protospacer
**.  ********* **************** ******  **

134. spacer 1.2|344090|42|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094026 (Listeria phage LP-032 contig 3, partial genome) position: , mismatch: 7, identity: 0.833

acacaaatatgaaaaaacttctattaaaagcaattccatcct	CRISPR spacer
acgataatatgaaacaacttctattaaaagctattccaagct	Protospacer
**.  ********* **************** ******  **

135. spacer 1.2|344090|42|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 7, identity: 0.833

acacaaatatgaaaaaacttctattaaaagcaattccatcct	CRISPR spacer
acgataatatgaaacaacttctattaaaagctattccaagct	Protospacer
**.  ********* **************** ******  **

136. spacer 1.2|344090|42|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 7, identity: 0.833

acacaaatatgaaaaaacttctattaaaagcaattccatcct	CRISPR spacer
acgataatatgaaacaacttctattaaaagctattccaagct	Protospacer
**.  ********* **************** ******  **

137. spacer 1.2|344090|42|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 7, identity: 0.833

acacaaatatgaaaaaacttctattaaaagcaattccatcct	CRISPR spacer
acgataatatgaaacaacttctattaaaagctattccaagct	Protospacer
**.  ********* **************** ******  **

138. spacer 2.9|361647|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 7, identity: 0.806

ttatccattccgtcatatccccacgcatctgttcca	CRISPR spacer
ttatccattccatcatatccccaagcattgttgcct	Protospacer
***********.*********** ****.  * **

139. spacer 2.9|361647|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 7, identity: 0.806

ttatccattccgtcatatccccacgcatctgttcca	CRISPR spacer
ttatccattccatcatatccccaagcattgttgcct	Protospacer
***********.*********** ****.  * **

140. spacer 1.9|344546|36|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 8, identity: 0.778

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
ttaataggaggaaataaataatggctatcgtaagaa	Protospacer
  ***************** ***.*****. *  **

141. spacer 2.22|362505|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to MN693074 (Marine virus AFVG_25M380, complete genome) position: , mismatch: 8, identity: 0.771

aaaattagcgttccaaaaataagacctgtcgcaac	CRISPR spacer
gaaattagcgttccaaaaataagaccatgggaagt	Protospacer
.*************************    * *..

142. spacer 2.32|363152|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 8, identity: 0.771

tttatctttatctatttctccag-taatagagcacg	CRISPR spacer
aatatctttatctatttctccagttatttgtgctt-	Protospacer
  ********************* ** * * ** .

143. spacer 2.42|363801|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to AP014248 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S34-C282, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.743

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
gaaccagaacccgaaaaagaagttgttattactga	Protospacer
.*******.** ************** *  .  **

144. spacer 2.51|364387|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043831 (Bacillus sp. BS98 plasmid unnamed1) position: , mismatch: 9, identity: 0.743

tttatcactcctatgcttttcttatttctgtaaat	CRISPR spacer
tttatcactcctatgctttttatatactcctaata	Protospacer
********************. *** ... ***

145. spacer 2.52|364451|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 9, identity: 0.743

gcttttttcaacaattttatcaccagatgtcatta	CRISPR spacer
agttttttcaacaattttatgaacagataattttt	Protospacer
. ****************** * *****. . **

146. spacer 2.58|364839|35|NZ_CP027029|CRISPRCasFinder,CRT matches to MK448625 (Streptococcus satellite phage Javan738, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

147. spacer 2.58|364839|35|NZ_CP027029|CRISPRCasFinder,CRT matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

148. spacer 2.58|364839|35|NZ_CP027029|CRISPRCasFinder,CRT matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtctgaactatgaggacttagaaagtgaagacctg	Protospacer
 *.**** ****************.****.*

149. spacer 2.58|364839|35|NZ_CP027029|CRISPRCasFinder,CRT matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

150. spacer 2.58|364839|35|NZ_CP027029|CRISPRCasFinder,CRT matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

151. spacer 2.58|364839|35|NZ_CP027029|CRISPRCasFinder,CRT matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

152. spacer 2.42|363801|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 10, identity: 0.714

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
gtagagcagccagaaaaagaagttgagaaagagac	Protospacer
. *  . ****************** ******..

153. spacer 2.42|363801|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 10, identity: 0.714

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
gtagagcagccagaaaaagaagttgagaaagagac	Protospacer
. *  . ****************** ******..

154. spacer 2.42|363801|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046510 (Erwinia sp. J780 plasmid pla1, complete sequence) position: , mismatch: 10, identity: 0.714

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
gatgatgagccagaaaatgaagttgtgaaagttcc	Protospacer
.*    *********** *************

155. spacer 2.42|363801|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 10, identity: 0.714

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
gtagagcagccagaaaaagaagttgagaaagagac	Protospacer
. *  . ****************** ******..

156. spacer 1.10|344611|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 11, identity: 0.686

tttgttgaatcaacggatatagattttacaatttc	CRISPR spacer
agaaaaaaatcaaccgatatagattttaaaatctt	Protospacer
   .  .******* ************* ***.*.

157. spacer 1.10|344611|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 11, identity: 0.686

tttgttgaatcaacggatatagattttacaatttc	CRISPR spacer
aagaaaaaatcaaccgatatagattttaaaatctt	Protospacer
   .  .******* ************* ***.*.

158. spacer 1.10|344611|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.686

tttgttgaatcaacggatatagattttacaatttc	CRISPR spacer
agaaaaaaatcaaccgatatagattttaaaatctt	Protospacer
   .  .******* ************* ***.*.

159. spacer 1.10|344611|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.686

tttgttgaatcaacggatatagattttacaatttc	CRISPR spacer
agaaaaaaatcaaccgatatagattttaaaatctt	Protospacer
   .  .******* ************* ***.*.

160. spacer 2.32|363152|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to AP022644 (Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

161. spacer 2.32|363152|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012101 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

162. spacer 2.32|363152|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012103 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-4, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

163. spacer 2.32|363152|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

164. spacer 2.32|363152|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013276 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-1-360K, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

165. spacer 2.32|363152|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039722 (Bacillus thuringiensis strain BT-59 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

166. spacer 2.32|363152|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to CP024686 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

167. spacer 2.32|363152|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_018687 (Bacillus thuringiensis MC28 plasmid pMC189, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

168. spacer 2.32|363152|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009349 (Bacillus thuringiensis HD1002 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

169. spacer 2.32|363152|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045023 (Bacillus thuringiensis strain JW-1 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

170. spacer 2.42|363801|35|NZ_CP027029|PILER-CR,CRISPRCasFinder,CRT matches to NC_048106 (Synechococcus phage S-CBWM1, complete genome) position: , mismatch: 11, identity: 0.686

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
ctaccagaggcagagaaagaagttgtgaggatgat	Protospacer
  ******* ****.*************... ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

943884 : 952842

Hokovirus(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721506.1\|943884_944268_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
WP_014601903.1\|944289_945273_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	2.4e-12	34.6
WP_069280886.1\|945287_946301_+	glycosyltransferase	A0A1V0SAH6	Catovirus	1.3e-10	32.0
WP_003721509.1\|946509_948000_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_014601905.1\|948011_948836_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	1.3e-67	52.6
WP_003721511.1\|948848_949157_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003721512.1\|949216_949621_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_014601906.1\|949749_951306_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.9e-17	28.1
WP_014601907.1\|951438_952842_+	hypothetical protein	Q38324	Lactococcus_phage	1.2e-17	25.7

DBSCAN-SWA_2

1083145 : 1142584

Bacillus_virus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014601953.1\|1083145_1084285_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003723563.1\|1084365_1084761_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|1084911_1085127_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014931391.1\|1085245_1085779_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003732795.1\|1085796_1086462_+	hypothetical protein	NA	NA	NA	NA
WP_003732796.1\|1086723_1087662_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|1087776_1089060_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|1089244_1090504_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_014601954.1\|1090622_1091189_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_009924619.1\|1091223_1091793_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003723889.1\|1091894_1092437_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_014601956.1\|1092446_1093310_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003723891.1\|1093306_1094092_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	3.0e-26	39.2
WP_003723892.1\|1094225_1095086_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_003732799.1\|1095357_1097436_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	3.2e-107	37.5
WP_010989721.1\|1097498_1098803_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_009911635.1\|1099085_1099988_+	tyrosine recombinase XerC	A0A097EYL9	Mycobacterium_phage	1.2e-13	28.6
WP_003724001.1\|1100008_1100548_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_014601958.1\|1100561_1101971_+\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	7.5e-44	27.8
WP_003726695.1\|1101991_1102771_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_003724129.1\|1102873_1103293_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003724130.1\|1103314_1103626_+	hypothetical protein	NA	NA	NA	NA
WP_009932949.1\|1103628_1104501_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003724132.1\|1104542_1105139_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003732802.1\|1105296_1105704_+	CoA-binding protein	NA	NA	NA	NA
WP_003723731.1\|1105884_1107852_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	6.7e-123	42.5
WP_014601961.1\|1107848_1110308_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	3.6e-102	31.9
WP_009913867.1\|1110390_1110858_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_014601962.1\|1111184_1112918_+	LapB repeat-containing protein	NA	NA	NA	NA
WP_014601963.1\|1113249_1115046_+	class 1 internalin InlK	NA	NA	NA	NA
WP_014601964.1\|1115079_1116948_-	acetyltransferase	B5WZU0	Pseudomonas_phage	6.5e-43	31.9
WP_012951577.1\|1117160_1117859_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	9.9e-13	32.4
WP_003723738.1\|1118091_1119768_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_012951578.1\|1119893_1120811_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003719566.1\|1120933_1121167_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_003733804.1\|1121277_1122501_+	GTPase HflX	NA	NA	NA	NA
WP_014601965.1\|1122493_1123720_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_003719570.1\|1123923_1124292_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003723435.1\|1124362_1125697_+	type I glutamate--ammonia ligase	A0A1V0SJ53	Klosneuvirus	2.0e-06	26.4
WP_003723436.1\|1125840_1127136_+	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	1.8e-145	61.6
WP_003723437.1\|1127179_1127701_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003723438.1\|1127730_1128345_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	9.3e-15	62.1
WP_003723439.1\|1128501_1128831_+	cell division suppressor protein YneA	NA	NA	NA	NA
WP_014601966.1\|1128922_1129150_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_014601967.1\|1129296_1131291_+	transketolase	NA	NA	NA	NA
WP_003723442.1\|1131511_1131751_+	YneF family protein	NA	NA	NA	NA
WP_003723443.1\|1131801_1132644_-	DUF2785 domain-containing protein	NA	NA	NA	NA
WP_014601968.1\|1132662_1133394_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	8.9e-81	59.1
WP_003723445.1\|1133415_1133922_-	ParB-like nuclease domain-containing protein	A0A220GKT8	Streptococcus_phage	4.0e-56	66.7
WP_003723446.1\|1133931_1135236_-	DUF3440 domain-containing protein	A0A220GKF8	Streptococcus_phage	9.5e-134	52.1
WP_010989732.1\|1135225_1136431_-	helicase SNF2	L0P6E9	Lactobacillus_phage	4.9e-92	47.1
WP_003723448.1\|1136408_1136783_-	hypothetical protein	NA	NA	NA	NA
WP_003723449.1\|1137075_1137804_+	UMP kinase	NA	NA	NA	NA
WP_003723450.1\|1137803_1138361_+	ribosome recycling factor	NA	NA	NA	NA
WP_003732812.1\|1138590_1139349_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	4.4e-22	42.1
WP_014600800.1\|1139362_1140151_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_014601969.1\|1140165_1141308_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_003723454.1\|1141321_1142584_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

DBSCAN-SWA_3

1648004 : 1656290

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722243.1\|1648004_1648571_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9
WP_014602075.1\|1648567_1649617_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.0e-61	43.2
WP_003722245.1\|1649635_1651063_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_014602076.1\|1651047_1653267_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.3e-159	41.2
WP_003733240.1\|1653259_1653943_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003722248.1\|1653946_1654192_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003733239.1\|1654203_1654917_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	2.7e-42	38.7
WP_014602077.1\|1654997_1656290_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0

DBSCAN-SWA_4

2260573 : 2268417

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722604.1\|2260573_2261545_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003722605.1\|2261552_2262521_-	YvcK family protein	A1IMD5	Streptococcus_phage	6.7e-68	43.3
WP_003722606.1\|2262522_2263398_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_014602231.1\|2263505_2265236_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.6e-173	53.1
WP_003734087.1\|2265277_2266339_-	galactose mutarotase	NA	NA	NA	NA
WP_014601137.1\|2266355_2267339_-	UDP-glucose 4-epimerase GalE	A0A1V0SG19	Hokovirus	1.6e-48	37.2
WP_003722610.1\|2267457_2268417_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

DBSCAN-SWA_5

2354877 : 2448784

108

Listeria_phage(82.35%)

tRNA,portal,protease,capsid,tail,holin,plate,integrase,terminase

attL 2439249:2439263|attR 2446991:2447005

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003723609.1\|2354877_2356548_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_003723610.1\|2356544_2356994_-	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_003723611.1\|2357071_2357725_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_003723612.1\|2357798_2357984_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_009924630.1\|2358018_2359341_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	2.6e-30	33.2
WP_009924631.1\|2359355_2360192_-	lipoyl-[GcvH]:protein N-lipoyltransferase	NA	NA	NA	NA
WP_003723615.1\|2360509_2360710_-	hypothetical protein	NA	NA	NA	NA
WP_003729275.1\|2360732_2361056_-	YxeA family protein	NA	NA	NA	NA
WP_023552515.1\|2361194_2362871_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003726112.1\|2363005_2363620_-	SdpI family protein	NA	NA	NA	NA
WP_009926161.1\|2363643_2364276_-	nicotinamidase	NA	NA	NA	NA
WP_003723621.1\|2364276_2364801_-	dihydrofolate reductase	NA	NA	NA	NA
WP_012952036.1\|2364803_2365802_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_003723623.1\|2365898_2366171_-	hypothetical protein	NA	NA	NA	NA
WP_003723624.1\|2366219_2367131_-	cation transporter	NA	NA	NA	NA
WP_023552517.1\|2367256_2371849_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_003733264.1\|2372069_2372897_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_003733263.1\|2373011_2373887_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003723278.1\|2373897_2374191_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_014601160.1\|2374223_2374385_-	hypothetical protein	NA	NA	NA	NA
WP_014601161.1\|2374453_2375122_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.8e-38	42.0
WP_010990019.1\|2375121_2376210_-	ABC transporter permease	NA	NA	NA	NA
WP_014602241.1\|2376288_2377668_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.7e-56	47.1
WP_012952041.1\|2377664_2378342_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.4e-58	48.0
WP_014602242.1\|2378388_2379174_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_014602243.1\|2379235_2379712_-	DUF1641 domain-containing protein	NA	NA	NA	NA
WP_014602244.1\|2379711_2382699_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_009931305.1\|2383197_2384040_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA
WP_003733258.1\|2384087_2385569_-	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_014602245.1\|2385669_2386557_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_096818815.1\|2386932_2387130_-	hypothetical protein	A8ATC6	Listeria_phage	1.3e-23	96.5
WP_070213373.1\|2387126_2387360_-	hypothetical protein	A0A059T6E1	Listeria_phage	5.6e-37	97.4
WP_003731277.1\|2387661_2387895_+	hypothetical protein	A8ATW9	Listeria_phage	4.3e-13	100.0
WP_003731276.1\|2387926_2388178_+	hypothetical protein	A8ATW8	Listeria_phage	2.0e-40	100.0
WP_003722518.1\|2388178_2388628_+	anti-CRISPR protein AcrIIA1	A8ATW7	Listeria_phage	2.4e-76	100.0
WP_096818819.1\|2388652_2389150_+	AP2 domain-containing protein	A8ATW6	Listeria_phage	2.8e-86	93.9
WP_010989943.1\|2389226_2389778_-	hypothetical protein	A8ASL6	Listeria_phage	7.4e-96	95.6
WP_033919168.1\|2390271_2391117_-	peptidase M15	A0A059T7Y8	Listeria_phage	2.6e-140	95.8
WP_003722522.1\|2391116_2391398_-\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
WP_003722523.1\|2391410_2391776_-	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
WP_003722524.1\|2391803_2391962_-	hypothetical protein	Q9T1A1	Listeria_phage	6.0e-19	100.0
WP_003722525.1\|2391966_2392284_-	hypothetical protein	Q9T1A2	Listeria_phage	6.2e-55	100.0
WP_003722526.1\|2392295_2393369_-\|plate	phage baseplate upper protein	Q9T1A3	Listeria_phage	4.5e-198	100.0
WP_003722527.1\|2393368_2394397_-	hypothetical protein	Q9T1A4	Listeria_phage	4.6e-192	100.0
WP_105198770.1\|2394397_2395423_-	hypothetical protein	Q9T1A5	Listeria_phage	2.6e-195	96.8
WP_039379198.1\|2395431_2396250_-\|tail	phage tail family protein	Q9T1A6	Listeria_phage	5.0e-149	93.0
WP_061106467.1\|2396251_2401636_-	tape measure protein	Q9T1A7	Listeria_phage	0.0e+00	87.8
WP_061105080.1\|2401646_2402246_-	hypothetical protein	A0A0B5CTW0	Listeria_phage	6.2e-72	68.5
WP_061105081.1\|2402251_2402674_-\|tail	phage tail assembly chaperone	Q9T1A9	Listeria_phage	1.9e-67	95.0
WP_077948122.1\|2402728_2403061_-	Ig domain-containing protein	Q9T1B0	Listeria_phage	1.2e-48	97.3
WP_061106468.1\|2402990_2403428_-	hypothetical protein	A0A0B5CYN3	Listeria_phage	4.2e-78	99.3
WP_061105084.1\|2403430_2403838_-\|capsid	minor capsid protein	A0A0B5CU21	Listeria_phage	2.2e-65	97.0
WP_031644586.1\|2403837_2404176_-	hypothetical protein	Q9T1B3	Listeria_phage	8.3e-58	99.1
WP_105198771.1\|2404175_2404538_-\|capsid	minor capsid protein	Q9T1B4	Listeria_phage	8.6e-61	95.0
WP_009925044.1\|2404537_2404933_-	hypothetical protein	A0A059T5E3	Listeria_phage	2.2e-54	82.4
WP_009925045.1\|2404934_2405093_-	hypothetical protein	A8ASJ7	Listeria_phage	9.6e-17	92.3
WP_031645714.1\|2405092_2405992_-\|capsid	phage major capsid protein	Q9T1B7	Listeria_phage	1.0e-166	99.7
WP_009925047.1\|2406015_2406585_-	scaffold protein	A0A0B5CTV7	Listeria_phage	1.2e-80	97.9
WP_039381673.1\|2406663_2407803_-	hypothetical protein	A8ASJ4	Listeria_phage	1.3e-200	96.0
WP_105198772.1\|2407803_2409573_-\|portal	phage portal protein	A8ASJ3	Listeria_phage	2.1e-261	90.6
WP_105198781.1\|2409585_2410917_-\|terminase	PBSX family phage terminase large subunit	A8ASJ2	Listeria_phage	2.5e-251	94.4
WP_105198773.1\|2410885_2411428_-\|terminase	terminase small subunit	A0A0B5CU16	Listeria_phage	9.8e-85	94.9
WP_105198774.1\|2411456_2411900_-	hypothetical protein	A8AU03	Listeria_phage	1.8e-12	35.9
WP_055310982.1\|2412368_2412803_-	hypothetical protein	A8ASQ1	Listeria_phage	2.1e-69	90.3
WP_003753514.1\|2412966_2413350_-	DUF2481 family protein	A8ASP8	Listeria_phage	6.6e-35	56.7
WP_010991162.1\|2413353_2413758_-	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	1.7e-57	83.6
WP_003731826.1\|2413702_2413885_-	hypothetical protein	A8ASP6	Listeria_phage	3.0e-14	77.6
WP_096818751.1\|2413906_2414389_-	single-stranded DNA-binding protein	A8ASP5	Listeria_phage	1.1e-71	85.6
WP_099771136.1\|2414385_2414688_-	hypothetical protein	R4IBL7	Listeria_phage	8.0e-20	92.7
WP_014930202.1\|2414845_2415307_-	hypothetical protein	D9J0I6	Brochothrix_phage	2.6e-14	31.3
WP_096818748.1\|2415303_2415687_-	hypothetical protein	A0A0B5CYR4	Listeria_phage	1.2e-36	59.7
WP_003722558.1\|2415683_2415881_-	hypothetical protein	A0A0B5CU49	Listeria_phage	2.0e-27	95.4
WP_096818745.1\|2415883_2416441_-	DUF1642 domain-containing protein	A8ATD8	Listeria_phage	1.6e-45	50.0
WP_096818743.1\|2416437_2417250_-	DNA adenine methylase	Q8W5X3	Listeria_phage	9.7e-153	96.3
WP_096818740.1\|2417246_2418221_-	DnaD domain protein	A8ASN4	Listeria_phage	3.5e-165	92.3
WP_012951956.1\|2418237_2418897_-	ERF family protein	A8ASN3	Listeria_phage	5.3e-93	94.1
WP_012951957.1\|2418902_2419379_-	siphovirus Gp157 family protein	A0A059T5F1	Listeria_phage	9.5e-76	100.0
WP_003734953.1\|2419375_2419570_-	hypothetical protein	A0A059T6E8	Listeria_phage	1.6e-29	100.0
WP_096818737.1\|2419875_2420064_-	hypothetical protein	Q9T175	Listeria_phage	3.1e-22	82.3
WP_003733681.1\|2420166_2420373_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_105198775.1\|2420362_2420893_-	hypothetical protein	A8ATY1	Listeria_phage	1.8e-78	88.4
WP_105198776.1\|2421012_2421801_-	phage antirepressor Ant	Q9T178	Listeria_phage	1.6e-136	93.5
WP_103687835.1\|2421865_2422480_+	hypothetical protein	NA	NA	NA	NA
WP_105198777.1\|2422960_2423245_-	hypothetical protein	A0A0B5D168	Listeria_phage	1.7e-40	85.1
WP_003731220.1\|2423248_2423500_-	helix-turn-helix transcriptional regulator	A8ATX6	Listeria_phage	7.6e-40	100.0
WP_026750223.1\|2423648_2423957_+	helix-turn-helix transcriptional regulator	A8ATX5	Listeria_phage	2.7e-47	99.0
WP_012951966.1\|2423987_2424479_+	hypothetical protein	A8ATX4	Listeria_phage	2.9e-91	99.4
WP_003727739.1\|2424501_2424720_+	zinc-ribbon domain-containing protein	A0A059T6E3	Listeria_phage	5.4e-34	100.0
WP_039379299.1\|2424734_2425436_+	hypothetical protein	A0A0B5D125	Listeria_phage	3.9e-86	89.7
WP_021496297.1\|2425456_2426137_+	hypothetical protein	NA	NA	NA	NA
WP_031644755.1\|2426201_2426408_+	hypothetical protein	NA	NA	NA	NA
WP_061108232.1\|2426407_2427583_+\|integrase	site-specific integrase	S5MNZ2	Brevibacillus_phage	1.1e-51	31.8
WP_003733022.1\|2433300_2434329_-	Mrp/NBP35 family ATP-binding protein	NA	NA	NA	NA
WP_014602246.1\|2434597_2436124_+	GW domain-containing glycosaminoglycan-binding protein	A0A0K2CP65	Brevibacillus_phage	6.9e-27	48.7
WP_014602247.1\|2436165_2437017_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.0e-48	38.3
WP_009932866.1\|2437038_2437461_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_014602248.1\|2437582_2437942_-	hypothetical protein	NA	NA	NA	NA
WP_010990027.1\|2438185_2439055_+	DUF4969 domain-containing protein	NA	NA	NA	NA
2439249:2439263	attL	NA	NA	NA	NA
WP_002372037.1\|2439803_2440211_-	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	3.6e-31	48.9
WP_002372035.1\|2440568_2440928_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002372033.1\|2440924_2443042_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.7e-245	64.6
WP_039388397.1\|2443262_2444075_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039388394.1\|2444236_2445493_+	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	3.0e-44	29.5
WP_002372025.1\|2445582_2445780_+	hypothetical protein	NA	NA	NA	NA
WP_061107429.1\|2445885_2446935_+\|integrase	site-specific integrase	Q4ZC42	Staphylococcus_virus	9.6e-20	27.3
WP_003723652.1\|2446991_2447384_-	30S ribosomal protein S9	NA	NA	NA	NA
2446991:2447005	attR	NA	NA	NA	NA
WP_003727703.1\|2447405_2447843_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_003733032.1\|2448037_2448784_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA

DBSCAN-SWA_6

2825140 : 2831665

Listeria_phage(33.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014601579.1\|2825140_2825593_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	5.2e-31	47.9
WP_003721740.1\|2825598_2825934_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003732219.1\|2826150_2826579_+	hypothetical protein	NA	NA	NA	NA
WP_003732220.1\|2826590_2827007_+	hypothetical protein	A8ASQ1	Listeria_phage	1.3e-20	39.3
WP_012952083.1\|2827284_2827674_+	DUF5072 domain-containing protein	NA	NA	NA	NA
WP_003721744.1\|2827686_2828199_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_014601580.1\|2828246_2828549_+	hypothetical protein	NA	NA	NA	NA
WP_014601581.1\|2828590_2828995_+	hypothetical protein	NA	NA	NA	NA
WP_014601582.1\|2828981_2830850_+	membrane protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_014601583.1\|2830846_2831665_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	9.4e-39	35.0

Anti-CRISPR protein detection

Acr_ID: NZ_CP027029.1|WP_003731276.1|2387926_2388178_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP027029.1|WP_003731276.1|2387926_2388178_+|hypothetical-protein

2387926_2388178_+

83 aa aa

AcrIIA12

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3641\|WP_003731276.1\|AcrIIA12\|II-A\|Verified\|Listeria-monocytogenes	1.0	1	1.0

2354877-2448784

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP027029

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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