CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_QEJI01000066	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_67, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000025	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_26, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000005	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_6, whole genome shotgun sequence	0 crisprs	cas3	0	0	0	0
NZ_QEJI01000102	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_103, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000153	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_157, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000105	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_106, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000083	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_84, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000156	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_160, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000029	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_30, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000180	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_186, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000008	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_9, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000049	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_50, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000107	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_108, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000001	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_2, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000167	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_171, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000151	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_155, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000098	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_99, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000186	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_193, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000177	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_181, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000063	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_64, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000190	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_197, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000104	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_105, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000021	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_22, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	0	0
NZ_QEJI01000024	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_25, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000133	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_135, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000069	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_70, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000139	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_142, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000138	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_141, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000146	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_150, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000162	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_166, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000099	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_100, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000130	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_131, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000141	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_145, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000129	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_130, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000056	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_57, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000154	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_158, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000131	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_132, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000197	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_204, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000017	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_18, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000182	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_189, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000122	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_123, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000095	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_96, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000187	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_194, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000055	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_56, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000178	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_183, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000143	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_147, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000019	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_20, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	0	0
NZ_QEJI01000145	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_149, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000007	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_8, whole genome shotgun sequence	0 crisprs	DinG	0	0	1	2
NZ_QEJI01000071	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_72, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000023	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_24, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_QEJI01000166	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_170, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000041	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_42, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000073	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_74, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000112	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_113, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000170	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_174, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000134	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_136, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000152	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_156, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000079	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_80, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000085	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_86, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000026	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_27, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000096	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_97, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000004	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_5, whole genome shotgun sequence	0 crisprs	cas3	0	0	0	0
NZ_QEJI01000173	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_177, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000142	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_146, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000038	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_39, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000016	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_17, whole genome shotgun sequence	0 crisprs	csa3	0	0	0	0
NZ_QEJI01000195	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_202, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000091	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_92, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000022	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_23, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000194	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_201, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000052	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_53, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000053	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_54, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000193	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_200, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000191	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_198, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000035	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_36, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000074	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_75, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000081	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_82, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000174	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_178, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000179	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_184, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000077	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_78, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000183	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_190, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000200	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_207, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000101	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_102, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000172	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_176, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000037	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_38, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000062	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000057	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_58, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000155	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_159, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000030	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_31, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000126	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_127, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000076	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_77, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000039	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_40, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000064	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_65, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000185	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_192, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000015	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_16, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_QEJI01000110	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_111, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000164	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_168, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000075	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_76, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000011	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_12, whole genome shotgun sequence	0 crisprs	NA	0	0	2	0
NZ_QEJI01000088	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_89, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000036	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_37, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000078	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_79, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000050	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_51, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000113	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_114, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000060	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_61, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000140	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_144, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000092	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_93, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000202	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_209, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000148	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_152, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000048	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_49, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000082	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_83, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000149	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_153, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000002	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_3, whole genome shotgun sequence	1 crisprs	WYL,PrimPol,cas9,cas1,cas2	1	8	0	0
NZ_QEJI01000087	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_88, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000109	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_110, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000123	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_124, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000020	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_21, whole genome shotgun sequence	0 crisprs	csa3	0	0	0	0
NZ_QEJI01000136	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_138, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000013	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_14, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000203	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_211, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000118	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_119, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000034	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_35, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000117	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_118, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000009	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_10, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000014	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_15, whole genome shotgun sequence	0 crisprs	cas3	0	0	0	0
NZ_QEJI01000051	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_52, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000157	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_161, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000090	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_91, whole genome shotgun sequence	1 crisprs	NA	0	0	0	0
NZ_QEJI01000086	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_87, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000084	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_85, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000003	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_4, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000059	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_60, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000010	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_11, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000065	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_66, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000128	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_129, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000070	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_71, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000184	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_191, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000093	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_94, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000031	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_32, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000100	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_101, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000072	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_73, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000158	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_162, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000047	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_48, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000125	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_126, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000169	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_173, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000106	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_107, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000137	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_139, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000054	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_55, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000097	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_98, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000160	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_164, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000028	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_29, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000058	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_59, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000045	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_46, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000204	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_212, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000181	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_187, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000196	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_203, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000144	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_148, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000027	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_28, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000044	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_45, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000189	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_196, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000176	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_180, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000121	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_122, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000188	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_195, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000116	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_117, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000132	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_134, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000012	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_13, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000103	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_104, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000127	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_128, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000080	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_81, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000163	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_167, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000120	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_121, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000032	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_33, whole genome shotgun sequence	0 crisprs	WYL	0	0	0	0
NZ_QEJI01000089	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_90, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000068	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_69, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000006	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_7, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000119	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_120, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000114	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_115, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000043	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_44, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000018	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_19, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000161	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_165, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000165	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_169, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000124	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_125, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000192	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_199, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000040	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_41, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000108	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_109, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000061	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_62, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000046	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_47, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000201	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_208, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000168	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_172, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000175	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_179, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000094	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_95, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000171	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_175, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000135	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_137, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000199	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_206, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000198	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_205, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000067	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_68, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000042	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_43, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000115	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_116, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000033	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_34, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000147	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_151, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000159	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_163, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000111	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_112, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QEJI01000150	Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_154, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_QEJI01000090_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_QEJI01000090_1

1-85

Orphan

Consensus_repeat	Method
CGATTTCAAGAAGTCAGTCGATTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_QEJI01000090_1

>merge|NZ_QEJI01000090|1|1-85|CRISPRCasFinder
CGATTTCAAGAAGTCAGTCGATTGCACATAGCCGATCAGCAAGTGTAGCGGAATCACAGTCGATTTCAAGAAGTCAGTCGATTGC

>NZ_QEJI01000090|1|1|1-85|CRISPRCasFinder
CGATTTCAAGAAGTCAGTCGATTGC	ACATAGCCGATCAGCAAGTGTAGCGGAATCACAGT
CGATTTCAAGAAGTCAGTCGATTGC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

78234 : 92289

uncultured_Mediterranean_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014613722.1\|78234_79374_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.2e-87	45.5
WP_014613723.1\|79390_79654_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.0e-06	42.9
WP_096547962.1\|79795_82075_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	5.5e-28	32.4
WP_037544195.1\|82191_84477_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.9e-69	29.5
WP_014613726.1\|84488_85007_+	adenine phosphoribosyltransferase	A0A2K9L2N8	Tupanvirus	4.3e-13	31.8
WP_014613727.1\|85363_87553_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1S6L1R3	Vibrio_phage	2.0e-06	38.0
WP_110148524.1\|87565_88018_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_110148525.1\|88014_88890_+	N-acetylmuramoyl-L-alanine amidase	C8CHK8	Thermus_virus	2.5e-05	30.7
WP_014613730.1\|89251_90523_+\|tRNA	histidine--tRNA ligase	A0A2K9L6G5	Tupanvirus	3.2e-17	23.6
WP_014613731.1\|90522_92289_+\|tRNA	aspartate--tRNA ligase	A0A2K9KZX5	Tupanvirus	6.6e-13	31.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_QEJI01000007

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

139056 : 178618

Staphylococcus_phage(73.33%)

holin,protease,portal,terminase,plate,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110148338.1\|139056_139449_-	hypothetical protein	B4XYR0	Lactobacillus_phage	9.1e-32	57.0
WP_100006908.1\|139579_139732_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_100006909.1\|139728_140076_+	hypothetical protein	NA	NA	NA	NA
WP_110148339.1\|140281_141229_-	N-acetylmuramoyl-L-alanine amidase	A0A1P8CMK9	Staphylococcus_phage	4.1e-86	52.4
WP_110148340.1\|141221_141677_-\|holin	phage holin family protein	A0A1S6KVE0	Staphylococcus_phage	4.6e-43	66.2
WP_110148341.1\|141687_143655_-	SGNH/GDSL hydrolase family protein	I6P9N4	Staphylococcus_phage	7.4e-114	44.2
WP_110148342.1\|143725_144997_-\|plate	BppU family phage baseplate upper protein	A0A1J0MFQ3	Staphylococcus_phage	1.1e-200	80.9
WP_037542926.1\|145013_146045_-	SGNH/GDSL hydrolase family protein	A0A1J0MFI8	Staphylococcus_phage	9.1e-140	76.9
WP_015729181.1\|146056_146677_-	hypothetical protein	A0A1J0MFD6	Staphylococcus_phage	6.0e-70	61.0
WP_110148343.1\|146683_146884_-	hypothetical protein	A0A1J0MFL4	Staphylococcus_phage	9.7e-06	67.6
WP_110148361.1\|146870_148436_-\|tail	phage tail protein	A0A2I6PDE4	Staphylococcus_phage	1.6e-148	49.5
WP_080552907.1\|148445_149183_-\|tail	phage tail family protein	I1W5Y8	Staphylococcus_phage	6.4e-87	62.6
WP_110148344.1\|149272_154858_-\|tail	phage tail tape measure protein	A0A2I6PDS2	Staphylococcus_phage	0.0e+00	55.1
WP_015729186.1\|154871_155027_-	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	5.0e-10	63.5
WP_015729187.1\|155068_155419_-	hypothetical protein	A0A0K1LKJ0	Staphylococcus_phage	1.2e-27	57.8
WP_015729188.1\|155526_155988_-	Ig domain-containing protein	A0A1J0MFD8	Staphylococcus_phage	2.1e-35	52.0
WP_037542920.1\|156082_156763_-\|tail	tail protein	Q9B0D5	Staphylococcus_virus	4.2e-85	74.5
WP_037542910.1\|156802_157198_-	hypothetical protein	A0A2I6PDD8	Staphylococcus_phage	2.2e-49	73.3
WP_037542908.1\|157199_157601_-	hypothetical protein	R4WAN5	Staphylococcus_phage	1.4e-51	77.4
WP_110148345.1\|157597_157960_-	hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	1.1e-18	40.0
WP_015729193.1\|157940_158237_-	hypothetical protein	A0A2H4JAM0	uncultured_Caudovirales_phage	5.3e-16	42.9
WP_110148346.1\|158305_159433_-\|capsid	phage major capsid protein	A0A1W6JPL4	Staphylococcus_phage	4.8e-150	73.6
WP_110148347.1\|159461_160184_-\|protease	Clp protease ClpP	A0A1W6JPK0	Staphylococcus_phage	6.3e-63	50.2
WP_110148348.1\|160173_161328_-\|portal	phage portal protein	A0A075M040	Staphylococcus_phage	5.8e-111	51.4
WP_110148349.1\|161342_162983_-\|terminase	terminase large subunit	A8AT95	Listeria_phage	2.1e-223	68.0
WP_100006922.1\|162979_163279_-\|terminase	P27 family phage terminase small subunit	A0A2H4JBX8	uncultured_Caudovirales_phage	5.1e-19	59.8
WP_110148350.1\|163405_163741_-	HNH endonuclease	D2XR61	Bacillus_phage	6.0e-24	53.6
WP_037542896.1\|164002_164416_-	sigma-70 family RNA polymerase sigma factor	A0A1J0MFD1	Staphylococcus_phage	2.8e-55	79.9
WP_110148351.1\|164540_164984_-	hypothetical protein	C9E2P0	Enterococcus_phage	1.3e-21	42.1
WP_103866776.1\|165004_165577_-	MazG-like family protein	B3GVZ0	Streptococcus_phage	1.2e-19	38.0
WP_110148352.1\|165539_165860_-	hypothetical protein	NA	NA	NA	NA
WP_015729203.1\|165860_166223_-	hypothetical protein	NA	NA	NA	NA
WP_110148353.1\|166219_166615_-	hypothetical protein	A0A1J0MFR8	Staphylococcus_phage	2.6e-18	44.7
WP_041614783.1\|166611_166827_-	hypothetical protein	NA	NA	NA	NA
WP_015978006.1\|166826_167177_-	ORF029	Q4ZD40	Staphylococcus_phage	5.4e-60	100.0
WP_103866772.1\|167173_167359_-	hypothetical protein	A0A1J0MFY5	Staphylococcus_phage	2.8e-15	70.5
WP_110148362.1\|167364_167595_-	hypothetical protein	A0A223LIA9	Staphylococcus_phage	1.3e-25	71.6
WP_103866770.1\|167591_167843_-	hypothetical protein	NA	NA	NA	NA
WP_110148354.1\|167989_168196_-	hypothetical protein	NA	NA	NA	NA
WP_096636858.1\|168359_169142_-	ATP-binding protein	A0A1W6JPS4	Staphylococcus_phage	2.3e-87	60.9
WP_049770167.1\|169156_169924_-	DnaD domain protein	A0A1Q1PVU4	Staphylococcus_phage	1.3e-58	60.9
WP_015729210.1\|169972_170692_-	hypothetical protein	A0A0K2CZT8	Paenibacillus_phage	3.2e-43	42.4
WP_015729211.1\|170707_171115_-	hypothetical protein	A0A1L2JY32	Aeribacillus_phage	7.8e-18	42.6
WP_015729212.1\|171129_171591_-	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	1.1e-49	62.2
WP_110148355.1\|171592_172228_-	MBL fold metallo-hydrolase	A0A1Q1PW06	Staphylococcus_phage	1.5e-76	65.5
WP_110148356.1\|172290_173205_-	recombinase RecT	A0A2I6PDH5	Staphylococcus_phage	1.7e-129	78.8
WP_181397709.1\|173218_173416_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_110148358.1\|173408_175361_-	AAA family ATPase	A0A0N9SKM4	Staphylococcus_phage	9.6e-199	55.9
WP_100006936.1\|175376_175634_-	DUF1108 family protein	A0A223LGN1	Staphylococcus_phage	2.3e-15	50.0
WP_110148359.1\|175720_176017_-	DUF2482 family protein	NA	NA	NA	NA
WP_172968882.1\|176018_176195_-	hypothetical protein	NA	NA	NA	NA
WP_110148360.1\|176209_176473_-	helix-turn-helix domain-containing protein	B7T0G2	Staphylococcus_virus	3.0e-31	74.4
WP_037544203.1\|176534_177026_+	hypothetical protein	Q4ZA64	Staphylococcus_virus	5.7e-07	34.4
WP_015729222.1\|177049_177232_-	hypothetical protein	NA	NA	NA	NA
WP_015729223.1\|177428_177656_-	hypothetical protein	NA	NA	NA	NA
WP_015729224.1\|177831_178143_+	helix-turn-helix transcriptional regulator	B5WZL2	Staphylococcus_phage	3.3e-29	67.0
WP_015729225.1\|178156_178618_+	hypothetical protein	A0A223LGM3	Staphylococcus_phage	2.4e-47	60.9

Anti-CRISPR protein detection

Acr_ID: NZ_QEJI01000007.1|WP_100006909.1|139728_140076_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_QEJI01000007.1|WP_103866770.1|167591_167843_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_QEJI01000007.1|WP_100006909.1|139728_140076_+|hypothetical-protein

139728_140076_+

115 aa aa

AcrIIA19

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3638\|WP_100006909.1\|AcrIIA19\|II-A\|Verified\|Staphylococcus-pseudintermedius	1.0	1	1.0

139056-178618

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_QEJI01000002_1		1.5\|158287\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158287-158316	30	157989-157960	0

1. spacer 1.5|158287|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NZ_QEJI01000007 position: 157989-157960, mismatch: 0

ggaaaatgtggtaatgaaggaggattttga	CRISPR spacer
ggaaaatgtggtaatgaaggaggattttga	Protospacer
******************************

NZ_QEJI01000007.1|WP_103866770.1|167591_167843_-|hypothetical-protein

167591_167843_-

83 aa aa

139056-178618

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_QEJI01000002_1		1.5\|158287\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158287-158316	30	157989-157960	0

1. spacer 1.5|158287|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NZ_QEJI01000007 position: 157989-157960, mismatch: 0

ggaaaatgtggtaatgaaggaggattttga	CRISPR spacer
ggaaaatgtggtaatgaaggaggattttga	Protospacer
******************************

4. NZ_QEJI01000015

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

62570 : 70990

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037543346.1\|62570_63137_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.8e-28	39.5
WP_065354425.1\|63136_64168_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.2e-62	42.7
WP_014614274.1\|64171_65593_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-50	33.4
WP_014614275.1\|65571_67761_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.6e-139	40.3
WP_014614276.1\|67753_68425_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_014614277.1\|68426_68687_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_014614278.1\|68689_69391_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	1.0e-49	44.2
WP_080552893.1\|69387_70560_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_014614280.1\|70507_70990_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.1e-21	44.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_QEJI01000011

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10688 : 32071

Staphylococcus_phage(95.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014613578.1\|10688_12092_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.4e-135	52.3
WP_014613579.1\|12094_13081_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	7.3e-78	47.6
WP_014613580.1\|13056_13308_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	4.6e-29	70.6
WP_014613581.1\|13366_13837_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	7.1e-39	53.8
WP_041613219.1\|13817_14594_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	5.3e-84	61.6
WP_065354154.1\|14991_16572_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	7.5e-242	76.2
WP_020219664.1\|17035_18235_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	5.2e-179	80.1
WP_014613585.1\|18322_19234_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	9.4e-88	68.3
WP_015729346.1\|19375_20212_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	5.9e-113	69.7
WP_014613587.1\|20313_20661_-	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_014613588.1\|20657_21023_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.2e-25	51.7
WP_014613589.1\|21055_21358_-	hypothetical protein	NA	NA	NA	NA
WP_110148404.1\|21510_22221_+	transaldolase	M1PR54	Cyanophage	3.4e-21	38.5
WP_063278602.1\|22387_22837_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.3e-10	36.7
WP_014613592.1\|22839_23271_-	competence protein ComK	NA	NA	NA	NA
WP_172426177.1\|23273_23828_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	3.0e-20	34.4
WP_110148405.1\|23959_24184_+	hypothetical protein	NA	NA	NA	NA
WP_014613595.1\|24340_25204_+	N-acetylglucosaminidase	A0A1J0MFB0	Staphylococcus_phage	1.1e-37	39.6
WP_110148406.1\|25592_27146_+	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	2.0e-13	60.3
WP_014613597.1\|27602_28649_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.4e-106	54.7
WP_020219655.1\|28653_29283_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.6e-62	59.5
WP_110148407.1\|29296_30478_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	7.0e-152	65.9
WP_015729343.1\|30492_30960_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	9.4e-52	64.9
WP_014613601.1\|31084_32071_-	proline dehydrogenase family protein	A0A2H4PQT6	Staphylococcus_phage	2.8e-122	67.0

DBSCAN-SWA_2

36189 : 43980

Staphylococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110148408.1\|36189_36753_-	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	4.5e-56	56.8
WP_110148409.1\|36749_37703_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	5.4e-62	79.7
WP_015729341.1\|37850_39032_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	9.8e-138	62.5
WP_096533595.1\|39340_41755_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	81.8
WP_014613611.1\|41781_42093_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.7e-33	69.9
WP_063278942.1\|42723_43980_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	1.3e-31	69.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_QEJI01000002

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_QEJI01000002_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_QEJI01000002_1

157989-158748

Consensus_repeat	Method
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	PILER-CR
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CRISPRCasFinder
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CRT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	PILER-CR

11 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_QEJI01000002_1

>merge|NZ_QEJI01000002|1|157989-158748|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACATTAGAAATGTTAGTCCCTAAGTTACAGAGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACTGCAGGAATCGGTTTTGTCCTGTATGCGCGGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACTATTTAAATTACGTTTCGCACGTTCAATCTGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACCATTAACTGCTTTGTCAAACTCACTAATTGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACGGAAAATGTGGTAATGAAGGAGGATTTTGAGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACAGAGAAGAAATTGTGGCAATACGGTATTGTGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACCGTCGATTTCGACATAATCAATCGCCTTATGGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACAATATAAAAGGCGCTAAGAGGCGTTATATGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACTGAGCCTTTATCATTTAGAACAGCTAGAGTGTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAACTTTCCTTCGTGATTTCTTCTTCTACTTCGAGTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAACCGAAAGTAAAGATAGTATGCAAGGTGCAAGGTTTTAGCACTATGTTTATTTAGAAAACATCATCAA

>NZ_QEJI01000002|1|1|157989-158352|PILER-CR
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	ATTAGAAATGTTAGTCCCTAAGTTACAGA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TGCAGGAATCGGTTTTGTCCTGTATGCGCG
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TATTTAAATTACGTTTCGCACGTTCAATCT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CATTAACTGCTTTGTCAAACTCACTAATT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GGAAAATGTGGTAATGAAGGAGGATTTTGA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACAGAGAAGAAATTGTGGCAATACGGTATTGTGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CGTCGATTTCGACATAATCAATCGCCTTATG
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	AATATAAAAGGCGCTAAGAGGCGTTATAT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TGAGCCTTTATCATTTAGAACAGCTAGAGT
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	TTTCCTTCGTGATTTCTTCTTCTACTTCGA


>NZ_QEJI01000002|1|1|157989-158748|CRISPRCasFinder
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	ATTAGAAATGTTAGTCCCTAAGTTACAGA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TGCAGGAATCGGTTTTGTCCTGTATGCGCG
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TATTTAAATTACGTTTCGCACGTTCAATCT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CATTAACTGCTTTGTCAAACTCACTAATT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GGAAAATGTGGTAATGAAGGAGGATTTTGA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	AGAGAAGAAATTGTGGCAATACGGTATTGT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CGTCGATTTCGACATAATCAATCGCCTTATG
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	AATATAAAAGGCGCTAAGAGGCGTTATAT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TGAGCCTTTATCATTTAGAACAGCTAGAGT
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	TTTCCTTCGTGATTTCTTCTTCTACTTCGA
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	CGAAAGTAAAGATAGTATGCAAGGTGCAAG
GTTTTAGCACTATGTTTATTTAGAAAACATCATCAA

>NZ_QEJI01000002|1|1|157989-158748|CRT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	ATTAGAAATGTTAGTCCCTAAGTTACAGA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TGCAGGAATCGGTTTTGTCCTGTATGCGCG
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TATTTAAATTACGTTTCGCACGTTCAATCT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CATTAACTGCTTTGTCAAACTCACTAATT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GGAAAATGTGGTAATGAAGGAGGATTTTGA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	AGAGAAGAAATTGTGGCAATACGGTATTGT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CGTCGATTTCGACATAATCAATCGCCTTATG
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	AATATAAAAGGCGCTAAGAGGCGTTATAT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TGAGCCTTTATCATTTAGAACAGCTAGAGT
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	TTTCCTTCGTGATTTCTTCTTCTACTTCGA
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	CGAAAGTAAAGATAGTATGCAAGGTGCAAG
GTTTTAGCACTATGTTTATTTAGAAAACATCATCAA

>NZ_QEJI01000002|1|2|158383-158682|PILER-CR
	ATTAGAAATGTTAGTCCCTAAGTTACAGA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TGCAGGAATCGGTTTTGTCCTGTATGCGCG
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TATTTAAATTACGTTTCGCACGTTCAATCT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CATTAACTGCTTTGTCAAACTCACTAATT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GGAAAATGTGGTAATGAAGGAGGATTTTGA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACAGAGAAGAAATTGTGGCAATACGGTATTGTGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CGTCGATTTCGACATAATCAATCGCCTTATG
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	AATATAAAAGGCGCTAAGAGGCGTTATAT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TGAGCCTTTATCATTTAGAACAGCTAGAGT
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	TTTCCTTCGTGATTTCTTCTTCTACTTCGA
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_QEJI01000002.1\|WP_014613254.1\|146441_146957_+\|galactose-6-phosphate-isomerase-subunit-LacB	unknown	unknown	gnl\|CDD\|181506
NZ_QEJI01000002.1\|WP_014613253.1\|145997_146426_+\|galactose-6-phosphate-isomerase-subunit-LacA	unknown	unknown	gnl\|CDD\|181505
NZ_QEJI01000002.1\|WP_110148276.1\|159982_161497_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_QEJI01000002.1\|WP_020220317.1\|148021_148336_+\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|129903
NZ_QEJI01000002.1\|WP_015729488.1\|162340_162586_+\|DUF2273-domain-containing-protein	unknown	unknown	gnl\|CDD\|227834
NZ_QEJI01000002.1\|WP_096536567.1\|151719_155724_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NZ_QEJI01000002.1\|WP_110148274.1\|155713_156589_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_QEJI01000002.1\|WP_181397704.1\|161785_162328_+\|alkaline-shock-response-membrane-anchor-protein-AmaP	unknown	unknown	gnl\|CDD\|380217
NZ_QEJI01000002.1\|WP_110148273.1\|150083_151490_+\|6-phospho-beta-galactosidase	unknown	unknown	gnl\|CDD\|184102
NZ_QEJI01000002.1\|WP_110148275.1\|158915_159926_+\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176214
NZ_QEJI01000002.1\|WP_100006574.1\|162639_163131_+\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|377129
NZ_QEJI01000002.1\|WP_015729497.1\|147027_147996_+\|tagatose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|183502
NZ_QEJI01000002.1\|WP_037542462.1\|148341_150066_+\|PTS-lactose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|273055
NZ_QEJI01000002.1\|WP_014613262.1\|156959_157808_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QEJI01000002.1\|WP_014613261.1\|156669_156963_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043

Protein	Function_ID	Function_description	E-value
NZ_QEJI01000002.1\|WP_014613254.1\|146441_146957_+\|galactose-6-phosphate-isomerase-subunit-LacB	gnl\|CDD\|181506	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed.	1.29917e-120
NZ_QEJI01000002.1\|WP_014613253.1\|145997_146426_+\|galactose-6-phosphate-isomerase-subunit-LacA	gnl\|CDD\|181505	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed.	2.99243e-84
NZ_QEJI01000002.1\|WP_110148276.1\|159982_161497_+\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NZ_QEJI01000002.1\|WP_020220317.1\|148021_148336_+\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|129903	TIGR00823, PTS_system_lactose-specific_IIA_component, phosphotransferase system enzyme II, lactose-specific, factor III. The PTS Lactose-N,N?-Diacetylchitobiose-b-glucoside (Lac) Family (TC 4.A.3)Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as the E. coli N,N?-diacetylchitobiose (Chb)permease which can transport aromatic b-glucosides and cellobiose as well as the chitin disaccharide, Chb, but only Chb induces expression of the chboperon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.19292e-44
NZ_QEJI01000002.1\|WP_015729488.1\|162340_162586_+\|DUF2273-domain-containing-protein	gnl\|CDD\|227834	COG5547, COG5547, Small integral membrane protein [Function unknown].	2.26744e-17
NZ_QEJI01000002.1\|WP_096536567.1\|151719_155724_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	5.99045e-104
NZ_QEJI01000002.1\|WP_110148274.1\|155713_156589_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.79143e-98
NZ_QEJI01000002.1\|WP_181397704.1\|161785_162328_+\|alkaline-shock-response-membrane-anchor-protein-AmaP	gnl\|CDD\|380217	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP. The founding member of this family, AmaP (Asp23 membrane anchoring protein), is related to Asp23 through part of its length, but includes a highly hydrophobic N-terminal region that should make it an integral membrane protein. Asp23 (alkaline shock protein of 23 kDa), described in PMID:7864904, is a cytosolic protein in Staphylococcus aureus, strongly induced by a pH shift from 7 to 10, and also recruited to the membrane. AmaP appears to be the partner protein with an integral membrane segment and the ability to anchor Asp23 to the membrane. This model was built to identify full-length homologs of AmaP, while excluding Asp23. Some but not all members of this family score above the cutoffs of Pfam model version PF03780.11, but full-length homologs of Asp23 score considerably higher. Asp23 family members previously were known as DUF322.	1.92484e-34
NZ_QEJI01000002.1\|WP_110148273.1\|150083_151490_+\|6-phospho-beta-galactosidase	gnl\|CDD\|184102	PRK13511, PRK13511, 6-phospho-beta-galactosidase; Provisional.	0
NZ_QEJI01000002.1\|WP_110148275.1\|158915_159926_+\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176214	cd08252, AL_MDR, Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	5.94505e-156
NZ_QEJI01000002.1\|WP_100006574.1\|162639_163131_+\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|377129	pfam03780, Asp23, Asp23 family, cell envelope-related function. The alkaline shock protein Asp23 was identified as an alkaline shock protein that was expressed in a sigmaB-dependent manner in Staphylococcus aureus. Following an alkaline shock Asp23 accumulates in the soluble protein fraction of the S. aureus cell. Asp23 is one of the most abundant proteins in the cytosolic protein fraction of stationary S. aureus cells, with a copy-number of >25000 per cell. A second Asp23-family protein, AmaP, which is encoded within the asp23-operon, is required to localize Asp23 to the cell membrane. The overall function for the family is thus a cell envelope-related one in Gram-positive bacteria.	2.74603e-34
NZ_QEJI01000002.1\|WP_015729497.1\|147027_147996_+\|tagatose-bisphosphate-aldolase	gnl\|CDD\|183502	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed.	0
NZ_QEJI01000002.1\|WP_037542462.1\|148341_150066_+\|PTS-lactose-transporter-subunit-IIBC	gnl\|CDD\|273055	TIGR00394, lac_pts_IIC, phosphotransferase system, lactose specific, IIC component. This family of proteins models the IIC domain of the phosphotransferase system (PTS) for lactose. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to lactose. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS].	0
NZ_QEJI01000002.1\|WP_014613261.1\|156669_156963_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	3.86692e-23

>NZ_QEJI01000002.1|WP_014613262.1|156959_157808_+|hypothetical-protein
MKIASHVTEVLEIKEQSLNIITFEDTDLCGMFIQNFMDYMTNKPVVENQFAHFISDDYETINSKNFHPIILNGGDRDVLGQKLIEEKVYQIFEEQIIKCETTNYEFLKFEQSLTHLKSSLGIYDSDYQIELQSSTFKLRKLLKLFGLDFHNQLKDLNELNKRKAFIDLLIHPTKENILIILFPESHLGIHDIKKFIHLIKRYKFTTIIFTNHPSIIINEENIFLCKSNKKCHDIEKIYEELMLFVPEEVVSHQLVNMIAYHEFVGENLSEYERYFKFINHYN
>NZ_QEJI01000002.1|WP_014613261.1|156669_156963_+|CRISPR-associated-endonuclease-Cas2
MFDLPVETSSERRAYRQFVKFLTNEGYVRLQFSIYCKLIFNSSTLNYQITKLKSVVPSNGIVQTLVVTENQFSNMKCLVGNPPKGQIGLSSERVIEL
>NZ_QEJI01000002.1|WP_110148274.1|155713_156589_+|type-II-CRISPR-associated-endonuclease-Cas1
MSFRTVIITKESKLSLRMNQLIVKSENLSRIPLNEILCLVIEHPNVSMTGHLMNALSDQKIVTILCNTKHLPNTLLLPLYGHHRQARLIQNQMNWKNERKGQLWQLLVKHKILNQKQVIQECFKERDSELFDAFANNVELDDSTNREGHAAKVYFNIVLDPGYARGDDTAQNAAMDYGYQILLAIVARTIVSKGYLTELGIKHHNEFNIYNLASDFMEIFRPLIDYLVLKNVEQQFETEQKRAILDILNRKLKIDNKEYYFLNAVEIYVDSLFKYLSNGNREVIKIPTWTY
>NZ_QEJI01000002.1|WP_096536567.1|151719_155724_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MGRKPYILSLDIGTGSVGYACMDKGFNVLKYHDKDALGVYLFDGALTAQERRQFRTSRRRKNRRIKRLGLLQELLAPLVQNPNFYQFQRQFAWKNDNMDFKNKSLSEVLSFLGYESKKYPTIYHLQEALLLKDEKFDPELIYMALYHLVKYRGHFLFDHLKIENLTNNDNMHDFVELIETYENLNNIKLNLDYEKTKVIYEILKDNEMTKNDRAKRVKNMEKKLEQFSIMLLGLKFNEGKLFNHADNAEELKGANQSHTFADNYEENLTPFLTVEQSEFIERANKIYLSLTLQDILKGKKSMAMSKVAAYDKFRNELKQVKDIVYKADSTRTQFKKIFVSSKKSLKQYDATPNDQTFSSLCLFDQYLIRPKKQYSLLIKELKKIIPQDSELYFEAENDTLLKVLNTTDNASIPMQINLYEAETILRNQQKYHAEITDEMIEKVLSLIQFRIPYYVGPLVNDHTASKFGWMERKSNESIKPWNFDEVVDRSKSATQFIRRMTNKCSYLINEDVLPKNSLLYQEMEVLNELNATQIRLQTDPKNRKYRMMPQIKLFAVEHIFKKYKTVSHSKFLEIMLNSNHRENFMNHGEKLSIFGTQDDKKFASKLSSYQDMTKIFGDIEGKRAQIEEIIQWITIFEDKKILVQKLKECYPELTSKQINQLKKLNYSGWGRLSEKLLTHAYQGHSIIELLRHSDENFMEILTNDVYGFQNFIKEENQVQSNKIQHQDIANLTTSPALKKGIWSTIKLVRELTSIFGEPEKIIMEFATEDQQKGKKQKSRKQLWDDNIKKNKLKSVDEYKYIIDVANKLNNEQLQQEKLWLYLSQNGKCMYSGQSIDLDALLSPNATKHYEVDHIFPRSFIKDDSIDNKVLVIKKMNQTKGDQVPLQFIQQPYERIAYWKSLNKAGLISDSKLHKLMKPEFTAMDKEGFIQRQLVETRQISVHVRDFLKEEYPNTKVIPMKAKMVSEFRKKFDIPKIRQMNDAHHAIDAYLNGVVYHGAQLAYPNVDLFDFNFKWEKVREKWKALGEFNTKQKSRELFFFKKLEKMEVSQGELLISKIKLDMNHFKINYSRKLANIPQQFYNQTAVSPKTAELKYESNKSNEVVYKGLTPYQTYVVAIKSVNKKGKEKMEYQMIDHYVFDFYKFQNGNEKELALYLAQRENKDEVLDAQIVYSLNKGDLLYINNHPCYFVSRKEVINAKQFELTVEQQLSLYNVMNNKETNVEKLLKEYDFIAEKVINEYHHYLNSKLKEKRVRTFFSESNQTHEDFIKALDELFKVVTASATRSDKIGSRKNSMTHRAFLGKGKDVKVAYTSISGLKTTKPKSLFKLAESRNEL
>NZ_QEJI01000002.1|WP_110148273.1|150083_151490_+|6-phospho-beta-galactosidase
MKKLPEDFIFGGATAAYQAEGATNIDGKGRVAWDTYLEKNYWYTAEPASDFYHRYPVDLELSEKFGVNGIRISIAWSRIFPKGYGEVNPKGVDYYHRLFKECMKRNVEPFVTLHHFDTPEALHSNGDFLNRDNIQHFVDYAEFCFNEFKEVNYWTTFNEIGPIGDGQYLVGKFPPGIQYHFEKVFQSHHNMMVAHAKAVALFKEQGHQGEIGVVHALPTKYPFNPDDPEDVRAAELEDIIHNKFILDATYLGHYSKETMDGVNHILSINGGALDLRQEDFEILEVAKDLNDFLGINYYMSDWMRSFEGESEITHNSKGDKGGSKYQLKGIGQREFDVDVPRTDWDWMIYPQGLYDQIMRVKKDYPNYKKIYITENGLGYKDEFINDTVQDDARIDYVKQHLEVIADAIEDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQQRYPKKSAYWYKKLAETRIIES
>NZ_QEJI01000002.1|WP_037542462.1|148341_150066_+|PTS-lactose-transporter-subunit-IIBC
MNKLIGFIEKGKPFFEKLSRNIYLRAIRDGFISAMPIILFSSIFLLIAYVPNIFDFKWSKETEALIMKPYHYSMGIVGLFVAGTTAKALTDSYNRKLERTNQINFISTMLASMSGFLFLASNTLEAGGFANAFMGTKGLLTAFLSAFITVMIYNICIKNNITIKMPKEVPPNISQVFKDLIPFSLVILTLYGLDILSRSVNKTNVAESILKVFEPLFTAADGYVGITIIFGAFAFFWFVGIHGPSIVEPAIAAITYANIETNFKLLHAGEHADKILTPGTQMFIVTMGGTGATLVVPFIFMWLSKSKRNKAIGRASVVPTFFGVNEPILFGAPIVLNPIFFIPFIMAPIINVWIFKFFVDVIGMNSFSVFLPWTTPGPLGIVMGTGFGVWSFVLAMTLIIVDTFIYYPFFKVYDNQILDDELKGIDSTNELHAKVGENFNTSKADAILNASTNQSVADMTQEANSSNPITKPINVLVLCAGGGTSGLLANALNQAATEYEAPVKAAADSYGAHMDIMKDFDLVILAPQVASNYQDIKQDTDRLGIKLAKTQGGEYISLTRDGQAALKFVQDHFR
>NZ_QEJI01000002.1|WP_020220317.1|148021_148336_+|PTS-lactose/cellobiose-transporter-subunit-IIA
MNREEVAMLGFEIVAYAGDARSKYLEALSAAQAGDYDKAEQLIEEGNQCIVDAHKAQTSLLQKEAMGDDIAYSVTMMHGQDHLMTTILLKDMLKHIIELYKRGS
>NZ_QEJI01000002.1|WP_015729497.1|147027_147996_+|tagatose-bisphosphate-aldolase
MSNKQELLARLSDENGIISALAFDQRGALKRMMAQFQASEPEVRDIEQLKKLVSEELTPYASSILLDPEYGLPATQVRHSSTGLLLAYEKTGYDVNAKGRLPDCLVDWSAKRIKEAGAQAVKFLLYYDVDDEAYINDQKEAYIERIGSECKAEEIPFFLEILAYDDSIKDNKSKEYAKVKPRKVIEAMRVFSNERFGVDVLKVEVPVDMNYVEGFSQGEFVYTREEAAAYFKQQDEATHLPYIYLSAGVSAQLFQETLKFAHEAGAQFNGVLCGRATWSGAVKAYIENGEEAAREWLRTEGYHNINELNHVLKETAVSYKSK
>NZ_QEJI01000002.1|WP_014613254.1|146441_146957_+|galactose-6-phosphate-isomerase-subunit-LacB
MKIAIGSDHIVTDTKMEVSQFLKSLGHEVLDCGTYDFARTHYPIFGKKVGEAVTSGEADLGICICGTGVGINNAVNKVPGVRSALVRDMSSAIYAKEELNANVIGFGGKIIGELLLCDIVEAFINAEYHPTAENKRLIEKIAQVESENENQKEDSFFDEFLEKWDNGEYHD
>NZ_QEJI01000002.1|WP_014613253.1|145997_146426_+|galactose-6-phosphate-isomerase-subunit-LacA
MKVIIGADQYGLSLKEHIKTFLLQHQYEVLDVTSEELEDFVDVTVAVAKEVQQNDENLGVVIDAYGVGSFMVATKIKGMIAAEVSDERSAYMTRSHNNSKMITMGAALVGQTLAENIVKGFIEGHYDGGRHQIRVDMLNKMG
>NZ_QEJI01000002.1|WP_110148275.1|158915_159926_+|zinc-binding-alcohol-dehydrogenase-family-protein
MVAIIATQPFQLAEGQKFEKVSRELPTPEAHDILIKVYATGINPVDTKMRQAPLNAEARVLGFDAAGVVEAVGDAVTDFKPGDRIYYSGSNQRDGSNQTYQLVNENYLAHMPKTLSFAEAAALPLTAITAYETLFDVFNISPNPQQNQGKTLFIINGAGGVGSIATQIAKTYGLTVVTTASRPETNAWSKKMGADVVLNHKEDLAKQFDDQNLSRPNYIFCTYDTDHYYDVMIDLVQPRGHIATIVAFNKNQDLNALKQKSITFTHEFMFARAIHGVDEGMYRKYLEDVTAKVDAGQYQTTLNSVLTGLTPENVLKAHEMMEAQSHIGKLVIEIVE
>NZ_QEJI01000002.1|WP_110148276.1|159982_161497_+|BCCT-family-transporter
MKQTKKKKHVSLVFWISLLLCSLFVLVGAIFPKQMEETTQSITTWIGQNFSWYYLLLLLAIFLICVYLLFSRYSQITLGEEGEEPEFSLKSWFAMLFSAGMGIGLVFWTTAEPISHAYTATPIHQAGTQAAIDDSLQFAFFHWGIHAWAVYAIVALAFAYFNFHKGYPGLVSATLTPLFGEKQMQGPLGKLLDILAVIATVTGVSATLGFGALQISEGLNFLFNIPANFTTQILIIIMATALFIWSTWSGLSKGIKMLSNINMILAFIVLVVVFIIGPTLYILNMFTNSLGHYIAHFFDMSLRLTINNPEKSQWIQNWTVFYWAWWISWAPFVGIFIARVSRGRMIKEFIIGVLFVPSLVCFIFFSVFGASAIYLQDNGIANIAGEAIETATFATLEHFPLGFVMSIVTLVVVMIFFVTSADSATYVLGMLSTNGDNYPGSWVKVSWGIMLALFAFIMLLTGGTQAIQNLLIIAALPFSFVIIFMIWSLFKALAAERPRLSKRK
>NZ_QEJI01000002.1|WP_181397704.1|161785_162328_+|alkaline-shock-response-membrane-anchor-protein-AmaP
MTRIKNFILGLLIVIIVGFLLFMYIDYQPIKEYQDYFYQFNWFQPLLIGLAGLLILIGLILFLRAFKPTYRKPGLYKDYSDGHIYISRKSIENTVYDTLSKYDEIRQPNVVSKLYNKKKNSFIDITTDFIVPSESANVPSLVEQVRLDIKESVERFSELHVKSVKVNVRDQKRDNGPRVV
>NZ_QEJI01000002.1|WP_015729488.1|162340_162586_+|DUF2273-domain-containing-protein
MSNENRNGQSERDSVEQFAKLLQSYKWRIIGFFFFLIIAILFLTLGFWKTILIIVLCLIGIGVGYIKDRTQDFLNLLNRLS
>NZ_QEJI01000002.1|WP_100006574.1|162639_163131_+|Asp23/Gls24-family-envelope-stress-response-protein
MAVENNKVKESYNRETGVNEKERQQREDNQGQQFSNSLTFSDEVVEKIAGIAAREVRGILDMKGGFVDSISGSFSGGNNVTQGVSAEVGEKQAAIDLKVILEYGESAPKIFRKVTELIKEQVKHITGLDVVEVNMQVDDVMTRKEWQQKHEKNKDQNENKGLQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_QEJI01000002_1	1.5\|158287\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158287-158316	30	NZ_QEJI01000007.1	157960-157989	0	1.0

1. spacer 1.5|158287|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to position: 157960-157989, mismatch: 0, identity: 1.0

ggaaaatgtggtaatgaaggaggattttga	CRISPR spacer
ggaaaatgtggtaatgaaggaggattttga	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_QEJI01000002_1	1.5\|158287\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158287-158316	30	MK075005	Staphylococcus phage phiSP119-2, partial genome	22211-22240	0	1.0
NZ_QEJI01000002_1	1.7\|158419\|31\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158419-158449	31	AP019561	Staphylococcus phage SP197 DNA, complete genome	4387-4417	2	0.935
NZ_QEJI01000002_1	1.7\|158419\|31\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158419-158449	31	MK075006	Staphylococcus phage phiSP119-3, complete genome	16262-16292	2	0.935
NZ_QEJI01000002_1	1.7\|158419\|31\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158419-158449	31	MK075004	Staphylococcus phage phiSP119-1, complete genome	16026-16056	2	0.935
NZ_QEJI01000002_1	1.11\|158683\|30\|NZ_QEJI01000002\|CRISPRCasFinder,CRT	158683-158712	30	NZ_CP031260	Klebsiella quasipneumoniae strain L22 plasmid pL22-3, complete sequence	48568-48597	3	0.9
NZ_QEJI01000002_1	1.10\|158617\|30\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158617-158646	30	KX827371	Staphylococcus phage SpT99F3, complete genome	14235-14264	4	0.867
NZ_QEJI01000002_1	1.10\|158617\|30\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158617-158646	30	MT423824	Staphylococcus virus pSp_SNUABM-S, complete genome	21270-21299	4	0.867
NZ_QEJI01000002_1	1.10\|158617\|30\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158617-158646	30	MT423823	Staphylococcus virus pSp_SNUABM-J, complete genome	22012-22041	4	0.867
NZ_QEJI01000002_1	1.10\|158617\|30\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158617-158646	30	KX827369	Staphylococcus phage SpT152, complete genome	14568-14597	4	0.867
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NZ_CP053959	Staphylococcus capitis strain FDAARGOS_753 plasmid unnamed2, complete sequence	674-703	5	0.833
NZ_QEJI01000002_1	1.1\|158025\|29\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158025-158053	29	MN693449	Marine virus AFVG_25M25, complete genome	24654-24682	6	0.793
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NZ_CP015175	Staphylococcus aureus strain RIVM6519 plasmid pRIVM6519-2, complete sequence	1335-1364	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NZ_CP033113	Staphylococcus aureus strain ST20130944 plasmid pST20130944, complete sequence	166-195	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NC_005054	Staphylococcus aureus plasmid pLW043, complete sequence	19260-19289	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NC_015173	Staphylococcus simulans bv. staphylolyticus strain NRRL B-2628 plasmid pACK2, complete sequence	28186-28215	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NC_005208	Staphylococcus warneri plasmid pPI-2 DNA, complete sequence	1593-1622	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	CP030614	Staphylococcus aureus strain ER01560.3 plasmid unnamed1, complete sequence	6622-6651	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NZ_CP033115	Staphylococcus aureus strain ST20130945 plasmid pST20130945, complete sequence	165-194	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NC_012547	Staphylococcus aureus plasmid pGO1, complete sequence	38327-38356	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NC_005024	Staphylococcus aureus plasmid pSK41, complete sequence	38327-38356	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NC_013342	Staphylococcus aureus plasmid SAP079A, complete sequence	43204-43233	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NC_013344	Staphylococcus aureus plasmid SAP082A, complete sequence	43754-43783	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NC_025022	Staphylococcus aureus subsp. aureus strain SM52 plasmid pSM52, complete sequence	383-412	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NZ_CP047823	Staphylococcus aureus strain UP_1278 plasmid unnamed1, complete sequence	2819-2848	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NC_007165	Staphylococcus warneri plasmid pSW174, complete sequence	1400-1429	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NC_007166	Staphylococcus warneri plasmid pSW49, complete sequence	1400-1429	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NZ_AP017321	Staphylococcus aureus strain MI plasmid pMI, complete sequence	53366-53395	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	AP012550	Staphylococcus aureus plasmid pN315G DNA, complete sequence, strain: N315G	35001-35030	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NZ_CP026963	Staphylococcus aureus strain FDAARGOS_6 plasmid unnamed1	41659-41688	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NC_013372	Staphylococcus epidermidis plasmid SAP016A, complete sequence	41178-41207	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NZ_CP029170	Staphylococcus aureus strain PTDrAP2 plasmid pPTDrAP2c, complete sequence	178-207	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NZ_CP029171	Staphylococcus aureus strain PTDrAP2 plasmid pPTDrAP2d, complete sequence	178-207	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NZ_CP040620	Staphylococcus aureus strain J01 plasmid pJ01-01, complete sequence	6985-7014	6	0.8
NZ_QEJI01000002_1	1.2\|158090\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158090-158119	30	NZ_MH587578	Staphylococcus aureus strain WG1647 plasmid pWBG615, complete sequence	21771-21800	6	0.8
NZ_QEJI01000002_1	1.4\|158222\|29\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158222-158250	29	KY744231	Sulfolobus islandicus rod-shaped virus 4, partial genome	4219-4247	6	0.793
NZ_QEJI01000002_1	1.5\|158287\|30\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158287-158316	30	MG592459	Vibrio phage 1.084.O._10N.261.49.F5, partial genome	73193-73222	6	0.8
NZ_QEJI01000002_1	1.10\|158617\|30\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158617-158646	30	MF288922	Bacillus phage Janet, complete genome	141749-141778	6	0.8
NZ_QEJI01000002_1	1.4\|158222\|29\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158222-158250	29	MK448891	Streptococcus phage Javan266, complete genome	33103-33131	7	0.759
NZ_QEJI01000002_1	1.7\|158419\|31\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158419-158449	31	AB797215	Klebsiella phage 0507-KN2-1 DNA, complete genome	97134-97164	7	0.774
NZ_QEJI01000002_1	1.7\|158419\|31\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158419-158449	31	MG428990	Klebsiella phage Menlow, complete genome	31711-31741	7	0.774
NZ_QEJI01000002_1	1.9\|158551\|30\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158551-158580	30	NZ_CP026317	Vibrio campbellii strain BoB-90 plasmid unnamed 1, complete sequence	38085-38114	7	0.767
NZ_QEJI01000002_1	1.10\|158617\|30\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158617-158646	30	MN693991	Marine virus AFVG_250M861, complete genome	31401-31430	7	0.767
NZ_QEJI01000002_1	1.10\|158617\|30\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158617-158646	30	MN692996	Marine virus AFVG_117M70, complete genome	31389-31418	7	0.767
NZ_QEJI01000002_1	1.10\|158617\|30\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158617-158646	30	MN694291	Marine virus AFVG_250M864, complete genome	6916-6945	7	0.767
NZ_QEJI01000002_1	1.10\|158617\|30\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158617-158646	30	MN694613	Marine virus AFVG_250M1003, complete genome	33736-33765	7	0.767
NZ_QEJI01000002_1	1.10\|158617\|30\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158617-158646	30	MN694083	Marine virus AFVG_250M863, complete genome	6920-6949	7	0.767
NZ_QEJI01000002_1	1.10\|158617\|30\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158617-158646	30	MN693818	Marine virus AFVG_250M1205, complete genome	32048-32077	7	0.767
NZ_QEJI01000002_1	1.10\|158617\|30\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158617-158646	30	MN694793	Marine virus AFVG_250M862, complete genome	31400-31429	7	0.767
NZ_QEJI01000002_1	1.10\|158617\|30\|NZ_QEJI01000002\|CRISPRCasFinder,CRT,PILER-CR	158617-158646	30	MN693817	Marine virus AFVG_250M336, complete genome	32026-32055	7	0.767
NZ_QEJI01000002_1	1.4\|158222\|29\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158222-158250	29	NC_008376	Geobacillus phage GBSV1, complete genome	6649-6677	8	0.724
NZ_QEJI01000002_1	1.4\|158222\|29\|NZ_QEJI01000002\|PILER-CR,CRISPRCasFinder,CRT	158222-158250	29	NC_009737	Bacillus virus 1, complete genome	6646-6674	8	0.724

1. spacer 1.5|158287|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to MK075005 (Staphylococcus phage phiSP119-2, partial genome) position: , mismatch: 0, identity: 1.0

ggaaaatgtggtaatgaaggaggattttga	CRISPR spacer
ggaaaatgtggtaatgaaggaggattttga	Protospacer
******************************

2. spacer 1.7|158419|31|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to AP019561 (Staphylococcus phage SP197 DNA, complete genome) position: , mismatch: 2, identity: 0.935

cgtcgatttcgacataatcaatcgccttatg	CRISPR spacer
cgtcgatttcgacataatcaatcgctttgtg	Protospacer
*************************.**.**

3. spacer 1.7|158419|31|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to MK075006 (Staphylococcus phage phiSP119-3, complete genome) position: , mismatch: 2, identity: 0.935

cgtcgatttcgacataatcaatcgccttatg	CRISPR spacer
cgtcgatttcgacataatcaatcgctttgtg	Protospacer
*************************.**.**

4. spacer 1.7|158419|31|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to MK075004 (Staphylococcus phage phiSP119-1, complete genome) position: , mismatch: 2, identity: 0.935

cgtcgatttcgacataatcaatcgccttatg	CRISPR spacer
cgtcgatttcgacataatcaatcgctttgtg	Protospacer
*************************.**.**

5. spacer 1.11|158683|30|NZ_QEJI01000002|CRISPRCasFinder,CRT matches to NZ_CP031260 (Klebsiella quasipneumoniae strain L22 plasmid pL22-3, complete sequence) position: , mismatch: 3, identity: 0.9

cgaaagtaaagatagtatgcaaggtgcaag	CRISPR spacer
tgaaagtaaagatagtatgaaaggcgcaag	Protospacer
.****************** ****.*****

6. spacer 1.10|158617|30|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to KX827371 (Staphylococcus phage SpT99F3, complete genome) position: , mismatch: 4, identity: 0.867

tttccttcgtgatttcttcttctacttcga	CRISPR spacer
ttctctccgtgatttcttcttctgcttcga	Protospacer
**..**.****************.******

7. spacer 1.10|158617|30|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to MT423824 (Staphylococcus virus pSp_SNUABM-S, complete genome) position: , mismatch: 4, identity: 0.867

tttccttcgtgatttcttcttctacttcga	CRISPR spacer
ttctctccgtgatttcttcttctgcttcga	Protospacer
**..**.****************.******

8. spacer 1.10|158617|30|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to MT423823 (Staphylococcus virus pSp_SNUABM-J, complete genome) position: , mismatch: 4, identity: 0.867

tttccttcgtgatttcttcttctacttcga	CRISPR spacer
ttctctccgtgatttcttcttctgcttcga	Protospacer
**..**.****************.******

9. spacer 1.10|158617|30|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to KX827369 (Staphylococcus phage SpT152, complete genome) position: , mismatch: 4, identity: 0.867

tttccttcgtgatttcttcttctacttcga	CRISPR spacer
ttctctccgtgatttcttcttctgcttcga	Protospacer
**..**.****************.******

10. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053959 (Staphylococcus capitis strain FDAARGOS_753 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.833

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgcg	Protospacer
**.*..*****.**************.***

11. spacer 1.1|158025|29|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to MN693449 (Marine virus AFVG_25M25, complete genome) position: , mismatch: 6, identity: 0.793

attagaaatgttagtccctaagttacaga	CRISPR spacer
attagtaatgttagttcctaagtaatgta	Protospacer
***** *********.******* *.. *

12. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015175 (Staphylococcus aureus strain RIVM6519 plasmid pRIVM6519-2, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

13. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033113 (Staphylococcus aureus strain ST20130944 plasmid pST20130944, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

14. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NC_005054 (Staphylococcus aureus plasmid pLW043, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

15. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NC_015173 (Staphylococcus simulans bv. staphylolyticus strain NRRL B-2628 plasmid pACK2, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgtttttgtcctgtatgtgct	Protospacer
**.*..***** **************.**

16. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NC_005208 (Staphylococcus warneri plasmid pPI-2 DNA, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

17. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to CP030614 (Staphylococcus aureus strain ER01560.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

18. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033115 (Staphylococcus aureus strain ST20130945 plasmid pST20130945, complete sequence) position: , mismatch: 6, identity: 0.8

-tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
atgta-aaatcgattttgtcctgtatgtgca	Protospacer
 **.* .*****.**************.**.

19. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NC_012547 (Staphylococcus aureus plasmid pGO1, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

20. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NC_005024 (Staphylococcus aureus plasmid pSK41, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

21. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NC_013342 (Staphylococcus aureus plasmid SAP079A, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

22. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NC_013344 (Staphylococcus aureus plasmid SAP082A, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

23. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NC_025022 (Staphylococcus aureus subsp. aureus strain SM52 plasmid pSM52, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtctgcgct	Protospacer
**.*..*****.*********** *****

24. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047823 (Staphylococcus aureus strain UP_1278 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

25. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NC_007165 (Staphylococcus warneri plasmid pSW174, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

26. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NC_007166 (Staphylococcus warneri plasmid pSW49, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

27. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017321 (Staphylococcus aureus strain MI plasmid pMI, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

28. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to AP012550 (Staphylococcus aureus plasmid pN315G DNA, complete sequence, strain: N315G) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

29. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026963 (Staphylococcus aureus strain FDAARGOS_6 plasmid unnamed1) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

30. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NC_013372 (Staphylococcus epidermidis plasmid SAP016A, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

31. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029170 (Staphylococcus aureus strain PTDrAP2 plasmid pPTDrAP2c, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtctgcgct	Protospacer
**.*..*****.*********** *****

32. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029171 (Staphylococcus aureus strain PTDrAP2 plasmid pPTDrAP2d, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtctgcgct	Protospacer
**.*..*****.*********** *****

33. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040620 (Staphylococcus aureus strain J01 plasmid pJ01-01, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtctgcgct	Protospacer
**.*..*****.*********** *****

34. spacer 1.2|158090|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH587578 (Staphylococcus aureus strain WG1647 plasmid pWBG615, complete sequence) position: , mismatch: 6, identity: 0.8

tgcaggaatcggttttgtcctgtatgcgcg	CRISPR spacer
tgtaaaaatcgattttgtcctgtatgtgca	Protospacer
**.*..*****.**************.**.

35. spacer 1.4|158222|29|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to KY744231 (Sulfolobus islandicus rod-shaped virus 4, partial genome) position: , mismatch: 6, identity: 0.793

cattaactgctttgtcaaactcactaatt	CRISPR spacer
catttactgctttctcaaactcaaatttt	Protospacer
**** ******** *********    **

36. spacer 1.5|158287|30|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to MG592459 (Vibrio phage 1.084.O._10N.261.49.F5, partial genome) position: , mismatch: 6, identity: 0.8

ggaaaatgtggtaatgaaggaggattttga	CRISPR spacer
ggttcaggtggtgatggaggaggattttga	Protospacer
**   * *****.***.*************

37. spacer 1.10|158617|30|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to MF288922 (Bacillus phage Janet, complete genome) position: , mismatch: 6, identity: 0.8

tttccttcgtgatttcttcttctacttcga	CRISPR spacer
ttatcttagtgatttcttcttctagttcac	Protospacer
** .*** **************** ***.

38. spacer 1.4|158222|29|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to MK448891 (Streptococcus phage Javan266, complete genome) position: , mismatch: 7, identity: 0.759

cattaactgctttgtcaaactcactaatt	CRISPR spacer
gtttaactgccttgtcaatctcactgaca	Protospacer
  ********.******* ******.*.

39. spacer 1.7|158419|31|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to AB797215 (Klebsiella phage 0507-KN2-1 DNA, complete genome) position: , mismatch: 7, identity: 0.774

cgtcgatttcgacataatcaatcgccttatg	CRISPR spacer
cgtcgatttcgaaattatcaatcggaacctg	Protospacer
************ ** ********   . **

40. spacer 1.7|158419|31|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to MG428990 (Klebsiella phage Menlow, complete genome) position: , mismatch: 7, identity: 0.774

cgtcgatttcgacataatcaatcgccttatg	CRISPR spacer
cgtcgatttcgaaattatcaatcggaacctg	Protospacer
************ ** ********   . **

41. spacer 1.9|158551|30|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026317 (Vibrio campbellii strain BoB-90 plasmid unnamed 1, complete sequence) position: , mismatch: 7, identity: 0.767

tgagcctttatcatttagaacagctagagt	CRISPR spacer
tttaactttatcatttataacagcttgagc	Protospacer
*  . ************ ******* ***.

42. spacer 1.10|158617|30|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to MN693991 (Marine virus AFVG_250M861, complete genome) position: , mismatch: 7, identity: 0.767

tttccttcgtgatttcttcttctacttcga	CRISPR spacer
cctcttcagtgatttcttcttcgacttcgg	Protospacer
..**.*. ************** ******.

43. spacer 1.10|158617|30|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to MN692996 (Marine virus AFVG_117M70, complete genome) position: , mismatch: 7, identity: 0.767

tttccttcgtgatttcttcttctacttcga	CRISPR spacer
cctcttcagtgatttcttcttcgacttcgg	Protospacer
..**.*. ************** ******.

44. spacer 1.10|158617|30|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to MN694291 (Marine virus AFVG_250M864, complete genome) position: , mismatch: 7, identity: 0.767

tttccttcgtgatttcttcttctacttcga	CRISPR spacer
cctcttcagtgatttcttcttcgacttcgg	Protospacer
..**.*. ************** ******.

45. spacer 1.10|158617|30|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to MN694613 (Marine virus AFVG_250M1003, complete genome) position: , mismatch: 7, identity: 0.767

tttccttcgtgatttcttcttctacttcga	CRISPR spacer
attttttcttgatttcttcttcttcttctt	Protospacer
 **..*** ************** ****

46. spacer 1.10|158617|30|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to MN694083 (Marine virus AFVG_250M863, complete genome) position: , mismatch: 7, identity: 0.767

tttccttcgtgatttcttcttctacttcga	CRISPR spacer
cctcttcagtgatttcttcttcgacttcgg	Protospacer
..**.*. ************** ******.

47. spacer 1.10|158617|30|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to MN693818 (Marine virus AFVG_250M1205, complete genome) position: , mismatch: 7, identity: 0.767

tttccttcgtgatttcttcttctacttcga	CRISPR spacer
cctcttcagtgatttcttcttcgacttcgg	Protospacer
..**.*. ************** ******.

48. spacer 1.10|158617|30|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to MN694793 (Marine virus AFVG_250M862, complete genome) position: , mismatch: 7, identity: 0.767

tttccttcgtgatttcttcttctacttcga	CRISPR spacer
cctcttcagtgatttcttcttcgacttcgg	Protospacer
..**.*. ************** ******.

49. spacer 1.10|158617|30|NZ_QEJI01000002|CRISPRCasFinder,CRT,PILER-CR matches to MN693817 (Marine virus AFVG_250M336, complete genome) position: , mismatch: 7, identity: 0.767

tttccttcgtgatttcttcttctacttcga	CRISPR spacer
cctcttcagtgatttcttcttcgacttcgg	Protospacer
..**.*. ************** ******.

50. spacer 1.4|158222|29|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NC_008376 (Geobacillus phage GBSV1, complete genome) position: , mismatch: 8, identity: 0.724

cattaactgctttgtcaaactcactaatt	CRISPR spacer
gattaactgctttttcaaattcacaggag	Protospacer
 ************ *****.**** ..

51. spacer 1.4|158222|29|NZ_QEJI01000002|PILER-CR,CRISPRCasFinder,CRT matches to NC_009737 (Bacillus virus 1, complete genome) position: , mismatch: 8, identity: 0.724

cattaactgctttgtcaaactcactaatt	CRISPR spacer
gattaactgctttttcaaattcacaggag	Protospacer
 ************ *****.**** ..

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage