CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_QZDI01000069	Pectobacterium carotovorum strain S4.16.03.1C contig_69, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000002	Pectobacterium carotovorum strain S4.16.03.1C contig_2, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000041	Pectobacterium carotovorum strain S4.16.03.1C contig_41, whole genome shotgun sequence	3 crisprs	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	17	0	0
NZ_QZDI01000045	Pectobacterium carotovorum strain S4.16.03.1C contig_45, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000050	Pectobacterium carotovorum strain S4.16.03.1C contig_50, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000064	Pectobacterium carotovorum strain S4.16.03.1C contig_64, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000033	Pectobacterium carotovorum strain S4.16.03.1C contig_33, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000072	Pectobacterium carotovorum strain S4.16.03.1C contig_72, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000021	Pectobacterium carotovorum strain S4.16.03.1C contig_21, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000009	Pectobacterium carotovorum strain S4.16.03.1C contig_9, whole genome shotgun sequence	1 crisprs	DEDDh	0	0	0
NZ_QZDI01000018	Pectobacterium carotovorum strain S4.16.03.1C contig_18, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000062	Pectobacterium carotovorum strain S4.16.03.1C contig_62, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000013	Pectobacterium carotovorum strain S4.16.03.1C contig_13, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000037	Pectobacterium carotovorum strain S4.16.03.1C contig_37, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000031	Pectobacterium carotovorum strain S4.16.03.1C contig_31, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000071	Pectobacterium carotovorum strain S4.16.03.1C contig_71, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000055	Pectobacterium carotovorum strain S4.16.03.1C contig_55, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000040	Pectobacterium carotovorum strain S4.16.03.1C contig_40, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000061	Pectobacterium carotovorum strain S4.16.03.1C contig_61, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000051	Pectobacterium carotovorum strain S4.16.03.1C contig_51, whole genome shotgun sequence	0 crisprs	DEDDh	0	1	0
NZ_QZDI01000008	Pectobacterium carotovorum strain S4.16.03.1C contig_8, whole genome shotgun sequence	0 crisprs	csa3,cas3	0	0	0
NZ_QZDI01000003	Pectobacterium carotovorum strain S4.16.03.1C contig_3, whole genome shotgun sequence	1 crisprs	NA	0	1	4
NZ_QZDI01000043	Pectobacterium carotovorum strain S4.16.03.1C contig_43, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000038	Pectobacterium carotovorum strain S4.16.03.1C contig_38, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000024	Pectobacterium carotovorum strain S4.16.03.1C contig_24, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000054	Pectobacterium carotovorum strain S4.16.03.1C contig_54, whole genome shotgun sequence	0 crisprs	cas3	0	1	0
NZ_QZDI01000010	Pectobacterium carotovorum strain S4.16.03.1C contig_10, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_QZDI01000060	Pectobacterium carotovorum strain S4.16.03.1C contig_60, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000016	Pectobacterium carotovorum strain S4.16.03.1C contig_16, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000001	Pectobacterium carotovorum strain S4.16.03.1C contig_1, whole genome shotgun sequence	1 crisprs	DEDDh	0	1	0
NZ_QZDI01000011	Pectobacterium carotovorum strain S4.16.03.1C contig_11, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000048	Pectobacterium carotovorum strain S4.16.03.1C contig_48, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000039	Pectobacterium carotovorum strain S4.16.03.1C contig_39, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000007	Pectobacterium carotovorum strain S4.16.03.1C contig_7, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000004	Pectobacterium carotovorum strain S4.16.03.1C contig_4, whole genome shotgun sequence	0 crisprs	csa3	0	0	0
NZ_QZDI01000074	Pectobacterium carotovorum strain S4.16.03.1C contig_74, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000057	Pectobacterium carotovorum strain S4.16.03.1C contig_57, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000012	Pectobacterium carotovorum strain S4.16.03.1C contig_12, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000063	Pectobacterium carotovorum strain S4.16.03.1C contig_63, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000058	Pectobacterium carotovorum strain S4.16.03.1C contig_58, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000049	Pectobacterium carotovorum strain S4.16.03.1C contig_49, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000028	Pectobacterium carotovorum strain S4.16.03.1C contig_28, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000025	Pectobacterium carotovorum strain S4.16.03.1C contig_25, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000023	Pectobacterium carotovorum strain S4.16.03.1C contig_23, whole genome shotgun sequence	0 crisprs	cas3	0	0	0
NZ_QZDI01000014	Pectobacterium carotovorum strain S4.16.03.1C contig_14, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_QZDI01000006	Pectobacterium carotovorum strain S4.16.03.1C contig_6, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000067	Pectobacterium carotovorum strain S4.16.03.1C contig_67, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000005	Pectobacterium carotovorum strain S4.16.03.1C contig_5, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_QZDI01000027	Pectobacterium carotovorum strain S4.16.03.1C contig_27, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000047	Pectobacterium carotovorum strain S4.16.03.1C contig_47, whole genome shotgun sequence	0 crisprs	cas3	0	0	0
NZ_QZDI01000073	Pectobacterium carotovorum strain S4.16.03.1C contig_73, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000020	Pectobacterium carotovorum strain S4.16.03.1C contig_20, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000019	Pectobacterium carotovorum strain S4.16.03.1C contig_19, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000068	Pectobacterium carotovorum strain S4.16.03.1C contig_68, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000059	Pectobacterium carotovorum strain S4.16.03.1C contig_59, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000036	Pectobacterium carotovorum strain S4.16.03.1C contig_36, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000053	Pectobacterium carotovorum strain S4.16.03.1C contig_53, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000032	Pectobacterium carotovorum strain S4.16.03.1C contig_32, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000052	Pectobacterium carotovorum strain S4.16.03.1C contig_52, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000046	Pectobacterium carotovorum strain S4.16.03.1C contig_46, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000017	Pectobacterium carotovorum strain S4.16.03.1C contig_17, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000015	Pectobacterium carotovorum strain S4.16.03.1C contig_15, whole genome shotgun sequence	1 crisprs	NA	0	1	0
NZ_QZDI01000065	Pectobacterium carotovorum strain S4.16.03.1C contig_65, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000030	Pectobacterium carotovorum strain S4.16.03.1C contig_30, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000029	Pectobacterium carotovorum strain S4.16.03.1C contig_29, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	0
NZ_QZDI01000034	Pectobacterium carotovorum strain S4.16.03.1C contig_34, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000042	Pectobacterium carotovorum strain S4.16.03.1C contig_42, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000056	Pectobacterium carotovorum strain S4.16.03.1C contig_56, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000026	Pectobacterium carotovorum strain S4.16.03.1C contig_26, whole genome shotgun sequence	0 crisprs	DinG	0	0	0
NZ_QZDI01000066	Pectobacterium carotovorum strain S4.16.03.1C contig_66, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000035	Pectobacterium carotovorum strain S4.16.03.1C contig_35, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000022	Pectobacterium carotovorum strain S4.16.03.1C contig_22, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000044	Pectobacterium carotovorum strain S4.16.03.1C contig_44, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_QZDI01000070	Pectobacterium carotovorum strain S4.16.03.1C contig_70, whole genome shotgun sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

44705 : 52517

Mycobacterium_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_119872185.1\|44705_45569_+	polyamine aminopropyltransferase	A0A1C9C533	Heterosigma_akashiwo_virus	2.5e-18	32.7
WP_014916293.1\|45613_46408_+	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_014916295.1\|47099_47339_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	9.1e-19	59.5
WP_010280810.1\|47348_47756_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	S5MA49	Bacillus_phage	1.0e-09	35.5
WP_051902877.1\|47752_49900_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	2.9e-204	51.2
WP_014916297.1\|49924_50887_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	3.0e-137	73.6
WP_010280817.1\|51259_51997_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	8.5e-39	38.4
WP_039280691.1\|52052_52517_+	ribonuclease HI	J9Q745	Salmonella_phage	3.7e-48	56.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_QZDI01000015

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CRISPR-Cas detection and classification

Crispr_ID: NZ_QZDI01000015_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_QZDI01000015_1

261969-262065

Orphan

Consensus_repeat	Method
TGTCCGTCACCCTGCGGGCCGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_QZDI01000015_1

>merge|NZ_QZDI01000015|1|261969-262065|CRISPRCasFinder
TGTCCGTCACCCTGCGGGCCGTTGCTGCGCAACGTTGAAAAATGCTCCCGGCGTTTTTTTATGACGGACGTCCTTGTCCGTCACCCTGCGGGCCGTT

>NZ_QZDI01000015|1|1|261969-262065|CRISPRCasFinder
TGTCCGTCACCCTGCGGGCCGTT	GCTGCGCAACGTTGAAAAATGCTCCCGGCGTTTTTTTATGACGGACGTCCT
TGTCCGTCACCCTGCGGGCCGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_QZDI01000015.1\|WP_104212559.1\|270870_271233_+\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|226074
NZ_QZDI01000015.1\|WP_039504345.1\|255257_256667_+\|glucuronate-isomerase	unknown	unknown	gnl\|CDD\|376859
NZ_QZDI01000015.1\|WP_104212558.1\|273535_274924_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|182112
NZ_QZDI01000015.1\|WP_010282967.1\|262152_263106_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|274743
NZ_QZDI01000015.1\|WP_119871161.1\|265753_267829_-\|NADPH-dependent-2,4-dienoyl-CoA-reductase	unknown	unknown	gnl\|CDD\|239240
NZ_QZDI01000015.1\|WP_014914090.1\|271549_273466_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273919
NZ_QZDI01000015.1\|WP_119871158.1\|258355_259846_+\|altronate-dehydratase	unknown	unknown	gnl\|CDD\|377287
NZ_QZDI01000015.1\|WP_119871159.1\|260549_261797_-\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
NZ_QZDI01000015.1\|WP_014914081.1\|259935_260466_+\|YgjV-family-protein	unknown	unknown	gnl\|CDD\|378474
NZ_QZDI01000015.1\|WP_119871157.1\|253541_254843_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
NZ_QZDI01000015.1\|WP_119871156.1\|250562_250967_-\|DUF1090-domain-containing-protein	unknown	unknown	gnl\|CDD\|368932
NZ_QZDI01000015.1\|WP_039555545.1\|256869_258336_+\|tagaturonate-reductase	unknown	unknown	gnl\|CDD\|235147
NZ_QZDI01000015.1\|WP_010282972.1\|268043_268340_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QZDI01000015.1\|WP_014914087.1\|268526_269015_+\|ATP-independent-periplasmic-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|182473
NZ_QZDI01000015.1\|WP_014914076.1\|251370_252054_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_QZDI01000015.1\|WP_039282370.1\|252555_253332_-\|transcriptional-regulator-ExuR	unknown	unknown	gnl\|CDD\|183176
NZ_QZDI01000015.1\|WP_119871160.1\|264519_265659_+\|23S-rRNA-(guanine(1835)-N(2))-methyltransferase-RlmG	unknown	unknown	gnl\|CDD\|184963
NZ_QZDI01000015.1\|WP_104212563.1\|263359_264358_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_QZDI01000015.1\|WP_104212560.1\|269330_270800_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_QZDI01000015.1\|WP_039504343.1\|250972_251368_-\|EnvZ/OmpR-regulon-moderator-MzrA	unknown	unknown	gnl\|CDD\|236728

Protein	Function_ID	Function_description	E-value
NZ_QZDI01000015.1\|WP_104212559.1\|270870_271233_+\|DUF305-domain-containing-protein	gnl\|CDD\|226074	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown].	2.17788e-23
NZ_QZDI01000015.1\|WP_039504345.1\|255257_256667_+\|glucuronate-isomerase	gnl\|CDD\|376859	pfam02614, UxaC, Glucuronate isomerase. This is a family of Glucuronate isomerases also known as D-glucuronate isomerase, uronic isomerase, uronate isomerase, or uronic acid isomerase, EC:5.3.1.12. This enzyme catalyzes the reactions: D-glucuronate <=> D-fructuronate and D-galacturonate <=> D-tagaturonate. It is not however clear where the experimental evidence for this functional assignment came from and thus this family has no literature reference.	0
NZ_QZDI01000015.1\|WP_104212558.1\|273535_274924_-\|6-phospho-beta-glucosidase	gnl\|CDD\|182112	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional.	0
NZ_QZDI01000015.1\|WP_010282967.1\|262152_263106_-\|TerC-family-protein	gnl\|CDD\|274743	TIGR03718, R_switched_Alx, integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.	1.36761e-141
NZ_QZDI01000015.1\|WP_119871161.1\|265753_267829_-\|NADPH-dependent-2,4-dienoyl-CoA-reductase	gnl\|CDD\|239240	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provides a hydrid ion to the C5 atom of substrate, and Tyr and His are proposed to form a catalytic dyad that protonates the C4 atom of the substrate and completes the reaction.	0
NZ_QZDI01000015.1\|WP_014914090.1\|271549_273466_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0
NZ_QZDI01000015.1\|WP_119871158.1\|258355_259846_+\|altronate-dehydratase	gnl\|CDD\|377287	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyze the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyzes D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.	0
NZ_QZDI01000015.1\|WP_119871159.1\|260549_261797_-\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
NZ_QZDI01000015.1\|WP_014914081.1\|259935_260466_+\|YgjV-family-protein	gnl\|CDD\|378474	pfam10688, Imp-YgjV, Bacterial inner membrane protein. This is a family of inner membrane proteins. Many of the members are YgjV protein.	3.59127e-53
NZ_QZDI01000015.1\|WP_119871157.1\|253541_254843_-\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.12504e-119
NZ_QZDI01000015.1\|WP_119871156.1\|250562_250967_-\|DUF1090-domain-containing-protein	gnl\|CDD\|368932	pfam06476, DUF1090, Protein of unknown function (DUF1090). This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.	2.25711e-30
NZ_QZDI01000015.1\|WP_039555545.1\|256869_258336_+\|tagaturonate-reductase	gnl\|CDD\|235147	PRK03643, PRK03643, tagaturonate reductase.	0
NZ_QZDI01000015.1\|WP_014914087.1\|268526_269015_+\|ATP-independent-periplasmic-protein-refolding-chaperone	gnl\|CDD\|182473	PRK10455, PRK10455, periplasmic protein; Reviewed.	6.5976e-73
NZ_QZDI01000015.1\|WP_014914076.1\|251370_252054_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.41925e-47
NZ_QZDI01000015.1\|WP_039282370.1\|252555_253332_-\|transcriptional-regulator-ExuR	gnl\|CDD\|183176	PRK11523, PRK11523, transcriptional regulator ExuR.	0
NZ_QZDI01000015.1\|WP_119871160.1\|264519_265659_+\|23S-rRNA-(guanine(1835)-N(2))-methyltransferase-RlmG	gnl\|CDD\|184963	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG.	0
NZ_QZDI01000015.1\|WP_104212563.1\|263359_264358_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.86048e-57
NZ_QZDI01000015.1\|WP_104212560.1\|269330_270800_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.666e-56
NZ_QZDI01000015.1\|WP_039504343.1\|250972_251368_-\|EnvZ/OmpR-regulon-moderator-MzrA	gnl\|CDD\|236728	PRK10629, PRK10629, EnvZ/OmpR regulon moderator MzrA.	6.67547e-47

>NZ_QZDI01000015.1|WP_119871159.1|260549_261797_-|serine/threonine-transporter-SstT
METQYSRFLQYITHGSLVKQILLGLAAGIILASLSTQAALAAGLLGTLFVGALKAVAPILVLVLVMASIANHQQGQKTNIRPVLFLYLIGTFSAALIAVVLSVLFPSTLALNAQAADITPPSGIVEVLEGLLMSVIANPIHALLNANYIGILVWAVGLGIAFRHGSDSTKNMINDASNAVTMIVRVVIRFAPLGIFGLVASTLAETGFGALWGYAHLLMVLIGGMLLVALVVNPLIVYWKIRSNPYPLVLRCLRESGVTAFFTRSSAANIPVNMELCRKLNLDEDTYSVAIPLGATINMAGAAITITVLTLAAAHTLGIQIDVPTALLLSVVASLCACGASGVAGGSLLLIPLACSMFGISNDIAMQVVAVGFIIGVLQDSAETAVNSSTDVMFIAAVCHAEDAKLAEKERLNLL
>NZ_QZDI01000015.1|WP_014914081.1|259935_260466_+|YgjV-family-protein
MTHYWIAQSVGVLAFLVGITMFFNRNDQKFKIQLSAYSAVIGLHFFLMGANAAGASALLNSARTLISLKTHNILVMFVFISLTLLFGLSGMNHAMELLPIAGTVASTWALFRTSGLTTRCVMWCSTACWVAHNIWLGSIGGSLIEGSFLLMNGFNIIRFWRMQQRGIDPFSVENKA
>NZ_QZDI01000015.1|WP_119871158.1|258355_259846_+|altronate-dehydratase
MQSIIKIHSLDNVAVALRDVEQGETVSVDSHTVTLQQPVVRGHKFALETLAPGEMITKYGLPIGHALVSIAPGEHIHSQNAKTNLSDLDEYQYQPEFLELPPQMGDRDVQLYRRKNGDVGIRNELWILPTVGCVNGIARQIQQRFLKETNDAEGIDGVYLFSHTFGCSQLGQDHENTRTMLQNMVRHPNAGAVLVIGLGCENNQVDAFRTTLGDFDSDRVTFMVCQQQDDEVEAGLERLHTLYEAMRHDKREPGKLSELKFGLECGGSDGLSGITANPLLGRFSDYLIANGGTTVLTEVPEMFGAERILMSRCRDEATFEKTVHMVNDFKQYFIAHDQPIYENPSPGNKAGGITTLEEKSLGCTQKAGQSKVVDVLKYGERLHTPGLNLLSAPGNDAVATSALAGAGCHMVLFSTGRGTPYGGFVPTVKLATNSELAKKKPHWIDFDAGRLIHDMPMDELLSQFVELIVEIADGKRTKNEVNDFRELAIFKSGVTL
>NZ_QZDI01000015.1|WP_039555545.1|256869_258336_+|tagaturonate-reductase
MQTLNRRNFPGRQHPDRVIQFGEGNFLRAFVDWQLDLLNEHTDLDAGIVVVRPIDSDFPPALDTQDGLYTTIIRGLNEQGEAVREPRLIRSVNREINVYRQFDEYLALAHDPNIRFVFSNTTEAGISYHAEDRLNDAPPVSFPAKLTRLLYERFCHFDGAADKGWVLLPCELIDYNGVALKELVLRYAAQWKLTPTFTAWLNDHNTFCSTLVDRIVTGYPRAEVEALQQEMGYQDTFWDTAEHFYLFVIQGPQWLAEELRLNKLDLNVRIVDDIKPYKERKVAILNGAHTALVPVAFLAGLDTVGESMNDALIGKFVEKTIAEEIVPVLDLPHDELTSFAQAVLSRFRNPFIQHQLLSISLNGMTKFRTRILPQLLTYRERHGELPARLTFALAALIAFYRGERSGEGDALQTYPLQDDAHWLERYSTLWAGVKENTVSLAELVNVVLRDADHWEQDLTQVPGLAAQVTEQLQTIVERGMRAAVEGYC
>NZ_QZDI01000015.1|WP_039504345.1|255257_256667_+|glucuronate-isomerase
MPQFLSEDFLLDSEFARRLYHEYAVDQPIFDYHCHLPPEQIAENYRFKNLYDIWLKGDHYKWRAMRTNGVPERLCTGDASDWEKFEAWAATVPHTIGNPLYHWTHLELRRPFGITGTLLSPSTAKDIWDRCNAMLERDDFTARGIMQQMNVKMVGTTDDPIDDLRHHKTVAQDSSFSIKVLPSWRPDKAFNIELATFNDYMAKLGEVSDTDIRRFSDLQTALTKRLDHFAAHGCKVSDHALDVVMFAEADDATLDSILARRLAGETLSEHEVAQFKTGVLVWLGAEYARRGWVQQYHIGALRNNNLRQFKLLGPDVGFDSINDRPLAQELSRLLSKQNEENLLPKTILYCLNPRDNEVLGTMIGNFQGEGMPGKMQFGSGWWFNDQKDGMQRQMTQLAQLGLLSRFVGMLTDSRSFLSYTRHEYFRRILCQMIGRWVEDGEAPADLPLLGEMVKNICFDNAKNYFAIEL
>NZ_QZDI01000015.1|WP_119871157.1|253541_254843_-|MFS-transporter
MRKIKGLRWYMIGLVTIGTVLGYLTRNAISVAAPTLQDQLHITTQQYSYIVAAYSACYTIMQPIAGYVLDLLGTKIGYAMFAILWAIFCMGTALANSWGGLAIARGAVGMAEAAMIPAGLKASSEWFPAKERSVAVGYFNVGSSIGAMIAPPLVVWAIVAHSWEMAFIITGALSLIWAICWLIFYKHPKDQKKLSDEERNYILSGQEAQHQTNNAKKMSAWQILRNRQFWGIALPRFLAEPAWGTFNAWIPLFMFKAYGFNLKEIAMFAWMPMLFADIGCILGGYLPMLFQKYFKVNLIVSRKMVVTMGAVLMIAPGMIGLFSSPYVAIALLCVGGFAHQSLSGALITLSSDVFGRNEVATANGLTGMAAWMASTMFALVVGALADTLGFSPLFAALAVFDLLGAVVIWTVLKNQPASEVAATAETLKEANQH
>NZ_QZDI01000015.1|WP_039282370.1|252555_253332_-|transcriptional-regulator-ExuR
MALTEPRRLYQQLAAELKQRIESGMYQVGEKLPAERYISEEMNVSRTVVREAIIMLEVEGYVEVRKGSGIHVISNQQKNPFINSGDNEFVAAGPFELLQARQLIESNIAEFAATQVTRQDIIQLMEIQEYARQEDRFRDSQWDLKFHVQVALATQNSAMATIVEKMWSQRIHNPYWRKLHEHIDDKSIESWCEEHDRILKALIRKDPYAAKLAMWQHLENTKQMLFRATTDDFEFNVDRYMFAENPVVHLDQIHTGKS
>NZ_QZDI01000015.1|WP_014914076.1|251370_252054_-|DedA-family-protein
MELIKELLNALWHQDFDILADPKLVWTIYILLFLIIFLENGLLPAAFLPGDSLLILVGVLVAKGTMNYPFTIFLLTTAASLGCWASYIQGRWLGNTGVVQGWLSHLPAHYHQRAHQLFHRHGLSALLVGRFLAFVRTLLPTIAGLSGLNNARFQFFNWMSGFLWVFILVTLGFALGKTTVFLKYEDELMFCLMMLPLVLLFIGLFGSLFVLWRKKRDAKADNAEKGS
>NZ_QZDI01000015.1|WP_039504343.1|250972_251368_-|EnvZ/OmpR-regulon-moderator-MzrA
MSISGLFSKLFSRKAGRILLLLALPMIALTQSQSLRRSQDDAMLHIKPYDGAALPDGFYVYQRLNEKGIAIKSITPEQDSLIVRLASPEQSIAARDVLRLSLPKVTITAQQVTTPTPFWQQKLTQKQSKLG
>NZ_QZDI01000015.1|WP_119871156.1|250562_250967_-|DUF1090-domain-containing-protein
MKLSPSKLSPSIIALSVLLSSHALANTANQVETCQQKAQDIQRQIDEARKHGNQNRINGLEKALDGVKTHCTDAGLAEKRQEEIAEKRKDVAERQKELNESRQKGDDAEKILKRERKLAEAEQELRAAERGTSQ
>NZ_QZDI01000015.1|WP_010282967.1|262152_263106_-|TerC-family-protein
MHTIGTPWLWGSFAAIVIVMLAIDLLYQGRKGSTVMTFKQAAVWSIIWVTLSLLFNAGFWWYLDGTMGREVANAQSLAFLTGYLIEKALAVDNVFVWLMLFGYFAVPPQYQRRVLIYGVLGAIVLRTLMVFGGSWLVTQFQWLLYVFGAFLLFTGLKMALAKEDGGAIGDKPLVRWLRSRLRMTDSIENEKFFVRRNGILYATPLFLVLIMVEISDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERFSLLKYGLAVILIFIGTKMMLIDIFHIPVAISLGVVASILVITMLINVWVNKRAER
>NZ_QZDI01000015.1|WP_104212563.1|263359_264358_-|Gfo/Idh/MocA-family-oxidoreductase
MIRFAIVGTSWITRQFVDAAHETGKLKLTAIYSRTAEKAQPFQADYMVDTLFDSLEAMAKSDLIDAVYLASPNSLHCEQALLFLSHGKHVICEKPLASNRYEVEQMIACARENQVVLFEAFKTASLPNFSVIQQALPKVGRLRKVVLNYCQYSSRYPLYLAGENPNTFNPAFSNGSIMDIGYYCLAFAVALWGEPCTTQASATLLESGVDAHGSIILNYGDFDVTIVHSKVSHSAIPSEIQGEDGSLVIEKVSECHNVKFIPREGKQVDLSQPQHINSMLYEAEVFATLVNDNDINHAELARSRTVAGLLTEIRRQTGVVFPADAATPGNAE
>NZ_QZDI01000015.1|WP_119871160.1|264519_265659_+|23S-rRNA-(guanine(1835)-N(2))-methyltransferase-RlmG
MSQLELETCNLTLVRYPQVAENSALQAWDAADEYLLRELATMEIAPGPRLIFNDAFGALACGLQAQSPVSISDSYLSQLATRHNLELNGYAVDAVTLLDSMAELPDAPALVVIKIPKTIALLEHQLRMLRKVVTPQTRIIAGAKARDIHTSTLQLFERVMGPTKTSLAWKKARLVHCEWAELKVSEQPLTTEWELDGYGYRIQNLANVYSRNGLDIGARFFMQHLPEQIDGKIIDLGCGNGVIGLAALKANPEATVGFFDESYMAVASSQTNVEVNCPQDVERCSFVVNHGLARVKRDTLQAVLCNPPFHQQQAVTDEIAWQMFMDARRCLQVGGELRIVGNRHLDYFHKLKRLFGNCETLASNTKFAVLRAVKTGSSR
>NZ_QZDI01000015.1|WP_119871161.1|265753_267829_-|NADPH-dependent-2,4-dienoyl-CoA-reductase
MTAYPTLLSPLDLGFTTLKNRVVMGSMHTGLEEHPDGTERLAAFYRERAQGGVGLIVTGGIAPNAKGAVAKGGATLHDEAQLAHHQVLTQAVHDAGGKIALQILHAGRYSYQPDPVAPSAIQAPINRFAPREMSTQDIVQTIDDFARCAALAQQAGYDGVEIMGSEGYLINQFLVTHTNHRDDEWGGDFQRRSRFALEIVRAVRERTGPDFILIYRLSMLDLIEEGSSWQEIVQLAQAIEQAGATLINTGIGWHEARIPTIATLVPRGAFGWVTQKLMGKVRIPLITTNRINDPGVAEQLLAEGCADMVSMARPFLADAELVAKAQSGRADEINTCIGCNQACLDQIFAGKVTSCLVNPRACHETELPIQPARVGKRFAVVGAGPAGMAFAVNAAARGHQVTLFESSSYIGGQFNIAKQIPGKAEFYETLRYYRRQLALLGVTLRLSTQATAADLLGFDDVILACGIVPRIPAIAGIDHPSVLSYLDVLRDKKPVGKRVAIIGAGGIGFDTAHYLLNNTHYLLNNNSLPNDSHRLNPQSSQAGHNDFYAEWGIDKQLQHRGGLLPQQPDALPHQRDITLLQRKTGKPGENLGKTTGWIHRTTLLRHGVTLLGGVEYHHIDDEGLHIIHDQQMRCLPVDNIIICAGQEPNRKLYDPLLAAGCHVHLIGGADVAQELDARRAIEQATRLALIL
>NZ_QZDI01000015.1|WP_010282972.1|268043_268340_+|hypothetical-protein
MRVEELEYRLDSALRALEQSVQRQQQTWRQEHQSLQQQLLQAKERDAYLCAQIERLSAQLSSMDSSPERNPLIQKMKVVHAHLDVLAQEASAFRRSLR
>NZ_QZDI01000015.1|WP_014914087.1|268526_269015_+|ATP-independent-periplasmic-protein-refolding-chaperone
MRKLTAMLVASSLALGAAGIAHANDAPKGPGPEHKMMMKEGREHRGMMGPDAMFKELNLTEAQKQQIKDIMKESREKMHKAMQDDRRDMHSLVASDTFDAAKAQAQLDKADAAHKARMLNGLETKNKIYNVLTPEQKKQYNDNFEKRLTQPPKPDGKPVPAE
>NZ_QZDI01000015.1|WP_104212560.1|269330_270800_+|GGDEF-domain-containing-protein
MNHDLTLKTIKFMPLLFLTTLIVSCMGFRFRVLDELSLFWPANILVFCLMISFRARKGTITGKTLFICSGFLVSYVAMLSAALLMDNNSPLKTKVLLCLCNMVFVVTAWCAFFLMCRFTGKWSTFEKFTKYYVYIIFASTFVGAFLSGVAYGVYAYVYDTGNRYAEFMDWFSEQLGTGIILAFFFLRGKDILRALRNIPLCPKNIRENIFPFLVFIIFLLVSLFFLDASLITLSVIPLTLCAFNYSFTIMSLLCAITGVILNYLYINQVGILIDSNSEAYINSFLTTARLNIAMLIMAMLSVSHFVSMNRRLIKIIESNSLKDALTNTFNRRAFLSMLNGRQGVLMNKKKRQLTLLFLDIDYFKQVNDTYGHACGDELIASFARMLSATIRPSDILCRWGGEEFVIAAYDLTAEQSEAMAEALRRLTESTALTLSDGRKIHFTTSIGVAMFPQHEGGNIYDLIGLADEQLYKAKAQGRNRVCMRLVEEV
>NZ_QZDI01000015.1|WP_104212559.1|270870_271233_+|DUF305-domain-containing-protein
MKKIHLLLTAALLVPFLSFAADSAHSGHGAASDASSSQQAYMKGMDAMHTEMMEGMQSSDPDIAFAKGMIAHHRGAIDMAKTELQYGKDPELRKLAEEIIKAQQPEIDQMEAWLKKQNKP
>NZ_QZDI01000015.1|WP_014914090.1|271549_273466_+|PTS-transporter-subunit-EIIC
MNSKVLAENILRLVGGETNVSTLVHCATRLRFKIVDHGKVDVAALEALEGVITVINASGQLQVVIGNRVPEVYRAFGAISKLLEDGDGKRQTAESEASTSAMGRLIDLVAGIFTPLLGAMAAAGVLKGALAIVIALGWLNTKESTYVILHAASDSLFYFLPMLLAITSARKFETNIFVAVSIAGALVYPTIQGLFDAGQPVTFFGLPVVMMKYTSSVIPIIFSVWLMSYIERFLNRHIHESVRNILTPFFLLVLMVPLTLMTIGPIGISASKLIASVFVSIYSFNPIIAGALIAAAWQILVIFGVHWGFVTVFINDLSVMGHSYLKAASSPSVFAQSGALLGVMVRTKDKKLKALAGSTFIASLFGITEPGVYGVTLKLKKPFICAVIAAALGGAIVGYAKSSAISMGMPGLLTLPIFYGEGFIGFLIGCAIAFVASFVLTVIVGFDEPTQPAESTPAPTHSPTTTPAAPVSRQQANAVPLPLKDAPETAEQLGSPAKGELILLEEVNDKVFSSGVVGLGVAILPQEGRIYSPVDGMIASTFASGHAVGILSQKGAEILIHVGINTVQLEGQHYQMHVAEGDKVTKGQLLLEFDLDAIQKAGYDTVTPMVITNAEEYRVFSLGAARQQQAGETVIALA
>NZ_QZDI01000015.1|WP_104212558.1|273535_274924_-|6-phospho-beta-glucosidase
MKAFPDGFLWGGSVAANQVEGAWNEDGKGVSTSDLQLKGVHGPVTERDESISCIKDRAIDFYHQYPQDIQLFAEMGFKVLRTSIAWTRIYPEGDEAEPCEAGLAFYDRLFDEMAKHQIQPLITLSHYEMPYGLVKKLGGWGNHAVIDHFEKYARTVFSRYKDKVKYWLTFNEINMALHSPFTGIGLGGEPSKQEIYQAIHHQLVASARAVKACHDIIPDAKIGNMLLGAVRYPMTCHPKDVLEAQSKNREWLFFGDVQVRGTYPAWIQRYFRENGIELTITAQDKDDLSHTVDFVSFSYYMSGCATFEPEKYQSSRGNIIRLIPNPHLEASEWGWQIDPEGLRFLLNELYDRYQKPLFIVENGLGARDVVEEDGSIHDSYRIDYLRRHLIQVREAIDDGVELLGYTSWGPIDLVSAGTAQMSKRYGFIHVDRDDDGKGTLERRRKDSFYWYQDVINSNGKSL

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

285378 : 312376

Cronobacter_phage(70.37%)

portal,capsid,tail,head,terminase,holin,integrase

attL 285211:285259|attR 314684:314732

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
285211:285259	attL	NA	NA	NA	NA
WP_119871165.1\|285378_286395_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.4e-124	64.1
WP_119871166.1\|286394_286859_-	hypothetical protein	NA	NA	NA	NA
WP_119871167.1\|286860_287175_-	STAS-like domain-containing protein	A0A2H4J4X6	uncultured_Caudovirales_phage	5.2e-14	47.4
WP_119871168.1\|287179_288280_-	hypothetical protein	NA	NA	NA	NA
WP_119871169.1\|288297_288885_-	phage repressor protein CI	F1BUS8	Erwinia_phage	7.7e-35	41.9
WP_119871170.1\|289020_289251_+	regulator	NA	NA	NA	NA
WP_119871171.1\|289271_289775_+	hypothetical protein	F1BUN6	Cronobacter_phage	8.1e-41	53.7
WP_119871172.1\|289786_289990_+	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_119871173.1\|289992_290337_+	hypothetical protein	NA	NA	NA	NA
WP_119871174.1\|290411_290648_+	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	6.5e-09	46.1
WP_119871175.1\|290644_291562_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	2.5e-88	60.6
WP_119871176.1\|291627_291924_-	hypothetical protein	NA	NA	NA	NA
WP_119871177.1\|292012_293998_+	replication endonuclease	F1BUS0	Erwinia_phage	2.6e-223	62.0
WP_119871178.1\|294296_294617_-	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	1.5e-37	72.1
WP_119871179.1\|294625_295666_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	4.5e-155	77.8
WP_119871180.1\|295641_297417_-\|terminase	terminase	F1BUM5	Cronobacter_phage	3.0e-271	79.4
WP_119871181.1\|297580_298402_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	2.5e-71	55.0
WP_119871182.1\|298478_299519_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	2.1e-144	77.5
WP_119871183.1\|299520_300222_+\|terminase	terminase	F1BUM0	Cronobacter_phage	2.2e-68	56.0
WP_127110940.1\|300281_300770_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	6.2e-54	70.0
WP_119871185.1\|300766_301267_+\|tail	phage tail protein	NA	NA	NA	NA
WP_119871186.1\|301263_301968_+	hypothetical protein	F1BUL6	Cronobacter_phage	2.2e-84	67.1
WP_119871187.1\|301970_303113_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	4.2e-138	68.0
WP_119871188.1\|303109_303565_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	7.5e-54	68.9
WP_109463617.1\|303574_303868_+\|holin	holin	Q6K1I2	Salmonella_virus	2.1e-17	56.2
WP_119871189.1\|303864_304206_+	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	4.0e-44	81.2
WP_119871190.1\|304205_304562_+	hypothetical protein	F1BUL2	Cronobacter_phage	2.4e-23	58.5
WP_119871192.1\|304694_304952_+	hypothetical protein	A5X9I7	Aeromonas_virus	1.8e-20	59.3
WP_119871194.1\|305139_307107_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	2.7e-188	51.5
WP_119871195.1\|307106_307442_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	1.3e-34	69.9
WP_119871196.1\|307431_308616_+	hypothetical protein	F1BUK6	Cronobacter_phage	9.4e-157	70.1
WP_119871197.1\|308608_309241_+	hypothetical protein	F1BUK5	Cronobacter_phage	2.1e-54	57.7
WP_119871198.1\|311136_311859_+	hypothetical protein	F1BUK1	Cronobacter_phage	3.2e-46	45.0
WP_119871199.1\|311830_312376_+	hypothetical protein	F1BUJ9	Cronobacter_phage	8.7e-49	58.2
314684:314732	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_QZDI01000005

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

62361 : 69734

Mycoplasma_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_119870740.1\|62361_63669_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	2.7e-35	37.2
WP_010280073.1\|63883_64084_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_005970171.1\|64105_64441_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_119870741.1\|64442_66293_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.5e-103	41.7
WP_119870742.1\|66368_66887_-	co-chaperone HscB	NA	NA	NA	NA
WP_014916217.1\|66958_67282_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	2.7e-21	46.7
WP_005970177.1\|67362_67749_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.4e-53	77.3
WP_119870743.1\|67773_68988_-	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	7.4e-32	36.9
WP_010280087.1\|69239_69734_-	Fe-S cluster assembly transcriptional regulator IscR	M4M9K8	Vibrio_phage	4.1e-05	28.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_QZDI01000041

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CRISPR-Cas detection and classification

Crispr_ID: NZ_QZDI01000041_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_QZDI01000041_1

5297-5924

TypeI-F

I-F:NA

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRISPRCasFinder
NNNNNNNNNNTTTCTAAGCTNCCTATNCGG	CRT
TTTCTAAGCTGCCTATACGGCAGTGAAC	PILER-CR

10 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NZ_QZDI01000041_1

>merge|NZ_QZDI01000041|1|5297-5924|CRISPRCasFinder,CRT,PILER-CR
GCACTGAGCTGCCTGCACGGCAGTGAACCTCTTTATCTTCCAGTCGCACCCACGCGCCCTTTTCTAAACTGCTTATACGGCAGTGAACGTCTGGAGCATCAAACAAAGTGGCACCCCACGTTTCTAAGCTGCCTATGCGACAGTGAACACTGTCGGTCCCCTTCATCTGGTCCGGTGGCATTTCTAAGCTGCCTATGCGGCAGTGAACATGCAACCACCCTCCAGCTCTCTACAACTGCTTTTCTAAGCTGCCTATGCGGTAGTGAACAACAGCGGCCGGCTAATGAAGCCTTTCTGTATTTTCTAAGCTGCCTATACGGCAGTGAACTTTTTCCAGATGGTACAGACGTTTTCTAATCATTTCTAAGCTGCCTATACGGCAGTGAACGGTGATGGCCGACATCGCAGCAATTTTCCATTTTTCTAAGCTGCCTATACGGCAGTGAACGTTATGGTTTATGTTGGTGACATTTCGCGGCGTTTCTAAGCTACCTATACGGCAGTGAACACCGTCTTCTTTAATTCGCTGCGTCCAGTCAATTTCTAAGCTACCTATACGGCAGTGAACGCTCTGGCGTCCTTTATAGGCTTTCAGCGCCGTTTCTAAGCTACCTATACGGCAGTGAAC

>NZ_QZDI01000041|1|1|5297-5924|CRISPRCasFinder
GCACTGAGCTGCCTGCACGGCAGTGAAC	CTCTTTATCTTCCAGTCGCACCCACGCGCCCT
TTTCTAAACTGCTTATACGGCAGTGAAC	GTCTGGAGCATCAAACAAAGTGGCACCCCACG
TTTCTAAGCTGCCTATGCGACAGTGAAC	ACTGTCGGTCCCCTTCATCTGGTCCGGTGGCA
TTTCTAAGCTGCCTATGCGGCAGTGAAC	ATGCAACCACCCTCCAGCTCTCTACAACTGCT
TTTCTAAGCTGCCTATGCGGTAGTGAAC	AACAGCGGCCGGCTAATGAAGCCTTTCTGTAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTTTTCCAGATGGTACAGACGTTTTCTAATCA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GGTGATGGCCGACATCGCAGCAATTTTCCATT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTTATGGTTTATGTTGGTGACATTTCGCGGCG
TTTCTAAGCTACCTATACGGCAGTGAAC	ACCGTCTTCTTTAATTCGCTGCGTCCAGTCAA
TTTCTAAGCTACCTATACGGCAGTGAAC	GCTCTGGCGTCCTTTATAGGCTTTCAGCGCCG
TTTCTAAGCTACCTATACGGCAGTGAAC

>NZ_QZDI01000041|1|1|5357-5916|CRT
TTTCTAAACTGCTTATACGG	CAGTGAACGTCTGGAGCATCAAACAAAGTGGCACCCCACG
TTTCTAAGCTGCCTATGCGA	CAGTGAACACTGTCGGTCCCCTTCATCTGGTCCGGTGGCA
TTTCTAAGCTGCCTATGCGG	CAGTGAACATGCAACCACCCTCCAGCTCTCTACAACTGCT
TTTCTAAGCTGCCTATGCGG	TAGTGAACAACAGCGGCCGGCTAATGAAGCCTTTCTGTAT
TTTCTAAGCTGCCTATACGG	CAGTGAACTTTTTCCAGATGGTACAGACGT
TTTCTAATCATTTCTAAGCT	GCCTATACGGCAGTGAACGGTGATGGCCGACATCGCAGCAATTTTCCATT
TTTCTAAGCTGCCTATACGG	CAGTGAACGTTATGGTTTATGTTGGTGACATTTCGCGGCG
TTTCTAAGCTACCTATACGG	CAGTGAACACCGTCTTCTTTAATTCGCTGCGTCCAGTCAA
TTTCTAAGCTACCTATACGG	CAGTGAACGCTCTGGCGTCCTTTATAGGCTTTCAGCGCCG
TTTCTAAGCTACCTATACGG

>NZ_QZDI01000041|1|1|5417-5924|PILER-CR
TTTCTAAGCTGCCTATGCGACAGTGAAC	ACTGTCGGTCCCCTTCATCTGGTCCGGTGGCA
TTTCTAAGCTGCCTATGCGGCAGTGAAC	ATGCAACCACCCTCCAGCTCTCTACAACTGCT
TTTCTAAGCTGCCTATGCGGTAGTGAAC	AACAGCGGCCGGCTAATGAAGCCTTTCTGTAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTTTTCCAGATGGTACAGACGTTTTCTAATCA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GGTGATGGCCGACATCGCAGCAATTTTCCATT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTTATGGTTTATGTTGGTGACATTTCGCGGCG
TTTCTAAGCTACCTATACGGCAGTGAAC	ACCGTCTTCTTTAATTCGCTGCGTCCAGTCAA
TTTCTAAGCTACCTATACGGCAGTGAAC	GCTCTGGCGTCCTTTATAGGCTTTCAGCGCCG
TTTCTAAGCTACCTATACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_QZDI01000041.1\|WP_119872005.1\|6616_7627_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_QZDI01000041.1\|WP_119872007.1\|8569_9904_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_QZDI01000041.1\|WP_039283288.1\|1195_1738_-\|single-stranded-DNA-binding-protein-SSB1	unknown	unknown	gnl\|CDD\|236362
NZ_QZDI01000041.1\|WP_119872010.1\|17022_17433_+\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_QZDI01000041.1\|WP_119872008.1\|10296_13599_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_QZDI01000041.1\|WP_119872006.1\|7640_8573_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_QZDI01000041.1\|WP_094432328.1\|4837_5257_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|376651
NZ_QZDI01000041.1\|WP_119872004.1\|1987_4822_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_QZDI01000041.1\|WP_039278467.1\|17917_18325_+\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_QZDI01000041.1\|WP_119872003.1\|0_997_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372671
NZ_QZDI01000041.1\|WP_052902943.1\|6052_6607_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_QZDI01000041.1\|WP_119872009.1\|13595_14576_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_QZDI01000041.1\|WP_119872011.1\|17464_17872_+\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_QZDI01000041.1\|WP_158586010.1\|9940_10102_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_QZDI01000041.1\|WP_119872005.1\|6616_7627_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_QZDI01000041.1\|WP_119872010.1\|17022_17433_+\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	6.91772e-31
NZ_QZDI01000041.1\|WP_039283288.1\|1195_1738_-\|single-stranded-DNA-binding-protein-SSB1	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	1.20048e-109
NZ_QZDI01000041.1\|WP_119872008.1\|10296_13599_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_QZDI01000041.1\|WP_119872006.1\|7640_8573_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	9.30471e-156
NZ_QZDI01000041.1\|WP_119872007.1\|8569_9904_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	0
NZ_QZDI01000041.1\|WP_119872011.1\|17464_17872_+\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	1.46761e-39
NZ_QZDI01000041.1\|WP_119872004.1\|1987_4822_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_QZDI01000041.1\|WP_039278467.1\|17917_18325_+\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	1.46931e-32
NZ_QZDI01000041.1\|WP_119872003.1\|0_997_+\|IS3-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	4.63297e-29
NZ_QZDI01000041.1\|WP_052902943.1\|6052_6607_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.4589e-98
NZ_QZDI01000041.1\|WP_094432328.1\|4837_5257_+\|YjbQ-family-protein	gnl\|CDD\|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	1.75771e-59
NZ_QZDI01000041.1\|WP_119872009.1\|13595_14576_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0

>NZ_QZDI01000041.1|WP_094432328.1|4837_5257_+|YjbQ-family-protein
MWMQYEIRLKPKARGFHLVTDEILAQVTGLRQINVGLMQVFIKHTSAALTINENADPTVRQDFESFFNRLVPEDEPYYRHTYEGSDDMPAHLKGSLLGNSLTLPITNGRLNIGTWQGIYLCEHRNHGGNRSLVVTLHGE
>NZ_QZDI01000041.1|WP_119872004.1|1987_4822_+|excinuclease-ABC-subunit-UvrA
MDKIEVRGARTHNLKNINLIIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPEHDVPLDAQTVSQMVDNVLAQPEGKRLMLLAPIVKDRKGEHSKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALDLSGGSVVVADMDDPTQPELLFSANFACPVCGYSMHELEPRMFSFNNPAGACPSCDGLGVQQFFDPSRVVQNAELSLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDVDAPFESLSAAVQKVILYGSGKENVEFKYINDRGDTSVRRHPFEGVLHNMERRYKETESTAVREELAKFISNRSCASCGGTRLREEARNVFVEQTTLPQISDMSIGHAMTFFQNMKLSGQRAQIAEKVLKEIGDRLKFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQIVAEGTMEEIMAVPDSLTGQFLSGKRKIEIPQQRVPADPTKVLKLIGAKGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPLAQRQLNGATLAEPAAHREIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPEARTRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIQYKGKGIHEVLDMTIEEARGFFDAIPALARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKLSRELSKRGTGQTLYILDEPTTGLHFADIQQLLTVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEQSHTARFLWPILAREA
>NZ_QZDI01000041.1|WP_039283288.1|1195_1738_-|single-stranded-DNA-binding-protein-SSB1
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQNSAPAQSNEPPMDFDDDIPF
>NZ_QZDI01000041.1|WP_119872003.1|0_997_+|IS3-family-transposase
VHPINWKKKFGGMGVTELRRLRQLEEENHRLKRLVADLSLDKEMLQDVIRKKFLRPVQKREAVAYLLEAYRIGLRRGCRLMMQSRTVYHYRSCRDDRAITQRIREIAETRVRYGVQRIHTLLRREGWLINHKKTRRIYCQEGLNLRTKRPRRHVSARHRRARPGGSAIDQCWSMDFVADNLFNGRRIRALTVVDNFSRECLAIQVGQGLRGDDVVEVMERLKQLQKRVPGRLQTDNGSEFISKPLDQWAYENKVTMDFSRPGKPTDNALIESFNGSFRDECLNVHWFLSLEDAQEKVEYWRQEYNQQRPHSSLNNQTPEEFVRSLQKGPDL
>NZ_QZDI01000041.1|WP_052902943.1|6052_6607_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYIDIRVQPDPEFTASQLLNALFAKLHRALGQVADGKIGISFPDVGKTLGECLRLHGTKEALSTLEQTAWLKGLRDYTQVSECKTVPDGVKFRTVRRVQLKSSAERLRRRSVNKGWLTEAEAAARIPDAVEKRSALPFVQIKSLSNGQMFFVFVEHGPLQDAPIAGRFSSYGLSAEATVPWF
>NZ_QZDI01000041.1|WP_119872005.1|6616_7627_-|type-I-F-CRISPR-associated-protein-Csy3
MAKASTSLKTASVLAFERKLANSDAVMYAGNWAQQDNWTPIAIQEKSVRGTISNRLKNALTSDPAKLDAEIQKANLQTVDVAALPFGADTLKVVFTLRVLGNLAQPSVCNDQDYQTALGNIITGYAQGQGFGTLAARYAENIANGRFLWRNRVGAEAIRVVVTTGEQRWEFNGEDYSLRAFSQPTGDLAALAQAIEQGLAGDTSVLFTVEAYVQLGNGQEVFPSQELVLDEKARNGKSKILYQVNDVAAIHSQKIGNALRTVDDWYPAADEAGPIAVEPYGSVTSRGKAYRQPKEKMDFYTLLDNWVIKGDVPAPEQQHYVIATLIRGGVFGEKGE
>NZ_QZDI01000041.1|WP_119872006.1|7640_8573_-|type-I-F-CRISPR-associated-protein-Csy2
MSTLLILRRIKVENANAIAGLTYGFPAITHFLGFTHALSRKLQASHGLTLEGCGVVSHQHQLHAYGSSWERSFALTRNPLTKEAKTAAFNEEGRMHMTVSLLIRCEGQIPADTTALCDFLTQQAQCQRLAGGTIVDIERVTIQSLPSDEAETRKVMRRLLPGFVLKDRTSLLHDHFQTLQQDNPQAELVDAWLDFAALKMRAERDPNGSNVQWQYQPKPGGGGFLIPLMIGYRAISPLYAPGEVDKTRDPNTPFCFAEAAYGIGEWQGAHRISDIRQILWEYDYQNGDYHCRQLADTHSAAEDISYEFDD
>NZ_QZDI01000041.1|WP_119872007.1|8569_9904_-|type-I-F-CRISPR-associated-protein-Csy1
MGSEKLTEFILSYINNRKQAKLDAFDKEAEKKRAVLSGEALAAEELDLAEKRREIEQKHEVRAWLSDAASRAGQISLVTHALKFTHSDAKGTSVFSTGTVADAKTLSTATLAQPAIDAVGNAAALDVAKLLQTEHDGDSLVAALQRGDHRALEKLAENPEQLAQWLVGFQQVFTDRQPSSHKLAKQIYFPIANGEYHLLSPLYSSSLAQALHQRINAVRFGEEAKAIRQAQKANQWHEQLSISYPYLAVQNMGGTKPQNISSLNSSRSGRSYLLSSAPPQWNSIEKPPQQHDSIFRPRGEVDYHTRATLAQMQRFLLSVKEVENNRDIRQQRLRYLDQLIDQLFFYVASVQNLPSGWSAESELKRAQQLWLDPYRAETDTVFRREREAGDWQKAVAYDFGRWLNRRLKHEDLIFGEVERREWSTAALFKRRMREMESALKEDLA
>NZ_QZDI01000041.1|WP_158586010.1|9940_10102_-|hypothetical-protein
MKRVRTIWLAALLVAVLVVILCMKPMNMYINNQADSSAKGQQFSIFSLTINKI
>NZ_QZDI01000041.1|WP_119872008.1|10296_13599_-|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISECNKRALVETRRILDQFAERKGERTWQTAITQEGLNTLRKLLRKTARRNTAVACHWVRSANHTELLWIVGNLRRFNAQGSVPTNTTSRDILRSKDENPWHSAEVFSLLAAIAGLFHDVGKANALFQTGLSGTGPRSQPYRHEWVSLRLFQAFVGEQDDKGWLTALSTVTPEAEIPLLAALQRDKQTPSSSPFRTLPPLAQVIAWLIVSHHRLPVFNKSAELAPNSSEPQLDYAETWLTDHLSAQWNALNHCKLDVTPANLAQVWQFPHGTPLRSSVWREKARKFADRALKLPSFMHFAQLDQRLTVHLARLALMLADHHYSAGAATVGWQDMAYSVWANTDRKTGEYKQRLDEHCVGVGQNALLLGRSLPNLRDTLPAITRHKGFRQRSTHPRFRWQDRAFDLACSIRESSRQHGFFGVNMASTGRGKTFANARIMYGLSDETLGCRFSVALGLRTLTLQTGDALRQRLKLDEDDLAVLIGSQAVQDLHEMQLENETRQQNTAQTGSESADPLFSEHQYVRYDGSLDDGRLKTWLERSPTLHQLLSAPVLITTIDHLMPATESLRGGHQIAPMLRLLTSDLVLDEPDDFGLEDLPALCRLVNWAGMLGSRVLLSSATLPPALIRALFGAYLDGRAAWQQAYGTPNTPLNVCCGWFDEFDCQHEQYGDVKGFITRHDAFVQQRLKHLTKEELPLRLASIVPVSSPSKNKDDVHLAVAQAIHPLLRDLHSQHHQQHKSGKTASLGLVRMANINPLVAVARQLLAIPSPPDTCIHYCIYHSQHPLAMRSYIEQRLDAALMRNDADALWQVDEIRQAIENAPQQHHIFVVLATSVAEVGRDHDYDWAIVEPSSMRSFIQLAGRILRHRQDEQHVPKMPNICLLSHNIRALKDEDVAYCKPGFESDDEQLTTHDLRQLLQEEDYRHLNAAPRIVQPAPLTKPFSLVALEHAVLGKTLLGLTNQKLDDLKRPPAAFWWRAHPHWNGELQRRTPFRKSDRDEPYTLWIADDDEDAVFMIPDDGPSKWKQSDVIRPTSLHMAEGVCAWIDPDYHALYQRLADEKQWELKRVSARFGEIRLREKEEKDWLWHPLLGVFGALN
>NZ_QZDI01000041.1|WP_119872009.1|13595_14576_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDNAFSPSDLKTILHSKRANVYYLQHCRILVNGGRVEYVTEEGNQSLYWNIPIANTSVVMLGTGTSVTQAAMREFARAGVMIGFCGGGGTPLFAANEAEVAVSWLSPQSEYRPTEYLQDWVSFWFDDEKRLAAAIAFQQVRIIQIRQHWLGSRLSRESRFTFKADHLQALLDRYEKGLTDCRTSNDVLVQEAMMTKALYKLAANAVSYGDFTRAKRGGGTDLANRFLDHGNYLAYGLAAVATWVLGLPHGLAVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMEGEDEQEFRQRCLTAFQQSEALDVMIGSLQDVASKLSQVGR
>NZ_QZDI01000041.1|WP_119872010.1|17022_17433_+|DUF1240-domain-containing-protein
MVKINRPFFFIYSVFIFLLSCWGGWFSLSGYIDFFNLNDVISFSWKLGVIIFLVPIVFQFSYFGFFSAVKNRPIKMNNKISNALVIFAIFGTVVSLFSSMYISYSLNEQGYKICPKNSWIAPNKYVRNIALCKEQM
>NZ_QZDI01000041.1|WP_119872011.1|17464_17872_+|DUF1240-domain-containing-protein
MVKVNRPLVGAFAVFLFFISCFISWISFNGYLSFLQKSDVIIFSWKLGLMVFGSPLLFYFSYLAFYSAIKNEVPKMNNKLANSLAVVAIFGAVVSFFSSTYISYDLNDQDYKTCPKNSWIAPNKYVKDISLCDEW
>NZ_QZDI01000041.1|WP_039278467.1|17917_18325_+|DUF1240-domain-containing-protein
MFKINRPLSFAFSVLTFILTCWGIWFSFNGYWNLFRLNDVIIFSWKVGILIFGAPILFYFSYLGFYMAVKNKPIGMHGILASVCGYLFFIGVVVSFVASMYISFNFREQGYEICPKNSWMDPNKYVKNIALCDEW

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Crispr_ID: NZ_QZDI01000041_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_QZDI01000041_2

14871-15920

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTGAAC	PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGNATAGGCAGCTTAGAAA	CRT

17 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_QZDI01000041_2

>merge|NZ_QZDI01000041|2|14871-15920|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTATAGGCAGCTTAGAAACTTGCCTGACGGGTTGCGGCACGCACTCGAAAGTTCACTGCCGTATAGGCAGCTTAGAAAGTCTGCTGCAAACAGACTGGCAAACATACCCGGTTCACTGCCGTATAGGCAGCTTAGAAAAGTCATAATACCCATGCGGAGCAGAGGAATTTGTTCACTGCCGTATAGGCAGCTTAGAAAAGCGCTCGTTCCATCTCATCAATCGCCGGGTCGTTCACTGCCGTATAGGCAGCTTAGAAAATGAGCATGACATACACCCGCAAATCGGCGAAGTTCACTGCCGTATAGGCAGCTTAGAAATGAGAAATACTTCACTGAGGTTGAAGGTATGGGTTCACTGCCGTATAGGCAGCTTAGAAAACGCATATAGTCTTTCTGCGTGAGTGGGAAAAGTTCACTGCCGTATAGGCAGCTTAGAAAGTGAAAAAGTCGGTTTTCGTCTGGCTGATACTGTTCACTGCCGTATAGGCAGCTTAGAAATACCTGAGGATTGTCAGTCCGAAATCCGGTATGTTCACTGCCGTATAGGCAGCTTAGAAAAGGAGCAGTGATACCAGTTATCAATGAAGGATGTTCACTGCCGTATAGGCAGCTTAGAAAAGCCTGGCCAGCATTCAACTTGAAAAAACGGATGTTCACTGCCGCATAGGCAGCTTAGAAATGGAATAAATACGTCGCCGATGCCAACTTTACGTTCACTGCCGCATAGGCAGCTTAGAAAACGCCAGGCAACTAGCGCAACTTCCACCTGATGTTCACTGCCGCATAGGCAGCTTAGAAAATGTTGAGGGCGTGCAACGCGTTGATTTGGAAGTTCACTGCCGCATAGGCAGCTTAGAAATCCTTTTCCTGATCCTTTCGTTCATCGCGTGAGTTCACTGCCGCATAGGCAGCTTAGAAAGATATGCCGATGATCCGATTTAAAACGATTAGTGTTCACTGCCGCATAGGCAGCTTAGAAAACAGGCTCTTTCGCCGCCCTGTCATAAGCCGCGTTCACTGCCGTACAGGCAGTTTATCCA

>NZ_QZDI01000041|2|2|14871-15860|PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	CTTGCCTGACGGGTTGCGGCACGCACTCGAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	GTCTGCTGCAAACAGACTGGCAAACATACCCG
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGTCATAATACCCATGCGGAGCAGAGGAATTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCGCTCGTTCCATCTCATCAATCGCCGGGTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATGAGCATGACATACACCCGCAAATCGGCGAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGAGAAATACTTCACTGAGGTTGAAGGTATGG
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACGCATATAGTCTTTCTGCGTGAGTGGGAAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	GTGAAAAAGTCGGTTTTCGTCTGGCTGATACT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TACCTGAGGATTGTCAGTCCGAAATCCGGTAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGGAGCAGTGATACCAGTTATCAATGAAGGAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCCTGGCCAGCATTCAACTTGAAAAAACGGAT
GTTCACTGCCGCATAGGCAGCTTAGAAA	TGGAATAAATACGTCGCCGATGCCAACTTTAC
GTTCACTGCCGCATAGGCAGCTTAGAAA	ACGCCAGGCAACTAGCGCAACTTCCACCTGAT
GTTCACTGCCGCATAGGCAGCTTAGAAA	ATGTTGAGGGCGTGCAACGCGTTGATTTGGAA
GTTCACTGCCGCATAGGCAGCTTAGAAA	TCCTTTTCCTGATCCTTTCGTTCATCGCGTGA
GTTCACTGCCGCATAGGCAGCTTAGAAA	GATATGCCGATGATCCGATTTAAAACGATTAGT
GTTCACTGCCGCATAGGCAGCTTAGAAA

>NZ_QZDI01000041|2|2|14871-15920|CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	CTTGCCTGACGGGTTGCGGCACGCACTCGAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	GTCTGCTGCAAACAGACTGGCAAACATACCCG
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGTCATAATACCCATGCGGAGCAGAGGAATTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCGCTCGTTCCATCTCATCAATCGCCGGGTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATGAGCATGACATACACCCGCAAATCGGCGAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGAGAAATACTTCACTGAGGTTGAAGGTATGG
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACGCATATAGTCTTTCTGCGTGAGTGGGAAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	GTGAAAAAGTCGGTTTTCGTCTGGCTGATACT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TACCTGAGGATTGTCAGTCCGAAATCCGGTAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGGAGCAGTGATACCAGTTATCAATGAAGGAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCCTGGCCAGCATTCAACTTGAAAAAACGGAT
GTTCACTGCCGCATAGGCAGCTTAGAAA	TGGAATAAATACGTCGCCGATGCCAACTTTAC
GTTCACTGCCGCATAGGCAGCTTAGAAA	ACGCCAGGCAACTAGCGCAACTTCCACCTGAT
GTTCACTGCCGCATAGGCAGCTTAGAAA	ATGTTGAGGGCGTGCAACGCGTTGATTTGGAA
GTTCACTGCCGCATAGGCAGCTTAGAAA	TCCTTTTCCTGATCCTTTCGTTCATCGCGTGA
GTTCACTGCCGCATAGGCAGCTTAGAAA	GATATGCCGATGATCCGATTTAAAACGATTAGT
GTTCACTGCCGCATAGGCAGCTTAGAAA	ACAGGCTCTTTCGCCGCCCTGTCATAAGCCGC
GTTCACTGCCGTACAGGCAGTTTATCCA

>NZ_QZDI01000041|2|2|14871-15920|CRT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CTTGCCTGACGGGTTGCGGCACGCACTCGAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	GTCTGCTGCAAACAGACTGGCAAACATACCCG
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGTCATAATACCCATGCGGAGCAGAGGAATTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCGCTCGTTCCATCTCATCAATCGCCGGGTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATGAGCATGACATACACCCGCAAATCGGCGAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGAGAAATACTTCACTGAGGTTGAAGGTATGG
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACGCATATAGTCTTTCTGCGTGAGTGGGAAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	GTGAAAAAGTCGGTTTTCGTCTGGCTGATACT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TACCTGAGGATTGTCAGTCCGAAATCCGGTAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGGAGCAGTGATACCAGTTATCAATGAAGGAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCCTGGCCAGCATTCAACTTGAAAAAACGGAT
GTTCACTGCCGCATAGGCAGCTTAGAAA	TGGAATAAATACGTCGCCGATGCCAACTTTAC
GTTCACTGCCGCATAGGCAGCTTAGAAA	ACGCCAGGCAACTAGCGCAACTTCCACCTGAT
GTTCACTGCCGCATAGGCAGCTTAGAAA	ATGTTGAGGGCGTGCAACGCGTTGATTTGGAA
GTTCACTGCCGCATAGGCAGCTTAGAAA	TCCTTTTCCTGATCCTTTCGTTCATCGCGTGA
GTTCACTGCCGCATAGGCAGCTTAGAAA	GATATGCCGATGATCCGATTTAAAACGATTAGT
GTTCACTGCCGCATAGGCAGCTTAGAAA	ACAGGCTCTTTCGCCGCCCTGTCATAAGCCGC
GTTCACTGCCGTACAGGCAGTTTATCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_QZDI01000041.1\|WP_039278469.1\|18978_19476_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|224368
NZ_QZDI01000041.1\|WP_039278475.1\|23077_23305_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226863
NZ_QZDI01000041.1\|WP_119872008.1\|10296_13599_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_QZDI01000041.1\|WP_119872005.1\|6616_7627_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_QZDI01000041.1\|WP_119872010.1\|17022_17433_+\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_QZDI01000041.1\|WP_119872012.1\|19559_20753_-\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_QZDI01000041.1\|WP_039283288.1\|1195_1738_-\|single-stranded-DNA-binding-protein-SSB1	unknown	unknown	gnl\|CDD\|236362
NZ_QZDI01000041.1\|WP_039278477.1\|23301_23718_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350229
NZ_QZDI01000041.1\|WP_119872007.1\|8569_9904_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_QZDI01000041.1\|WP_119872006.1\|7640_8573_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_QZDI01000041.1\|WP_094432328.1\|4837_5257_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|376651
NZ_QZDI01000041.1\|WP_014916572.1\|18374_18854_-\|Hcp-family-type-VI-secretion-system-effector	unknown	unknown	gnl\|CDD\|213799
NZ_QZDI01000041.1\|WP_119872013.1\|20816_21431_-\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_QZDI01000041.1\|WP_119872004.1\|1987_4822_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_QZDI01000041.1\|WP_039278467.1\|17917_18325_+\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_QZDI01000041.1\|WP_052902943.1\|6052_6607_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_QZDI01000041.1\|WP_119872009.1\|13595_14576_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_QZDI01000041.1\|WP_010295086.1\|21681_22161_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_QZDI01000041.1\|WP_119872011.1\|17464_17872_+\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_QZDI01000041.1\|WP_158586010.1\|9940_10102_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_QZDI01000041.1\|WP_039278469.1\|18978_19476_-\|M48-family-metallopeptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	1.93989e-29
NZ_QZDI01000041.1\|WP_119872008.1\|10296_13599_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_QZDI01000041.1\|WP_119872005.1\|6616_7627_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_QZDI01000041.1\|WP_119872010.1\|17022_17433_+\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	6.91772e-31
NZ_QZDI01000041.1\|WP_119872012.1\|19559_20753_-\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_QZDI01000041.1\|WP_039283288.1\|1195_1738_-\|single-stranded-DNA-binding-protein-SSB1	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	1.20048e-109
NZ_QZDI01000041.1\|WP_039278477.1\|23301_23718_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.28697e-47
NZ_QZDI01000041.1\|WP_119872007.1\|8569_9904_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	0
NZ_QZDI01000041.1\|WP_119872006.1\|7640_8573_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	9.30471e-156
NZ_QZDI01000041.1\|WP_094432328.1\|4837_5257_+\|YjbQ-family-protein	gnl\|CDD\|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	1.75771e-59
NZ_QZDI01000041.1\|WP_014916572.1\|18374_18854_-\|Hcp-family-type-VI-secretion-system-effector	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	7.94409e-79
NZ_QZDI01000041.1\|WP_119872013.1\|20816_21431_-\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	3.04058e-40
NZ_QZDI01000041.1\|WP_119872004.1\|1987_4822_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_QZDI01000041.1\|WP_039278467.1\|17917_18325_+\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	1.46931e-32
NZ_QZDI01000041.1\|WP_052902943.1\|6052_6607_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.4589e-98
NZ_QZDI01000041.1\|WP_119872009.1\|13595_14576_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_QZDI01000041.1\|WP_039278475.1\|23077_23305_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	6.04187e-10
NZ_QZDI01000041.1\|WP_119872011.1\|17464_17872_+\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	1.46761e-39
NZ_QZDI01000041.1\|WP_010295086.1\|21681_22161_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	3.9428e-34

>NZ_QZDI01000041.1|WP_119872009.1|13595_14576_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDNAFSPSDLKTILHSKRANVYYLQHCRILVNGGRVEYVTEEGNQSLYWNIPIANTSVVMLGTGTSVTQAAMREFARAGVMIGFCGGGGTPLFAANEAEVAVSWLSPQSEYRPTEYLQDWVSFWFDDEKRLAAAIAFQQVRIIQIRQHWLGSRLSRESRFTFKADHLQALLDRYEKGLTDCRTSNDVLVQEAMMTKALYKLAANAVSYGDFTRAKRGGGTDLANRFLDHGNYLAYGLAAVATWVLGLPHGLAVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMEGEDEQEFRQRCLTAFQQSEALDVMIGSLQDVASKLSQVGR
>NZ_QZDI01000041.1|WP_119872008.1|10296_13599_-|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISECNKRALVETRRILDQFAERKGERTWQTAITQEGLNTLRKLLRKTARRNTAVACHWVRSANHTELLWIVGNLRRFNAQGSVPTNTTSRDILRSKDENPWHSAEVFSLLAAIAGLFHDVGKANALFQTGLSGTGPRSQPYRHEWVSLRLFQAFVGEQDDKGWLTALSTVTPEAEIPLLAALQRDKQTPSSSPFRTLPPLAQVIAWLIVSHHRLPVFNKSAELAPNSSEPQLDYAETWLTDHLSAQWNALNHCKLDVTPANLAQVWQFPHGTPLRSSVWREKARKFADRALKLPSFMHFAQLDQRLTVHLARLALMLADHHYSAGAATVGWQDMAYSVWANTDRKTGEYKQRLDEHCVGVGQNALLLGRSLPNLRDTLPAITRHKGFRQRSTHPRFRWQDRAFDLACSIRESSRQHGFFGVNMASTGRGKTFANARIMYGLSDETLGCRFSVALGLRTLTLQTGDALRQRLKLDEDDLAVLIGSQAVQDLHEMQLENETRQQNTAQTGSESADPLFSEHQYVRYDGSLDDGRLKTWLERSPTLHQLLSAPVLITTIDHLMPATESLRGGHQIAPMLRLLTSDLVLDEPDDFGLEDLPALCRLVNWAGMLGSRVLLSSATLPPALIRALFGAYLDGRAAWQQAYGTPNTPLNVCCGWFDEFDCQHEQYGDVKGFITRHDAFVQQRLKHLTKEELPLRLASIVPVSSPSKNKDDVHLAVAQAIHPLLRDLHSQHHQQHKSGKTASLGLVRMANINPLVAVARQLLAIPSPPDTCIHYCIYHSQHPLAMRSYIEQRLDAALMRNDADALWQVDEIRQAIENAPQQHHIFVVLATSVAEVGRDHDYDWAIVEPSSMRSFIQLAGRILRHRQDEQHVPKMPNICLLSHNIRALKDEDVAYCKPGFESDDEQLTTHDLRQLLQEEDYRHLNAAPRIVQPAPLTKPFSLVALEHAVLGKTLLGLTNQKLDDLKRPPAAFWWRAHPHWNGELQRRTPFRKSDRDEPYTLWIADDDEDAVFMIPDDGPSKWKQSDVIRPTSLHMAEGVCAWIDPDYHALYQRLADEKQWELKRVSARFGEIRLREKEEKDWLWHPLLGVFGALN
>NZ_QZDI01000041.1|WP_158586010.1|9940_10102_-|hypothetical-protein
MKRVRTIWLAALLVAVLVVILCMKPMNMYINNQADSSAKGQQFSIFSLTINKI
>NZ_QZDI01000041.1|WP_119872007.1|8569_9904_-|type-I-F-CRISPR-associated-protein-Csy1
MGSEKLTEFILSYINNRKQAKLDAFDKEAEKKRAVLSGEALAAEELDLAEKRREIEQKHEVRAWLSDAASRAGQISLVTHALKFTHSDAKGTSVFSTGTVADAKTLSTATLAQPAIDAVGNAAALDVAKLLQTEHDGDSLVAALQRGDHRALEKLAENPEQLAQWLVGFQQVFTDRQPSSHKLAKQIYFPIANGEYHLLSPLYSSSLAQALHQRINAVRFGEEAKAIRQAQKANQWHEQLSISYPYLAVQNMGGTKPQNISSLNSSRSGRSYLLSSAPPQWNSIEKPPQQHDSIFRPRGEVDYHTRATLAQMQRFLLSVKEVENNRDIRQQRLRYLDQLIDQLFFYVASVQNLPSGWSAESELKRAQQLWLDPYRAETDTVFRREREAGDWQKAVAYDFGRWLNRRLKHEDLIFGEVERREWSTAALFKRRMREMESALKEDLA
>NZ_QZDI01000041.1|WP_119872006.1|7640_8573_-|type-I-F-CRISPR-associated-protein-Csy2
MSTLLILRRIKVENANAIAGLTYGFPAITHFLGFTHALSRKLQASHGLTLEGCGVVSHQHQLHAYGSSWERSFALTRNPLTKEAKTAAFNEEGRMHMTVSLLIRCEGQIPADTTALCDFLTQQAQCQRLAGGTIVDIERVTIQSLPSDEAETRKVMRRLLPGFVLKDRTSLLHDHFQTLQQDNPQAELVDAWLDFAALKMRAERDPNGSNVQWQYQPKPGGGGFLIPLMIGYRAISPLYAPGEVDKTRDPNTPFCFAEAAYGIGEWQGAHRISDIRQILWEYDYQNGDYHCRQLADTHSAAEDISYEFDD
>NZ_QZDI01000041.1|WP_119872005.1|6616_7627_-|type-I-F-CRISPR-associated-protein-Csy3
MAKASTSLKTASVLAFERKLANSDAVMYAGNWAQQDNWTPIAIQEKSVRGTISNRLKNALTSDPAKLDAEIQKANLQTVDVAALPFGADTLKVVFTLRVLGNLAQPSVCNDQDYQTALGNIITGYAQGQGFGTLAARYAENIANGRFLWRNRVGAEAIRVVVTTGEQRWEFNGEDYSLRAFSQPTGDLAALAQAIEQGLAGDTSVLFTVEAYVQLGNGQEVFPSQELVLDEKARNGKSKILYQVNDVAAIHSQKIGNALRTVDDWYPAADEAGPIAVEPYGSVTSRGKAYRQPKEKMDFYTLLDNWVIKGDVPAPEQQHYVIATLIRGGVFGEKGE
>NZ_QZDI01000041.1|WP_052902943.1|6052_6607_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYIDIRVQPDPEFTASQLLNALFAKLHRALGQVADGKIGISFPDVGKTLGECLRLHGTKEALSTLEQTAWLKGLRDYTQVSECKTVPDGVKFRTVRRVQLKSSAERLRRRSVNKGWLTEAEAAARIPDAVEKRSALPFVQIKSLSNGQMFFVFVEHGPLQDAPIAGRFSSYGLSAEATVPWF
>NZ_QZDI01000041.1|WP_094432328.1|4837_5257_+|YjbQ-family-protein
MWMQYEIRLKPKARGFHLVTDEILAQVTGLRQINVGLMQVFIKHTSAALTINENADPTVRQDFESFFNRLVPEDEPYYRHTYEGSDDMPAHLKGSLLGNSLTLPITNGRLNIGTWQGIYLCEHRNHGGNRSLVVTLHGE
>NZ_QZDI01000041.1|WP_119872004.1|1987_4822_+|excinuclease-ABC-subunit-UvrA
MDKIEVRGARTHNLKNINLIIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPEHDVPLDAQTVSQMVDNVLAQPEGKRLMLLAPIVKDRKGEHSKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALDLSGGSVVVADMDDPTQPELLFSANFACPVCGYSMHELEPRMFSFNNPAGACPSCDGLGVQQFFDPSRVVQNAELSLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDVDAPFESLSAAVQKVILYGSGKENVEFKYINDRGDTSVRRHPFEGVLHNMERRYKETESTAVREELAKFISNRSCASCGGTRLREEARNVFVEQTTLPQISDMSIGHAMTFFQNMKLSGQRAQIAEKVLKEIGDRLKFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQIVAEGTMEEIMAVPDSLTGQFLSGKRKIEIPQQRVPADPTKVLKLIGAKGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPLAQRQLNGATLAEPAAHREIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPEARTRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIQYKGKGIHEVLDMTIEEARGFFDAIPALARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKLSRELSKRGTGQTLYILDEPTTGLHFADIQQLLTVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEQSHTARFLWPILAREA
>NZ_QZDI01000041.1|WP_039283288.1|1195_1738_-|single-stranded-DNA-binding-protein-SSB1
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQNSAPAQSNEPPMDFDDDIPF
>NZ_QZDI01000041.1|WP_119872010.1|17022_17433_+|DUF1240-domain-containing-protein
MVKINRPFFFIYSVFIFLLSCWGGWFSLSGYIDFFNLNDVISFSWKLGVIIFLVPIVFQFSYFGFFSAVKNRPIKMNNKISNALVIFAIFGTVVSLFSSMYISYSLNEQGYKICPKNSWIAPNKYVRNIALCKEQM
>NZ_QZDI01000041.1|WP_119872011.1|17464_17872_+|DUF1240-domain-containing-protein
MVKVNRPLVGAFAVFLFFISCFISWISFNGYLSFLQKSDVIIFSWKLGLMVFGSPLLFYFSYLAFYSAIKNEVPKMNNKLANSLAVVAIFGAVVSFFSSTYISYDLNDQDYKTCPKNSWIAPNKYVKDISLCDEW
>NZ_QZDI01000041.1|WP_039278467.1|17917_18325_+|DUF1240-domain-containing-protein
MFKINRPLSFAFSVLTFILTCWGIWFSFNGYWNLFRLNDVIIFSWKVGILIFGAPILFYFSYLGFYMAVKNKPIGMHGILASVCGYLFFIGVVVSFVASMYISFNFREQGYEICPKNSWMDPNKYVKNIALCDEW
>NZ_QZDI01000041.1|WP_014916572.1|18374_18854_-|Hcp-family-type-VI-secretion-system-effector
MANLIYASINGQKQGLISSGCSTLDSIGNRYQTGHEDQIQVLGLNHSISREQNVAHHPIHFIKPIDKSSPLLGMAISYNEKVDVTFYFYRVNSAGQLELYYEVTLTDASIVDVTCVYPHVIDNNDIMPYEKVQLKYKTIAWNHKIAGTSGYSIWEEMSL
>NZ_QZDI01000041.1|WP_039278469.1|18978_19476_-|M48-family-metallopeptidase
MTQLRYLNGYPPAIVAQVQTLLDQGKLGLWLEKRYPDRHPIQSDKSLYQFVAELKQRYLKNAPAISKVLYDNKQNPIKGTLGTNTFVARVQGGKLKSNNEIRIATLFRDGPEDFLRMIVVHELAHLKEKDHNKAFYQLCCHMDPDYHQLEFDMRIWLNWREINAG
>NZ_QZDI01000041.1|WP_119872012.1|19559_20753_-|aspartate/tyrosine/aromatic-aminotransferase
MFQNVDTYAGDPILSLMEKFKQDPRADKINLSIGLYYNEQNIIPQLRSVSAAESSLKQPAQSASSYLPMEGLQPYRTAIQQLLFGENHAALEAGRIATIQTLGGSGALKVGADFLKRYFPNSEVWVSDPTWENHIAIFEGAGFNVHTYPYFDGENLGVKFDAMLATLQALPARSIVLLHPCCHNPTGSDLTTEQWDRVIEVIIQRELIPFMDIAYQGFGLGIEQDAYAIRAVARAGVPALIANSFSKIFSLYSERVGGLSVVCDDADSAQRVLGQLKATVRRNYSSPPNFGAQVVSKVLNDAQLNADWKAEVEEMRTRILSMRQELVSALKNALPNRNFDYLLTQRGMFSYTGFSPEQVDRLREEFGVYLIASGRMCMAGLNHSNVQRVAAAFAAIQ
>NZ_QZDI01000041.1|WP_119872013.1|20816_21431_-|YitT-family-protein
MDNVIPTQKLSHTLLEDILAILIGTLMVSFGVILLRQAGALTGGTAGIAFLIHYLTNVSFGVAFFLLNLPFYYLALRRMGWEFTVKTFCAVGLVSLFSDLHPMFVHFDQLNPFYATLFGNIITGIGFVVLFRHKASLGGMNILALYLQDKYGLRAGKLQMGVDVVIVLTSLFVVSIPMLVASILGATILNLIIAMNHRPGRYAA
>NZ_QZDI01000041.1|WP_010295086.1|21681_22161_-|Lrp/AsnC-family-transcriptional-regulator
MYHIDDFDLKILTLLQTNGRLTNQELSDLVGLSASQCSRRRIALEQAQLILGYHARLSPNAVGLECLGLIEVRLINHTSEYVERFHQMLGEVDAIIDAYKTTGDADYLLKVAVADLPGLSTLISQILSQNKSVAHLKTSVVLNRLKENGLMMPELPALP
>NZ_QZDI01000041.1|WP_039278475.1|23077_23305_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MRIVSVFKNGNNRAIRLPRDMDFEGVNELEIVREGDTIMLRPVKPNWHSFLQEDRADADFMTERQDVVEEGRFKL
>NZ_QZDI01000041.1|WP_039278477.1|23301_23718_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MSRLFMLDTNICSFIMREHPAEVIEKLQQCTLRRDRIVVSAITYAEMRFGAVGKKASPRHMQLVDAFCRRLDAVLPWDSAAVDATTKIKIELAAAGTPIGPNDTAIAGHAISAKAILVTNNLREFERVPGLTLEDWVK

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Crispr_ID: NZ_QZDI01000041_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_QZDI01000041_3

22264-22772

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRT
TTTCTAAGCTGCCTATACGGCAGTGAAC	PILER-CR

8 spacers

cas1,cas3f

The CRISPR arrays of NZ_QZDI01000041_3

>merge|NZ_QZDI01000041|3|22264-22772|CRISPRCasFinder,CRT,PILER-CR
TTTCTTAACTGCCTGTACGGCAGTGAACTCATTCCGCGAATATGTAGACATTAATATCGATTTTCTAAGCTGCCTATGCGGCAGTGAACAGACTATCTGTTTTGTCGCCATTACTAGTTCATTTCTAAGCTGTCTATACGGCAGTGAACACGGATTTCATTAGCAGGGAAATATGGTGAACTTTCTAAGCTGCCTATACGGCAGTGAACGAATACGACGCAGCGTTTCAAGGGCGCGGTAGTTTCTAAGCTGCCTATACGGCAGTGAACATTTTGTTTACGAAATCCGATCCCAGTATTACTTTCTAAGCTGCCTATACGGCAGTGAACCCAGTGCTGCGCAATCAACGCGCACAGCGTGTTTTCTAAGCTGCCTATACGGCAGTGAACGCAGCGCCGACGGGCGTGTGGCGGATGTGTCGTTTCTAAGCTGCCTATACGGCAGTGAACCGGTATGGTCCGCTCAAAACATGGCGGCACCATTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_QZDI01000041|3|3|22264-22772|CRISPRCasFinder
TTTCTTAACTGCCTGTACGGCAGTGAAC	TCATTCCGCGAATATGTAGACATTAATATCGAT
TTTCTAAGCTGCCTATGCGGCAGTGAAC	AGACTATCTGTTTTGTCGCCATTACTAGTTCA
TTTCTAAGCTGTCTATACGGCAGTGAAC	ACGGATTTCATTAGCAGGGAAATATGGTGAAC
TTTCTAAGCTGCCTATACGGCAGTGAAC	GAATACGACGCAGCGTTTCAAGGGCGCGGTAG
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATTTTGTTTACGAAATCCGATCCCAGTATTAC
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCAGTGCTGCGCAATCAACGCGCACAGCGTGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GCAGCGCCGACGGGCGTGTGGCGGATGTGTCG
TTTCTAAGCTGCCTATACGGCAGTGAAC	CGGTATGGTCCGCTCAAAACATGGCGGCACCA
TTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_QZDI01000041|3|3|22264-22772|CRT
TTTCTTAACTGCCTGTACGGCAGTGAAC	TCATTCCGCGAATATGTAGACATTAATATCGAT
TTTCTAAGCTGCCTATGCGGCAGTGAAC	AGACTATCTGTTTTGTCGCCATTACTAGTTCA
TTTCTAAGCTGTCTATACGGCAGTGAAC	ACGGATTTCATTAGCAGGGAAATATGGTGAAC
TTTCTAAGCTGCCTATACGGCAGTGAAC	GAATACGACGCAGCGTTTCAAGGGCGCGGTAG
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATTTTGTTTACGAAATCCGATCCCAGTATTAC
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCAGTGCTGCGCAATCAACGCGCACAGCGTGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GCAGCGCCGACGGGCGTGTGGCGGATGTGTCG
TTTCTAAGCTGCCTATACGGCAGTGAAC	CGGTATGGTCCGCTCAAAACATGGCGGCACCA
TTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_QZDI01000041|3|3|22325-22772|PILER-CR
TTTCTAAGCTGCCTATGCGGCAGTGAAC	AGACTATCTGTTTTGTCGCCATTACTAGTTCA
TTTCTAAGCTGTCTATACGGCAGTGAAC	ACGGATTTCATTAGCAGGGAAATATGGTGAAC
TTTCTAAGCTGCCTATACGGCAGTGAAC	GAATACGACGCAGCGTTTCAAGGGCGCGGTAG
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATTTTGTTTACGAAATCCGATCCCAGTATTAC
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCAGTGCTGCGCAATCAACGCGCACAGCGTGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GCAGCGCCGACGGGCGTGTGGCGGATGTGTCG
TTTCTAAGCTGCCTATACGGCAGTGAAC	CGGTATGGTCCGCTCAAAACATGGCGGCACCA
TTTCTAAGCTGCCTATACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_QZDI01000041.1\|WP_119872016.1\|30826_31849_-\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|236991
NZ_QZDI01000041.1\|WP_039278469.1\|18978_19476_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|224368
NZ_QZDI01000041.1\|WP_119872010.1\|17022_17433_+\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_QZDI01000041.1\|WP_119872012.1\|19559_20753_-\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_QZDI01000041.1\|WP_039278467.1\|17917_18325_+\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_QZDI01000041.1\|WP_039278477.1\|23301_23718_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350229
NZ_QZDI01000041.1\|WP_119872008.1\|10296_13599_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_QZDI01000041.1\|WP_119872014.1\|24487_25570_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_QZDI01000041.1\|WP_014916572.1\|18374_18854_-\|Hcp-family-type-VI-secretion-system-effector	unknown	unknown	gnl\|CDD\|213799
NZ_QZDI01000041.1\|WP_127110964.1\|30064_30340_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QZDI01000041.1\|WP_039517591.1\|23856_24495_-\|hypothetical-protein	unknown	unknown	unknown
NZ_QZDI01000041.1\|WP_119872013.1\|20816_21431_-\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_QZDI01000041.1\|WP_010279223.1\|25611_27018_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181193
NZ_QZDI01000041.1\|WP_040033638.1\|27146_28133_+\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|182701
NZ_QZDI01000041.1\|WP_014916565.1\|28514_29903_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|365848
NZ_QZDI01000041.1\|WP_119872011.1\|17464_17872_+\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_QZDI01000041.1\|WP_119872009.1\|13595_14576_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_QZDI01000041.1\|WP_010295086.1\|21681_22161_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_QZDI01000041.1\|WP_119872015.1\|30388_30661_-\|envelope-stress-response-protein-PspG	unknown	unknown	gnl\|CDD\|181875
NZ_QZDI01000041.1\|WP_039278475.1\|23077_23305_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226863

Protein	Function_ID	Function_description	E-value
NZ_QZDI01000041.1\|WP_039278469.1\|18978_19476_-\|M48-family-metallopeptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	1.93989e-29
NZ_QZDI01000041.1\|WP_119872010.1\|17022_17433_+\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	6.91772e-31
NZ_QZDI01000041.1\|WP_119872012.1\|19559_20753_-\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_QZDI01000041.1\|WP_039278467.1\|17917_18325_+\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	1.46931e-32
NZ_QZDI01000041.1\|WP_039278477.1\|23301_23718_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.28697e-47
NZ_QZDI01000041.1\|WP_119872008.1\|10296_13599_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_QZDI01000041.1\|WP_119872014.1\|24487_25570_-\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_QZDI01000041.1\|WP_014916572.1\|18374_18854_-\|Hcp-family-type-VI-secretion-system-effector	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	7.94409e-79
NZ_QZDI01000041.1\|WP_119872016.1\|30826_31849_-\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0
NZ_QZDI01000041.1\|WP_119872013.1\|20816_21431_-\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	3.04058e-40
NZ_QZDI01000041.1\|WP_010279223.1\|25611_27018_-\|replicative-DNA-helicase	gnl\|CDD\|181193	PRK08006, PRK08006, replicative DNA helicase DnaB.	0
NZ_QZDI01000041.1\|WP_040033638.1\|27146_28133_+\|quinone-oxidoreductase	gnl\|CDD\|182701	PRK10754, PRK10754, NADPH:quinone reductase.	0
NZ_QZDI01000041.1\|WP_014916565.1\|28514_29903_+\|cytochrome-P450	gnl\|CDD\|365848	pfam00067, p450, Cytochrome P450. Cytochrome P450s are haem-thiolate proteins involved in the oxidative degradation of various compounds. They are particularly well known for their role in the degradation of environmental toxins and mutagens. They can be divided into 4 classes, according to the method by which electrons from NAD(P)H are delivered to the catalytic site. Sequence conservation is relatively low within the family - there are only 3 absolutely conserved residues - but their general topography and structural fold are highly conserved. The conserved core is composed of a coil termed the 'meander', a four-helix bundle, helices J and K, and two sets of beta-sheets. These constitute the haem-binding loop (with an absolutely conserved cysteine that serves as the 5th ligand for the haem iron), the proton-transfer groove and the absolutely conserved EXXR motif in helix K. While prokaryotic P450s are soluble proteins, most eukaryotic P450s are associated with microsomal membranes. their general enzymatic function is to catalyze regiospecific and stereospecific oxidation of non-activated hydrocarbons at physiological temperatures.	6.68359e-63
NZ_QZDI01000041.1\|WP_119872011.1\|17464_17872_+\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	1.46761e-39
NZ_QZDI01000041.1\|WP_119872009.1\|13595_14576_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_QZDI01000041.1\|WP_010295086.1\|21681_22161_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	3.9428e-34
NZ_QZDI01000041.1\|WP_119872015.1\|30388_30661_-\|envelope-stress-response-protein-PspG	gnl\|CDD\|181875	PRK09459, pspG, envelope stress response protein PspG.	1.53661e-25
NZ_QZDI01000041.1\|WP_039278475.1\|23077_23305_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	6.04187e-10

>NZ_QZDI01000041.1|WP_010295086.1|21681_22161_-|Lrp/AsnC-family-transcriptional-regulator
MYHIDDFDLKILTLLQTNGRLTNQELSDLVGLSASQCSRRRIALEQAQLILGYHARLSPNAVGLECLGLIEVRLINHTSEYVERFHQMLGEVDAIIDAYKTTGDADYLLKVAVADLPGLSTLISQILSQNKSVAHLKTSVVLNRLKENGLMMPELPALP
>NZ_QZDI01000041.1|WP_119872013.1|20816_21431_-|YitT-family-protein
MDNVIPTQKLSHTLLEDILAILIGTLMVSFGVILLRQAGALTGGTAGIAFLIHYLTNVSFGVAFFLLNLPFYYLALRRMGWEFTVKTFCAVGLVSLFSDLHPMFVHFDQLNPFYATLFGNIITGIGFVVLFRHKASLGGMNILALYLQDKYGLRAGKLQMGVDVVIVLTSLFVVSIPMLVASILGATILNLIIAMNHRPGRYAA
>NZ_QZDI01000041.1|WP_119872012.1|19559_20753_-|aspartate/tyrosine/aromatic-aminotransferase
MFQNVDTYAGDPILSLMEKFKQDPRADKINLSIGLYYNEQNIIPQLRSVSAAESSLKQPAQSASSYLPMEGLQPYRTAIQQLLFGENHAALEAGRIATIQTLGGSGALKVGADFLKRYFPNSEVWVSDPTWENHIAIFEGAGFNVHTYPYFDGENLGVKFDAMLATLQALPARSIVLLHPCCHNPTGSDLTTEQWDRVIEVIIQRELIPFMDIAYQGFGLGIEQDAYAIRAVARAGVPALIANSFSKIFSLYSERVGGLSVVCDDADSAQRVLGQLKATVRRNYSSPPNFGAQVVSKVLNDAQLNADWKAEVEEMRTRILSMRQELVSALKNALPNRNFDYLLTQRGMFSYTGFSPEQVDRLREEFGVYLIASGRMCMAGLNHSNVQRVAAAFAAIQ
>NZ_QZDI01000041.1|WP_039278469.1|18978_19476_-|M48-family-metallopeptidase
MTQLRYLNGYPPAIVAQVQTLLDQGKLGLWLEKRYPDRHPIQSDKSLYQFVAELKQRYLKNAPAISKVLYDNKQNPIKGTLGTNTFVARVQGGKLKSNNEIRIATLFRDGPEDFLRMIVVHELAHLKEKDHNKAFYQLCCHMDPDYHQLEFDMRIWLNWREINAG
>NZ_QZDI01000041.1|WP_014916572.1|18374_18854_-|Hcp-family-type-VI-secretion-system-effector
MANLIYASINGQKQGLISSGCSTLDSIGNRYQTGHEDQIQVLGLNHSISREQNVAHHPIHFIKPIDKSSPLLGMAISYNEKVDVTFYFYRVNSAGQLELYYEVTLTDASIVDVTCVYPHVIDNNDIMPYEKVQLKYKTIAWNHKIAGTSGYSIWEEMSL
>NZ_QZDI01000041.1|WP_039278467.1|17917_18325_+|DUF1240-domain-containing-protein
MFKINRPLSFAFSVLTFILTCWGIWFSFNGYWNLFRLNDVIIFSWKVGILIFGAPILFYFSYLGFYMAVKNKPIGMHGILASVCGYLFFIGVVVSFVASMYISFNFREQGYEICPKNSWMDPNKYVKNIALCDEW
>NZ_QZDI01000041.1|WP_119872011.1|17464_17872_+|DUF1240-domain-containing-protein
MVKVNRPLVGAFAVFLFFISCFISWISFNGYLSFLQKSDVIIFSWKLGLMVFGSPLLFYFSYLAFYSAIKNEVPKMNNKLANSLAVVAIFGAVVSFFSSTYISYDLNDQDYKTCPKNSWIAPNKYVKDISLCDEW
>NZ_QZDI01000041.1|WP_119872010.1|17022_17433_+|DUF1240-domain-containing-protein
MVKINRPFFFIYSVFIFLLSCWGGWFSLSGYIDFFNLNDVISFSWKLGVIIFLVPIVFQFSYFGFFSAVKNRPIKMNNKISNALVIFAIFGTVVSLFSSMYISYSLNEQGYKICPKNSWIAPNKYVRNIALCKEQM
>NZ_QZDI01000041.1|WP_119872009.1|13595_14576_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDNAFSPSDLKTILHSKRANVYYLQHCRILVNGGRVEYVTEEGNQSLYWNIPIANTSVVMLGTGTSVTQAAMREFARAGVMIGFCGGGGTPLFAANEAEVAVSWLSPQSEYRPTEYLQDWVSFWFDDEKRLAAAIAFQQVRIIQIRQHWLGSRLSRESRFTFKADHLQALLDRYEKGLTDCRTSNDVLVQEAMMTKALYKLAANAVSYGDFTRAKRGGGTDLANRFLDHGNYLAYGLAAVATWVLGLPHGLAVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMEGEDEQEFRQRCLTAFQQSEALDVMIGSLQDVASKLSQVGR
>NZ_QZDI01000041.1|WP_119872008.1|10296_13599_-|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISECNKRALVETRRILDQFAERKGERTWQTAITQEGLNTLRKLLRKTARRNTAVACHWVRSANHTELLWIVGNLRRFNAQGSVPTNTTSRDILRSKDENPWHSAEVFSLLAAIAGLFHDVGKANALFQTGLSGTGPRSQPYRHEWVSLRLFQAFVGEQDDKGWLTALSTVTPEAEIPLLAALQRDKQTPSSSPFRTLPPLAQVIAWLIVSHHRLPVFNKSAELAPNSSEPQLDYAETWLTDHLSAQWNALNHCKLDVTPANLAQVWQFPHGTPLRSSVWREKARKFADRALKLPSFMHFAQLDQRLTVHLARLALMLADHHYSAGAATVGWQDMAYSVWANTDRKTGEYKQRLDEHCVGVGQNALLLGRSLPNLRDTLPAITRHKGFRQRSTHPRFRWQDRAFDLACSIRESSRQHGFFGVNMASTGRGKTFANARIMYGLSDETLGCRFSVALGLRTLTLQTGDALRQRLKLDEDDLAVLIGSQAVQDLHEMQLENETRQQNTAQTGSESADPLFSEHQYVRYDGSLDDGRLKTWLERSPTLHQLLSAPVLITTIDHLMPATESLRGGHQIAPMLRLLTSDLVLDEPDDFGLEDLPALCRLVNWAGMLGSRVLLSSATLPPALIRALFGAYLDGRAAWQQAYGTPNTPLNVCCGWFDEFDCQHEQYGDVKGFITRHDAFVQQRLKHLTKEELPLRLASIVPVSSPSKNKDDVHLAVAQAIHPLLRDLHSQHHQQHKSGKTASLGLVRMANINPLVAVARQLLAIPSPPDTCIHYCIYHSQHPLAMRSYIEQRLDAALMRNDADALWQVDEIRQAIENAPQQHHIFVVLATSVAEVGRDHDYDWAIVEPSSMRSFIQLAGRILRHRQDEQHVPKMPNICLLSHNIRALKDEDVAYCKPGFESDDEQLTTHDLRQLLQEEDYRHLNAAPRIVQPAPLTKPFSLVALEHAVLGKTLLGLTNQKLDDLKRPPAAFWWRAHPHWNGELQRRTPFRKSDRDEPYTLWIADDDEDAVFMIPDDGPSKWKQSDVIRPTSLHMAEGVCAWIDPDYHALYQRLADEKQWELKRVSARFGEIRLREKEEKDWLWHPLLGVFGALN
>NZ_QZDI01000041.1|WP_039278475.1|23077_23305_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MRIVSVFKNGNNRAIRLPRDMDFEGVNELEIVREGDTIMLRPVKPNWHSFLQEDRADADFMTERQDVVEEGRFKL
>NZ_QZDI01000041.1|WP_039278477.1|23301_23718_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MSRLFMLDTNICSFIMREHPAEVIEKLQQCTLRRDRIVVSAITYAEMRFGAVGKKASPRHMQLVDAFCRRLDAVLPWDSAAVDATTKIKIELAAAGTPIGPNDTAIAGHAISAKAILVTNNLREFERVPGLTLEDWVK
>NZ_QZDI01000041.1|WP_039517591.1|23856_24495_-|hypothetical-protein
MSKNGPAGFYRQAHGLPTLKRVIYYAASWLAVSAILTLFALVNFYTLKPTDVGGTLFGGMFSAMFDLIYWSCAASGFCFLALFRLSGWRVAWILAGLVQIGISALWRIQYWQEYENDNLILSPMPGELYVSMLVGAGMAAIGIVKYRHARRSPVAQRPTYAKAVAALLLVALYLALPLHLYLREPLPYCAFSPDGQQLSICLGDNDERIIVE
>NZ_QZDI01000041.1|WP_119872014.1|24487_25570_-|alanine-racemase
MKTATAVINRRALRHNLQRIRQLAPDSQVVAIVKANAYGHGMIDAAHTFSDADCYGVARLSEALALRAAGITKPIVLLEGFFSADELPLLVEHQLETAVHSPEQLAALEQATLPQPIPVWMKLDSGMHRLGVLPEHADAFWQRLTECRNVVQPVNIMSHFCRADEPEAGTTERQLTCFDAFTQGKPGAQSIAASGGILLWPQSHRDRVRPGIILYGVSPLDNEDAAHFGFQPAMTFTSHLIAVREHHAGEAVGYGGTWTSPRNTRLGVVAVGYGDGYPRCAPAGTPVLINGREVPLSGRVSMDMITVDLGPDAQDKVGDEVILWGPTLPVERIAAHTGASAYELITRLTQRTALEYVDGE
>NZ_QZDI01000041.1|WP_010279223.1|25611_27018_-|replicative-DNA-helicase
MAEKRPTNKSNEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVAERVVANDFYNRAHRLIFTEMQRLLEMSKPIDLITLSESLELQGSLESAGGFAYLAELAKNTPSAANIGAYADIVRERAVVREMISVANEIADAGYDPQGRSSEDLLDLAESRVFQIAENRASKDEGPKSIDRILEDTVSRIEQLYQRPHDGVTGVSTGYQDLDKKTAGLQKSDLIIVAARPSMGKTTFAMNLCENAAMMQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISSTMGILLEKRNMYIDDSSGLTPTEVRSRARRVFREHDGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIILGKQRNGPIGSVRLTFNGQWSRFDNYAGPQYDDE
>NZ_QZDI01000041.1|WP_040033638.1|27146_28133_+|quinone-oxidoreductase
MAKRVQFRAYGGPEVLQYVDFTPADPAAGEVQVENRAIGINFIDTYIRSGLYPVPDLPSGLGTEAAGVVTKVGAGVSELKVGDRVVYAQSGLGGYSDVHNVVAEKVALLPDAISFEQAAASFLKGLTVYYLLRQTYEIKPNEVFLFHAAAGGVGLIACQWAKALGAKLIGTVGSDEKAERAKQAGAWATINYRTENIAQRVAELTDGQKVNVVYDSVGKDTWEASLDSLRRRGLMVSFGNASGPVTGVNLGILNQKGSLYVTRPSLFGYVTNRAELEQASNELFSLIASGAITVDVPQNQKFALSDAQAAHRALESRSTQGSCLLIPG
>NZ_QZDI01000041.1|WP_014916565.1|28514_29903_+|cytochrome-P450
MRSIKRLPMPPTRSILGHVDYLKRSDVHLQMLRWKAQYGRFYRLRLGLTSAIVIADAECIRTIMKSRPDEFRRISSIESVFQEAGLNGVFSSEGKRWEHQRRLTEPMFQPAHLKYFYPSLRKVTSRLSDRFAMLAETGETVVLVEEFKRYTVDITSLLAFGEDVNTLEQGENPLSQSLRRLFPMINARSGSLFPVWRYIRRERDKQFDASLSLIREYVDGFIYRQRKRLRLNPQLMEAPENMLQVMLAEQKKDGTLKDDDIVANAITLLLAGEDTTANTLAWMSFQLCSAPSVEECVFQECKEAADGAGALLPWPLPRLPWLTAVMYESMRLKPVAPLLYLEPTKNTVIDDFLIKKGTPLLLMLNASGFDDALFQQPDDFVPERWLERGKASFSDLQPFGGGPRMCPGRSLALMEIKLGFHALCSGFRVEAQQPASDVTESFAFTMSPSGFRVKLHKREPLQ
>NZ_QZDI01000041.1|WP_127110964.1|30064_30340_+|hypothetical-protein
MVIVTKVPLCGYYFPDDDEIVWLFATVFYLPNLVCSPSKRQSGVKLWRHPSSHIREKISAGAHFCTKTGHIKTRRIKTSRIKTSRSKTSWC
>NZ_QZDI01000041.1|WP_119872015.1|30388_30661_-|envelope-stress-response-protein-PspG
MLEIFFVIGFFIMLMLTGVSLLGVIAALFVASLFMLIGGLFSIAIKVLPWLILAVAAVWLWRKFSGRPVYNSHSYTYRKYTYRQRNGNEW
>NZ_QZDI01000041.1|WP_119872016.1|30826_31849_-|tRNA-dihydrouridine(20/20a)-synthase-DusA
MTDVKSGTHHTVSTDSRASRLNRFSIAPMLDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGDYLAYSEEEHPLALQLGGSDPQALAQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGEAALVADCIKAMKDSTSIPITVKTRIGIDDQDSYEFLCDFIQTVAERGECETFIVHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPALTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELFGIDTATPDLAGVVRAMYPYIERELSGGASLGHITRHMLGMFQGIPGARQWRRYLSENAHKPGADAAVVERALALINLV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_QZDI01000041_3	3.7\|22653\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22653-22684	32	NZ_CP035512	Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence	229085-229116	6	0.812
NZ_QZDI01000041_3	3.7\|22653\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22653-22684	32	NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	272886-272917	6	0.812
NZ_QZDI01000041_3	3.6\|22593\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22593-22624	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	3334-3365	7	0.781
NZ_QZDI01000041_3	3.6\|22593\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22593-22624	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	215953-215984	7	0.781
NZ_QZDI01000041_3	3.6\|22593\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22593-22624	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	254584-254615	7	0.781
NZ_QZDI01000041_3	3.6\|22593\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22593-22624	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	300901-300932	7	0.781
NZ_QZDI01000041_3	3.6\|22593\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22593-22624	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	380579-380610	7	0.781
NZ_QZDI01000041_3	3.6\|22593\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22593-22624	32	MT011984	Comamonas testosteroni strain NFYY023 plasmid pNFYY023-1, complete sequence	77174-77205	7	0.781
NZ_QZDI01000041_1	1.15\|5617\|30\|NZ_QZDI01000041\|CRT	5617-5646	30	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	215919-215948	8	0.733
NZ_QZDI01000041_2	2.6\|15199\|32\|NZ_QZDI01000041\|PILER-CR,CRISPRCasFinder,CRT	15199-15230	32	NZ_CP049914	Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence	129010-129041	8	0.75
NZ_QZDI01000041_2	2.6\|15199\|32\|NZ_QZDI01000041\|PILER-CR,CRISPRCasFinder,CRT	15199-15230	32	MT104465	Pseudomonas phage MR1, complete genome	31831-31862	8	0.75
NZ_QZDI01000041_2	2.8\|15319\|32\|NZ_QZDI01000041\|PILER-CR,CRISPRCasFinder,CRT	15319-15350	32	NZ_CP042265	Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence	43817-43848	8	0.75
NZ_QZDI01000041_3	3.7\|22653\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22653-22684	32	NZ_CP019257	Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence	13235-13266	8	0.75
NZ_QZDI01000041_3	3.7\|22653\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22653-22684	32	NZ_CP019274	Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence	2268-2299	8	0.75
NZ_QZDI01000041_3	3.7\|22653\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22653-22684	32	NZ_CP019275	Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence	20374-20405	8	0.75
NZ_QZDI01000041_3	3.7\|22653\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22653-22684	32	NZ_CP019279	Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence	12624-12655	8	0.75
NZ_QZDI01000041_3	3.7\|22653\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22653-22684	32	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	16926-16957	8	0.75
NZ_QZDI01000041_3	3.7\|22653\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22653-22684	32	NC_049342	Escherichia phage 500465-1, complete genome	17590-17621	8	0.75
NZ_QZDI01000041_3	3.7\|22653\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22653-22684	32	KY271398	Klebsiella phage 4 LV-2017, complete genome	23100-23131	8	0.75
NZ_QZDI01000041_3	3.7\|22653\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22653-22684	32	CP025900	Escherichia phage sp., complete genome	17590-17621	8	0.75
NZ_QZDI01000041_3	3.8\|22713\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22713-22744	32	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	651004-651035	8	0.75
NZ_QZDI01000041_1	1.1\|5325\|32\|NZ_QZDI01000041\|CRISPRCasFinder	5325-5356	32	MK937601	Gordonia phage Charming, complete genome	1379-1410	9	0.719
NZ_QZDI01000041_1	1.1\|5325\|32\|NZ_QZDI01000041\|CRISPRCasFinder	5325-5356	32	MH976519	Gordonia phage Tangent, complete genome	1379-1410	9	0.719
NZ_QZDI01000041_1	1.1\|5325\|32\|NZ_QZDI01000041\|CRISPRCasFinder	5325-5356	32	MH976510	Gordonia phage Fosterous, complete genome	1379-1410	9	0.719
NZ_QZDI01000041_1	1.1\|5325\|32\|NZ_QZDI01000041\|CRISPRCasFinder	5325-5356	32	MH479924	Gordonia phage Rofo, complete genome	1379-1410	9	0.719
NZ_QZDI01000041_1	1.1\|5325\|32\|NZ_QZDI01000041\|CRISPRCasFinder	5325-5356	32	MH976514	Gordonia phage Nordenberg, complete genome	1379-1410	9	0.719
NZ_QZDI01000041_1	1.1\|5325\|32\|NZ_QZDI01000041\|CRISPRCasFinder	5325-5356	32	NC_031239	Gordonia phage Vivi2, complete genome	1379-1410	9	0.719
NZ_QZDI01000041_1	1.8\|5745\|32\|NZ_QZDI01000041\|CRISPRCasFinder,PILER-CR	5745-5776	32	NZ_CP047096	Bacillus marisflavi strain 151-25 plasmid p25, complete sequence	20202-20233	9	0.719
NZ_QZDI01000041_2	2.1\|14899\|32\|NZ_QZDI01000041\|PILER-CR,CRISPRCasFinder,CRT	14899-14930	32	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	264774-264805	9	0.719
NZ_QZDI01000041_2	2.1\|14899\|32\|NZ_QZDI01000041\|PILER-CR,CRISPRCasFinder,CRT	14899-14930	32	NZ_CP017944	Phyllobacterium zundukense strain Tri-48 plasmid unnamed4, complete sequence	264591-264622	9	0.719
NZ_QZDI01000041_2	2.6\|15199\|32\|NZ_QZDI01000041\|PILER-CR,CRISPRCasFinder,CRT	15199-15230	32	KU064779	Pseudomonas phage PPPL-1, complete genome	33988-34019	9	0.719
NZ_QZDI01000041_2	2.11\|15499\|33\|NZ_QZDI01000041\|PILER-CR,CRISPRCasFinder,CRT	15499-15531	33	MH717709	Escherichia phage LL2, complete genome	11181-11213	9	0.727
NZ_QZDI01000041_3	3.4\|22473\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22473-22504	32	NZ_CP049911	Diaphorobacter sp. HDW4A plasmid p_unnamed1, complete sequence	240045-240076	9	0.719
NZ_QZDI01000041_3	3.4\|22473\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22473-22504	32	NZ_CP020927	Sphingobium yanoikuyae strain SHJ plasmid pSES189, complete sequence	23596-23627	9	0.719
NZ_QZDI01000041_3	3.4\|22473\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22473-22504	32	NC_008043	Ruegeria sp. TM1040 megaplasmid, complete sequence	151059-151090	9	0.719
NZ_QZDI01000041_3	3.4\|22473\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22473-22504	32	NZ_CP046256	Sphingobium sp. CAP-1 plasmid p3, complete sequence	25803-25834	9	0.719
NZ_QZDI01000041_3	3.4\|22473\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22473-22504	32	NZ_CP053227	Sphingobium sp. RSMS plasmid pRSMS4	8278-8309	9	0.719
NZ_QZDI01000041_3	3.4\|22473\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22473-22504	32	NZ_CP023072	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence	209206-209237	9	0.719
NZ_QZDI01000041_3	3.4\|22473\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22473-22504	32	NZ_CP022748	Sphingobium hydrophobicum strain C1 plasmid p2, complete sequence	241613-241644	9	0.719
NZ_QZDI01000041_3	3.4\|22473\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22473-22504	32	NC_009507	Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence	21204-21235	9	0.719
NZ_QZDI01000041_3	3.4\|22473\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22473-22504	32	MN855885	Siphoviridae sp. isolate 38, complete genome	1544-1575	9	0.719
NZ_QZDI01000041_3	3.7\|22653\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22653-22684	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	410680-410711	9	0.719
NZ_QZDI01000041_3	3.7\|22653\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22653-22684	32	NZ_AP014580	Burkholderia sp. RPE67 plasmid p2, complete sequence	263322-263353	9	0.719
NZ_QZDI01000041_3	3.7\|22653\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22653-22684	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	1691645-1691676	9	0.719
NZ_QZDI01000041_1	1.2\|5385\|32\|NZ_QZDI01000041\|CRISPRCasFinder	5385-5416	32	MK448349	Streptococcus satellite phage Javan176, complete genome	1781-1812	10	0.688
NZ_QZDI01000041_1	1.7\|5685\|32\|NZ_QZDI01000041\|CRISPRCasFinder,PILER-CR	5685-5716	32	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	640384-640415	10	0.688
NZ_QZDI01000041_1	1.10\|5865\|32\|NZ_QZDI01000041\|CRISPRCasFinder,PILER-CR	5865-5896	32	NZ_CP019037	Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence	379715-379746	10	0.688
NZ_QZDI01000041_2	2.6\|15199\|32\|NZ_QZDI01000041\|PILER-CR,CRISPRCasFinder,CRT	15199-15230	32	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	143577-143608	10	0.688
NZ_QZDI01000041_2	2.6\|15199\|32\|NZ_QZDI01000041\|PILER-CR,CRISPRCasFinder,CRT	15199-15230	32	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	327867-327898	10	0.688
NZ_QZDI01000041_2	2.6\|15199\|32\|NZ_QZDI01000041\|PILER-CR,CRISPRCasFinder,CRT	15199-15230	32	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	1432941-1432972	10	0.688
NZ_QZDI01000041_3	3.2\|22353\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22353-22384	32	NZ_CP025802	Yersinia ruckeri strain SC09 plasmid pLT, complete sequence	11979-12010	10	0.688
NZ_QZDI01000041_3	3.7\|22653\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22653-22684	32	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	116424-116455	10	0.688
NZ_QZDI01000041_2	2.2\|14959\|32\|NZ_QZDI01000041\|PILER-CR,CRISPRCasFinder,CRT	14959-14990	32	NZ_CP045721	Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence	39719-39750	11	0.656
NZ_QZDI01000041_2	2.2\|14959\|32\|NZ_QZDI01000041\|PILER-CR,CRISPRCasFinder,CRT	14959-14990	32	NZ_CP022517	Pantoea vagans strain FBS135 plasmid pPant1, complete sequence	364142-364173	11	0.656
NZ_QZDI01000041_2	2.12\|15560\|32\|NZ_QZDI01000041\|PILER-CR,CRISPRCasFinder,CRT	15560-15591	32	NZ_CP053711	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence	74002-74033	11	0.656
NZ_QZDI01000041_3	3.7\|22653\|32\|NZ_QZDI01000041\|CRISPRCasFinder,CRT,PILER-CR	22653-22684	32	NC_012855	Ralstonia pickettii 12D plasmid pRp12D01, complete sequence	106164-106195	11	0.656

1. spacer 3.7|22653|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035512 (Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence) position: , mismatch: 6, identity: 0.812

gcagcgccgacgggcgtgtggcggatgtgtcg	CRISPR spacer
tcagcgccgacaggcgggtggcggatagttcg	Protospacer
 **********.**** *********.  ***

2. spacer 3.7|22653|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 6, identity: 0.812

gcagcgccgacgggcgtgtggcggatg-tgtcg	CRISPR spacer
ccaacgccgacgggcttgtggcggtcgctgtc-	Protospacer
 **.*********** ******** .* ****

3. spacer 3.6|22593|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ccagtgctgcgcaatcaacgcgcacagcgtgt	CRISPR spacer
ccgcaactgcgcagtcaacgcgcccagcgtga	Protospacer
**.  .*******.********* *******

4. spacer 3.6|22593|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ccagtgctgcgcaatcaacgcgcacagcgtgt	CRISPR spacer
ccgcaactgcgcagtcaacgcgcccagcgtga	Protospacer
**.  .*******.********* *******

5. spacer 3.6|22593|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ccagtgctgcgcaatcaacgcgcacagcgtgt	CRISPR spacer
ccgcaactgcgcagtcaacgcgcccagcgtga	Protospacer
**.  .*******.********* *******

6. spacer 3.6|22593|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ccagtgctgcgcaatcaacgcgcacagcgtgt	CRISPR spacer
ccgcaactgcgcagtcaacgcgcccagcgtga	Protospacer
**.  .*******.********* *******

7. spacer 3.6|22593|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ccagtgctgcgcaatcaacgcgcacagcgtgt	CRISPR spacer
ccgcaactgcgcagtcaacgcgcccagcgtga	Protospacer
**.  .*******.********* *******

8. spacer 3.6|22593|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to MT011984 (Comamonas testosteroni strain NFYY023 plasmid pNFYY023-1, complete sequence) position: , mismatch: 7, identity: 0.781

ccagtgctgcgcaatcaacgcgcacagcgtgt	CRISPR spacer
ccgcaactgcgcagtcaacgcgcccagcgtga	Protospacer
**.  .*******.********* *******

9. spacer 1.15|5617|30|NZ_QZDI01000041|CRT matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 8, identity: 0.733

cagtgaactttttccagatggtacagacgt	CRISPR spacer
gggtgagctttttcaagatggtacacgccg	Protospacer
 .****.******* ********** .*

10. spacer 2.6|15199|32|NZ_QZDI01000041|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049914 (Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tgagaaatacttcactgaggttgaaggtatgg	CRISPR spacer
cgtgaaatacttcactgagcttgaagcaaaaa	Protospacer
.* **************** ******  * ..

11. spacer 2.6|15199|32|NZ_QZDI01000041|PILER-CR,CRISPRCasFinder,CRT matches to MT104465 (Pseudomonas phage MR1, complete genome) position: , mismatch: 8, identity: 0.75

tgagaaatacttcactgaggttgaaggtatgg	CRISPR spacer
cgctcagaacttcactgaggttgccggtatgg	Protospacer
.*   *. ***************  *******

12. spacer 2.8|15319|32|NZ_QZDI01000041|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042265 (Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

gtgaaaaagtcggttttcgtctggctgatact	CRISPR spacer
gtgaaaaagtgggtttgcgtctgaacggtgcg	Protospacer
********** ***** ******. .*.*.*

13. spacer 3.7|22653|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcagcgccgacgggcgtgtggcggatgtgtcg	CRISPR spacer
gaagcgccgacggtcgggtggcggatgccagt	Protospacer
* *********** ** **********.

14. spacer 3.7|22653|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcagcgccgacgggcgtgtggcggatgtgtcg	CRISPR spacer
gaagcgccgacggtcgggtggcggatgccagt	Protospacer
* *********** ** **********.

15. spacer 3.7|22653|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 8, identity: 0.75

gcagcgccgacgggcgtgtggcggatgtgtcg	CRISPR spacer
gaagcgccgacggtcgggtggcggatgccagt	Protospacer
* *********** ** **********.

16. spacer 3.7|22653|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 8, identity: 0.75

gcagcgccgacgggcgtgtggcggatgtgtcg	CRISPR spacer
gaagcgccgacggtcgggtggcggatgccagt	Protospacer
* *********** ** **********.

17. spacer 3.7|22653|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcagcgccgacgggcgtgtggcggatgtgtcg	CRISPR spacer
gaagcgccgacggtcgggtggcggatgccagt	Protospacer
* *********** ** **********.

18. spacer 3.7|22653|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 8, identity: 0.75

gcagcgccgacgggcgtgtggcggatgtgtcg	CRISPR spacer
gaagcgccgacggtcgggtggcggatgccagt	Protospacer
* *********** ** **********.

19. spacer 3.7|22653|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 8, identity: 0.75

gcagcgccgacgggcgtgtggcggatgtgtcg	CRISPR spacer
gaagcgccgacggtcgggtggcggatgccagt	Protospacer
* *********** ** **********.

20. spacer 3.7|22653|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 8, identity: 0.75

gcagcgccgacgggcgtgtggcggatgtgtcg	CRISPR spacer
gaagcgccgacggtcgggtggcggatgccagt	Protospacer
* *********** ** **********.

21. spacer 3.8|22713|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

cggtatggtccgctcaaaacatggcggcacca	CRISPR spacer
gccgatggtccgcgcaaaacagggcggccgca	Protospacer
    ********* ******* ******  **

22. spacer 1.1|5325|32|NZ_QZDI01000041|CRISPRCasFinder matches to MK937601 (Gordonia phage Charming, complete genome) position: , mismatch: 9, identity: 0.719

ctctttatcttccagtcgcacccacgcgccct	CRISPR spacer
ccttagtgattccagtcgcacccatacgccct	Protospacer
*..*     ***************..******

23. spacer 1.1|5325|32|NZ_QZDI01000041|CRISPRCasFinder matches to MH976519 (Gordonia phage Tangent, complete genome) position: , mismatch: 9, identity: 0.719

ctctttatcttccagtcgcacccacgcgccct	CRISPR spacer
ccttagtgattccagtcgcacccatacgccct	Protospacer
*..*     ***************..******

24. spacer 1.1|5325|32|NZ_QZDI01000041|CRISPRCasFinder matches to MH976510 (Gordonia phage Fosterous, complete genome) position: , mismatch: 9, identity: 0.719

ctctttatcttccagtcgcacccacgcgccct	CRISPR spacer
ccttagtgattccagtcgcacccatacgccct	Protospacer
*..*     ***************..******

25. spacer 1.1|5325|32|NZ_QZDI01000041|CRISPRCasFinder matches to MH479924 (Gordonia phage Rofo, complete genome) position: , mismatch: 9, identity: 0.719

ctctttatcttccagtcgcacccacgcgccct	CRISPR spacer
ccttagtgattccagtcgcacccatacgccct	Protospacer
*..*     ***************..******

26. spacer 1.1|5325|32|NZ_QZDI01000041|CRISPRCasFinder matches to MH976514 (Gordonia phage Nordenberg, complete genome) position: , mismatch: 9, identity: 0.719

ctctttatcttccagtcgcacccacgcgccct	CRISPR spacer
ccttagtgattccagtcgcacccatacgccct	Protospacer
*..*     ***************..******

27. spacer 1.1|5325|32|NZ_QZDI01000041|CRISPRCasFinder matches to NC_031239 (Gordonia phage Vivi2, complete genome) position: , mismatch: 9, identity: 0.719

ctctttatcttccagtcgcacccacgcgccct	CRISPR spacer
ccttagtgattccagtcgcacccatacgccct	Protospacer
*..*     ***************..******

28. spacer 1.8|5745|32|NZ_QZDI01000041|CRISPRCasFinder,PILER-CR matches to NZ_CP047096 (Bacillus marisflavi strain 151-25 plasmid p25, complete sequence) position: , mismatch: 9, identity: 0.719

gttatggtttatgttggtgacatttcgcggcg	CRISPR spacer
tatatgttttatattggtgacattttcagtgg	Protospacer
  **** *****.************.  *  *

29. spacer 2.1|14899|32|NZ_QZDI01000041|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 9, identity: 0.719

cttgcctgacgggttgcggcacgcactcgaaa	CRISPR spacer
ggatcatgacaggctgcggcacgcactcgacg	Protospacer
    * ****.**.**************** .

30. spacer 2.1|14899|32|NZ_QZDI01000041|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017944 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

cttgcctgacgggttgcggcacgcactcgaaa	CRISPR spacer
catcggcgacgggttgcgcgacgcactcgacc	Protospacer
* *   .***********  **********

31. spacer 2.6|15199|32|NZ_QZDI01000041|PILER-CR,CRISPRCasFinder,CRT matches to KU064779 (Pseudomonas phage PPPL-1, complete genome) position: , mismatch: 9, identity: 0.719

tgagaaatacttcactgaggttgaaggtatgg	CRISPR spacer
cgctcagaacttcactgaggttgccggtatga	Protospacer
.*   *. ***************  ******.

32. spacer 2.11|15499|33|NZ_QZDI01000041|PILER-CR,CRISPRCasFinder,CRT matches to MH717709 (Escherichia phage LL2, complete genome) position: , mismatch: 9, identity: 0.727

agcctggccagcattcaacttgaaaaaacggat	CRISPR spacer
agcctgcccatcattcaacttgaagcgctggtg	Protospacer
****** *** *************. . .**

33. spacer 3.4|22473|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049911 (Diaphorobacter sp. HDW4A plasmid p_unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gaatacgacgcagcgtttcaagggcgcggtag	CRISPR spacer
gaatacgacgcaacgtttaaaggggttctttt	Protospacer
************.***** *****  .  *

34. spacer 3.4|22473|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020927 (Sphingobium yanoikuyae strain SHJ plasmid pSES189, complete sequence) position: , mismatch: 9, identity: 0.719

gaatacgacgcagcgtttcaagggcgcggtag	CRISPR spacer
cgacaggacgctgcggttcaagggcgcggact	Protospacer
 .*.* ***** *** *************

35. spacer 3.4|22473|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

gaatacgacgcagcgtttcaagggcgcggtag	CRISPR spacer
ggttttatcgcaccgtttcaaggacgcggtaa	Protospacer
*. * .. **** **********.*******.

36. spacer 3.4|22473|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046256 (Sphingobium sp. CAP-1 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.719

gaatacgacgcagcgtttcaagggcgcggtag	CRISPR spacer
cgacaggacgctgcggttcaagggcgcggact	Protospacer
 .*.* ***** *** *************

37. spacer 3.4|22473|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053227 (Sphingobium sp. RSMS plasmid pRSMS4) position: , mismatch: 9, identity: 0.719

gaatacgacgcagcgtttcaagggcgcggtag	CRISPR spacer
cgacaggacgctgcggttcaagggcgcggact	Protospacer
 .*.* ***** *** *************

38. spacer 3.4|22473|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023072 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence) position: , mismatch: 9, identity: 0.719

gaatacgacgcagcgtttcaagggcgcggtag	CRISPR spacer
ggcgatcccgcagcgtttcagggccgcggtaa	Protospacer
*.  *.  ************.** *******.

39. spacer 3.4|22473|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022748 (Sphingobium hydrophobicum strain C1 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

gaatacgacgcagcgtttcaagggcgcggtag	CRISPR spacer
cgacaggacgctgcggttcaagggcgcggact	Protospacer
 .*.* ***** *** *************

40. spacer 3.4|22473|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NC_009507 (Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence) position: , mismatch: 9, identity: 0.719

gaatacgacgcagcgtttcaagggcgcggtag	CRISPR spacer
cgacaggacgctgcggttcaagggcgcggact	Protospacer
 .*.* ***** *** *************

41. spacer 3.4|22473|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to MN855885 (Siphoviridae sp. isolate 38, complete genome) position: , mismatch: 9, identity: 0.719

gaatacgacgcagcgtttcaagggcgcggtag	CRISPR spacer
gaatacgacgtagagtttcaaggctgatattt	Protospacer
**********.** ********* .*  .*

42. spacer 3.7|22653|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gcagcgccgacgggcgtgtggcggatgtgtcg	CRISPR spacer
aatgcgccgacggccgtgcggcggatctctgc	Protospacer
.  ********** ****.******* * *

43. spacer 3.7|22653|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014580 (Burkholderia sp. RPE67 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

gcagcgccgacgggcgtgtggcggatgtgtcg	CRISPR spacer
ccagcgccgtctggcgtgtggcggccgtcgat	Protospacer
 ******** * ************ .**

44. spacer 3.7|22653|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.719

gcagcgccgacgggcgtgtggcggatgtgtcg	CRISPR spacer
ccagcgccgtctggcgtgtggcggccgtcgat	Protospacer
 ******** * ************ .**

45. spacer 1.2|5385|32|NZ_QZDI01000041|CRISPRCasFinder matches to MK448349 (Streptococcus satellite phage Javan176, complete genome) position: , mismatch: 10, identity: 0.688

gtctggagcatcaaacaaagtggcaccccacg	CRISPR spacer
aactggaacatcaaaaaaagtggcaatatatt	Protospacer
. *****.******* ********* . .*.

46. spacer 1.7|5685|32|NZ_QZDI01000041|CRISPRCasFinder,PILER-CR matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 10, identity: 0.688

ggtgatggccgacatcgcagcaattttccatt	CRISPR spacer
ggtgatggccaacatcgccgcaagctggatca	Protospacer
**********.******* **** .*    .

47. spacer 1.10|5865|32|NZ_QZDI01000041|CRISPRCasFinder,PILER-CR matches to NZ_CP019037 (Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

gctctggcgtcctttataggctttcagcgccg	CRISPR spacer
cgcttggcgtccttgatgggctttcagcaatc	Protospacer
  ..********** **.**********. .

48. spacer 2.6|15199|32|NZ_QZDI01000041|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 10, identity: 0.688

tgagaaatacttcactgaggttgaaggtatgg	CRISPR spacer
agtgaaatacttcacagagcttgaagcagaaa	Protospacer
 * ************ *** ******  . ..

49. spacer 2.6|15199|32|NZ_QZDI01000041|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 10, identity: 0.688

tgagaaatacttcactgaggttgaaggtatgg	CRISPR spacer
agtgaaatacttcacagagcttgaagcagaaa	Protospacer
 * ************ *** ******  . ..

50. spacer 2.6|15199|32|NZ_QZDI01000041|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgagaaatacttcactgaggttgaaggtatgg	CRISPR spacer
agtgaaatacttcacagagcttgaagcagaaa	Protospacer
 * ************ *** ******  . ..

51. spacer 3.2|22353|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025802 (Yersinia ruckeri strain SC09 plasmid pLT, complete sequence) position: , mismatch: 10, identity: 0.688

agactatctgttttgtcgccattactagttca	CRISPR spacer
tagcgtgctgttttgtcgccataaatagtttc	Protospacer
 ..*   *************** * *****.

52. spacer 3.7|22653|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

gcagcgccgacgggcgtgtggcggatgtgtcg	CRISPR spacer
aatgcgccgacggccgtgcggcggatctccgc	Protospacer
.  ********** ****.******* * .

53. spacer 2.2|14959|32|NZ_QZDI01000041|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045721 (Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

gtctgctgcaaacagactggcaaacatacccg	CRISPR spacer
ccatgctgcaatcagaccggcaaacagcgtaa	Protospacer
 . ******** *****.********   . .

54. spacer 2.2|14959|32|NZ_QZDI01000041|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022517 (Pantoea vagans strain FBS135 plasmid pPant1, complete sequence) position: , mismatch: 11, identity: 0.656

gtctgctgcaaacagactggcaaacatacccg	CRISPR spacer
ccatgctgcaatcagaccggcaaacagcgtaa	Protospacer
 . ******** *****.********   . .

55. spacer 2.12|15560|32|NZ_QZDI01000041|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053711 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence) position: , mismatch: 11, identity: 0.656

tggaataaatacgtcgccgatgccaactttac	CRISPR spacer
aacgatgaacacgtcgccgatgccaaccaggt	Protospacer
 . .**.**.*****************.  ..

56. spacer 3.7|22653|32|NZ_QZDI01000041|CRISPRCasFinder,CRT,PILER-CR matches to NC_012855 (Ralstonia pickettii 12D plasmid pRp12D01, complete sequence) position: , mismatch: 11, identity: 0.656

gcagcgccgacgggcgtgtggcggatgtgtcg	CRISPR spacer
agcacgccgatgggcgtgtggtggatgccatc	Protospacer
.  .******.**********.*****.  .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_QZDI01000010

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

23632 : 31667

Dickeya_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010277576.1\|23632_24757_+	polysaccharide lyase	A0A140XB77	Dickeya_phage	1.7e-54	71.7
WP_039277271.1\|25425_26553_+	polysaccharide lyase	A0A140XB77	Dickeya_phage	2.0e-55	70.3
WP_014916842.1\|27262_28387_+	polysaccharide lyase	A0A140XB77	Dickeya_phage	1.9e-58	76.1
WP_039498080.1\|28563_29841_+	pectate lyase	A0A1B1IPS8	uncultured_Mediterranean_phage	2.9e-34	33.1
WP_010277593.1\|30074_30647_-	peptidylprolyl isomerase A	A0A076FI46	Aureococcus_anophage	3.8e-10	35.0
WP_010277597.1\|30857_31667_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-29	38.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_QZDI01000003

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_QZDI01000003_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_QZDI01000003_1

93015-93117

Orphan

Consensus_repeat	Method
CGTGGGCAGGGATAGCCCACGATAAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_QZDI01000003_1

>merge|NZ_QZDI01000003|1|93015-93117|CRISPRCasFinder
CGTGGGCAGGGATAGCCCACGATAAAAAAGTGCAGGAGCAATTTTCAACAACGCGTAGCGTTGGCCCGAAGGGGCGTGGGCAGGGATAGCCCACGATAAAAAA

>NZ_QZDI01000003|1|1|93015-93117|CRISPRCasFinder
CGTGGGCAGGGATAGCCCACGATAAAAAA	GTGCAGGAGCAATTTTCAACAACGCGTAGCGTTGGCCCGAAGGGG
CGTGGGCAGGGATAGCCCACGATAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_QZDI01000003.1\|WP_039274275.1\|107464_107839_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QZDI01000003.1\|WP_119870614.1\|96274_98236_-\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NZ_QZDI01000003.1\|WP_119870606.1\|71029_71881_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_QZDI01000003.1\|WP_010295748.1\|95837_96149_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_QZDI01000003.1\|WP_039282081.1\|71880_72432_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227296
NZ_QZDI01000003.1\|WP_104213439.1\|87445_88801_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_QZDI01000003.1\|WP_119870611.1\|88803_90933_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|379183
NZ_QZDI01000003.1\|WP_119870607.1\|72424_73075_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227296
NZ_QZDI01000003.1\|WP_119870610.1\|84903_86694_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_QZDI01000003.1\|WP_119870616.1\|102811_103336_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171561
NZ_QZDI01000003.1\|WP_119870609.1\|74947_84649_+\|beta-propeller-fold-lactonase-family-protein	unknown	unknown	gnl\|CDD\|378416
NZ_QZDI01000003.1\|WP_010282300.1\|99137_99530_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QZDI01000003.1\|WP_039274271.1\|104450_105461_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_QZDI01000003.1\|WP_119870615.1\|100254_102648_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|237595
NZ_QZDI01000003.1\|WP_119870617.1\|103332_104280_+\|DUF4880-domain-containing-protein	unknown	unknown	gnl\|CDD\|236622
NZ_QZDI01000003.1\|WP_119870612.1\|91277_92975_+\|rhamnogalacturonate-lyase	unknown	unknown	gnl\|CDD\|199907
NZ_QZDI01000003.1\|WP_119870618.1\|105554_107081_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225121
NZ_QZDI01000003.1\|WP_119870608.1\|73270_74890_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379164
NZ_QZDI01000003.1\|WP_010282272.1\|86693_87449_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_QZDI01000003.1\|WP_010295745.1\|94182_95841_-\|cation/acetate-symporter-ActP	unknown	unknown	gnl\|CDD\|236495

Protein	Function_ID	Function_description	E-value
NZ_QZDI01000003.1\|WP_119870614.1\|96274_98236_-\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NZ_QZDI01000003.1\|WP_119870606.1\|71029_71881_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.3887e-12
NZ_QZDI01000003.1\|WP_010295748.1\|95837_96149_-\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	1.3789e-44
NZ_QZDI01000003.1\|WP_039282081.1\|71880_72432_+\|hypothetical-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	0.00673746
NZ_QZDI01000003.1\|WP_104213439.1\|87445_88801_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	7.57593e-18
NZ_QZDI01000003.1\|WP_119870611.1\|88803_90933_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|379183	pfam13437, HlyD_3, HlyD family secretion protein. This is a family of largely bacterial haemolysin translocator HlyD proteins.	9.24122e-19
NZ_QZDI01000003.1\|WP_119870607.1\|72424_73075_+\|hypothetical-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	0.00200313
NZ_QZDI01000003.1\|WP_119870610.1\|84903_86694_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	5.44638e-12
NZ_QZDI01000003.1\|WP_119870616.1\|102811_103336_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171561	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional.	6.85345e-54
NZ_QZDI01000003.1\|WP_119870609.1\|74947_84649_+\|beta-propeller-fold-lactonase-family-protein	gnl\|CDD\|378416	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyze 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.	7.4298e-23
NZ_QZDI01000003.1\|WP_039274271.1\|104450_105461_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	2.36988e-12
NZ_QZDI01000003.1\|WP_119870615.1\|100254_102648_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|237595	PRK14050, PRK14050, TonB-dependent siderophore receptor.	3.40306e-141
NZ_QZDI01000003.1\|WP_119870617.1\|103332_104280_+\|DUF4880-domain-containing-protein	gnl\|CDD\|236622	PRK09774, PRK09774, fec operon regulator FecR; Reviewed.	3.38082e-56
NZ_QZDI01000003.1\|WP_119870612.1\|91277_92975_+\|rhamnogalacturonate-lyase	gnl\|CDD\|199907	cd10320, RGL4_N, N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11.	8.37862e-86
NZ_QZDI01000003.1\|WP_119870618.1\|105554_107081_-\|MFS-transporter	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	3.25787e-116
NZ_QZDI01000003.1\|WP_119870608.1\|73270_74890_+\|hypothetical-protein	gnl\|CDD\|379164	pfam13400, Tad, Putative Flp pilus-assembly TadE/G-like. This is an N-terminal domain on a family of putative Flp pilus-assembly proteins. The exact function is not known. The Flp-pilus biogenesis genes include the Tad genes, and some members of this family are putatively assigned as being TadG.	6.3042e-05
NZ_QZDI01000003.1\|WP_010282272.1\|86693_87449_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.74584e-29
NZ_QZDI01000003.1\|WP_010295745.1\|94182_95841_-\|cation/acetate-symporter-ActP	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0

>NZ_QZDI01000003.1|WP_119870612.1|91277_92975_+|rhamnogalacturonate-lyase
MLAPYSYSAQDNAVSLSVSGLNTVLDNGLLKVAFGDDGSAVSMVTGGKNIVTNLSGAVRDPSKTRSAYLDYYINDAHAKGVKDFVPERVEVLRNDRDMVHVAYIDDRDGLLRLEYHLIMRRGVSGLYSYVVAENSGNQDVKVSELRNVYRFDPARLDHLYNGDRQGKPLLYSQLEASPKVQDETWRLPDGSIYSKYDFAGYMRAAPFWGVFGNGVGAWLIHGNREYFSGDALKQDLLVHQDAIILNYMTGSHFGTPDMVAPPGWKKFYGPWLLYINQGDTGHMLADAQRQALTETVSWPYKWVNDSRYARERTQVSGRVASQQPVTVVLSSSLDEPFDVQTRGYSYQATTDAQGNFALSHVRPGNYHLAVYANSGTQPGILAEQTLSVSGDKQVLPVIALPKAEPVVWAIGQANRQASEFRFGNEARNTRWQHEVPANLTFDIGRSDYQRDWYYAQTKPGKWDIRFALQPEKKTYFLNIALAAASNSGMSEPTMPQLAVAVNGTTLETLTYANDKTIYRGALQSGRYHIARIPVSSRFLKNGDNTITLQLKGGSVMYDVVTLSEE
>NZ_QZDI01000003.1|WP_119870611.1|88803_90933_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MAGGATPAAGLSPLRDELILHAGPANRDGSPSWTLEDPLRGLYFRIGWAEMAMLSRWSMGNAAQIVADVNQTSALMLDDSDVQYFNRFLQANSLTRVSGDEALAQFSRQVEQSRVSIWRKLLKNYLFFRIPLWHPDRFLGATLPWVEPFFSRTFLKLTLLVAVLGLFLAGRQWETFKHTFLHFFTLEGAALAGLTLCFTKILHEFGHAYTCKRFGARVATMGVAFLVMMPVLYTDTSGSWKLTRRRQRMAIGAAGMMTELVLAAWATLAWSFLPDGMLRSAAFMLATTTWIMTLAINLSPLMRFDGYFLLSDGLQMPNLQNRGFAIGRWQMREWLFGLGDAPPEHFPCWLQRTLVGYAFAVWIYRFFLFTGIAILVYHMTFKLLGMLLFAIEIGYFVVMPVVNEVREWSKRRKDYRMNRNMTTTLVVSAVVLLLLMIPWQRGVYAPALLRTEQQSSLYMPVPAMIQRIDVKIGEPVQAGQTLFMLSSDALEHEQKQLERQIATLSWQSTFQVFNKEAAGDHQRVKQEHEAALQKLQVLQRQSEQLTVRAPIDGVVADMITPLETGEWLGQGEWLAVVTKPTGGLVEAFVSEKDWQRLRTGAKGTFYLQDVSRSSLPLTIVEIASTATRDLNAAPELASSYGGDIATLSDSQRKLHPEQAVYRVLLSLPDDYRAQPQVLRGTVVMDGEAQSLLIRGWKVVSAVLIRELSF
>NZ_QZDI01000003.1|WP_104213439.1|87445_88801_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MTERNTTVAQTEQDTRLALLAELLQLQSRARARETLDELAFFIVNETHNVVKYRQALLWDCDKRRLQAASGLASLDHNAPFCTEFSRLCSQWQEEGRQTQTLQCRELPADDQILWQEHLPEFLLWLPLRLPQGDTPLVLVLARDSAWLPAEIVLLEKLADAYAHAWSSLCKVRRRPSKTPPARRRLIVAAIVALVLILLIPVRQSVLAPAEIVAHRPVMVRAPVAGVVDDILVRPNQTVSANQPLVRLDVRELENRLESARQAFATADAQYRQAQQQALFDANSKASLAVLQSRREQAQSEMDFLQRQQERMQLASPRDGVAIFDDSSDWIGRSVAVGERIMMIADPHDVELEIQLPAADAIALENGADVRLFLNVAPNSAQEARLEQIGYRAAPTPDNVMAYRLRARFTQDDPQLRVGLKGTAKLYGKRTVLFVYLLRKPLASLRVWLGV
>NZ_QZDI01000003.1|WP_010282272.1|86693_87449_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MAFGMMRPLLLVSALGLPLLGQAATTGDIRVQLSAQRYTVLSSEIAGKVTDIAVKEGEHFKQGDTLVTFDCTVLREKLNYSNAAENAARKKLAIADRLDKLNSISLSDVDQARSSVSMAQAESGVNRAMLQRCVIKAPFSGRVTETKVKRWESVPEGKELLAIYDDSAFELEMIVPSRWLVWLKQGSAFQVVLDETGLSYPAEISRLSSAIDPVSQSVKVFGRITQSTAGLLPGMSGVAQIVPPDAGSVSP
>NZ_QZDI01000003.1|WP_119870610.1|84903_86694_+|TolC-family-protein
MNQHIAHFWDSQQHDSQQQNVQHEATPRTAGSRALRIAVTLACLGLAGCAVKPEPVTIEQQVAQALSDRTQMFANQEPVRGTITLDEAIARALKYNLQQRVALLEQAMEDDLLGVQNLDMLLPKLTARAGLQTRDNVAGSSSENIATGQPSLVPSTSQDQTQRTADLTMSWNVLDFGISYFNAKVQANKSLAAEERRRRVVADITRQVRTAYWEAATAQRLQPEVTTALTQARQALEYARQTEQQRLLAPVEALRFQKNMLEMVRQLEIVDSDLVVAKSRLAALMNLPPSSKYDVVVPSESSLVAPKMAYSLDDLENFSMVKRPEVREESYLARNSVLETRKSLLRLLPGVSLFAGINGDSNSYLVNHQWANAGVQVSGNLLNVLSWSSVKRAGQANEDLAEVRRQALRMAVLTQVNVAWQEYQQSTQMFGRYQELARIQRGILNQTTLSVQHRAETQMEQVRVSTETILTTRARDRSFADVQNALGAVYQAAGLDVLPDNVSDVSLAALSSSIARTTGNLEKGGVTVPRLSLATPATPATTTASTKTASTPSSAPVSKPIASSVATSSASAGKPYRVVNTDMWDNLQSLQAGGSR
>NZ_QZDI01000003.1|WP_119870609.1|74947_84649_+|beta-propeller-fold-lactonase-family-protein
MTFSRSKSGSGLTRTPRQAWVLEPRMMFDAAAVATVADVAAQVVVATDTAPGVDATPTKATVTITDTSDSFPAVDLFSDVSVSAGKDGQELKDLVITVNRTGANQALVIDGTEITLESGNGAKTTVGAGQYSYTVAVSGATTTVTVSIASSEAFEPTDVAKLIDGIAYKPLDNTVAGGDVVVTLKSLSDEGGDDTDTADLNIHATVTIDSKINVAPVVSASDAPELAELIIVPGMESPQDVRYSSTGDYAYSIGSDGTLGVFTVGEHGKLTLSQTLSGISALKDVKEVVLSADNRSLYAVSGNSNIVALSLDSNGQVVRLSGSAEQPEYTRTIAAQNGNITGLAVSGDGTQVYIATQWNGMVIFTRDATTGDLTFLQRVNDSGIDRSGIVASSGNYVVTIGMGAKHTLSIFQRGEDGTLTSVATLETSGEGYGAVDYQLAISKDQQFIYIADPDSGEISVYQLRDGTDGKTLVHTDTKTLEGVNALYLNADGSQLYALSSEGALQIYSVNVSTGALRESGQIKDIGDTRGMVLSPDGQSLLIAGETIQRFSALRTYLYGSDLPFADHIALSDSNLDVLNGGAGNYNGAVVTIGREAPSADDQFGFSTGNNLTLQDGKILQSGTEIGTFTQNQGVLSVTFTADVTKETANNVLKQITYRNVGSQSSAETVMLAVTANDGELNSTVTTVALLLTANSAPTLVSQGGNNLTLDTRGGSVTLFKDTAINTGEAGQALTKLSIGIDGLNNPHQEYLTMDGTVIDLSKDSAGTTVSGYQYTYTYNALSGESSLVLSSVQGISSMAMMKLIDGLSYSAGKESTSANGVRTITLTELQDNGGTANGGSDTATLTISGSVNLALNDAPAIEATYSPDATLFYNAGTLSGYNERVSAISVSQDGKTLLVTGSEGDNNSGKTYLRVYARDAETGKLTLLQSFTQGEQDDPSTPAIEVNGLNTITTLVQSKDGTSVYVAGGSGSAYSLVQFTRDATTGQLSYVGVVATQGMNGVSGLDAAVSEIVLSEDGTSLYTINGVTPTDGSTTKNAVVFFSRDTTSGALTFVGSLIGSDTIPVRSPSGIVLSSDGTSAYISNLGNNSITVLSRDAETGALDYVTTINKSTIAADTNSAEIPQDDRYLNGLQDIVISPDNRFVYVSSNSQGTVSIFSRDVDTGALTYAGTLNLYSAGHIPANALALRELVMSEDGSALYVAAFGSKSLLVFGRDSDSGALTYRNSVELSVNTVNHLAVSADGKNIYAGVSTFFAGLNVLTAAAHAPYSQTADMPFATSVTLSDPELDAADDYEGATITVSRNGDASANDHFAFQDGDDLTLAGSSIQYQGATIATFNVSEGAVTIVFTESVTKTVVNQVLHQVTYRNEGDTAGSSIPLKVTFSDGAKETSLLLTLVPNKPPVVDNVEYVPPSATAGQSYTAELPENLFRDPENGALTLQVNGLPAGLTFDPDTRTISGTPALNGAGSFAITVVASDASGEQSEQTLTLSIASDPAQVPTIGGESSALQNVGTLDGYDSNSYVDVLNGVKDSELSADGKTLYVVSSPESGSAVLSVFVRDAEGKFTLSKTFFNYRSVYNEETEQNDEVVDHAGLAGASDVTLSSDGQYLYVIGSEGNAVTLFRVGSDGELTQAGVLDQAELGGRSLDVRSQIVSQGDYLYVTAAQPNSNIDDSRSVLVFKREADGKLTSVSQAADNLIGASRLVLDPTGRYLFVSGSGSTVGVTAFSVDEQGALAQVGQISGTSEYYINGLALSPDGKTLYAIHADVGNYTLNTIAVGANGLLTLVSTEPFADDGGDSGEALASNLVVSADGTALFVIGKNITIFSRAEDGSLTLKQTISSGWDSSLGISFSSLQNIELSADGKQLYLVGGDKIHVLNVGTAGATYTEGNDATVLLPSGRLSDPQLDALNNGVGDYNGATITVGRQEGGQPEDTFGLKADNGLTLDGDTILKGGVAIATFTQVDGVLTVTFTASVTQADAQNVLRQITYQNTSQDPEQAGSSPAFTFSMNDGDNNTTSMDITVNLIGVNDPSTLTTTVLNPQIPGNGEFVKLFKDTHVDTIESGQTIWQVVLTFDVSGPNETISVDGSTIVLEKSNGTPRTASGLQYSVDVKDGKATVLLYVGRDASGTAAIIDSIGYNYLGSNPSGERHVTLMIKENNYNGTAPETKLDQAITLTLVPAAEANTAPVITIPGTTPTYTERADPIVLAPDATVSDAQMDKLNGGKGNYDGATLKITLGDGKTALDKLGFSAENGLTLSGDTLQKDGVTIGQVSNQDGVLTIRFNANAGTIPTTEDVQNTLRQITYASDSRTPAAQVAVTVTLSDRYLDSQVTALSVAITAINDTPVVANDPVLSADELRLVNTYTAISGLGTVTAAARTTDGLAVYVSDDKGAIALFQRDANSGELTYVRTFAAAEGVTGISQLQVSAEGNSVYALRADGNAIVWFSRDENGELTHKATIASDYDIDNGNLNNIKGIALSDDGKNLYLINSYSDQLAYFSRDTATGALTYVEALGGDMNNPPYLWAPTSILSRGNLLFVTTAINDTSTVIVYQRDDSGKLTPLGHVRDFTDAADNTVQLSGLEQITVSADGRSIFVANAEHIDAFTLDTATGAFTHIARVAAEGTVSDIALSADARVLYVTQSDGALTRYVLNDQTLTKLDTLKNAGTSFAHLLPVDGGLIALGNGVSVLDEVSRLPVYRVDSPAIIVAPSIVLSDAELDALNGGAGNYQGASITLQRGETASAGDRFDFAAGNGFTLANGVISKDGQAVATFTQADGKLTVTFTAAISRADATALARQISWATSAPLTGNATSLTLVLNDGAADSAAQALGVTLSREVNLPPMGHAEQFTPPSAQAGTRWSYTLPGTLFTDPENNALTFTVNDAQLPDGVRFDSATRTFSGTPSAAGVFNLTITATDSAGNATAMNVALTVNAASTPVDPGTPTEPVNPDNTATAAPVILVQQGVSLPADSGEREREQPLGTIVADLSRPEAQPLPNNIVTESVRQRDADTARQSDAPWVLDPVMSSLMPTLEQVNFSSRAEASTRDNAALRPADSNLFLSVRGQTTALESAFSSVQGALQPDASGTLAFSLPQRMFSVREGNATLTLQLANGRPLPAWVQFDARNGVVRITDASAVQVNQIQLALKAQAADGTSRIVPITLQTGQGDGAEMATDRGAMQLPAHSDALPAENRDAEQLAPAGKTAFTEQLRQHQPEQEALLAALSELSSLRT
>NZ_QZDI01000003.1|WP_119870608.1|73270_74890_+|hypothetical-protein
MKKTLQNRRVKKDATGITLFWRERLPAFIQEEKGAGTGFYALGAMALLVTAAFIVDTSTATGDATQIKRATDAAALAVGHQATINGEEYSQEETNKLAYDYVKNNLGMNKALSEKLEVGDVAVTEGRNSETRKTYTVTVAFETKPSLLSLGARKQEVFSTAEVINRPTEVAFVMPVTGDMSEGDIRSLKSVSRSFVERMLSSADGKRDNLWLSLVPYSQSVSVYDAADANRIRRWSAPGALNPPELRSLFASGVVSSMADRRFPDRRANLLCMYRGLGREENFFWDEPPVGQFKVYYRHDLPQNGSPGAPPISWRGPNPDFDDTDAVDTRWIVADRGCPNAALMPLTNEESKLNQRIDQFSARFNVNYAIGMSWAGAALSPNMRGSDGWGDATLPLDFNLDGNGDGQKVIVMLANTIGNWFDTDGYNFNRNAFSGQTGTDPARTFAAQRFRDLCSSFRARNIKFYFVGIRPGDPEDFGRNLFDAEATPGLLICTEGEKRMSFIDGAGFGAEGVEDQLIRRLDRIAGQIETEGGYVRLVE
>NZ_QZDI01000003.1|WP_119870607.1|72424_73075_+|hypothetical-protein
MTERLLKTSRLLKLSLLLKTSRFLSGMRRFWLSRRASTAVETALAFPIVLAIGALCADIYTVGLERTRMEQRAGAIASILAMQQKLDDSGLQGLLDTVLPTEGLGNYQLLISNVRQTGELHWQLSRGTAEALCAESETLPGEEYLPELPERDREEGSKNISMIVVEICRQGKDVGLLGGLSLGGLLHASSVNRVAVDVVELDEVLRKEAGLEEKEQ
>NZ_QZDI01000003.1|WP_039282081.1|71880_72432_+|hypothetical-protein
MAWFRNLGPWRGDGSIVPRHERHWRSTRGVIATEVAFLVPVVLVGVMMLFELARIGLVIAAGSAALDKAVQAFRLDNLASDSAEQMGTRLKARMVEAGYGYLKEDDLTVSVLHFDNLSQLGGLTNGNGNQDNPNGEETTTLPVWSVTVQIKKAFITPLPEVLTLGDTFRYQYKHVFGTELRND
>NZ_QZDI01000003.1|WP_119870606.1|71029_71881_+|tetratricopeptide-repeat-protein
MVDLVAKLKRGAPMLALLIVSTVLAGCGSSMAIKGSKDEGLRLARLLRDQGRVEAATEVYARLDSRDALKGAEMLEYASVAALARSPQQTLELYGRARQALGGDTNKMTPEEALAVCLGMGRAQLALGRNAMAQTDFACALKAQPNDAGALNGMGVVMDASGKHAEARQLFEKALQINPADVAALNNLALSWLASGNADKAISLLRSVDDSNATGRLNLALAYLSGGKDDEARSALATIAQPQRIDGLIDELNQRLQQMQQDKSRGEALLLSSRQRLQLSTPE
>NZ_QZDI01000003.1|WP_010295745.1|94182_95841_-|cation/acetate-symporter-ActP
MKIRFMMLFGLLTLPVLAWAADALTGDVQRQPLNIQAIVMFLLFVGGTLYITYWASKKTRSRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLQQRPIRSLSACGSLVVVALYLIAQMVGAGKLIELLFGLNYHIAVVLVGILMVMYVMFGGMLATTWVQIIKAVLLLFGATFMAVMVMKSVGFSFDTLFKQAMAVHPKGASIMSPGGLVSDPISALSLGLGLMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFMGYFYFLTFIIGFGAILLVSANPAFKDATGALIGGNNMAAVHLADAVGGDFFLGFISAVAFATILAVVAGLTLAGASAVSHDLYSNVIKKGKATERDELKVSKITVLVLGVVAISLGILFENQNIAFMVGLAFSIAASCNFPIIIISMYWSKLTTRGAMIGGWAGLLTAVILMILGPTIWVKILGHATPIYPYDYPALFSMLVAFIGIWFFSITDRSEAGQQERARFHAQFVRSQTGVGASKGSSH
>NZ_QZDI01000003.1|WP_010295748.1|95837_96149_-|DUF485-domain-containing-protein
MNDAIYQRIESNPLFRELVNKRQRFAAFLSLIMLVLYVGFILLIAFAPGWLGTPIAPGSSITRGIPIGVGLIAISFILTGVYVYRANGEFDRLTKQLLDEVKQ
>NZ_QZDI01000003.1|WP_119870614.1|96274_98236_-|acetate--CoA-ligase
MTQHNKHAIPASIAENALINAQQYKNMYQLSVDDPDAFWGEQGKIVDWIKPYKTIKNTSFDPGHINIRWFEDGTLNVAANCLDRHLAERGDQTAIIWEGDDATESKKVTYRELHQSVCRFANVLKSQGVKKGDVVAIYMPMVPEAAVAMLACARVGAIHSVIFGGFSPEAISGRIIDSNAKLVITADEGVRAGRVIPLKKNIDEALKNPNVTTISSVIVFRRTGKIGEWQDGRDLWWHDLVEKADDHCPPEEMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGAITLMFEGVPTWPDASRMAQVVDKHKVNILYTAPTAIRALMAEGDKAIEGTSRESLRIMGSVGEPINPEAWEWYFNKIGNGKCPIVDTWWQTETGGFMITPLPGAIEPKAGSATRPFFGVQPALVDNLGNPQEGTAEGNLVIVDSWPGQARTLFGDHDRFEQTYFSTFKGMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHHMKGQAIYAYITLNHGEEPSSELYTEVRNWVRKEIGPIATPDILHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQAMSTASQ
>NZ_QZDI01000003.1|WP_010282300.1|99137_99530_+|hypothetical-protein
MSLIFGRNEILGMLSQPVQNDRRAVAVIDEKCKVVCANSAFNAHFGLRAEMNTPVSIDDVLPINVKFAYHDFMTNSNMLSTRVVSDLLSDGFTKKQLSTLSFSKLNVENRVLSLLILNQDAVEPSTNLAS
>NZ_QZDI01000003.1|WP_119870615.1|100254_102648_+|TonB-dependent-siderophore-receptor
MVKFRTHLLARTLRAGVLGASFASVLPMATAYAASAAPVQQYAVSSGPLNQVLNQFAQQAGVLLSYDPAVVAGKRGAGLQGNYSVEQGFQQILSNSGLSAQYSADGSVTLVQRTASDPVPVSAPVTAKNDRIVVTAPPNTAMKLDVPISETPRAVAVVTEKQIEERGAQKIDQALRYSSGILATPYGPDNKAEWVTIRGFSDQSRFQNGLATLNEDGFYGQQIEAFGVERIEVLKGPASVLYGQNPPGGLVNVITKRPTRLPQGKIELEYGSNDYRHLAVDSAGPLNDDGSVLYRVVALARDTSGEMDFSKSKRLYLAPSVTFLGEDTELTVLASYMDTKSDTTNGFKLPYGTLHGTPFGKVGYKTSLGEPGMNRHDTRQFTLGYEFTHHLNDTWTFHQNVNYTYLNLDLRNAYALGMYTDPVTNVVSDRLANRGLTYRDGFAQNWATDNRLVGEWQWEDIENTLLLGFDYRRANTQSRDGNLYSFGQPIDIFNPVYGNYTSPDSQLFAHRSGRHQTGYYVQNQIKYDERLIFLLGGRYDVAKSRDRNFSSGADTRTDDTKFTKTAGVMYLFDNGISPYVSYSESFLPVSGRDGYQRPYVPEEGQQTEMGVKYTPEGFNGYASAALFNLEQKNVKTTDPKNPNLTIQAGEARSRGLELEFSGEVYTGLTLTANYTYNEVETTKSGSVGEVGKRLPGLPEQIVSGWATYAFNGKLEGLSIGSGVRYVGSSYGDIANSADMKVPAYTLWDAMIAYDFSKDWRLQVNATNLTNREYVSACNYWCYYGEGRNVSANVSYRW
>NZ_QZDI01000003.1|WP_119870616.1|102811_103336_+|sigma-70-family-RNA-polymerase-sigma-factor
MKSPAAVCPNQPETLTVQQIYHDHHAWLQAWLRRRLGCSQQAADLAQDTFLRLICQHQTDLIREPRAWLTTVAHGLVVNHWRRKDIENAYLQVLAEQEFTFSPSLEQQAMVVDALMAIDQMLATLPGKVRQAFLLVHLDGLTYRQVAEQLAVSERMVKKYMAQAMLNCLLCQDL
>NZ_QZDI01000003.1|WP_119870617.1|103332_104280_+|DUF4880-domain-containing-protein
MISSITSSIPKDVLHAASEWYATLYDEDCSEHERQAWQRWLHQDDTHRLAWQQVEQIHARFHAVDSQLASSVLSKRGGERRRMLKLLAIASLTGGVGFSLPWESYAADYHTGTGETRELDIETGMTVWLNTDSALNQQGNPALSQPLTFQLLKGELMLDNRTAHAARLTTPHGDLAASAHSCQLALRYTSAHSVLSVFSGEVLLQTAVPAAQRVTAGQQVIFTRDRSSEPAPVENFRQSWRKGQLVADNMPLGQLVNEIARYHHGYFHVDSAVAMLRISGVFPLHETDRLLDAITRTLPVKVTRRFSWWVDIRPS
>NZ_QZDI01000003.1|WP_039274271.1|104450_105461_+|AI-2E-family-transporter
MQLLNLKQARLLSFFFIMGGLLILLPLRLLACFIAGFLVYEIVNLLTPYFQRVISGKRARWIVVAVISTLVVSLLSLLFGSLVGLLMQEMKDTAAFNVRIGYILNDIQQQIVHYLPGYLPVSIEELQHELLQWVQAHIVMLQNMGKSFLHGFVTMLIGMVLGAIVSLYNVDKDTEKPLLKAELLRRVSLLSASFRNIVFAQVKISAVNTVLSAIFILGALPLCGVHLPFAKTLVVLTFVFGLLPVIGNLISNSIVFLSGLSLSLPIALVALVYLMLIHKFEYFLNAQIVGTRIKAHAWEILLAMLVFEAAFGLSGVIAAPIYYAYLKSELKEAALI
>NZ_QZDI01000003.1|WP_119870618.1|105554_107081_-|MFS-transporter
MNKPISFKHTFCYGSANLLGSGALAISGAWLMYFYTTFCGLTLVQAAAIFSVASIIDAISNPIMGYISDNFYNTQVGRRFGRRRFFILLGVPLVLVYPMLWVEGFGFWYYLATYVLFELIYTSIMVPYETLATEMTSDFKLRSKLTGSKAIFGKIANFLAAFIPGQFIAIYGKDSATPFFYTGLVYGAIMCAAMIALYMTSWERPVNEIVRESTSGLWQAMKKLSVDMVSTFRLRIFRKHLGMYLFGFGAEWLFASAFTYFIVFGLKQNTALVSHLNSFSSIMQLISTAAFIGICVKMGFARPFRLALMVVIVSVMAYAALYFANWSEDMTIFVLFAITAVFGLSTGGIYYIPWTVYTFLADVDEVLTGRRREGIYAGAMTFAGKMVRSVIVFAMGWTLSQFGFVSGQSVQPETAVQAIVGVFSLGVIGLALVAIYYTTQMKLDRKNHAILLEEIARIKAGGAIADVPAHARAVAEELTGWEYEKCWGNNPLGVQSEEAKPQVATAQH
>NZ_QZDI01000003.1|WP_039274275.1|107464_107839_+|hypothetical-protein
MSHLLVYAIIYVIFIAVVGLFAFQAWLPSSAPRGLRDRAGILVGVLRCVTLFLVVSALQILFPNSLLDKLVWLVAVAMLVIAVIGGGMSWSSLPWLDETKGKSRTLVLGVQSALYLALLGFIVI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

126484 : 175591

Pectobacterium_phage(65.38%)

head,plate,integrase,terminase,holin,tail

attL 126359:126384|attR 174696:174721

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
126359:126384	attL	NA	NA	NA	NA
WP_119870626.1\|126484_127672_-\|integrase	site-specific integrase	I6PDJ1	Cronobacter_phage	1.1e-160	73.6
WP_119870628.1\|127887_129000_-	recombinase RecT	K7PKR8	Enterobacteria_phage	1.5e-103	52.8
WP_119870629.1\|129010_132157_-	exodeoxyribonuclease	K7P6V4	Enterobacteria_phage	1.8e-250	49.6
WP_119870630.1\|132297_132576_-	DNA breaking-rejoining protein	H6WRX2	Salmonella_phage	4.2e-15	44.4
WP_119870631.1\|133266_133455_-	DUF1482 family protein	NA	NA	NA	NA
WP_119870688.1\|133917_134310_-	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	8.5e-38	63.4
WP_119870632.1\|134432_134666_+	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	9.5e-21	62.7
WP_119870633.1\|134668_135229_+	hypothetical protein	M9NZI6	Enterobacteria_phage	8.7e-20	32.4
WP_119870634.1\|135243_135468_+	hypothetical protein	NA	NA	NA	NA
WP_119870635.1\|135506_136163_+	hypothetical protein	A0A077KCB2	Edwardsiella_phage	3.1e-77	59.2
WP_119870636.1\|136162_137140_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	1.0e-79	53.3
WP_158586001.1\|137048_137576_+	replication protein	A0A0U2JGJ0	Escherichia_phage	4.2e-48	59.4
WP_158586002.1\|137619_137877_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_119870638.1\|137873_138833_+	hypothetical protein	H9C168	Pectobacterium_phage	3.3e-27	35.5
WP_119870639.1\|138829_139081_+	hypothetical protein	H9C169	Pectobacterium_phage	2.4e-38	94.0
WP_119870640.1\|139077_140010_+	hypothetical protein	A0A141GF13	Brucella_phage	2.2e-28	42.9
WP_119870641.1\|140006_140351_+	hypothetical protein	NA	NA	NA	NA
WP_119870642.1\|140343_141090_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.5e-80	88.2
WP_119870643.1\|141086_143027_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	7.5e-260	71.0
WP_119870644.1\|143123_143345_+	hypothetical protein	H6WRY6	Salmonella_phage	2.2e-19	62.5
WP_119870645.1\|143414_144008_+	DUF1367 family protein	H9C173	Pectobacterium_phage	1.8e-63	57.9
WP_119870646.1\|144004_144289_+	DUF1364 family protein	G8C7V5	Escherichia_phage	1.2e-38	80.6
WP_119870647.1\|144285_144642_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	7.7e-46	72.6
WP_119870648.1\|144638_145244_+	hypothetical protein	H9C175	Pectobacterium_phage	1.2e-102	89.5
WP_119870649.1\|145656_146691_+	DNA cytosine methyltransferase	H9C177	Pectobacterium_phage	5.7e-190	95.0
WP_119870650.1\|146732_147056_-	hypothetical protein	NA	NA	NA	NA
WP_119870651.1\|147055_147262_-	hypothetical protein	NA	NA	NA	NA
WP_119870652.1\|147248_147476_-	hypothetical protein	NA	NA	NA	NA
WP_119870653.1\|147484_147844_-	hypothetical protein	NA	NA	NA	NA
WP_119870654.1\|147859_148141_-	hypothetical protein	NA	NA	NA	NA
WP_119870655.1\|148148_148514_-	hypothetical protein	NA	NA	NA	NA
WP_119870656.1\|148631_148889_+\|holin	holin	K7P6H9	Enterobacteria_phage	6.0e-24	64.8
WP_119870657.1\|148885_149434_+	lysozyme	Q71TF3	Escherichia_phage	1.2e-69	69.9
WP_119870658.1\|149412_149982_+	hypothetical protein	H9C185	Pectobacterium_phage	3.6e-61	73.3
WP_119870660.1\|150282_150537_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	3.6e-37	91.7
WP_119870661.1\|150559_150838_+	hypothetical protein	NA	NA	NA	NA
WP_119870662.1\|150839_151892_+\|terminase	terminase small subunit	Q6V7Q7	Burkholderia_virus	1.2e-41	41.3
WP_119870663.1\|152124_153765_+\|terminase	phage terminase large subunit	H9C191	Pectobacterium_phage	0.0e+00	99.1
WP_119870664.1\|153767_155159_+	DUF1073 domain-containing protein	H9C192	Pectobacterium_phage	6.4e-221	80.8
WP_119870665.1\|155208_155958_+\|head	phage head morphogenesis protein	H9C193	Pectobacterium_phage	1.7e-132	98.0
WP_119870666.1\|155967_157170_+	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	5.1e-166	91.4
WP_119870667.1\|157169_157682_+	hypothetical protein	H9C195	Pectobacterium_phage	7.9e-68	81.3
WP_119870668.1\|157699_158635_+	DUF2184 domain-containing protein	H9C196	Pectobacterium_phage	9.4e-144	79.1
WP_119870690.1\|158624_159083_+	hypothetical protein	H9C197	Pectobacterium_phage	9.0e-47	68.8
WP_119870669.1\|159112_159535_+	DUF4054 domain-containing protein	H9C198	Pectobacterium_phage	3.7e-63	87.1
WP_119870670.1\|159531_160119_+	hypothetical protein	H9C199	Pectobacterium_phage	1.9e-57	64.1
WP_119870671.1\|160121_160544_+	hypothetical protein	H9C1A0	Pectobacterium_phage	5.9e-77	94.3
WP_119870672.1\|160543_161068_+	hypothetical protein	H9C1A1	Pectobacterium_phage	2.8e-92	96.0
WP_119870673.1\|161076_162231_+	DUF3383 family protein	H9C1A2	Pectobacterium_phage	2.8e-206	94.8
WP_119870674.1\|162236_162641_+	hypothetical protein	H9C1A3	Pectobacterium_phage	2.0e-66	94.8
WP_119870675.1\|162643_163045_+	hypothetical protein	H9C1A4	Pectobacterium_phage	2.3e-62	94.7
WP_119870676.1\|163318_163702_-	hypothetical protein	NA	NA	NA	NA
WP_119870677.1\|163743_165507_+	lysozyme	H9C1A7	Pectobacterium_phage	1.9e-299	92.2
WP_119870678.1\|165509_166154_+	hypothetical protein	H9C1A8	Pectobacterium_phage	7.8e-89	98.1
WP_016060804.1\|166150_166441_+	hypothetical protein	H9C1A9	Pectobacterium_phage	4.2e-50	100.0
WP_119870679.1\|166433_167321_+	hypothetical protein	H9C1B0	Pectobacterium_phage	2.3e-171	97.3
WP_119870680.1\|167320_167977_+	hypothetical protein	H9C1B1	Pectobacterium_phage	3.5e-113	92.7
WP_119870681.1\|168033_168384_+	hypothetical protein	H9C1B2	Pectobacterium_phage	4.3e-57	94.0
WP_119870682.1\|168383_169586_+\|plate	phage baseplate protein	H9C1B3	Pectobacterium_phage	2.0e-215	97.0
WP_119870683.1\|169578_170487_+	DUF2612 domain-containing protein	H9C1B4	Pectobacterium_phage	3.8e-150	92.1
WP_119870684.1\|170489_171872_+	hypothetical protein	A0A2D2W7C0	Pectobacterium_phage	4.3e-92	39.7
WP_119870685.1\|171930_173901_+\|tail	phage tail protein	H9C1B7	Pectobacterium_phage	0.0e+00	90.4
WP_119870686.1\|173912_174482_+	hypothetical protein	H9C1B8	Pectobacterium_phage	2.5e-99	93.7
WP_039281975.1\|175108_175591_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	3.0e-29	48.7
174696:174721	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_QZDI01000003.1|WP_119870653.1|147484_147844_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_QZDI01000003.1|WP_119870654.1|147859_148141_-|hypothetical-protein

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Acr_ID: NZ_QZDI01000003.1|WP_119870655.1|148148_148514_-|hypothetical-protein

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Acr_ID: NZ_QZDI01000003.1|WP_119870652.1|147248_147476_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_QZDI01000003.1|WP_119870653.1|147484_147844_-|hypothetical-protein

147484_147844_-

119 aa aa

AcrIF17.1

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3647\|WP_102117861.1\|AcrIF17.1\|I-F\|Verified\|Pectobacterium-carotovorum-(Erwinia-carotovora)	0.7256637168141593	0.957983193277311	0.9741379310344828

NZ_QZDI01000003.1_147055_147262_-

Protein_id	Hit_Aca_id	Identity	Query_coverage	Hit_coverage
NZ_QZDI01000003.1_147055_147262_-	WP_039558032.1	0.5	0.9117647058823529	0.95

126484-175591

NZ_QZDI01000003.1|WP_119870654.1|147859_148141_-|hypothetical-protein

147859_148141_-

93 aa aa

AcrIF19

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3650\|WP_119870654.1\|AcrIF19\|I-F\|Verified\|Pectobacterium	1.0	1	1.0

NZ_QZDI01000003.1_147055_147262_-

Protein_id	Hit_Aca_id	Identity	Query_coverage	Hit_coverage
NZ_QZDI01000003.1_147055_147262_-	WP_039558032.1	0.5	0.9117647058823529	0.95

126484-175591

NZ_QZDI01000003.1|WP_119870655.1|148148_148514_-|hypothetical-protein

148148_148514_-

121 aa aa

AcrIF20.1

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3651\|WP_119870655.1\|AcrIF20.1\|I-F\|Verified\|Pectobacterium	1.0	1	1.0

126484-175591

NZ_QZDI01000003.1|WP_119870652.1|147248_147476_-|hypothetical-protein

147248_147476_-

75 aa aa

NZ_QZDI01000003.1_147055_147262_-

Protein_id	Hit_Aca_id	Identity	Query_coverage	Hit_coverage
NZ_QZDI01000003.1_147055_147262_-	WP_039558032.1	0.5	0.9117647058823529	0.95

126484-175591

7. NZ_QZDI01000014

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

25211 : 38662

Pseudomonas_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014914571.1\|25211_27851_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	A0A172JHV7	Bacillus_phage	4.5e-106	31.5
WP_119871047.1\|28136_28856_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	A0A1B1IVA4	uncultured_Mediterranean_phage	4.6e-05	31.9
WP_039466786.1\|29205_31491_+	ribonucleoside-diphosphate reductase subunit alpha	A0A2D1GNB1	Pseudoalteromonas_phage	7.1e-286	63.7
WP_010284080.1\|31613_32744_+	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	4.8e-174	79.1
WP_010284079.1\|32747_33008_+	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	3.8e-18	61.5
WP_104213329.1\|33275_34190_+	SPFH/Band 7/PHB domain protein	A0A2K9L3L2	Tupanvirus	9.9e-21	31.3
WP_014914568.1\|34189_34645_+	NfeD family protein	NA	NA	NA	NA
WP_010284076.1\|34681_35089_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_119871048.1\|35206_37930_+	copper-exporting P-type ATPase CopA	A0A218MNH6	uncultured_virus	1.5e-109	37.4
WP_039312292.1\|38025_38457_-	CopG family transcriptional regulator	A0A0R6PJ17	Moraxella_phage	6.3e-18	36.6
WP_119871049.1\|38479_38662_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.8e-06	51.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

8. NZ_QZDI01000054

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11322 : 17877

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_119872214.1\|11322_12360_+	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	4.7e-11	23.9
WP_039285999.1\|12426_12978_+	glutathione peroxidase	Q6VZR0	Canarypox_virus	1.3e-15	34.3
WP_119872215.1\|12978_13755_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A285PWH2	Cedratvirus	1.8e-07	29.5
WP_039468079.1\|13902_14376_+	endopeptidase	A0A2H5BM69	Streptomyces_phage	3.3e-12	38.6
WP_119872216.1\|14415_15432_+	lipoate--protein ligase A	NA	NA	NA	NA
WP_119872217.1\|15608_17060_+	YdiU family protein	A0A075BSJ0	Microcystis_phage	9.8e-55	38.0
WP_095699839.1\|17079_17877_-	heme ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	3.9e-13	28.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

9. NZ_QZDI01000001

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_QZDI01000001_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_QZDI01000001_1

112019-112099

Orphan

Consensus_repeat	Method
AGCAGGGCTGGCAGTGGCTTAAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_QZDI01000001_1

>merge|NZ_QZDI01000001|1|112019-112099|CRISPRCasFinder
AGCAGGGCTGGCAGTGGCTTAAAGGGCTAAATCCGAAAGGTTTATGGCGGGGCATTTTACAGGGCTGGCAGTGGCTTAAAG

>NZ_QZDI01000001|1|1|112019-112099|CRISPRCasFinder
AGCAGGGCTGGCAGTGGCTTAAAG	GGCTAAATCCGAAAGGTTTATGGCGGGGCATTT
TACAGGGCTGGCAGTGGCTTAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_QZDI01000001.1\|WP_010281040.1\|107222_107420_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QZDI01000001.1\|WP_119870444.1\|116068_117172_+\|baseplate-protein	unknown	unknown	gnl\|CDD\|226457
NZ_QZDI01000001.1\|WP_010281043.1\|107409_108837_+\|tail-protein	unknown	unknown	gnl\|CDD\|164955
NZ_QZDI01000001.1\|WP_039509054.1\|115090_115672_+\|phage-baseplate-assembly-protein-V	unknown	unknown	gnl\|CDD\|226915
NZ_QZDI01000001.1\|WP_039527428.1\|112814_113744_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377754
NZ_QZDI01000001.1\|WP_010281046.1\|108836_109361_+\|phage-major-tail-tube-protein	unknown	unknown	gnl\|CDD\|130672
NZ_QZDI01000001.1\|WP_086002476.1\|110118_110262_+\|GpE-family-phage-tail-protein	unknown	unknown	unknown
NZ_QZDI01000001.1\|WP_157765228.1\|119569_119725_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QZDI01000001.1\|WP_039287185.1\|109853_110174_+\|phage-tail-assembly-protein	unknown	unknown	gnl\|CDD\|378397
NZ_QZDI01000001.1\|WP_010286901.1\|115730_116078_+\|baseplate-protein	unknown	unknown	gnl\|CDD\|226155
NZ_QZDI01000001.1\|WP_014914964.1\|113733_113946_+\|membrane-protein	unknown	unknown	gnl\|CDD\|283209
NZ_QZDI01000001.1\|WP_119870441.1\|105228_105903_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QZDI01000001.1\|WP_014914969.1\|117164_117746_+\|phage-tail-protein-I	unknown	unknown	gnl\|CDD\|370616
NZ_QZDI01000001.1\|WP_039519061.1\|113933_115094_+\|phage-late-control-D-family-protein	unknown	unknown	gnl\|CDD\|226031
NZ_QZDI01000001.1\|WP_010281036.1\|106214_106526_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QZDI01000001.1\|WP_119870445.1\|120027_120996_+\|DNA-binding-protein-YbiB	unknown	unknown	gnl\|CDD\|236160
NZ_QZDI01000001.1\|WP_100017067.1\|109417_109714_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|177056
NZ_QZDI01000001.1\|WP_119870442.1\|106758_107226_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370600
NZ_QZDI01000001.1\|WP_010281034.1\|105892_106222_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QZDI01000001.1\|WP_039287146.1\|121082_122951_+\|peptidase-M3	unknown	unknown	gnl\|CDD\|224086

Protein	Function_ID	Function_description	E-value
NZ_QZDI01000001.1\|WP_119870444.1\|116068_117172_+\|baseplate-protein	gnl\|CDD\|226457	COG3948, COG3948, Phage-related baseplate assembly protein [General function prediction only].	5.43419e-80
NZ_QZDI01000001.1\|WP_010281043.1\|107409_108837_+\|tail-protein	gnl\|CDD\|164955	PHA02560, FI, major tail sheath protein; Provisional.	6.00057e-123
NZ_QZDI01000001.1\|WP_119870442.1\|106758_107226_+\|hypothetical-protein	gnl\|CDD\|370600	pfam09646, Gp37, Gp37 protein. This protein of 154 residues consists of a unit of helices and beta sheets that crystallizes into a beautiful asymmetrical dodecameric barrel-structure, of two six-membered rings one on top of the other. It is expressed in bacteria but is of viral origin as it is found in phage BcepMu and is probably a pathogenesis factor.	3.84338e-60
NZ_QZDI01000001.1\|WP_010281046.1\|108836_109361_+\|phage-major-tail-tube-protein	gnl\|CDD\|130672	TIGR01611, tail_tube, phage contractile tail tube protein, P2 family. The tails of some phage are contractile. This model represents the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from additional phage. [Mobile and extrachromosomal element functions, Prophage functions].	2.27059e-79
NZ_QZDI01000001.1\|WP_039287185.1\|109853_110174_+\|phage-tail-assembly-protein	gnl\|CDD\|378397	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14. This is family of various Myoviridae bacteriophage tail assembly chaperone, or TAC, proteins.	2.13218e-14
NZ_QZDI01000001.1\|WP_010286901.1\|115730_116078_+\|baseplate-protein	gnl\|CDD\|226155	COG3628, COG3628, Phage baseplate assembly protein W [General function prediction only].	1.07681e-32
NZ_QZDI01000001.1\|WP_014914964.1\|113733_113946_+\|membrane-protein	gnl\|CDD\|283209	pfam05489, Phage_tail_X, Phage Tail Protein X. This domain is found in a family of phage tail proteins. Visual analysis suggests that it is related to pfam01476 (personal obs: C Yeats). The functional annotation of family members further confirms this hypothesis.	8.20525e-09
NZ_QZDI01000001.1\|WP_014914969.1\|117164_117746_+\|phage-tail-protein-I	gnl\|CDD\|370616	pfam09684, Tail_P2_I, Phage tail protein (Tail_P2_I). These sequences represent the family of phage P2 protein I and related tail proteins from a number of temperate phage of Gram-negative bacteria.	6.10625e-26
NZ_QZDI01000001.1\|WP_039519061.1\|113933_115094_+\|phage-late-control-D-family-protein	gnl\|CDD\|226031	COG3500, COG3500, Phage protein D [General function prediction only].	6.41917e-78
NZ_QZDI01000001.1\|WP_039527428.1\|112814_113744_+\|phage-tail-protein	gnl\|CDD\|377754	pfam06995, Phage_P2_GpU, Phage P2 GpU. This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein, which is thought to be involved in tail assembly.	8.74255e-44
NZ_QZDI01000001.1\|WP_119870445.1\|120027_120996_+\|DNA-binding-protein-YbiB	gnl\|CDD\|236160	PRK08136, PRK08136, glycosyl transferase family protein; Provisional.	0
NZ_QZDI01000001.1\|WP_100017067.1\|109417_109714_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|177056	CHL00134, petF, ferredoxin; Validated.	4.96152e-34
NZ_QZDI01000001.1\|WP_039509054.1\|115090_115672_+\|phage-baseplate-assembly-protein-V	gnl\|CDD\|226915	COG4540, gpV, Phage P2 baseplate assembly protein gpV [General function prediction only].	2.09883e-42
NZ_QZDI01000001.1\|WP_039287146.1\|121082_122951_+\|peptidase-M3	gnl\|CDD\|224086	COG1164, COG1164, Oligoendopeptidase F [Amino acid transport and metabolism].	1.83143e-26

>NZ_QZDI01000001.1|WP_086002476.1|110118_110262_+|GpE-family-phage-tail-protein
MLWKAQALLARWFRFQPSEIDALELDDFEHWLDEASEQIKRENGEED
>NZ_QZDI01000001.1|WP_039287185.1|109853_110174_+|phage-tail-assembly-protein
MHTETYSLQFPYTTSAGQRVESISLKRLKVKDIKAVKKISDDPSNWDDALLSRMTGLVPEDIDEMDAQDYMALQKRFQQLLGLDNAAGAAVESAGPAGEVVSLSAE
>NZ_QZDI01000001.1|WP_100017067.1|109417_109714_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MSAKVFDIIDLENNIHFQCREDVYILDAAEEAGFDLPYSSRAGADSASVARLISGQVDQSDQSYLDDEQIAAGFFLSDVAYPLSDCVVRFFAEDELPR
>NZ_QZDI01000001.1|WP_010281046.1|108836_109361_+|phage-major-tail-tube-protein
MAGKIEVNRITNANIYINGTNLLGRAQEIKLPDISMIMQEHKALGMVGKIELPAGFDKLEGEIKWNSFYREAMLAAANPYQSLALQCRSSVERYGSQGRIEEVPLVTHMTIMFKKNPLGTFKQHENPDFSSAFSCTYIKQVMNGEDLLELDYLSNIFMVGGVDQLNSYRANIGG
>NZ_QZDI01000001.1|WP_010281043.1|107409_108837_+|tail-protein
MAANYLHGVETIEVETGARPVKTVKSAVIGLIGTAPQGAVNDVTLCLSEKDAAQFGSQFGGYTIPQALDAIYDHGAGTVLVINVLDPAKHKSSVSAEKVTFDKATGTAQLANRVVAKVVLTAAEGGQPFVEGQDYTLDAQTGVLKNLGKNIDVTAVVSASYDFADVTKVTAADIIGSINAAGKRTGMKLLNDTYNLYGFFAKILISPVFCTQNSVTTELIALADKLGAIAYIDAPIGTTFAQALSGRGPEGTINFNTSSERARLCYPHVKVYDAETNSERLEPLSARAAGLRAKVDLDKGFWWSSSNQEIKGITGVERQLSAMIDDPQSEVNLLNEQGISTIFNSYGSGLRLWGNRTAAWPTVTHMKNFENVRRTGDVINESIRYFSQQYIDMPINQALIDALVESVNAYGRKLIGDGALLGFKCWFDAARNEQTELAAGHLLLNYKFTPPPPLERLTFETEITSEYLVTLEGTN
>NZ_QZDI01000001.1|WP_010281040.1|107222_107420_+|hypothetical-protein
MKYRYTGPASGVTLADGQEILLWPAQVTELPADHEYVKTLIALGYLLPVADQVLADSATEVTLGR
>NZ_QZDI01000001.1|WP_119870442.1|106758_107226_+|hypothetical-protein
MNTRPIIDAVIARLQQHLPARRIASCPENILSEPDRLTLGDVLVGYRGSEFSAPEDADSPVQTQRPQLMVAVLLPELDGEDGVLATLDTVRQALGGYRLPDCHRGIRLVRDRYVGYTEGRWHYAIDCTTETLFIEDREQTDGPLLTTVNYEEKDA
>NZ_QZDI01000001.1|WP_010281036.1|106214_106526_+|hypothetical-protein
MADTQRIRQESMRWHLLIALNKTRPYTANEMFLLALMQRLYADASEPELRHALDYLADRKMAVLTKAVGGVWLANLTRLGVDVVEYAVDGMVGIARPEKYWDR
>NZ_QZDI01000001.1|WP_010281034.1|105892_106222_+|hypothetical-protein
MKIEVEFWSLVGLLLSFMSFLFAAGRILLTQIEKRLNERFAALENARQKSEQGWTRLEREFLEFRADLPLIYVRREDYIRGQTVIEAKLDALYNKLELVQQRYSGGNHG
>NZ_QZDI01000001.1|WP_119870441.1|105228_105903_+|hypothetical-protein
MWNSLFLNSLKSFLSPRVVAVLLVVVLLLAVYLTGRHQGYQLAQALGDAELAKQQAAFNLLQQQQAETQNQLLRAAAEQYQQQVERGNQLEQRYVAARQKLAADNAALQRKIDHVTQQYIDEKGKVQPVQCVFTRGFVQHYNAAFGLSANGASDITAAARRTGAASALGATTNTELQPSGVSQRDILANISDNGERYQALSAQVNALLDYIDALQQAGEVTRED
>NZ_QZDI01000001.1|WP_039527428.1|112814_113744_+|phage-tail-protein
MFAVLGNIEFKVTAYWDGFNTSFGADYAEHGRIEGKPGLQFIGAKLDEITISLVFHKQYCTPDVELKRLTEAMRAHQAMALVFGNGDYRGWFVITALTSTSEHTDAKGNVLAMNASLTLREYIGDPKNPLKPPAIETPVPNVSAITTAVQKVSNFSASLRTAVTYAKKAHSAVKAARTTVQIVKRMKDNPETALLQIPGLLTQVGNVLTPLSQVEPAFKKVAEAISDTAVQAEKMMPEITAVNKAANEMLSQVKQVATLLQGVDSKNVIEKLEAISKHVEAASDTFKGAEPALSKLTAEIVKRVEAYAP
>NZ_QZDI01000001.1|WP_014914964.1|113733_113946_+|membrane-protein
MHLEHITTQGERWDTLSYLYYGDPLGYPRIIAANPHVPIVPLLPSGVVVLIPIIEQAEASKAEDTPPWLR
>NZ_QZDI01000001.1|WP_039519061.1|113933_115094_+|phage-late-control-D-family-protein
MAALTEELTLSSPAVSEVLQPAFTLWYLQKDITNDIAPYVTSVTYTDSIKNESDSIEVRLDDTDGRWMDQWYPGTGDTLSLKLGYLGEMLFDCGTFSIDEIEVSAPPSEVMIRGVATSVNRALRTKSNCGFEDTTLAAIATRIAKKHQLMLVGMIQIIKIDRVTQYAETDVAFLKRLASEYGYVVKVVSDQLIFSHLATLRNQASVRQIKPTDVARFSLSDTISHVYKNAKTKYQKGSEKKLVVCEADGGVNNEMKSAGAGTSADTLKVNVRAADASGARMKTDAALDAHNEKQQKGSMTLMGSPQLAAGNKVELVSFGQLSGHWLIESARHILDRSSGYTTEIGLIRGPITAGKRKSESGKTVVTYHPNGSSTTQKAKSKKGAVS
>NZ_QZDI01000001.1|WP_039509054.1|115090_115672_+|phage-baseplate-assembly-protein-V
MSLSRRIGTISAVDEARVMVRVRLPECDNLRTAWLPVLQRNTQNNKDYWLPDIGEQVEVLLDGNGEDGLVLGAIYSAVDVPTLTDKDKRAVTFADGAHIEYDRRTHTLTINGGVQHIAISSGADVVVNAQRVTINAPETTVTGKLLVQGQLTYESGMSGSGGASLSGDVSISGNVSASGSVMDAGGNSNHHSH
>NZ_QZDI01000001.1|WP_010286901.1|115730_116078_+|baseplate-protein
MKTQSVFWQPALQRSGDIVEGTADIMQAIHIILRTPCGSDPHRPDFGSNLHLYLDYPIDRAIPHVVRESVDAIKRWEPRCQLLAVKPSVNGAHLTLHVSWKTANGATQTTELLWR
>NZ_QZDI01000001.1|WP_119870444.1|116068_117172_+|baseplate-protein
MALTEPNFIERDAAKITAEMIAKYEADSGKTLYPAQAERLLINLFAYRETLLRSAVQEAAKQNLVAFARAPMLDYLAELVGVYRLAAQPARAELRFTPETPLVSDLLIPAGTRVSASDSVIFTTDSDALLRANGSGVTVLATCTESGDVGNDWLPAQISTLLDEIGDSDLSVINITKSSGGSAEEDDDRLRERVQLAPESFSTAGSKLAYRFHAMRAHQNIVDVAVMSPEPGEVVLYPLLSTGLPDSSILSLVESFCSDEQVRPLTDFVSAKSPTQVDYAISAKLTLFNGEQAAVVQAAAEKAVQAWVETRTATLGRDIVPSQIIATLSIPGVYQVELVSPSLMVLDDSEWANCTGINVSVIGVSNG
>NZ_QZDI01000001.1|WP_014914969.1|117164_117746_+|phage-tail-protein-I
MADSLQLLPPPLAADASFRSLAELADRFDDIDLNALLVYLIDITDGSVLPWLAEQFSLFGDGWELAESDDSKRALIKAAIDLHRSKGTPWSIKEIIRRFGFGDSTLIENIGRLSYDGETTYNNLYVYGDKAAWAVYRVLLKQPITNDQASMLRNAIGMLAPARCHLASIEYWAVPIRYNRTATYDSNYNHGSA
>NZ_QZDI01000001.1|WP_157765228.1|119569_119725_+|hypothetical-protein
MEPERQLILIGNETEGTRLATEDEIDAHKHSSNTFDVMAKQANEPIVKISQ
>NZ_QZDI01000001.1|WP_119870445.1|120027_120996_+|DNA-binding-protein-YbiB
MDYTKIIKEVGRGKNHARDVDQATAYELYSAMLRGDVPELELGGLLIAFRIKGESEAEMLGFYQAMNEHVLRLTPPAGFPMPIVLPSYNGARKQANLTPLLALLLAKLGFPVVVHGVSDDPTRVTSAEILRNLGVTIAENAEQAQQELDNGSPVFIPVSTLCPAIDRQLQLRWRMGVRNSSHTLAKVGTPFGESDALRVASVSHPEYVSLVGTFFNDINGRALLMHGTEGEVYANPQRCPEIHFIHQQNTKVLQLRQEISVAPDALPIAKDAATTARWTVQCLTGEIAIPQAIRLQLACCLVAAGEAATMEQAVATIKKRLG
>NZ_QZDI01000001.1|WP_039287146.1|121082_122951_+|peptidase-M3
MQQVADYFNALNRDYLAVHQAKEELFWQLYMGTGNDDVSERFSAAESAYKRFISQPQRLAELRTHLATLENSPRDEQQQALSHGLQGWYRFFDCNVIEDPQAQALMDEIITAESALYAKRKSYEMTHLDAKGERVSASLGELLTNQTTNDTEAYRQSSQQALRDLEQWLLQNGFPELISLRNRFARQMGYRNYFDYKVNKTERMTPEQLFAILDPFEEQTREANTRSLKNLADEKGEEALQPWNIRYASAGDVTRQLDPYFPFSASLERWINSFKRLRIGFNGAEMQLDLLVRKGKYENGFMHGPVPPFVQEGKWVPARINFTSLAKPDQIGSGASGINTLFHEGGHAAHFANIRQNAPCFSQEFPPTSMAYAETQSMFCDSLLGDADWLKRYAKNAQGETIPDELIRADISTQQPMRAFSERHILLVPYFEWQLYSWDDEARTPEAMTKLARDTEQRILGISGSPRPTLAIPHLLSMESACSYQGYLLALMAVEQTRSYFLQRDGYLTDNPAIGPDLAQHYWHPGNSVSHDDTLRSLTGEGFNPAYLAQACNLTVDEAWQQAEGMMAKAAARPQPAADFDLSARIRVVDGSRVLADNEQSDEKMCQDFAAFIEREYPRSQA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

81896 : 117746

Burkholderia_phage(31.58%)

plate,tail,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039468732.1\|81896_82829_+\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_039519018.1\|83017_84430_+	S-methylmethionine permease	NA	NA	NA	NA
WP_119870437.1\|84422_85370_+	homocysteine S-methyltransferase	NA	NA	NA	NA
WP_039287236.1\|85386_85935_+	hypothetical protein	NA	NA	NA	NA
WP_014914940.1\|86366_86909_+	class IV adenylate cyclase	NA	NA	NA	NA
WP_014914941.1\|86969_87326_+	FMN-binding protein	NA	NA	NA	NA
WP_119870438.1\|87388_87898_+	hypothetical protein	NA	NA	NA	NA
WP_014914943.1\|88047_88995_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_039468748.1\|89072_89759_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_014914945.1\|90155_92462_+	beta-glucosidase BglX	NA	NA	NA	NA
WP_039273042.1\|92562_93102_+	isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_119870439.1\|93390_94038_-	LysE family translocator	NA	NA	NA	NA
WP_094371351.1\|94090_94936_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_039527409.1\|95118_97218_+	ATP-dependent DNA helicase DinG	A0A127AW80	Bacillus_phage	2.5e-43	25.6
WP_039468759.1\|97738_99169_+\|protease	serralysin family metalloprotease	NA	NA	NA	NA
WP_010281012.1\|99274_99586_+\|protease	AprI/Inh family metalloprotease inhibitor	NA	NA	NA	NA
WP_039509044.1\|99603_101331_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	8.7e-26	33.6
WP_039509045.1\|101358_102687_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_119870440.1\|102689_104057_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_010281025.1\|104296_104626_+	membrane protein	A4JWP3	Burkholderia_virus	1.2e-24	58.3
WP_039315950.1\|104627_105239_+	transglycosylase SLT domain-containing protein	J9SHG5	Pseudomonas_phage	8.8e-58	58.6
WP_119870441.1\|105228_105903_+	hypothetical protein	A0A0M5MTM9	Ralstonia_phage	1.3e-06	27.7
WP_010281034.1\|105892_106222_+	hypothetical protein	Q5ZQY8	Pseudomonas_phage	1.5e-19	45.8
WP_010281036.1\|106214_106526_+	hypothetical protein	A0A2H4JGU5	uncultured_Caudovirales_phage	4.7e-23	52.5
WP_119870442.1\|106758_107226_+	hypothetical protein	Q6QIB2	Burkholderia_phage	1.4e-23	40.0
WP_010281040.1\|107222_107420_+	hypothetical protein	NA	NA	NA	NA
WP_010281043.1\|107409_108837_+\|tail	tail protein	A4JWK5	Burkholderia_virus	1.2e-203	73.4
WP_010281046.1\|108836_109361_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	1.6e-68	67.2
WP_100017067.1\|109417_109714_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	V5UTY8	Synechococcus_phage	2.9e-22	63.8
WP_039287185.1\|109853_110174_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_086002476.1\|110118_110262_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_119870443.1\|110478_112815_+\|tail	phage tail tape measure protein	R9TP54	Rhizobium_phage	2.2e-08	22.1
WP_039527428.1\|112814_113744_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	2.1e-42	46.8
WP_014914964.1\|113733_113946_+	membrane protein	A4JWL2	Burkholderia_virus	2.0e-17	58.6
WP_039519061.1\|113933_115094_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	2.3e-83	47.8
WP_039509054.1\|115090_115672_+\|plate	phage baseplate assembly protein V	Q6QIA1	Burkholderia_phage	2.1e-24	45.6
WP_010286901.1\|115730_116078_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	8.6e-34	63.0
WP_119870444.1\|116068_117172_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.5e-103	54.6
WP_014914969.1\|117164_117746_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	3.1e-60	60.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

10. NZ_QZDI01000009

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_QZDI01000009_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_QZDI01000009_1

100592-100698

Orphan

Consensus_repeat	Method
ACGCGCCACACCCTTCGGGCCGTCGCAGGCGACGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_QZDI01000009_1

>merge|NZ_QZDI01000009|1|100592-100698|CRISPRCasFinder
ACGCGCCACACCCTTCGGGCCGTCGCAGGCGACGTTGTAAAATGCCTTTGGCATTTTATTATGGTGGGCTAACGCGCCACACCCTTCGGGCCGTCGCAAGCGACGTT

>NZ_QZDI01000009|1|1|100592-100698|CRISPRCasFinder
ACGCGCCACACCCTTCGGGCCGTCGCAGGCGACGTT	GTAAAATGCCTTTGGCATTTTATTATGGTGGGCTA
ACGCGCCACACCCTTCGGGCCGTCGCAAGCGACGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_QZDI01000009.1\|WP_039509627.1\|96648_97368_-\|murein-tripeptide-amidase-MpaA	unknown	unknown	gnl\|CDD\|182582
NZ_QZDI01000009.1\|WP_119870936.1\|89269_91408_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223588
NZ_QZDI01000009.1\|WP_119870941.1\|99273_100257_+\|zinc-transporter-ZntB	unknown	unknown	gnl\|CDD\|181941
NZ_QZDI01000009.1\|WP_039288902.1\|109884_111438_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|185008
NZ_QZDI01000009.1\|WP_014915621.1\|107965_109519_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|185008
NZ_QZDI01000009.1\|WP_119870940.1\|97533_99150_+\|oligopeptide-ABC-transporter-substrate-binding-protein-OppA	unknown	unknown	gnl\|CDD\|173869
NZ_QZDI01000009.1\|WP_119870934.1\|85967_87512_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349927
NZ_QZDI01000009.1\|WP_119870935.1\|87648_89217_+\|transcriptional-regulator-TyrR	unknown	unknown	gnl\|CDD\|236769
NZ_QZDI01000009.1\|WP_119870937.1\|91404_92712_+\|DNA-processing-protein-DprA	unknown	unknown	gnl\|CDD\|223829
NZ_QZDI01000009.1\|WP_039467686.1\|101138_102074_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	unknown	unknown	gnl\|CDD\|236737
NZ_QZDI01000009.1\|WP_119870943.1\|102801_103956_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QZDI01000009.1\|WP_014915622.1\|106853_107846_-\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240659
NZ_QZDI01000009.1\|WP_119870938.1\|92773_94888_-\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|369942
NZ_QZDI01000009.1\|WP_158586003.1\|105628_105781_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QZDI01000009.1\|WP_119872389.1\|104301_104703_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QZDI01000009.1\|WP_039467677.1\|105815_106154_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|177056
NZ_QZDI01000009.1\|WP_039467674.1\|106529_106820_+\|DUF333-domain-containing-protein	unknown	unknown	gnl\|CDD\|377156
NZ_QZDI01000009.1\|WP_119870945.1\|111810_114402_+\|YdbH-family-protein	unknown	unknown	gnl\|CDD\|182654
NZ_QZDI01000009.1\|WP_014915685.1\|96056_96560_-\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_QZDI01000009.1\|WP_119870939.1\|94914_95697_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_QZDI01000009.1\|WP_039509627.1\|96648_97368_-\|murein-tripeptide-amidase-MpaA	gnl\|CDD\|182582	PRK10602, PRK10602, murein tripeptide amidase MpaA.	1.91003e-165
NZ_QZDI01000009.1\|WP_119870936.1\|89269_91408_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	1.49765e-126
NZ_QZDI01000009.1\|WP_119870941.1\|99273_100257_+\|zinc-transporter-ZntB	gnl\|CDD\|181941	PRK09546, zntB, zinc transporter ZntB.	0
NZ_QZDI01000009.1\|WP_039288902.1\|109884_111438_-\|PAS-domain-containing-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.37473e-63
NZ_QZDI01000009.1\|WP_014915621.1\|107965_109519_-\|PAS-domain-containing-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	3.16003e-66
NZ_QZDI01000009.1\|WP_119870940.1\|97533_99150_+\|oligopeptide-ABC-transporter-substrate-binding-protein-OppA	gnl\|CDD\|173869	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_QZDI01000009.1\|WP_119870934.1\|85967_87512_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349927	cd05678, M20_dipept_like, uncharacterized M20 dipeptidase. Peptidase M20 family, unknown dipeptidase-like subfamily (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine.	0
NZ_QZDI01000009.1\|WP_119870935.1\|87648_89217_+\|transcriptional-regulator-TyrR	gnl\|CDD\|236769	PRK10820, PRK10820, transcriptional regulator TyrR.	0
NZ_QZDI01000009.1\|WP_119870937.1\|91404_92712_+\|DNA-processing-protein-DprA	gnl\|CDD\|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	5.52757e-57
NZ_QZDI01000009.1\|WP_039467686.1\|101138_102074_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	gnl\|CDD\|236737	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional.	0
NZ_QZDI01000009.1\|WP_119870938.1\|92773_94888_-\|calcium-binding-protein	gnl\|CDD\|369942	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal. Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.	2.35641e-08
NZ_QZDI01000009.1\|WP_014915622.1\|106853_107846_-\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240659	cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains. D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.	0
NZ_QZDI01000009.1\|WP_039467674.1\|106529_106820_+\|DUF333-domain-containing-protein	gnl\|CDD\|377156	pfam03891, DUF333, Domain of unknown function (DUF333). This small domain of about 70 residues is found in a number of bacterial proteins. It is found at the N-terminus the of AF_1947 protein. The proteins containing this domain are uncharacterized.	2.02912e-12
NZ_QZDI01000009.1\|WP_119870945.1\|111810_114402_+\|YdbH-family-protein	gnl\|CDD\|182654	PRK10695, PRK10695, YdbH family protein.	0
NZ_QZDI01000009.1\|WP_014915685.1\|96056_96560_-\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	3.95052e-110
NZ_QZDI01000009.1\|WP_039467677.1\|105815_106154_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|177056	CHL00134, petF, ferredoxin; Validated.	4.02837e-32

>NZ_QZDI01000009.1|WP_119870941.1|99273_100257_+|zinc-transporter-ZntB
MESLAGKELQHSGAVHAYQLDGKGGVTPIGEQDVVNSEKPCWLHLDSTLPASVRWLNKTMLVPDSVRNALAGESARPRVTRLGEGTLITLRSINLNANARPDQLVAVRVFITDKLIISTRRRKVLAIDEILIDLKEGNGPTDSGSWLVSIAESLTDHTSEFIDDLHEKIIDLEEDLLEQKIPPRGELALIRKQLIVLRRYMTPQRDVFSRISGEKLPWMQDDDRRRMQEIADRLGRGLEDLDASIARTTVLSDEITALMTEAMNRRTYTMSLLAMVFLPTTFLTGLFGVNLGGIPGGDAPFGFFTFCLMLVILVGGVAWWLKRSKWL
>NZ_QZDI01000009.1|WP_119870940.1|97533_99150_+|oligopeptide-ABC-transporter-substrate-binding-protein-OppA
MHYGYSAFYAALMAAMTGNAVAAQVPAGTVLAEKQEIVRHIKDEPASLDPINAVGLPEAQVARDLFEGLVNQDAKGNLVPGVALRWQTTDNRTFIFTLRDNARWSNGEPVTAKDFVYSWHRLVTPENSSPFAWFARLAGIQNAEQILAGKLPVDQLGVTAVNDHTLKVQLSKPVPYFVSLTANFSLFPVHQATIEKFGNDWTKPGNLIGNGAFKLDQRVVNEKLVLTQNPYYWDNAHTRLTKVTFVPINQESNATKRYLSGDIDITESFPKNLYQKLLKDLPGQVYTPDQLGTYYYAFNTQRAPTNDVRVRKALSYAIDRKVIAEKVLGTGEKPAWHFTPDVTAGFKPTESLLQQYSQDELDAQAKALMAAAGYGPNNPLKLSLLYNTSESHQKIAIAVASMWKKTLGVDVRLSNQEWQTYIDSRNSGNFDVVRASWVGDYNEPSTFLSLLASHHSGNIARFKNANYDRVLDEAGNQTNPQALNADYNRAEQILMDEAPIAPIYQYTNGRLIKPWVKGYPITNPEDVAYSHMLYIEKH
>NZ_QZDI01000009.1|WP_039509627.1|96648_97368_-|murein-tripeptide-amidase-MpaA
MENPIIPLQARQQRGNLPSLGEPYGKSLLGAPLLYFPAELAPSESGLIIAGTHGDETAAVVALSCALRTLFSGQRRHHVILAVNPDGCQLGLRANANGVDLNRNFPASNWQPGKTVYRWNSAADERDVELSTGETAGSEPETKALCTLIEKLNPHWVVSFHEPLACIEDPHHSELGRWLAQRCELPLVSSIGYDTPGSFGSWCADRSLHCITAELPPVSADAASECYLKAMVALLSQQF
>NZ_QZDI01000009.1|WP_014915685.1|96056_96560_-|thiol-peroxidase
MSQNVHFQGNPVPVAGSFPAKGSKAPAFTLVAKDLSDTPLSNYAGKRKILNIFPSIDTGVCATSVRKFNQLGSELDNTVVLCISSDLPFAQSRFCGAEGLNNVVVLSTLRGGEFKENYGVAIADGALKGLTARAVVVLDENDNVLHSELVNEITTEPDYDAALAVLK
>NZ_QZDI01000009.1|WP_119870939.1|94914_95697_-|hypothetical-protein
MRILLLPLQITILFSGLAFSQSSEASFTFDPQKCHVPDPEGKAYVALRDTVFHISIDQLSILHDPVLRDGETLPLPPDPSEPLGCKGNPLSQQSLLFSRNFNGKLGDRPDWPKAWPLRKFQLFSSTPSHWGLHLDERHDKMCENRLKQTGLVPNMTTCLFEKNPARPDRYDVEEAGSWLIDPEVYSAPFNKRLAIFCMFAISGGTDCEVGYKIFPTVNLSYEFNPKEFPLTEVINFDKYLRAELEQAVVKDYPWKKSAPN
>NZ_QZDI01000009.1|WP_119870938.1|92773_94888_-|calcium-binding-protein
MAITYEYHYGNGGFILSEPQQKELRTLLDKQLTQSGTGAKSLAVPLYDKILSYLPVPSINVGEYFKVYTWLQGAREVNNDSSVYSVFIRNYTKIQYELRYGELNELELSILNNKIDEASNNIGFELVRNILNHNGLLPGLEGLGVLDGGEAARKVFQGDIYPEGDFTGWAGTMLFPFLGYDRFYEEWLLTTEEINAEIRTGSGIVDRIIKEHSGTYDLIAALQANQETIDSYNLLESIYAVIRSFENVDKSQQEIIEQTNSFISTTYALPADHPFLAGNKLPYDKVLFQTTNLGFSSGSQGDDDYKDFWIGDRANYLNYIVHAGMGNDGILGVPTTYPSLIPSSALIDGGPGFDSLSYHISKDIDDNGTPLKLSITFEEIASHFYNWRFSIDKSPSEGYSIYKGHDYAYSIEFLEGTNNSDTFIIKTLPTFNEIITVDLLGSKTGYGDTIDLSNINHGIDALISNGVISIPSSENGSITIMGVENIIGTSFNDILHGDNVNNIIVGGRGDNTIYGNGGEDKFVITQGVNTIKDADSNDKLYINLSAVNPLTNQKDLGLELKGGFIIRSSSPNPGGSATLQDGDTAIFYPAIPNPMNFSPALGGSGNMIDETLGDQFIVRYTLSGTTLFVSASFADLEPAEAIIENYDTGDLGLKFKSLVVPNYSNAAASHAGNMDQLVDQYVQLHSEMITDRFTLPTSSDLWYA
>NZ_QZDI01000009.1|WP_119870937.1|91404_92712_+|DNA-processing-protein-DprA
MNLSPTAQATLLLTCYFSKASAEDLKPLTNTEWGRFALWLKEKSLSPADLLVPDPAALLSGWHDSRVSVARIVQLLNRGHSLALAIEKWQRAGLWVVTRSDYDYPKRLKQRLKSDSPPVLFGCGNRALLNAKGLAVVGSRNANDTDLSFTHQVGRQAAADDIAIVSGGARGVDETAMLGAMNQGGVVIGVMADSLLKASTSTKWRKGLMEGRAVLVSPFYPEAGFSTGNAMARNKYIYCLAESALVVHSGKNGGTFNGAQENLKKGWVPLWIKPTDEASAGNAELVAAGGRWCDVDWRSLSIARLLDQVNPVSTPVAMGEQGSLFLREEAQTTLPEQPDSQKACAENTAATIEDSLTTAEGINVIKSESIDFYTLFLQELNRLAVEAVSLEELISFTALHKSQIAVWLQRAVDEGAIKKHNRPVRYQWIANSHPS
>NZ_QZDI01000009.1|WP_119870936.1|89269_91408_+|DEAD/DEAH-box-helicase
MDQEQARQLLQTALANPAAQFREGQWEAIDALVNRQQKLLVVQRTGWGKSSVYFISTKIFRDRGMGPTIIVSPLLALMRNQIDSAGRLGIVAETLNSTNKSEWENVTQRVLRNQVDCLLISPERLANDSFVETVLQPIADRIALMVIDEAHCISDWGHDFRPDYRRIVNILRQLPANTPVLGTTATANNRVVDDIQAQLGSIHIQRGPLIRKSLSLQTMKLPDQSSRLAWLAQAIPTLQGTGIVYVLTQRDAEIVSDWLNQSGRVLNRPDIVARPYYSGVSHDGFMTPTGKPDSDGYRQHLESLLLNNQIKVLVATTALGMGYDKPDLGFVIHYQMPGSVVAYYQQVGRAGRGIEQAVGILLSGAEDEEIHKFFRRSAFPAETQVTEILQALANADGLTLREIEEHTNLRHGQIEKVLKFLSVDSPAPVIKIDKKWRRTPIPYQMDRGRIAHLTGQREREWQEMQAYLAETDCKMTFLRRALDDNDPTPCGQCETCLGRPIIDLHANPFLAIIVDAFLGRSETVISPKTQIAANSFIQYGFHGNLPSNLRAQEGRVLSRWGESGCGKMVAIGKRIGHFNSELVRKMAVMIQHRWKPIPAPAWVCCVPSLHNSKLVPDFAQRLAKQLNLPFVDAIHKIRDNQPQKNQQNRFHQCRNLDGAFAVLQSVPEGPVLLVDDIIDSGWTLTVIAALLQQAGSGCVYPVALASSSVKDE
>NZ_QZDI01000009.1|WP_119870935.1|87648_89217_+|transcriptional-regulator-TyrR
MHLEVICEDRIGMVRELLDLLASRNIDLRGIEIASIGRIYLNFATLDFDDFRLLMTEIRRIDSVSDVRTVAFMPSEREHRALNALLESMPEPVFSLDMKGKLELFNPAALALFEQSAETISDLTIGSMIPGFNFASWLEKSSGVVAERVVIRGQDFLLEMTPVRLEDDAGKVATAGALVMLKSAARMGRQLQNLAVNDENEFDHIVAVSPKMRQVVEQARKLAMLDAPLLIVGDTGTGKDMLARACHLRGPRGKNPFLALNCAALPDDVMESELFGHAPGAYLNAQEGKKGFFEQANGGSVLLDEVGEMSAQMQTKLLRFLNDGTFRRVGEDHEVHVDVRVICATKKNLLELVQRGEFREDLYYRLNVLSLTLPPLRERPADIMPLAELFVARFADEQGIPRPKLAADVEHFLPQYGWPGNVRQLRNTIYRALTQLEGNELHMQDIDLPAFSIDAPQDETLLDGSLDDINKRFERSVLTRLYQSYPSTRKLAKRLGVSHTAIANKLREYGLSQRKSAGEEEE
>NZ_QZDI01000009.1|WP_119870934.1|85967_87512_+|M20/M25/M40-family-metallo-hydrolase
MIPGKKLTLAALSLSAAILCLPASAQLVLAPADAEHYAQNSFPEYLELLTLPNDAAVPADIQRNADWLEKAFQKRGFTTQQLANGDKPLVYAELGTPKADRKTILFYMHFDGQPVNPAEWQTPPWQPVLKEKDAAGKWQTLPESRLLKGDINPEWRLFARASADDKGPIVMFLAAMDAMKDKGVEPAVNIKVLLDSEEEKGSPGLTTVMADNLTLLKSDGMVIYDGAMPSSNRPGINFGNRGSIQIDMTVFGANAAAHSGGYGNVIPNPVQNLATLLASMKDADGKVTIPGYYDRVTLSESDKKQVAETAPPAGSLEKRFGVAQLEKVASNAAEAVQYPSLDILGIKAGDTGKKASNAIPSTATASVNIRTVPETPPDDMYALLRQYIASKGFHIIVGEAPTQAEREQYPHLISLSLTAYPSSAYAARTEIDSPLGHWAVATTTAPRGIAPEKNRMMGGTLPMSGAVSVLKVPYVIVPLVNADNNQHSFDENLRLGNYLEGIRTIVAMATTPLS
>NZ_QZDI01000009.1|WP_039467686.1|101138_102074_-|tRNA-2-thiocytidine(32)-synthetase-TtcA
MSENQQINQKQQYNLNKLQKRLRRNVGEAIADFNMIEDGDRIMVCLSGGKDSFTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHVLPQYLDSIGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFLNMFYGGKLKGMPPKLMSDDGKHIVIRPLAYCREKDIERFAEARQYPIIPCNLCGSQPNLQRQVIKDMLRDWDKRYPGRIETMFSAMQNVVPSHLADHALFDFKGIRHGSDVVDGGDLAFDREELPLQPVGWRPEDDDDAPSVTRLDVLEIK
>NZ_QZDI01000009.1|WP_119870943.1|102801_103956_+|hypothetical-protein
MSEYFSFLSSNEKIIHDCDHEINRKLGEFKTKRNILNVEDNQFIDCLTIKTWDVFYYYFRENRSLLDKNTLFNRKYLGERLLFSKEMFISDQLNFLHSLMRVVYELFFILNDPSQTPECVNIDVIEKIDHLTRDKNTVHSFLWIERVMPASMCRDIIQDSQFINVRDKITNGLEFIDNALKTHIDEINLCAGKSKSDLLDVIAKASEVNIEITDYERKLQEYKQEYNFVLLSKAFNNIRNTKKIEKLFAYIRFLIPVFVLVLIPIYLYITRIEHDVTQWRDVFIFLPLITLEVLAFYFMRLFYLEIKSVKSQILQIDIRLSLCEFIQDYVEKKESSDKSDHVWKSFESLVFSPIQANEDKIPAVLDGADAIADLAGKIMAKKSS
>NZ_QZDI01000009.1|WP_119872389.1|104301_104703_+|hypothetical-protein
MGIDVYGRAAVAVVRNHINGQNPREGWGREIAILTDLKSVREKGCPKSAFLGLCEAGYVNGISPKKYLLRGGKNKSYAIAGAEIALAGVENIYQPEDLWLMIKKSIPARPNKYNQQMHVVVALKDAGLLQKPD
>NZ_QZDI01000009.1|WP_158586003.1|105628_105781_+|hypothetical-protein
MEKESNERLKNEHDLEGINKKEEAVDKENHADDSNKRRPGCNRVKCFCAR
>NZ_QZDI01000009.1|WP_039467677.1|105815_106154_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MGYTYTIRDLTTGAEIQAPDDVYILDSLEKAGVNSPYSCRAGSCSSCAALLITGLVDQSDGTFLSDGQKVRFILTCSAYPQSDCTIRTGVEDLLEDEEKAHKVFFEDWQRWN
>NZ_QZDI01000009.1|WP_039467674.1|106529_106820_+|DUF333-domain-containing-protein
MKLLPWLCTAAALLLAGCSNHSENTAATQQNATQNDDTSAVVLLKSSSPVDVNCTLIGGTMAISRQLDGASVGACQLANGKRCSEQSLMNGSCPAG
>NZ_QZDI01000009.1|WP_014915622.1|106853_107846_-|2-hydroxyacid-dehydrogenase
MKLAIYSTKQYDRKYLEQVNQQFGYELEFFDFMLTSRTAKTAAGCQAVCIFVNDDGGREVLTELAALGIKTLALRCAGFNNVDLEAAKELGISVVRVPAYSPEAVAEHAVGLMLTLNRRIHRAYQRTRDANFSLEGLIGFNMHNRTAGIIGTGKIGIATMRILKGFGMRLLAFDPYPNPQALELGAEYVDLKTLYANADVISLHCPLTPENHHLLNQAAFAQMKNGVMIVNTSRGGLIDSQAAIDALKQQKIGALGMDVYENERDLFFADKSNDVIQDDIFRRLSACHNVLFTGHQAFLTEEALISISQTTLQNLKDISQNAPCANLVTS
>NZ_QZDI01000009.1|WP_014915621.1|107965_109519_-|PAS-domain-containing-protein
MRKNFPVSDIQYLLDEKAKLMSVTTTDSHITYANDDFIDASGYDFEEILHQPHNIVRHPDMPPQAFADMWATLKAGKIWTAVVKNRRKNGDYYWVKASTTPLMKEGKITGYMSVRTRVSQEEIRQTEALYHQMNENKLKNRRLFQGLLIYKGPLKLLSLFNVIPVRWRIRSYIFFFMLFALLFLLATLPVTTPLLVFVLALLAGAVITSELLVQHLAKPLEKILRQAINSASGQADNSFQLNRVDEVGMLLRAVNQSGMNFRTFVDDVNGKLAELRHACGEIASGNYTLSQRCEDTAQSLQSTASSMEELTATIQSNASASQLATRCANDANQAVDAGEKAVNQVTDTMAVMTRSSKEITDIISVLDNLAFQTNILALNAAVEAAHAGEQGKSFAVVAGEVRILAQRSAAAAKDIAAIIDATIANIHTSDKLVNHTSQSMHNILTQVQQVTQLVNQISLATQEQSQGLGQINSAVNNIDELTRQNTILATHSSSAINSLEQQISTMSEAVSVFSTSR
>NZ_QZDI01000009.1|WP_039288902.1|109884_111438_-|PAS-domain-containing-protein
MRNNTPVTDRQLPLSEKTRLMSVTTPESHITYANKDFIDVSGYTTDELMGQPHNLIRHPDMPPAAFADMWKTLRAGNIWTGIVKNRCKNGDHYWVKSSTTPLRKGGEIAGYMSVRTAASPEEIHQAEALYASANEGKLKYRTFHHGLLIYTGPLRILSLFKTMPLRWRIRSYFLLFSLIPLIAAYSLLAGTALASVLFPLLIACCFVSGELLVHHVARPIEQILAQAMRSAAGQADNLTQLNRVDEIGMLMRAVNQSGMNFRTFVDDVNTNLSELKNACNEIAQGNHTLAQCCEETEESLQQTAASVEQLTATIKSNAEASLQASLYTQDVNQAVNSGEQAVSQVSDTMETITRSSERITDIVSVMDNLAFQTNILAVNAAVEAAHAGEQGKSFAVVASEVRSLAQRSASSSSDISTIIDETLNSIRTGEQQVSHTHKSMSNILLQVQHVTNLMNEISLATQEQSQGLDQINEAVNRIDELTHQNTALASQSHSATDHLQQQISSMVQAASVFSLSR
>NZ_QZDI01000009.1|WP_119870945.1|111810_114402_+|YdbH-family-protein
MIKKRALSIAFLFAALLFLSWRALPQWLPRLANIWLPTEMSLTVNGTPGWQGGGLHSAGFSLMAGECTLVDVRNMTLRWHSWRWHVDIDAVTLNSDCLQHVPASSSTEPSAQLAQWQQRLPAADIQVKTFTLQPWQDYAGQVRLSSDGKRQQTLDYQGDQLAFKAELNEKRLTLHESMLATPAGFVRLQVSGEMELADTLDAAPVQGRLTGKLDSGQAPDPLSLLLDWHHQAGELVLNAANDETPLISLPWQLTDEVIQVTNGVWRWPYADQPLSGQVAITLQHWRQGLDATTINARLNMLTQGHNGKANAVLVLGPGNIGLLNSELRFQLTGQANLPALSLTATLPGMLQGSILNPELSLLSGALLRAWGTPAPQIYLEEARWPLAGVRISATGVNGRLQAIVKAREAYWGRFSLHLDGQAQDFWPDQGQWQWRYWGNGQLPPLKGEWDVAGRGQWQDTLIEVTQLSSGLDQLGYGIVTVHQPRLTITEPIRWQRARSGEHFQGALQLASERAHFSNGGYLPPSLLTLAMQGRSPDDFQLQGQLQAEDIGPVRLRGRWDGERLRGGAWWSTQPLKVFQPLLSPLLKMNIRAGQFYAQAAFSAARKEGFSAGGHWVVKNGGLWLQDGEVSGVNFVLPYRLKDQRWQLGVKQPVALRIDVLDNLFRMSNIRVDLQGFYPYSERRPLVMSQADMDVLDGHIGLSTLRWPQREPALFTVKSVDLSELMMVLKQKQFALSGRVSGTLPLNFNHPTTLIEGGRITNDGFLTLRLDNQLADELASKNLAGGAAIGWLRYLEIGRSYATLDLNNQGELTLTSQVQGKNPQLSAKRQVILNYRHQENIFQLWRSLRFGDNLRDTLEQQANE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage