CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_QXKA01000019	Listeria monocytogenes strain PNUSAL000361 DYZ36_19, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000021	Listeria monocytogenes strain PNUSAL000361 DYZ36_21, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000016	Listeria monocytogenes strain PNUSAL000361 DYZ36_16, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000022	Listeria monocytogenes strain PNUSAL000361 DYZ36_22, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000025	Listeria monocytogenes strain PNUSAL000361 DYZ36_25, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000001	Listeria monocytogenes strain PNUSAL000361 DYZ36_1, whole genome shotgun sequence	1 crisprs	NA	3	5	1	0
NZ_QXKA01000027	Listeria monocytogenes strain PNUSAL000361 DYZ36_27, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000017	Listeria monocytogenes strain PNUSAL000361 DYZ36_17, whole genome shotgun sequence	1 crisprs	NA	0	0	0	0
NZ_QXKA01000018	Listeria monocytogenes strain PNUSAL000361 DYZ36_18, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000023	Listeria monocytogenes strain PNUSAL000361 DYZ36_23, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000010	Listeria monocytogenes strain PNUSAL000361 DYZ36_10, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000009	Listeria monocytogenes strain PNUSAL000361 DYZ36_9, whole genome shotgun sequence	0 crisprs	cas3,DinG	0	0	0	0
NZ_QXKA01000013	Listeria monocytogenes strain PNUSAL000361 DYZ36_13, whole genome shotgun sequence	1 crisprs	cas5	0	0	0	1
NZ_QXKA01000012	Listeria monocytogenes strain PNUSAL000361 DYZ36_12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000003	Listeria monocytogenes strain PNUSAL000361 DYZ36_3, whole genome shotgun sequence	0 crisprs	DinG	0	0	0	0
NZ_QXKA01000020	Listeria monocytogenes strain PNUSAL000361 DYZ36_20, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000002	Listeria monocytogenes strain PNUSAL000361 DYZ36_2, whole genome shotgun sequence	0 crisprs	cas3,DEDDh	0	0	1	2
NZ_QXKA01000008	Listeria monocytogenes strain PNUSAL000361 DYZ36_8, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_QXKA01000006	Listeria monocytogenes strain PNUSAL000361 DYZ36_6, whole genome shotgun sequence	0 crisprs	WYL,casR	0	0	0	0
NZ_QXKA01000024	Listeria monocytogenes strain PNUSAL000361 DYZ36_24, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000026	Listeria monocytogenes strain PNUSAL000361 DYZ36_26, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000014	Listeria monocytogenes strain PNUSAL000361 DYZ36_14, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000015	Listeria monocytogenes strain PNUSAL000361 DYZ36_15, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000007	Listeria monocytogenes strain PNUSAL000361 DYZ36_7, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000004	Listeria monocytogenes strain PNUSAL000361 DYZ36_4, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_QXKA01000005	Listeria monocytogenes strain PNUSAL000361 DYZ36_5, whole genome shotgun sequence	0 crisprs	WYL,csa3	0	0	1	0
NZ_QXKA01000011	Listeria monocytogenes strain PNUSAL000361 DYZ36_11, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_QXKA01000013_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_QXKA01000013_1

195-305

Orphan

Consensus_repeat	Method
ATGGAAAAAAATATGCTACTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_QXKA01000013_1

>merge|NZ_QXKA01000013|1|195-305|CRISPRCasFinder
ATGGAAAAAAATGTGCTACTTGAATAATAATGGAAAAAAATATGCTACTTTATTAAAAAGATAAAAGCTTTTAAAGAATTCTTATCATGGAAAAAAATATGCTACTTTATT

>NZ_QXKA01000013|1|1|195-305|CRISPRCasFinder
ATGGAAAAAAATGTGCTACTTGAAT	AATAATGGAAAAAAATATGCTACTTTATTAAAAAGATAAAAGCTTTTAAAGAATTCTTATC
ATGGAAAAAAATATGCTACTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_QXKA01000013.1\|WP_120164784.1\|5947_7072_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375875
NZ_QXKA01000013.1\|WP_061396144.1\|2794_3670_-\|Rgg/GadR/MutR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_QXKA01000013.1\|WP_120164788.1\|12024_12684_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QXKA01000013.1\|WP_061385594.1\|10168_10516_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QXKA01000013.1\|WP_120164782.1\|4614_5322_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QXKA01000013.1\|WP_061396148.1\|11777_11993_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QXKA01000013.1\|WP_182925233.1\|7205_10118_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227268
NZ_QXKA01000013.1\|WP_120164780.1\|934_2584_+\|primase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378031
NZ_QXKA01000013.1\|WP_061665662.1\|11341_11761_+\|hypothetical-protein	unknown	unknown	unknown
NZ_QXKA01000013.1\|WP_120164786.1\|10534_11305_+\|hypothetical-protein	unknown	unknown	unknown

>NZ_QXKA01000013.1|WP_120164780.1|934_2584_+|primase-C-terminal-domain-containing-protein
MNSKLNEIDLYTYSAVISTVVKEGITAFRKKKSNGVLSIQQHFAELEATHGHRKGVQFVVRQKEDLQRKQGVRGFIVTSQEALINEANKITHWTPNVFRWGTYSDQQRKFIKGHSEDNLQQINTYVIDVDTNKVDVAALIMASMKILNQTPTFILKTNQGFQLYFVLENPVFISNANNFKSLRVAKRIATNLKHAFAEVLPGVDRGCNDFGFFRAPSTENIIFENLANQVSYTDLITWSKVYTQKHNRPGLKIVRERASFSVATDQEWFQKLVQLTNIRGRKGQYGRNNASFTIALACFSSGKSYAEAYDFLDEFNTNLQYPVAQKEIERVLKSAFSGKYKGASLEYIQGILENYQTENEIKHSTAFIFKKTGNRVFRKHRKARENRTYSHFEEWEADLEEYLQINILSGQTFVEKTQRELAEQTKIPLATLKKILKQSNRIISRVEGKGRSAKTLLSTVALVVESAIRHAIAKKHEQKEKYISFLATFTEAAQYITNKFMNDNHKTAAQNAILAALPVGDNTSRQMFLLLDQVYKKRSNMRIRRLLDS
>NZ_QXKA01000013.1|WP_061396144.1|2794_3670_-|Rgg/GadR/MutR-family-transcriptional-regulator
MLKTTGMTIKEIRVSKNIKQEEIYTNLISRNVLWQIENDKIRTNYEILKEILNRLNVSFNEFLYIQNNFKSTPIQELENRYNAIYTSIELEVLINLKKDMEAYLEFHPSNPLITDLVKCLSAIIAIEQEDNFAKATDIVTPIWDRISKQNDWYWEDIQIMSHIFFMFEQETALNICKELFNKLNNYRNFHNADRLEISTLLNISTMLLDKGQLKESEQYLNNCITLAEEKKYFIQWAYALGTKGILKTMTNQKEEGTKLMNQSVHILETINQPNLSKAIQADYNKYCANKN
>NZ_QXKA01000013.1|WP_120164782.1|4614_5322_+|hypothetical-protein
MQQSLKEGNYITSIKENISQIMSMLEKCQDEEVKAHLKKAKNNLETIASKEELQNNIRTLDICIANTEDPEKLASYTSSKRSLQESLGELNKIENGRESEENRLEREKLERLEALEYAMKEQKKYIKAKNKKFEPLPVTLKKINHPKKVFYKKIGREKWSLAQLLENAETIYTSEKKEYMNLHNGYVIELATMEVKFMTEIMYHIRNIRSQGIIIAERRGLHIYSVMYRKKAHAQ
>NZ_QXKA01000013.1|WP_120164784.1|5947_7072_+|hypothetical-protein
MDKKRKIIVGVSVAVGLVILGGGALGFHNYNVKAEEQEMALKQDQNKVKALQEEVNAFFTNTKKENIVPAVKKEDVNKLIEKEKQLPKNMDSTKENQTVTTDIDDLSKMVDARDKVASLLDDQKALVAGANIQLAQADIDRLKTKKPIFVAEQQKIIDEANNQQKTINEATTKVNNLFTTKQKTEVKKEVTRDAYNSAKEAVNKIKQKQSKEALTKNLDTVNKYLNEKENEAQKQAEAEKKAQNTATNDSETASSNEANESGSTASGDSGSSGKSSSGGNSSSSGSSGGNQSANGNGSSSKSSGGNNSTSKSSGGSSASKSSGGSSKSSGGSSSNKSKGTTGGSKPKTDYDTKKEGINGSTENQNGGTDTAWGW
>NZ_QXKA01000013.1|WP_182925233.1|7205_10118_+|hypothetical-protein
MFIKLRRKYKPLFAISIAIAVFLQAFFSPLITTLTAKAESTGYSLGFTNTGKSIISSTNPKPLLKSTGNSSGKWSAWYGGYETATSFITVDGEPAFCINPNLPYPINQEYAESIYKDEGVYNILYYGYPTNGTSEKNYVDTYVALNYYLGSFDSPAMRNDSGVKYLLDKAEAKTAPMGKFEIANKVQTAKWNANSNRQETGWYTTTWEGNANNKQTFSLPTGVKAVTRDGKEYSGTVKLDVDTDFKLVADARYDGTVSFDVATDIKKKASLKFTPKSGNVQSLMSAGGFSDPISATGIKATFEAQVGDLKIKKTGTDNRTLANAEYDVKDSNGKVVAHVKTGSDGTITAKDLLMGDYTVVETKAPAGYTIDKTPRKVTVKAAETTLLNVTNKAISFQVKVKKADTETGDTAQGDASLIGAKYGIYEDAAATKLLDEITIGQDLTATSKKILLGGESKTVYVKETKAPTGYNIDKTIYPVKVDQKDDVTELLLGNAASKDTVIKGGFELIKFANKPLLQSMLNDLPEGQKQALEGAEFTATLKSTGVVAQTQTTDLNGAASFTGLPYGTYVVSETKTPTGYKAVADFEVTISEEGQKFHYILEDKVIEAKVKIVKKDIETGKVIPLSGATFKVKDSEGNFITQHVNYPSDKDITEFVTAADGTLVLPETLVYGDYTLVEVKAPNGYLLNKEEIPFTVSAENDGQMITLDFSDAPAKGKVKGIKTKEVIDQEKSTQDKVVYKQVPAANIEFDVVAKENIVTPDGTIRAKQGEVVDHVKTNAEGAFESNKALYLGEYQLVETNLPGEYKELKPVAFSLQYQDDQTEIVWANVNVKNILKKGEAEISKKDVSGDKELPGATLHVKGKNVDLTWVSGTKAKKFTLPEGKYALTETIANKGYKLNTNTVYFEVKDGKVTKTTMHNEKLPTPVKKGFLPTTGDSSLDLMLYSFGTILVAVGIYLLVQNRRKRVNEDK
>NZ_QXKA01000013.1|WP_061385594.1|10168_10516_+|hypothetical-protein
MRNKPATIPFSSHLVLLNQKKLHHQTKAQIYMLVELPMICSEINIALGLNAWIQKEPNLQVILKTKNTRTVRPLYLRDIQDIKVLRKKDKENVYVLDLTEQQRSRLIQTLIEVAI
>NZ_QXKA01000013.1|WP_120164786.1|10534_11305_+|hypothetical-protein
MNQVFKVMTTAAIAVSLLSISGCGQSQSSASPSPTEETQKTEQKSNLQDSKYVAEHYLSYIYDGKTAQIEAITGEDSSEFKEEQKEFFYDRAGSVTPIEYPLIIEYDGFSEVYTPDKIKDEYATAMVNYFEQIDDYKIIDTEESEDGAELTIEVKGLAMNALANQANSYLDSLIGFDENLALSKYPSDTTQKANAVLQFWAMGELFQQGNKAPMLNDSITYTMYLEKDNQGNYQATEDTMSDVYSGSKLDSYEDGQ
>NZ_QXKA01000013.1|WP_061665662.1|11341_11761_+|hypothetical-protein
MEMENHRKRYKYPLKNVIQDLWDDDMGKILVYLLIFAFILLCGSVVTKINTPSDEEIRSLTQDYIEIQLGDDYKLEAWDVDINHQFGITSVEVSYIGVDSETGKKKEVMEEDISLSKIVEAIDKEKTKKRLEKEIKTAN
>NZ_QXKA01000013.1|WP_061396148.1|11777_11993_+|hypothetical-protein
MTNKRYALYVEEGKYLESWGEETQKAKLTNDFNEATTFTSFEEADKEANKLNSDVVMVVEVTHLKPTIICC
>NZ_QXKA01000013.1|WP_120164788.1|12024_12684_+|hypothetical-protein
MANRQSSDEARFLRLLSRTNMVIVCCIIIYPVIVFLFGESNFISKIPLFSIIPIDSIYLRIFVAIEATLTGICIAGRLTKLDDLKDILRDYDIQYNNRNIILKGPFTLKDAQLLISWISDNKNSLLVKSKDIEKAQDILAVFVENMAVEDLMVIQKYEIIAYFLDMGLILDDIFTRMNDIYEVVANSKRFTVTFKGMKITSITTEERGRIDDNFTKKEE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr_ID: NZ_QXKA01000013.1|WP_061665674.1|38788_39397_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_QXKA01000013.1|WP_061665674.1|38788_39397_+|hypothetical-protein

38788_39397_+

202 aa aa

AcrIIA16

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3631\|WP_061665674.1\|AcrIIA16\|II-A\|Verified\|Listeria-monocytogenes	1.0	1	1.0

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CRISPR-Cas detection and classification

Crispr_ID: NZ_QXKA01000001_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_QXKA01000001_1

592181-592862

Orphan

I-A

Consensus_repeat	Method
ATTTACATTTCACAATAAGTAACTAAAAC	PILER-CR
ATTTACATTTCACAATAAGTAACTAAAAC	CRISPRCasFinder
ATTTACATTTCACAATAAGTAACTAAAAC	CRT

10 spacers

The CRISPR arrays of NZ_QXKA01000001_1

>merge|NZ_QXKA01000001|1|592181-592862|PILER-CR,CRISPRCasFinder,CRT
ATTTACATTTCACAATAAGTAACTAAAACAAAAAATGGGAGGGCAAGTTGACCCAGCACCTGTTCTATTTACATTTCACAATAAGTAACTAAAACCGGAAAATTTAATTGTAGTTATTTTGTCTACACCGCTATTTACATTTCACAATAAGTAACTAAAACTGGAAGTAATGCTTGGGGCTACGATGGCATGGATAAATTTACATTTCACAATAAGTAACTAAAACTGAGCTTAATGTTACATCAAAGGAAGCTATTGAAATGATTTACATTTCACAATAAGTAACTAAAACGTATATCCAGACTCTCTTGCAGCACGAGAAACATTAATTTACATTTCACAATAAGTAACTAAAACGTCAATGAAGGTGACTTAAATATAAAAGGAACACCTTGATTTACATTTCACAATAAGTAACTAAAACTCATCTACCCAAGCAAGCAGTTTTTCTAGTTCAACATTTACATTTCACAATAAGTAACTAAAACTGTTACTAGTTTTCCGCCAATCATCAGCACAGGACCAGATTTACATTTCACAATAAGTAACTAAAACGAAGCTCTGTGAGTAAATATTTACCCGTTGATTTATTTACATTTCACAATAAGTAACTAAAACCTTGATGCAGAGGCTATTAAAGTTTTTGCATCCAAATTTACATTTCACAATAAGTAACTAAAAC

>NZ_QXKA01000001|1|1|592181-592862|PILER-CR
ATTTACATTTCACAATAAGTAACTAAAAC	AAAAAATGGGAGGGCAAGTTGACCCAGCACCTGTTCT
ATTTACATTTCACAATAAGTAACTAAAAC	CGGAAAATTTAATTGTAGTTATTTTGTCTACACCGCT
ATTTACATTTCACAATAAGTAACTAAAAC	TGGAAGTAATGCTTGGGGCTACGATGGCATGGATAA
ATTTACATTTCACAATAAGTAACTAAAAC	TGAGCTTAATGTTACATCAAAGGAAGCTATTGAAATG
ATTTACATTTCACAATAAGTAACTAAAAC	GTATATCCAGACTCTCTTGCAGCACGAGAAACATTA
ATTTACATTTCACAATAAGTAACTAAAAC	GTCAATGAAGGTGACTTAAATATAAAAGGAACACCTTG
ATTTACATTTCACAATAAGTAACTAAAAC	TCATCTACCCAAGCAAGCAGTTTTTCTAGTTCAAC
ATTTACATTTCACAATAAGTAACTAAAAC	TGTTACTAGTTTTCCGCCAATCATCAGCACAGGACCAG
ATTTACATTTCACAATAAGTAACTAAAAC	GAAGCTCTGTGAGTAAATATTTACCCGTTGATTT
ATTTACATTTCACAATAAGTAACTAAAAC	CTTGATGCAGAGGCTATTAAAGTTTTTGCATCCAA
ATTTACATTTCACAATAAGTAACTAAAAC

>NZ_QXKA01000001|1|1|592181-592862|CRISPRCasFinder
ATTTACATTTCACAATAAGTAACTAAAAC	AAAAAATGGGAGGGCAAGTTGACCCAGCACCTGTTCT
ATTTACATTTCACAATAAGTAACTAAAAC	CGGAAAATTTAATTGTAGTTATTTTGTCTACACCGCT
ATTTACATTTCACAATAAGTAACTAAAAC	TGGAAGTAATGCTTGGGGCTACGATGGCATGGATAA
ATTTACATTTCACAATAAGTAACTAAAAC	TGAGCTTAATGTTACATCAAAGGAAGCTATTGAAATG
ATTTACATTTCACAATAAGTAACTAAAAC	GTATATCCAGACTCTCTTGCAGCACGAGAAACATTA
ATTTACATTTCACAATAAGTAACTAAAAC	GTCAATGAAGGTGACTTAAATATAAAAGGAACACCTTG
ATTTACATTTCACAATAAGTAACTAAAAC	TCATCTACCCAAGCAAGCAGTTTTTCTAGTTCAAC
ATTTACATTTCACAATAAGTAACTAAAAC	TGTTACTAGTTTTCCGCCAATCATCAGCACAGGACCAG
ATTTACATTTCACAATAAGTAACTAAAAC	GAAGCTCTGTGAGTAAATATTTACCCGTTGATTT
ATTTACATTTCACAATAAGTAACTAAAAC	CTTGATGCAGAGGCTATTAAAGTTTTTGCATCCAA
ATTTACATTTCACAATAAGTAACTAAAAC

>NZ_QXKA01000001|1|1|592181-592862|CRT
ATTTACATTTCACAATAAGTAACTAAAAC	AAAAAATGGGAGGGCAAGTTGACCCAGCACCTGTTCT
ATTTACATTTCACAATAAGTAACTAAAAC	CGGAAAATTTAATTGTAGTTATTTTGTCTACACCGCT
ATTTACATTTCACAATAAGTAACTAAAAC	TGGAAGTAATGCTTGGGGCTACGATGGCATGGATAA
ATTTACATTTCACAATAAGTAACTAAAAC	TGAGCTTAATGTTACATCAAAGGAAGCTATTGAAATG
ATTTACATTTCACAATAAGTAACTAAAAC	GTATATCCAGACTCTCTTGCAGCACGAGAAACATTA
ATTTACATTTCACAATAAGTAACTAAAAC	GTCAATGAAGGTGACTTAAATATAAAAGGAACACCTTG
ATTTACATTTCACAATAAGTAACTAAAAC	TCATCTACCCAAGCAAGCAGTTTTTCTAGTTCAAC
ATTTACATTTCACAATAAGTAACTAAAAC	TGTTACTAGTTTTCCGCCAATCATCAGCACAGGACCAG
ATTTACATTTCACAATAAGTAACTAAAAC	GAAGCTCTGTGAGTAAATATTTACCCGTTGATTT
ATTTACATTTCACAATAAGTAACTAAAAC	CTTGATGCAGAGGCTATTAAAGTTTTTGCATCCAA
ATTTACATTTCACAATAAGTAACTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_QXKA01000001.1\|WP_033920547.1\|591210_591789_-\|hypothetical-protein	unknown	unknown	unknown
NZ_QXKA01000001.1\|WP_003733187.1\|589573_590032_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_QXKA01000001.1\|WP_003721303.1\|584411_585227_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_QXKA01000001.1\|WP_031665228.1\|585347_586778_+\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_QXKA01000001.1\|WP_003721291.1\|596812_597463_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_QXKA01000001.1\|WP_003721294.1\|594174_595446_-\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_QXKA01000001.1\|WP_003727295.1\|582200_583616_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_QXKA01000001.1\|WP_003733190.1\|593099_594035_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_QXKA01000001.1\|WP_120164525.1\|586824_587256_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_QXKA01000001.1\|WP_009924745.1\|597473_597872_-\|hypothetical-protein	unknown	unknown	unknown
NZ_QXKA01000001.1\|WP_003733194.1\|601158_601809_-\|transaldolase	unknown	unknown	gnl\|CDD\|223254
NZ_QXKA01000001.1\|WP_003721298.1\|590038_590398_+\|Lin0512-family-protein	unknown	unknown	gnl\|CDD\|131113
NZ_QXKA01000001.1\|WP_003733191.1\|597888_598356_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_QXKA01000001.1\|WP_003721287.1\|598989_601050_-\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_QXKA01000001.1\|WP_003721297.1\|590422_591103_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_QXKA01000001.1\|WP_003721293.1\|595460_595754_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_QXKA01000001.1\|WP_003733192.1\|598383_598986_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
NZ_QXKA01000001.1\|WP_003727296.1\|583762_584131_+\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NZ_QXKA01000001.1\|WP_120164522.1\|587356_589192_-\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NZ_QXKA01000001.1\|WP_069007933.1\|595769_596816_-\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198

Protein	Function_ID	Function_description	E-value
NZ_QXKA01000001.1\|WP_003721291.1\|596812_597463_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	4.74405e-108
NZ_QXKA01000001.1\|WP_003733187.1\|589573_590032_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	1.03599e-12
NZ_QXKA01000001.1\|WP_003721303.1\|584411_585227_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NZ_QXKA01000001.1\|WP_031665228.1\|585347_586778_+\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	6.70557e-100
NZ_QXKA01000001.1\|WP_003721294.1\|594174_595446_-\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
NZ_QXKA01000001.1\|WP_003727295.1\|582200_583616_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.97112e-80
NZ_QXKA01000001.1\|WP_003733190.1\|593099_594035_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	1.26262e-153
NZ_QXKA01000001.1\|WP_120164525.1\|586824_587256_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	1.21548e-26
NZ_QXKA01000001.1\|WP_003733194.1\|601158_601809_-\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	1.91243e-61
NZ_QXKA01000001.1\|WP_003721298.1\|590038_590398_+\|Lin0512-family-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	5.62162e-67
NZ_QXKA01000001.1\|WP_003733191.1\|597888_598356_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	2.76446e-37
NZ_QXKA01000001.1\|WP_003721287.1\|598989_601050_-\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	2.1337e-80
NZ_QXKA01000001.1\|WP_003721297.1\|590422_591103_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	7.71833e-60
NZ_QXKA01000001.1\|WP_003721293.1\|595460_595754_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
NZ_QXKA01000001.1\|WP_003733192.1\|598383_598986_-\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	1.15952e-75
NZ_QXKA01000001.1\|WP_003727296.1\|583762_584131_+\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	2.33548e-41
NZ_QXKA01000001.1\|WP_120164522.1\|587356_589192_-\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	2.03017e-119
NZ_QXKA01000001.1\|WP_069007933.1\|595769_596816_-\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0

>NZ_QXKA01000001.1|WP_033920547.1|591210_591789_-|hypothetical-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTITIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFTILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>NZ_QXKA01000001.1|WP_003721297.1|590422_591103_-|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLFFPESLNVFHWHQDTFALPTGSTRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
>NZ_QXKA01000001.1|WP_003721298.1|590038_590398_+|Lin0512-family-protein
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>NZ_QXKA01000001.1|WP_003733187.1|589573_590032_+|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTAAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NZ_QXKA01000001.1|WP_120164522.1|587356_589192_-|lmo0514-family-class-1-internalin
MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSINNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSARLSITEDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDATSEEQFLKDVHAETDDGTDVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVDPVPPTPEIKPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>NZ_QXKA01000001.1|WP_120164525.1|586824_587256_-|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQVDLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_QXKA01000001.1|WP_031665228.1|585347_586778_+|CapA-family-protein
MKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPLKKTSPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_QXKA01000001.1|WP_003721303.1|584411_585227_+|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_QXKA01000001.1|WP_003727296.1|583762_584131_+|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGFAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVAVLLV
>NZ_QXKA01000001.1|WP_003727295.1|582200_583616_-|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK
>NZ_QXKA01000001.1|WP_003733190.1|593099_594035_-|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSNIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NZ_QXKA01000001.1|WP_003721294.1|594174_595446_-|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>NZ_QXKA01000001.1|WP_003721293.1|595460_595754_-|PTS-sugar-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>NZ_QXKA01000001.1|WP_069007933.1|595769_596816_-|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYVDVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>NZ_QXKA01000001.1|WP_003721291.1|596812_597463_-|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
>NZ_QXKA01000001.1|WP_009924745.1|597473_597872_-|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMFVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>NZ_QXKA01000001.1|WP_003733191.1|597888_598356_-|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQNKEKLLAEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>NZ_QXKA01000001.1|WP_003733192.1|598383_598986_-|SIS-domain-containing-protein
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>NZ_QXKA01000001.1|WP_003721287.1|598989_601050_-|BglG-family-transcription-antiterminator
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADINDSNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>NZ_QXKA01000001.1|WP_003733194.1|601158_601809_-|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRILELTDKQVFVQTVGFTYEEILADARMLLTMFGKDKIAIKIPAHEAGTNVIDTLKKEDKTIQILGTAIYSADQAITAALVGADFVAPYVNRMSAANIDPFKEISQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_QXKA01000001_1	1.6\|592538\|38\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592538-592575	38	NZ_QXKA01000011.1	42390-42427	0	1.0
NZ_QXKA01000001_1	1.9\|592736\|34\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592736-592769	34	NZ_QXKA01000002.1	117693-117726	0	1.0
NZ_QXKA01000001_1	1.10\|592799\|35\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592799-592833	35	NZ_QXKA01000002.1	140256-140290	1	0.971

1. spacer 1.6|592538|38|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to position: 42390-42427, mismatch: 0, identity: 1.0

gtcaatgaaggtgacttaaatataaaaggaacaccttg	CRISPR spacer
gtcaatgaaggtgacttaaatataaaaggaacaccttg	Protospacer
**************************************

2. spacer 1.9|592736|34|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to position: 117693-117726, mismatch: 0, identity: 1.0

gaagctctgtgagtaaatatttacccgttgattt	CRISPR spacer
gaagctctgtgagtaaatatttacccgttgattt	Protospacer
**********************************

3. spacer 1.10|592799|35|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to position: 140256-140290, mismatch: 1, identity: 0.971

cttgatgcagaggctattaaagtttttgcatccaa	CRISPR spacer
cttgatgcagaagctattaaagtttttgcatccaa	Protospacer
***********.***********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_QXKA01000001_1	1.7\|592605\|35\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592605-592639	35	NC_003216	Listeria phage A118, complete genome	34139-34173	0	1.0
NZ_QXKA01000001_1	1.7\|592605\|35\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592605-592639	35	AJ242593	Bacteriophage A118 complete genome	34139-34173	0	1.0
NZ_QXKA01000001_1	1.7\|592605\|35\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592605-592639	35	MH341452	Listeria phage PSU-VKH-LP040, complete genome	32598-32632	0	1.0
NZ_QXKA01000001_1	1.7\|592605\|35\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592605-592639	35	DQ003642	Listeria phage A006, complete genome	31434-31468	0	1.0
NZ_QXKA01000001_1	1.9\|592736\|34\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592736-592769	34	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	60292-60325	0	1.0
NZ_QXKA01000001_1	1.9\|592736\|34\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592736-592769	34	KJ094023	Listeria phage LP-101, complete genome	27168-27201	0	1.0
NZ_QXKA01000001_1	1.10\|592799\|35\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592799-592833	35	KJ094023	Listeria phage LP-101, complete genome	6873-6907	0	1.0
NZ_QXKA01000001_1	1.5\|592473\|36\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592473-592508	36	MH299806	Listeria phage LP-KV022, complete genome	93-128	1	0.972
NZ_QXKA01000001_1	1.5\|592473\|36\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592473-592508	36	JB137888	Sequence 7 from Patent WO2012159774	53552-53587	1	0.972
NZ_QXKA01000001_1	1.5\|592473\|36\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592473-592508	36	KJ094025	Listeria phage LP-032 contig 2, partial genome	42923-42958	1	0.972
NZ_QXKA01000001_1	1.5\|592473\|36\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592473-592508	36	MN114083	Listeria phage LP-013, complete genome	60238-60273	1	0.972
NZ_QXKA01000001_1	1.5\|592473\|36\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592473-592508	36	NC_021785	Listeria phage LP-110, complete genome	22939-22974	1	0.972
NZ_QXKA01000001_1	1.5\|592473\|36\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592473-592508	36	MN128593	Listeria phage LP-031, complete genome	60098-60133	1	0.972
NZ_QXKA01000001_1	1.5\|592473\|36\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592473-592508	36	NC_021787	Listeria phage LP-037, complete genome	16970-17005	1	0.972
NZ_QXKA01000001_1	1.5\|592473\|36\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592473-592508	36	MN904502	Listeria phage LP-018, complete genome	59862-59897	1	0.972
NZ_QXKA01000001_1	1.5\|592473\|36\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592473-592508	36	JX442241	Listeria phage P70, complete genome	93-128	1	0.972
NZ_QXKA01000001_1	1.5\|592473\|36\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592473-592508	36	KJ094020	Listeria phage LP-026, complete genome	44140-44175	1	0.972
NZ_QXKA01000001_1	1.5\|592473\|36\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592473-592508	36	KJ094021	Listeria phage LP-114, complete genome	50089-50124	1	0.972
NZ_QXKA01000001_1	1.5\|592473\|36\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592473-592508	36	MN114082	Listeria phage LP-010, complete genome	59207-59242	1	0.972
NZ_QXKA01000001_1	1.8\|592669\|38\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592669-592706	38	MH341451	Listeria phage PSU-VKH-LP019, complete genome	10625-10662	1	0.974
NZ_QXKA01000001_1	1.10\|592799\|35\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592799-592833	35	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	216400-216434	1	0.971
NZ_QXKA01000001_1	1.8\|592669\|38\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592669-592706	38	DQ003642	Listeria phage A006, complete genome	10641-10678	2	0.947
NZ_QXKA01000001_1	1.9\|592736\|34\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592736-592769	34	NC_021539	Listeria phage LP-030-2, complete genome	23033-23066	2	0.941
NZ_QXKA01000001_1	1.9\|592736\|34\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592736-592769	34	AJ312240	Bacteriophage PSA complete genome	22756-22789	2	0.941
NZ_QXKA01000001_1	1.7\|592605\|35\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592605-592639	35	KP399677	Listeria phage vB_LmoS_188, complete genome	31932-31966	4	0.886
NZ_QXKA01000001_1	1.7\|592605\|35\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592605-592639	35	KP399678	Listeria phage vB_LmoS_293, complete genome	33169-33203	4	0.886

1. spacer 1.7|592605|35|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

tcatctacccaagcaagcagtttttctagttcaac	CRISPR spacer
tcatctacccaagcaagcagtttttctagttcaac	Protospacer
***********************************

2. spacer 1.7|592605|35|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

tcatctacccaagcaagcagtttttctagttcaac	CRISPR spacer
tcatctacccaagcaagcagtttttctagttcaac	Protospacer
***********************************

3. spacer 1.7|592605|35|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 0, identity: 1.0

tcatctacccaagcaagcagtttttctagttcaac	CRISPR spacer
tcatctacccaagcaagcagtttttctagttcaac	Protospacer
***********************************

4. spacer 1.7|592605|35|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

tcatctacccaagcaagcagtttttctagttcaac	CRISPR spacer
tcatctacccaagcaagcagtttttctagttcaac	Protospacer
***********************************

5. spacer 1.9|592736|34|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 0, identity: 1.0

gaagctctgtgagtaaatatttacccgttgattt	CRISPR spacer
gaagctctgtgagtaaatatttacccgttgattt	Protospacer
**********************************

6. spacer 1.9|592736|34|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

gaagctctgtgagtaaatatttacccgttgattt	CRISPR spacer
gaagctctgtgagtaaatatttacccgttgattt	Protospacer
**********************************

7. spacer 1.10|592799|35|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

cttgatgcagaggctattaaagtttttgcatccaa	CRISPR spacer
cttgatgcagaggctattaaagtttttgcatccaa	Protospacer
***********************************

8. spacer 1.5|592473|36|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 1, identity: 0.972

gtatatccagactctcttgcagcacgagaaacatta	CRISPR spacer
gtatatccagactctcttgcagcacgagaaacgtta	Protospacer
********************************.***

9. spacer 1.5|592473|36|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 1, identity: 0.972

gtatatccagactctcttgcagcacgagaaacatta	CRISPR spacer
gtatatccagactctctcgcagcacgagaaacatta	Protospacer
*****************.******************

10. spacer 1.5|592473|36|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to KJ094025 (Listeria phage LP-032 contig 2, partial genome) position: , mismatch: 1, identity: 0.972

gtatatccagactctcttgcagcacgagaaacatta	CRISPR spacer
gtatatccagactctctcgcagcacgagaaacatta	Protospacer
*****************.******************

11. spacer 1.5|592473|36|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 1, identity: 0.972

gtatatccagactctcttgcagcacgagaaacatta	CRISPR spacer
gtatatccagactctcttgcagcacgagaaacgtta	Protospacer
********************************.***

12. spacer 1.5|592473|36|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 1, identity: 0.972

gtatatccagactctcttgcagcacgagaaacatta	CRISPR spacer
gtatatccagactctcttgcagcacgagaaacgtta	Protospacer
********************************.***

13. spacer 1.5|592473|36|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 1, identity: 0.972

gtatatccagactctcttgcagcacgagaaacatta	CRISPR spacer
gtatatccagactctcttgcagcacgagaaacgtta	Protospacer
********************************.***

14. spacer 1.5|592473|36|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 1, identity: 0.972

gtatatccagactctcttgcagcacgagaaacatta	CRISPR spacer
gtatatccagactctctcgcagcacgagaaacatta	Protospacer
*****************.******************

15. spacer 1.5|592473|36|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 1, identity: 0.972

gtatatccagactctcttgcagcacgagaaacatta	CRISPR spacer
gtatatccagactctctcgcagcacgagaaacatta	Protospacer
*****************.******************

16. spacer 1.5|592473|36|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 1, identity: 0.972

gtatatccagactctcttgcagcacgagaaacatta	CRISPR spacer
gtatatccagactctcttgcagcacgagaaacgtta	Protospacer
********************************.***

17. spacer 1.5|592473|36|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 1, identity: 0.972

gtatatccagactctcttgcagcacgagaaacatta	CRISPR spacer
gtatatccagactctctcgcagcacgagaaacatta	Protospacer
*****************.******************

18. spacer 1.5|592473|36|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 1, identity: 0.972

gtatatccagactctcttgcagcacgagaaacatta	CRISPR spacer
gtatatccagactctcttgcagcacgagaaacgtta	Protospacer
********************************.***

19. spacer 1.5|592473|36|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 1, identity: 0.972

gtatatccagactctcttgcagcacgagaaacatta	CRISPR spacer
gtatatccagactctcttgcagcacgagaaacgtta	Protospacer
********************************.***

20. spacer 1.8|592669|38|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 1, identity: 0.974

tgttactagttttccgccaatcatcagcacaggaccag	CRISPR spacer
tgatactagttttccgccaatcatcagcacaggaccag	Protospacer
** ***********************************

21. spacer 1.10|592799|35|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.971

cttgatgcagaggctattaaagtttttgcatccaa	CRISPR spacer
cttgatgcagaagctattaaagtttttgcatccaa	Protospacer
***********.***********************

22. spacer 1.8|592669|38|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 2, identity: 0.947

tgttactagttttccgccaatcatcagcacaggaccag	CRISPR spacer
tgatactagttttccgccaatcattagcacaggaccag	Protospacer
** *********************.*************

23. spacer 1.9|592736|34|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 2, identity: 0.941

gaagctctgtgagtaaatatttacccgttgattt	CRISPR spacer
gaagctctgtgagtaagtatttgcccgttgattt	Protospacer
****************.*****.***********

24. spacer 1.9|592736|34|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 2, identity: 0.941

gaagctctgtgagtaaatatttacccgttgattt	CRISPR spacer
gaagctctgtgagtaagtatttgcccgttgattt	Protospacer
****************.*****.***********

25. spacer 1.7|592605|35|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 4, identity: 0.886

tcatctacccaagcaagcagtttttctagttcaac	CRISPR spacer
tcatctacccaagcaagtagtttttcgagttcgat	Protospacer
*****************.******** *****.*.

26. spacer 1.7|592605|35|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 4, identity: 0.886

tcatctacccaagcaagcagtttttctagttcaac	CRISPR spacer
tcatctacccaagcaagtagtttttcgagttcgat	Protospacer
*****************.******** *****.*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4433 : 11855

Hokovirus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077955612.1\|4433_5990_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.0e-17	28.1
WP_003730540.1\|6118_6523_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_061111005.1\|6582_6891_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003727000.1\|6903_7728_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	9.7e-68	52.6
WP_003721509.1\|7739_9230_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_014930875.1\|9438_10452_-	glycosyltransferase	A0A1V0SAH6	Catovirus	6.0e-11	32.0
WP_014600722.1\|10466_11450_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	3.1e-12	35.3
WP_003721506.1\|11471_11855_-	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_QXKA01000017

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_QXKA01000017_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_QXKA01000017_1

3106-3284

Orphan

Consensus_repeat	Method
TTAAGCAGTTTTGATACGAGCTC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_QXKA01000017_1

>merge|NZ_QXKA01000017|1|3106-3284|CRISPRCasFinder
GTAAGCAAATTTGATACCAGCTCTGTTACTGCTATGCAGAAGATGTTTCAAGATTGTAAATCGCTTGAGAAACTGAATTTAAGCAGTTTTGATACGAGCTCAGTAACTCGCATGAATAGTATGTTTGAAGGATGTACTAGTCTTGAAGAGCTAGACTTAAGCAGTTTTGATACGAGTTC

>NZ_QXKA01000017|1|1|3106-3284|CRISPRCasFinder
GTAAGCAAATTTGATACCAGCTC	TGTTACTGCTATGCAGAAGATGTTTCAAGATTGTAAATCGCTTGAGAAACTGAAT
TTAAGCAGTTTTGATACGAGCTC	AGTAACTCGCATGAATAGTATGTTTGAAGGATGTACTAGTCTTGAAGAGCTAGAC
TTAAGCAGTTTTGATACGAGTTC

>NZ_QXKA01000017.1|WP_120164844.1|159_2154_+|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIALGNANVSIAQERDTTNKLPEEELGSLDTSNIIAEEVAQEKPAEVENLEEIPTTDELMQNPEVLEQPVADSDDPDLTVVNSGAYWTIYRNTVNKEYSLRMFGNVPSSKPSAWNSYLKYIKHIEIEEATLTGSFEAYFRDNVFTVLESVRIEQCNLSGVTSFRSAFEGQLALGKVIIRDNYYPETPFLTNIKRMFASCSKISELDVSGLNTSSVTDMEYVFAGPVVLEKLDVSHFDTSSVTNMRGMFAGCRSLEELDVSHFDTSSVTNMNYMFQYCELLEKLDVSHFDTSSVTNMHYMFGGCTSLEALDVSHFDTSSVTTMETMFAGCASLEALDISNFNTSSVTNMKTMFHGCTSLEELDLSNFDTSSVTKMNNIFENCTALKSLYLDNFTDAAIMTDMFKGTTSLTYLFVSHNLSTFTGLENTSWYDEKNWVQFATLSQLQTYHRKQSEPTGYRKGAFLSLTMDAMGGEFEDTEEQKVQSKISGEYWEEVIPVKEGHYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVVIPASISLNEASELKVEGINRGSKTLSVGLNRTATSISESNKLTLANTADTTVQCLAPLNWDGSENNPEKAILTLAPGSEITEGDAVMDIEAPENIQAGKYTGNLVFSINYE
>NZ_QXKA01000017.1|WP_120164849.1|4272_6354_+|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIAFGSANVSTAQERDTTNKLPEEELGSLDASNLIAEEVAQDKPAEVDNLEEIPTTDELMQNPEVLEQPVADSDDPDLTVVSSGDFWTLYYNSANDEYSMRMFGNVPSSKPTAWNSYLKSIKHIEIEEATLTGSFASYFRHNVFPVLESVRIEQCNLSGVTSFANAFEGEGESESPLEKVVIRDNYYPETPSLTSIRRMFTLCRKLSELDVSGLNTSSVTDMEFMFSNADSLKELDVSNFDTSSVTTMSYMFAACTSLEELDVSNFDTSSVTNMKYMLSGIHLKKLDVSNFDTSSVTNMYGMFAYCYNLEELDVSNFDTSSVNNMLHMFYVCNNLEELDLSNFDTSSVTNMFAMFAYCTSLKEIDVSNFDTSSVTTMSAMFFECSSIEELDLSNFDTSSVTDMASMFENSTALKSLYLDNFTDAASMTDMFKGTTSLTYLFASHNLSTFNRLENTSWYDEKNWVQFSNYAQLQTYHRKQSEPTGYRKGAFLSLTMDAMGGEFEDAEEQKVQNKVSGEYWEEVIPVKEGHYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVIIPASISLNEATELKVEGINRGSKTLSVGLNYGETTISESNKLTLSNTADATVQCLVPLSWGGSENNPENAILTLAPGSEITEGDAVMEIESPENIQAGKYTGNLVFSIKYE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_QXKA01000002

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

87311 : 192898

119

Listeria_phage(67.61%)

holin,tRNA,terminase,tail,capsid,portal,protease,integrase

attL 112996:113014|attR 155205:155223

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003736387.1\|87311_88364_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	2.1e-27	36.0
WP_003732769.1\|88363_90772_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_026749898.1\|90932_91634_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-33	35.8
WP_120164535.1\|91647_95058_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_003721623.1\|95155_95608_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_031644434.1\|95623_98824_+	MMPL family transporter	NA	NA	NA	NA
WP_003721625.1\|98930_99605_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	1.7e-49	47.7
WP_072215733.1\|99641_100568_-	ribonuclease HIII	NA	NA	NA	NA
WP_003740576.1\|100721_100985_+	cell division protein ZapA	NA	NA	NA	NA
WP_012951513.1\|100984_101527_+	CvpA family protein	NA	NA	NA	NA
WP_003723851.1\|101619_103332_+	DNA polymerase/3'-5' exonuclease PolX	A0A2H4UV14	Bodo_saltans_virus	5.1e-18	24.8
WP_010989713.1\|103354_105712_+	endonuclease MutS2	Q94M10	Lactobacillus_phage	1.0e-21	50.4
WP_003723853.1\|105792_106104_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	5.4e-19	39.6
WP_003732777.1\|106179_107991_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_120164536.1\|108179_109394_+	aspartate kinase	NA	NA	NA	NA
WP_003733801.1\|109449_109944_-	YslB family protein	NA	NA	NA	NA
WP_003723856.1\|110091_110892_+	glutamate racemase	NA	NA	NA	NA
WP_014601941.1\|110904_111651_+	ribonuclease PH	NA	NA	NA	NA
WP_009932644.1\|111654_112266_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_010989714.1\|112302_112827_+	metallophosphoesterase	NA	NA	NA	NA
112996:113014	attL	NA	NA	NA	NA
WP_120164537.1\|113112_114267_-\|integrase	site-specific integrase	A0A059T688	Listeria_phage	3.7e-214	97.9
WP_015987307.1\|114402_115017_-	hypothetical protein	A0A059T7Z1	Listeria_phage	2.0e-97	96.1
WP_120164538.1\|115067_115520_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	7.2e-81	95.3
WP_009928771.1\|115536_115860_-	helix-turn-helix transcriptional regulator	A0A059T6G1	Listeria_phage	1.7e-36	72.0
WP_041198282.1\|116131_116320_+	helix-turn-helix domain-containing protein	A0A1S7FYV9	Listeria_phage	2.6e-13	60.0
WP_009929535.1\|116841_117165_+	hypothetical protein	NA	NA	NA	NA
WP_009929536.1\|117179_117383_+	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	3.1e-28	100.0
WP_015987310.1\|117384_117627_+	hypothetical protein	A8ATD2	Listeria_phage	1.4e-43	100.0
WP_014929520.1\|117629_117815_+	hypothetical protein	A0A059T7Z3	Listeria_phage	2.6e-29	100.0
WP_003730998.1\|118049_118202_+	hypothetical protein	A0A059T7S2	Listeria_phage	2.9e-18	96.0
WP_165814091.1\|118335_118512_+	hypothetical protein	NA	NA	NA	NA
WP_120164539.1\|118508_118760_+	hypothetical protein	Q8W5X5	Listeria_phage	2.8e-34	91.6
WP_120164540.1\|118782_119697_+	DNA (cytosine-5-)-methyltransferase	D2IZY5	Enterococcus_phage	2.9e-97	55.3
WP_120164541.1\|119728_120328_+	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	2.0e-62	65.3
WP_031664908.1\|120330_120774_+	hypothetical protein	NA	NA	NA	NA
WP_182925229.1\|120770_120917_+	hypothetical protein	A8ATZ0	Listeria_phage	5.0e-20	97.9
WP_120164542.1\|120932_121289_+	hypothetical protein	D2IZL0	Enterococcus_phage	2.8e-24	52.9
WP_120164543.1\|121285_121879_+	pentapeptide repeat-containing protein	M4H0V1	Listeria_phage	6.8e-39	85.2
WP_070007393.1\|122173_122557_+	hypothetical protein	A0A0S2MYE6	Enterococcus_phage	1.0e-32	55.2
WP_053804903.1\|122671_123232_-	hypothetical protein	NA	NA	NA	NA
WP_009928024.1\|123335_123509_+	hypothetical protein	A0A059T5G3	Listeria_phage	8.9e-24	98.2
WP_120164545.1\|123505_123889_+	hypothetical protein	A0A059T6A2	Listeria_phage	1.7e-59	89.8
WP_009928021.1\|123890_124370_+	siphovirus Gp157 family protein	A0A059T803	Listeria_phage	2.6e-57	77.2
WP_031658794.1\|124388_125081_+	AAA family ATPase	A8ATF0	Listeria_phage	4.1e-120	94.3
WP_120164546.1\|125144_126401_+	DEAD/DEAH box helicase	Q8W5V9	Listeria_phage	3.1e-235	95.9
WP_009928019.1\|126425_126911_+	DUF669 domain-containing protein	A0A059T5G4	Listeria_phage	2.9e-88	100.0
WP_120164547.1\|126933_129276_+	DNA primase	A0A059T6A4	Listeria_phage	1.9e-145	42.9
WP_031646683.1\|129571_129892_+	VRR-NUC domain-containing protein	Q8W5V6	Listeria_phage	5.8e-53	97.2
WP_039389924.1\|129888_130158_+	hypothetical protein	W0GBM0	Listeria_phage	5.3e-15	73.6
WP_120164574.1\|130268_130799_+	DUF3310 domain-containing protein	A0A059T7T5	Listeria_phage	1.9e-77	78.4
WP_009928014.1\|130799_131225_+	DUF722 domain-containing protein	Q8W5V4	Listeria_phage	2.7e-69	93.6
WP_026747157.1\|132333_132660_+	hypothetical protein	A0A059T5G5	Listeria_phage	2.5e-51	94.4
WP_009931610.1\|132659_132974_+	HNH endonuclease	A8ATF8	Listeria_phage	5.0e-57	98.1
WP_031668694.1\|133022_133379_+\|terminase	P27 family phage terminase small subunit	A0A059T7Y1	Listeria_phage	1.0e-45	96.0
WP_120164549.1\|133375_135019_+\|terminase	terminase large subunit	A0A059T7Q8	Listeria_phage	0.0e+00	99.1
WP_026747161.1\|135028_135418_-	DUF2513 domain-containing protein	A0A2I7SCV0	Paenibacillus_phage	2.8e-17	37.2
WP_026747162.1\|135468_136599_+\|portal	phage portal protein	A0A059T6F0	Listeria_phage	9.8e-212	98.7
WP_009928004.1\|136595_137312_+\|protease	Clp protease ClpP	A0A1S5SFF8	Streptococcus_phage	5.5e-67	57.4
WP_026747163.1\|137338_138490_+\|capsid	phage major capsid protein	A0A059T678	Listeria_phage	8.2e-214	99.7
WP_182925230.1\|138496_138667_+	hypothetical protein	A0A059T7Y2	Listeria_phage	1.4e-21	98.2
WP_009934007.1\|138676_138976_+	hypothetical protein	A8ATA0	Listeria_phage	9.9e-47	98.0
WP_009934006.1\|138959_139325_+	hypothetical protein	A0A059T6F2	Listeria_phage	1.6e-62	96.7
WP_120164550.1\|139321_139723_+	hypothetical protein	A0A059T5F3	Listeria_phage	5.2e-67	98.5
WP_026749924.1\|139719_140103_+	hypothetical protein	A0A059T681	Listeria_phage	2.1e-65	96.9
WP_120164551.1\|140123_140711_+\|tail	phage tail protein	A0A059T7Y4	Listeria_phage	8.4e-106	97.9
WP_031641717.1\|140781_141114_+	hypothetical protein	A0A059T7R2	Listeria_phage	3.0e-52	98.2
WP_014930919.1\|141164_141314_+	hypothetical protein	A0A059T6F4	Listeria_phage	2.3e-20	100.0
WP_120164552.1\|141329_146252_+\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	98.5
WP_120164553.1\|146244_147894_+\|tail	phage tail family protein	A0A059T682	Listeria_phage	0.0e+00	99.3
WP_120164554.1\|147906_150201_+\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	0.0e+00	98.8
WP_069027764.1\|150190_151282_+	carbohydrate-binding protein CenC	A0A059T7R4	Listeria_phage	2.5e-188	91.5
WP_009928178.1\|151329_151773_+	hypothetical protein	A0A059T6F6	Listeria_phage	6.8e-76	100.0
WP_009928179.1\|151751_152168_+	hypothetical protein	A0A059T5F5	Listeria_phage	9.3e-43	99.3
WP_120164555.1\|152188_152455_+\|holin	phage holin	A0A059T684	Listeria_phage	4.0e-39	97.7
WP_069029464.1\|152454_153162_+	M15 family metallopeptidase	A8ATW4	Listeria_phage	5.0e-129	97.4
WP_053804924.1\|153277_154015_-	hypothetical protein	NA	NA	NA	NA
WP_014931684.1\|154083_154269_-	hypothetical protein	R4IBK5	Listeria_phage	9.2e-19	86.7
WP_053804925.1\|154705_154939_+	hypothetical protein	A8ATC5	Listeria_phage	9.8e-34	93.5
WP_045599352.1\|155586_156945_+	DUF1254 domain-containing protein	M1HNU9	Paramecium_bursaria_Chlorella_virus	1.9e-07	22.1
155205:155223	attR	NA	NA	NA	NA
WP_003729706.1\|156986_157580_-	YdeI/OmpD-associated family protein	NA	NA	NA	NA
WP_012581425.1\|157716_158124_-	VOC family protein	NA	NA	NA	NA
WP_031664862.1\|158288_158888_+	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	3.8e-29	40.5
WP_003723543.1\|158920_159181_-	hypothetical protein	NA	NA	NA	NA
WP_120164556.1\|159304_160717_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	8.3e-51	31.9
WP_003730329.1\|160741_161005_+	DUF3116 family protein	NA	NA	NA	NA
WP_031664861.1\|161170_161647_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
WP_003730327.1\|161683_161929_-	hypothetical protein	NA	NA	NA	NA
WP_012581422.1\|161925_163131_-	MFS transporter	NA	NA	NA	NA
WP_031664859.1\|163335_163995_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_003726053.1\|164034_164229_-	hypothetical protein	NA	NA	NA	NA
WP_003730323.1\|164295_165144_-	YitT family protein	NA	NA	NA	NA
WP_003723553.1\|165474_165612_-	hypothetical protein	NA	NA	NA	NA
WP_003732787.1\|165762_166476_+	trehalose operon repressor	NA	NA	NA	NA
WP_031664857.1\|166506_168153_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_023552381.1\|168171_169656_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA
WP_014601949.1\|169772_170234_+	NUDIX hydrolase	NA	NA	NA	NA
WP_003726717.1\|170272_170737_-	hypothetical protein	NA	NA	NA	NA
WP_014601950.1\|170925_171840_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_014601951.1\|171864_173112_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	4.2e-107	52.0
WP_014601952.1\|173095_173926_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-45	42.0
WP_031664854.1\|174073_175213_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003723563.1\|175293_175689_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|175839_176055_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010989719.1\|176173_176707_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003732795.1\|176724_177390_+	hypothetical protein	NA	NA	NA	NA
WP_003732796.1\|177651_178590_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|178704_179988_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|180172_181432_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_003723887.1\|181550_182117_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_003723888.1\|182151_182721_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003723889.1\|182822_183365_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003723890.1\|183374_184238_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_023548886.1\|184234_185020_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	3.0e-26	39.2
WP_120164557.1\|185153_186014_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	1.2e-39	43.2
WP_009924617.1\|186284_188363_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	1.4e-107	37.7
WP_031664850.1\|188425_189730_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_009911635.1\|190012_190915_+	tyrosine recombinase XerC	A0A1B1IQT7	uncultured_Mediterranean_phage	8.0e-23	28.0
WP_003724001.1\|190935_191475_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_031645070.1\|191488_192898_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IBU3	Erwinia_phage	1.8e-29	26.0

Anti-CRISPR protein detection

Acr_ID: NZ_QXKA01000002.1|WP_003726053.1|164034_164229_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_QXKA01000002.1|WP_003723553.1|165474_165612_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_QXKA01000002.1|WP_003726053.1|164034_164229_-|hypothetical-protein

164034_164229_-

64 aa aa

WHTH_GntR

Identity	Hit_domain_coverage
0.4	0.9090909090909091

87311-192898

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_QXKA01000001_1	Orphan	1.9\|592736\|34\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592736-592769	34	117726-117693	0
NZ_QXKA01000001_1	Orphan	1.10\|592799\|35\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592799-592833	35	140256-140290	1

1. spacer 1.9|592736|34|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to NZ_QXKA01000002 position: 117726-117693, mismatch: 0

gaagctctgtgagtaaatatttacccgttgattt	CRISPR spacer
gaagctctgtgagtaaatatttacccgttgattt	Protospacer
**********************************

2. spacer 1.10|592799|35|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to NZ_QXKA01000002 position: 140256-140290, mismatch: 1

cttgatgcagaggctattaaagtttttgcatccaa	CRISPR spacer
cttgatgcagaagctattaaagtttttgcatccaa	Protospacer
***********.***********************

NZ_QXKA01000002.1|WP_003723553.1|165474_165612_-|hypothetical-protein

165474_165612_-

45 aa aa

WHTH_GntR

Identity	Hit_domain_coverage
0.4	0.9090909090909091

87311-192898

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_QXKA01000001_1	Orphan	1.9\|592736\|34\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592736-592769	34	117726-117693	0
NZ_QXKA01000001_1	Orphan	1.10\|592799\|35\|NZ_QXKA01000001\|PILER-CR,CRISPRCasFinder,CRT	592799-592833	35	140256-140290	1

1. spacer 1.9|592736|34|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to NZ_QXKA01000002 position: 117726-117693, mismatch: 0

gaagctctgtgagtaaatatttacccgttgattt	CRISPR spacer
gaagctctgtgagtaaatatttacccgttgattt	Protospacer
**********************************

2. spacer 1.10|592799|35|NZ_QXKA01000001|PILER-CR,CRISPRCasFinder,CRT matches to NZ_QXKA01000002 position: 140256-140290, mismatch: 1

cttgatgcagaggctattaaagtttttgcatccaa	CRISPR spacer
cttgatgcagaagctattaaagtttttgcatccaa	Protospacer
***********.***********************

5. NZ_QXKA01000005

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

73203 : 81047

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722604.1\|73203_74175_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003722605.1\|74182_75151_-	YvcK family protein	A1IMD5	Streptococcus_phage	6.7e-68	43.3
WP_003722606.1\|75152_76028_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_031645160.1\|76135_77866_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	3.3e-174	53.3
WP_003734087.1\|77907_78969_-	galactose mutarotase	NA	NA	NA	NA
WP_014601137.1\|78985_79969_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.2e-51	38.1
WP_003722610.1\|80087_81047_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_QXKA01000011

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

14804 : 25531

Listeria_phage(40.0%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031665468.1\|14804_15533_-	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGH1	Paenibacillus_phage	1.3e-34	43.0
WP_003721755.1\|15513_15936_-\|holin	holin family protein	Q2I8E7	Bacillus_phage	1.1e-27	46.3
WP_003732226.1\|15954_16491_-	hypothetical protein	NA	NA	NA	NA
WP_009931691.1\|16487_16967_-	hypothetical protein	NA	NA	NA	NA
WP_009931689.1\|16981_17557_-	hypothetical protein	NA	NA	NA	NA
WP_003721751.1\|17571_17871_-	hypothetical protein	NA	NA	NA	NA
WP_033921026.1\|17860_18997_-\|tail	phage tail protein	A0A0B5D0G3	Listeria_phage	7.7e-47	33.8
WP_003734720.1\|19006_19825_-\|tail	phage tail family protein	Q9T1A6	Listeria_phage	5.7e-44	35.5
WP_120164762.1\|19821_21690_-	hypothetical protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_110109762.1\|21676_22081_-	phenylalanine racemase	A0A097PAX1	Streptococcus_pyogenes_phage	2.4e-19	44.4
WP_003721745.1\|22122_22425_-	hypothetical protein	NA	NA	NA	NA
WP_003721744.1\|22472_22985_-\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_045598082.1\|22997_23387_-	DUF5072 family protein	NA	NA	NA	NA
WP_003735200.1\|23664_24081_-	hypothetical protein	NA	NA	NA	NA
WP_003732219.1\|24092_24521_-	hypothetical protein	A8ATZ8	Listeria_phage	3.0e-12	45.7
WP_003721740.1\|24737_25073_+	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003721739.1\|25078_25531_+	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_QXKA01000008

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

90092 : 98378

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722243.1\|90092_90659_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9
WP_009933235.1\|90655_91705_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.0e-61	43.2
WP_003722245.1\|91723_93151_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_031669014.1\|93135_95355_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.5e-160	41.4
WP_003733240.1\|95347_96031_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003722248.1\|96034_96280_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_052930180.1\|96291_97005_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	3.0e-41	38.3
WP_003729814.1\|97085_98378_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage