CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_JWNH01000006	Neisseria meningitidis strain Nm360527 Scaffold6, whole genome shotgun sequence	1 crisprs	NA	1	0	0	0
NZ_JWNH01000027	Neisseria meningitidis strain Nm360527 Scaffold27, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000004	Neisseria meningitidis strain Nm360527 Scaffold4, whole genome shotgun sequence	1 crisprs	csa3	0	0	1	2
NZ_JWNH01000058	Neisseria meningitidis strain Nm360527 Scaffold58, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000061	Neisseria meningitidis strain Nm360527 Scaffold61, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000034	Neisseria meningitidis strain Nm360527 Scaffold34, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000036	Neisseria meningitidis strain Nm360527 Scaffold36, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000007	Neisseria meningitidis strain Nm360527 Scaffold7, whole genome shotgun sequence	2 crisprs	DinG	0	2	0	0
NZ_JWNH01000019	Neisseria meningitidis strain Nm360527 Scaffold19, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000033	Neisseria meningitidis strain Nm360527 Scaffold33, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000026	Neisseria meningitidis strain Nm360527 Scaffold26, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000022	Neisseria meningitidis strain Nm360527 Scaffold22, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000039	Neisseria meningitidis strain Nm360527 Scaffold39, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	0	0
NZ_JWNH01000060	Neisseria meningitidis strain Nm360527 Scaffold60, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000067	Neisseria meningitidis strain Nm360527 Scaffold67, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000012	Neisseria meningitidis strain Nm360527 Scaffold12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000051	Neisseria meningitidis strain Nm360527 Scaffold51, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000045	Neisseria meningitidis strain Nm360527 Scaffold45, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000025	Neisseria meningitidis strain Nm360527 Scaffold25, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000031	Neisseria meningitidis strain Nm360527 Scaffold31, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000003	Neisseria meningitidis strain Nm360527 Scaffold3, whole genome shotgun sequence	1 crisprs	NA	0	0	1	0
NZ_JWNH01000044	Neisseria meningitidis strain Nm360527 Scaffold44, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000046	Neisseria meningitidis strain Nm360527 Scaffold46, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000062	Neisseria meningitidis strain Nm360527 Scaffold62, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000047	Neisseria meningitidis strain Nm360527 Scaffold47, whole genome shotgun sequence	1 crisprs	NA	1	0	0	0
NZ_JWNH01000009	Neisseria meningitidis strain Nm360527 Scaffold9, whole genome shotgun sequence	1 crisprs	DEDDh	0	0	0	0
NZ_JWNH01000056	Neisseria meningitidis strain Nm360527 Scaffold56, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000020	Neisseria meningitidis strain Nm360527 Scaffold20, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000013	Neisseria meningitidis strain Nm360527 Scaffold13, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000038	Neisseria meningitidis strain Nm360527 Scaffold38, whole genome shotgun sequence	0 crisprs	c2c4_V-U1	0	0	0	0
NZ_JWNH01000032	Neisseria meningitidis strain Nm360527 Scaffold32, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000073	Neisseria meningitidis strain Nm360527 Scaffold74, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000016	Neisseria meningitidis strain Nm360527 Scaffold16, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000005	Neisseria meningitidis strain Nm360527 Scaffold5, whole genome shotgun sequence	4 crisprs	NA	3	0	0	0
NZ_JWNH01000070	Neisseria meningitidis strain Nm360527 Scaffold70, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000077	Neisseria meningitidis strain Nm360527 Scaffold78, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000037	Neisseria meningitidis strain Nm360527 Scaffold37, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000042	Neisseria meningitidis strain Nm360527 Scaffold42, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000072	Neisseria meningitidis strain Nm360527 Scaffold72, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000055	Neisseria meningitidis strain Nm360527 Scaffold55, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000076	Neisseria meningitidis strain Nm360527 Scaffold77, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000017	Neisseria meningitidis strain Nm360527 Scaffold17, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000065	Neisseria meningitidis strain Nm360527 Scaffold65, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000071	Neisseria meningitidis strain Nm360527 Scaffold71, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000011	Neisseria meningitidis strain Nm360527 Scaffold11, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000029	Neisseria meningitidis strain Nm360527 Scaffold29, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000069	Neisseria meningitidis strain Nm360527 Scaffold69, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000063	Neisseria meningitidis strain Nm360527 Scaffold63, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000035	Neisseria meningitidis strain Nm360527 Scaffold35, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000074	Neisseria meningitidis strain Nm360527 Scaffold75, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000049	Neisseria meningitidis strain Nm360527 Scaffold49, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000021	Neisseria meningitidis strain Nm360527 Scaffold21, whole genome shotgun sequence	1 crisprs	NA	1	0	0	0
NZ_JWNH01000024	Neisseria meningitidis strain Nm360527 Scaffold24, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_JWNH01000048	Neisseria meningitidis strain Nm360527 Scaffold48, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000008	Neisseria meningitidis strain Nm360527 Scaffold8, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000059	Neisseria meningitidis strain Nm360527 Scaffold59, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000018	Neisseria meningitidis strain Nm360527 Scaffold18, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000066	Neisseria meningitidis strain Nm360527 Scaffold66, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000053	Neisseria meningitidis strain Nm360527 Scaffold53, whole genome shotgun sequence	2 crisprs	NA	1	0	0	0
NZ_JWNH01000075	Neisseria meningitidis strain Nm360527 Scaffold76, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000028	Neisseria meningitidis strain Nm360527 Scaffold28, whole genome shotgun sequence	1 crisprs	NA	1	0	0	0
NZ_JWNH01000057	Neisseria meningitidis strain Nm360527 Scaffold57, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000050	Neisseria meningitidis strain Nm360527 Scaffold50, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000023	Neisseria meningitidis strain Nm360527 Scaffold23, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000002	Neisseria meningitidis strain Nm360527 Scaffold2, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	0	0
NZ_JWNH01000015	Neisseria meningitidis strain Nm360527 Scaffold15, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000068	Neisseria meningitidis strain Nm360527 Scaffold68, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000052	Neisseria meningitidis strain Nm360527 Scaffold52, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000014	Neisseria meningitidis strain Nm360527 Scaffold14, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000040	Neisseria meningitidis strain Nm360527 Scaffold40, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000030	Neisseria meningitidis strain Nm360527 Scaffold30, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000041	Neisseria meningitidis strain Nm360527 Scaffold41, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_JWNH01000054	Neisseria meningitidis strain Nm360527 Scaffold54, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000064	Neisseria meningitidis strain Nm360527 Scaffold64, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000043	Neisseria meningitidis strain Nm360527 Scaffold43, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000010	Neisseria meningitidis strain Nm360527 Scaffold10, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_JWNH01000001	Neisseria meningitidis strain Nm360527 Scaffold1, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_JWNH01000003_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JWNH01000003_1

26842-26943

Orphan

I-E

Consensus_repeat	Method
GGATTCCCGCCTACGCGGGAATGACGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_JWNH01000003_1

>merge|NZ_JWNH01000003|1|26842-26943|CRISPRCasFinder
GGATTCCCGCCTACGCGGGAATGACGAGTCAGAAGTTACTCGAAACTTAAAAAATCGAAATCGAACGAACTGGATGGATTCCCGCCTGCGCGGGAATGACGA

>NZ_JWNH01000003|1|1|26842-26943|CRISPRCasFinder
GGATTCCCGCCTACGCGGGAATGACGA	GTCAGAAGTTACTCGAAACTTAAAAAATCGAAATCGAACGAACTGGAT
GGATTCCCGCCTGCGCGGGAATGACGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_JWNH01000003.1\|WP_002245624.1\|28897_29947_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_JWNH01000003.1\|WP_127281443.1\|19196_19751_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369706
NZ_JWNH01000003.1\|WP_002213235.1\|33627_34560_-\|VirK/YbjX-family-protein	unknown	unknown	gnl\|CDD\|225537
NZ_JWNH01000003.1\|WP_164732497.1\|21944_22892_+\|methyltransferase	unknown	unknown	gnl\|CDD\|236981
NZ_JWNH01000003.1\|WP_127281449.1\|30932_31943_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|181058
NZ_JWNH01000003.1\|WP_127281451.1\|34556_36002_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_JWNH01000003.1\|WP_002217006.1\|30170_30803_+\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|223337
NZ_JWNH01000003.1\|WP_002219137.1\|36064_36355_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_JWNH01000003.1\|WP_002222344.1\|36505_37159_+\|MarC-family-protein	unknown	unknown	gnl\|CDD\|225006
NZ_JWNH01000003.1\|WP_127281446.1\|23627_24047_+\|iron-sulfur-cluster-repair-protein-DnrN	unknown	unknown	gnl\|CDD\|225402
NZ_JWNH01000003.1\|WP_127281448.1\|25134_26490_+\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|234714
NZ_JWNH01000003.1\|WP_127281450.1\|32154_33585_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_JWNH01000003.1\|WP_127281447.1\|24116_24938_-\|NAD(+)-synthase	unknown	unknown	gnl\|CDD\|238309
NZ_JWNH01000003.1\|WP_002247584.1\|22943_23276_-\|thioredoxin-TrxA	unknown	unknown	gnl\|CDD\|200072
NZ_JWNH01000003.1\|WP_164727658.1\|29955_30111_-\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000003.1\|WP_127281444.1\|20228_21617_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_JWNH01000003.1\|WP_002220826.1\|18611_19112_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000003.1\|WP_127281442.1\|17014_18208_-\|acetylornithine/succinylornithine-family-transaminase	unknown	unknown	gnl\|CDD\|179933
NZ_JWNH01000003.1\|WP_127281441.1\|15663_16908_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_JWNH01000003.1\|WP_012221765.1\|27287_28829_+\|OFA-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340911

Protein	Function_ID	Function_description	E-value
NZ_JWNH01000003.1\|WP_002245624.1\|28897_29947_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	8.29592e-86
NZ_JWNH01000003.1\|WP_127281443.1\|19196_19751_+\|hypothetical-protein	gnl\|CDD\|369706	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	0.00317883
NZ_JWNH01000003.1\|WP_164732497.1\|21944_22892_+\|methyltransferase	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	5.16613e-166
NZ_JWNH01000003.1\|WP_127281451.1\|34556_36002_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_JWNH01000003.1\|WP_002217006.1\|30170_30803_+\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|223337	COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coenzyme metabolism].	7.56212e-116
NZ_JWNH01000003.1\|WP_002219137.1\|36064_36355_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	2.73539e-32
NZ_JWNH01000003.1\|WP_002222344.1\|36505_37159_+\|MarC-family-protein	gnl\|CDD\|225006	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion].	6.12101e-49
NZ_JWNH01000003.1\|WP_127281446.1\|23627_24047_+\|iron-sulfur-cluster-repair-protein-DnrN	gnl\|CDD\|225402	COG2846, COG2846, Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning].	7.37529e-71
NZ_JWNH01000003.1\|WP_127281448.1\|25134_26490_+\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|234714	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.	0
NZ_JWNH01000003.1\|WP_002213235.1\|33627_34560_-\|VirK/YbjX-family-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	9.42465e-130
NZ_JWNH01000003.1\|WP_127281447.1\|24116_24938_-\|NAD(+)-synthase	gnl\|CDD\|238309	cd00553, NAD_synthase, NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .	2.16932e-85
NZ_JWNH01000003.1\|WP_002247584.1\|22943_23276_-\|thioredoxin-TrxA	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	5.03928e-48
NZ_JWNH01000003.1\|WP_127281450.1\|32154_33585_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_JWNH01000003.1\|WP_127281444.1\|20228_21617_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	4.05127e-164
NZ_JWNH01000003.1\|WP_127281449.1\|30932_31943_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|181058	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated.	2.63317e-140
NZ_JWNH01000003.1\|WP_127281442.1\|17014_18208_-\|acetylornithine/succinylornithine-family-transaminase	gnl\|CDD\|179933	PRK05093, argD, acetylornithine/succinyldiaminopimelate transaminase.	0
NZ_JWNH01000003.1\|WP_127281441.1\|15663_16908_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_JWNH01000003.1\|WP_012221765.1\|27287_28829_+\|OFA-family-MFS-transporter	gnl\|CDD\|340911	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of Oxalobacter formigenes oxalate:formate antiporter (OFA or OxlT) and similar proteins. O. formigenes, a commensal found in the gut of animals and humans, plays an important role in clearing dietary oxalate from the intestinal tract, which is carried out by OFA/OxlT, an anion transporter that facilitates the exchange of divalent oxalate with monovalent formate, the product of oxalate decarboxylation. This exchange generates an electrochemical proton gradient and is the source of energy for ATP synthesis in this cell. The OFA-like subfamily belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.01143e-124

>NZ_JWNH01000003.1|WP_127281448.1|25134_26490_+|exodeoxyribonuclease-VII-large-subunit
MSDFFHSDVLSVSELNAFAKSILENHLAGLWIAGEVSNLTRAASGHYYFSLKDSRAQVRCAMFKGAAARLAKPLKEGDHIEVSGKISIYETRGEFQITVNEVRLKGLGQLYEAYERLKAQLQAEGAFAAERKKPLSARPQCIGIVTSLAAAALRDVVTTLKRRAPEIPVIVYPTAVQGAGSEFQIAQAIKTASQRAECDVLIVCRGGGSIEDLWAFNEEPVVRAIEACTVPVVSGVGHETDFTLADFVADVRAPTPTGAAELVSPNRQESLHRLAQAQGRLKTVLEQRYFDASQKLDWLARQIRHPRQKLDEQRASIGKLAQTLSYSMKQNLRAHTARFERQTQALQHYRPDVSVCKNNIVRLQTALPAAFSQLLTHRRQSLTAQAALLEAVSPQHILERGFSVVKNTRGQVIRNADVLKQGQKLHIIFADGETDVRVSKEQGQQDLFDCI
>NZ_JWNH01000003.1|WP_127281447.1|24116_24938_-|NAD(+)-synthase
MMRIFSTGGKMDTQAVITHIARWLDEYAARANAKGFVVGVSGGIDSAVVSTLAARTGRTTLLLDMPIRQHPGQLERARLHIRNLQRQYANVSAQTVDLTDTFQTFEQTVGIHQTAFDNQPLSLANAKSRLRMLTLYYYGQIHGLLVTGTGNKIEDFGVGFFTKYGDGGVDISPIADLTKTQVYRLAEALGVDEAIQKAPPTDGLWDTERTDEEQMGASYPELEWAMGVYGTRKPEDFEGRQREVLEIYTRLHRAMQHKINPIPVCRIPPELLG
>NZ_JWNH01000003.1|WP_127281446.1|23627_24047_+|iron-sulfur-cluster-repair-protein-DnrN
MLQRYHNVHRAQFEELVPLAQKVAQVHADTFPAEIAGLLADMQNELLMHMMKEERMLFPMINQGVGRGAAMPISVMMHEHEEHDRAIERLKELTDNFQPPEGACGSWTRLYALAKEMVEDLNDHIHLENDILFARVLDS
>NZ_JWNH01000003.1|WP_002247584.1|22943_23276_-|thioredoxin-TrxA
MSSELIVHTGDAAFEQDVLKSDLPVLLDFWAPWCGPCKMIAPILDDIAAEFEGRLKVVKINIDDNEATPSRFGVRGIPTLMVFKNGEVVATKVGALAKGQLTAFVEASIA
>NZ_JWNH01000003.1|WP_164732497.1|21944_22892_+|methyltransferase
MTDITPFANRLGKNIKHLMKWAKRNGIEAWRIYDRDIPQFPFAADVYGDRIHLQEYDTGWLMRPEEYEAWLAEVLEAVAFVTGFEPEQIRLKRRERQKGLQQYEKTGKAGDDFVITENGRKFWVNLDKYLDTGLFLDHRNTRKKVGETAAGKRFLNLFSYTGSFTVYAATGGAASSETVDLSNTYLDWAKRNFELNGIDMERHKIVRADVFQYLQAAYGEGRQFDLIVMDPPSFSNSKKMSDILDIQRDHKKLIDGAMKLLASDGILYFSNNLRSFVLDDSVSEQYAVKNISKQSVPEDFRNKKIHRCWEIRHKS
>NZ_JWNH01000003.1|WP_127281444.1|20228_21617_-|DEAD/DEAH-box-helicase
MSIKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRKRKSAGGKPKGKGGWGDRKSGGRRGDHKPGKEGFGGKTRGESFKKEGFKKDGFKKTGEGFKGKRKAGDSFAGRGERRYKDR
>NZ_JWNH01000003.1|WP_127281443.1|19196_19751_+|hypothetical-protein
MKKIIASALIATFALAACQDDTQARLEKQQKQIEALQQQLAQQADDTVYQLTPEAVKDTIPAEAQANGNNGQPVTGKDGQQYIYDQSTGSWLLQSLVGAAAGAFIGNALANKFTRAGNQDSPVARRARAAYHQSAHPNARTSRDLNTRSLRAKQQAAQAQRYRPTTRPPANYRRPAMRGFGRRR
>NZ_JWNH01000003.1|WP_002220826.1|18611_19112_+|hypothetical-protein
MNAMPQTAAQNETLHTCSIIVDDAQDFSPMLLDAGRDDTLISESMIPQIRTVAALIAAERHDFSRSSPAEFTDAADFFAARILVLGVRRFHLDVSLLQILKTANSRARRFAEKHRLFFTPAQAELSLNKHKNRRLLTVETEHEVENKGNPVANSLAFVRKLHTLPL
>NZ_JWNH01000003.1|WP_127281442.1|17014_18208_-|acetylornithine/succinylornithine-family-transaminase
MQNYLTPNFAFVPMIPERASGSRVWDTKGREYIDFSGGIAVNALGHCHPALVDALNAQMHKLWHISNIYTTRPAQELAQKLVANSFADKVFFCNSGAEANEAALKLARKYARDRFGGGKSEIVACINSFHGRTLFTVSVGGQPKYSKDYAPLPQGITHVPFNDIAALEAAVGEQTCAVIIEPIQGESGILPATAEYLQTARRLCNRHNALLILDEVQTGMGHTGRLFAYEHYSVVPDILSLAKALGCGFPIGAMLAEEEVAAAFQPGTHGSTFGGNPMACAVGSRAFDIINAPETLNHVREQGQKLQTALRSLGEQTGVFKQVRGMGLLLGCVLDETYRGHASEIVAAALKHGVMILVAGADVLRFAPSLLLNDEDMAEGLARLENALVEFAAANRP
>NZ_JWNH01000003.1|WP_127281441.1|15663_16908_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MSNENRTCSFCGKSKSHVEHLIEGENAFICDECVSNCIEILHEDGNDGTPPESAGGEPEESGKLPTPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDTTNILFICGGAFAGLEKVIRRRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEENALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEEGREPELVFES
>NZ_JWNH01000003.1|WP_012221765.1|27287_28829_+|OFA-family-MFS-transporter
MKFLDREASIAKPGFNRWLVPPAALAVHLAIGQIYAYSVFNAPLTKLIGITESAAGDWKLTTVGWIFSIALAMLGASAALFGTWMERVGPRKAIFAAACCFSLGFFVSAFGVRTHNLFLLYLGNGVIGGVGLGLGYIGPVSTLMKWFPDKPGMATGLAIMGFGGGAMLASPLSVSLMNAFSNAASVGVAETFAVLGLLYLALMMFGAFTIRVPADGWKPEGYTAPKTQNKLVSSNHVNVSQAMKTPQFWLLFWVLCLNVTAGIGVLGQASVMIQELFSETSVGRQSAVGAGAAAGFVSLLSLFNMGGRFLWSSVSDKIGRKNTYTIFFVLGSLLYFAVPSIGEGGSKALFIIGFCVIISMYGGGFAAIPAYLKDLFGTYQVGAIHGRILLAWSTAAVIGPVLVNYIRQSQIDSGIPAAQAYSVTMYIMAGLLIIGLLCNLAVKSVHEKHHEKDIKTAARSGNPDDETAISDAYLVGEKVSGGGISVWWRWALAVIPLAYGVVMVFVKALDLFS
>NZ_JWNH01000003.1|WP_002245624.1|28897_29947_-|rRNA-pseudouridine-synthase
MSKQPTSKRQWRDGAAPSAKKTAKPFKSKARPKDETGKTASQPYGQKASDGIKLQNTPKQRAAKAKKLVVRNPNQKIMEHARDLKERRSDLSRMEPERLQKVLAASGVGSRREMEEWINNGWVTVNGKTAQLGDKVTPDDHVTVKGSIIKLKWADRLPRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTSGELVQRFAHPSFEVEREYAVRVLGGLTGEQIRVLTEEGVMLEDGLAKVERIREQGGEGANKWYNVVIKEGRNREVRRIFESQGLTVSRLVRVGFGPIGLPNRLKRGQFYELNPAEVANIIKWADMLLPGERRRKKA
>NZ_JWNH01000003.1|WP_164727658.1|29955_30111_-|hypothetical-protein
MHKLCLATSRSDDFIRKTAASGTISNRPTEDGILSTRPAAHAAEEPPYQAS
>NZ_JWNH01000003.1|WP_002217006.1|30170_30803_+|pyridoxamine-5'-phosphate-oxidase
MDLHNIREDYSKRELSEGDCADNPIEQFERWLDEAVRAQVNEPTAVNVAAVDGRGRPNSRMVLLKEVNSEGFVFFTNYHSRKGRSLDAHPFAAMTFFWPELERQVRVEGRVERLAEKLSDEYFESRPYQSRLGAWASAQSEVIPNKAVLVAKAAAVGLKHPLHVPRPPHWGGYIVIPDLLEFWQGRPSRLHDRIQYRLLDGGWIRERLSP
>NZ_JWNH01000003.1|WP_127281449.1|30932_31943_-|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MNHTITLPDQTTFTADESETVLAAAARQNLNLPHSCKNGVCGQCKAELVSGDIQMGGHSEQALSEAEKAQGKILMCRTTAQSDISINIPGYKADALPVRTLPARIESIIFKHDVALLKLALPKAPPFAFYAGQYIDLLLPGNVSRSYSIANSPDQEGILELHIRRRENGVCSEMIFGSEPKVKEKGIVRVKGPLGSFTLQEDSGKPVILLATGTGYAPIRSILLDLIRQDSGRAVHFYWGARHQDDLYALEEAQGLACRLKNACFTPVLSRPGEGWQGRKGHVQDIAAQDHPDLSEYEVFACGSPAMTEQTKNLFVQQHKLPENLFFSDAFTPSAS
>NZ_JWNH01000003.1|WP_127281450.1|32154_33585_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MTWETVIGLEIHVQLNTKSKIFSGASTAFGAEPNAHAGVVECALPGVLPVMNREVVEKAIKLGLALDAKINRKNVFDRKNYFYPDLPKGYQISQLDLPIVEHGKLEIVVGDDVKTINVTRAHMEEDAGKSVHEGLNGATGIDLNRAGTPLLEVVSEPEMRSAAEAVAYAKALHSLVTWLNICDGNMAEGSFRVDANVSVRPKGQAEFGTRREIKNLNSFRFLEQAINYEAEAQIEILEDGGKVQQATMLFDPEKGETRVMRLKEDAQDYRYFPDPDLLPVIISDAQMQKAKAEMPELPKEMAARFVADYGVSEYDARLLTASRAQAAYFEEAAKESGQGKLTANWMNGELAAALNKEGMELADSPITAPRLAALVGKIADGTLSSKLAKKAFEAMWAEPEATIAEIIEKHGLQQMTDTGAVEAMVDEVLANNAKAVEQFKSGNEKALNAIVGQVMKASKGKANPAQVQELIKAKLA
>NZ_JWNH01000003.1|WP_002213235.1|33627_34560_-|VirK/YbjX-family-protein
MKQNRTFTFPDFRTVYSYAPLYRLQHLKYTLRKFFGKKEIYAFEQFVNASPIRQGLFLHCPQNAYPLLREFVDRRFNCKRRLDAMTADFLMAEKLFGTDILHQMEDYRFHLVLAHLSDGISLWLNRNDNCVEEGAWSLSLRDEAGNRLYMATFAFVGTHLLTASVQGPAGEEAKDTVRRITKQLHGLRPQQLMVTALQYFAAVLGLDGAMGIAQKHQVKLRWKLKKRVKMNYDAFWQEYGASLERDGYWHLPQTPARKDLTDIESKKRSMYRKRYEMLDNMVAEMKDGLKTEARGISDGIQTEKPLRRTA
>NZ_JWNH01000003.1|WP_127281451.1|34556_36002_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MTQYTLKQASVLLQSKQISAVELASAYLAAIAEKNPALNGYITIDQDKTLAEARAADERIAQGNASALTGVPVAYKDIFCQTGWRSACASKMLDNFISPYTATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAGPMAQTAEDCAILLNAMAGFDPKDSTSLEREKEDYTRDLNQPLKGVKIGLPKEYFGEGNSADVQTALQNTINLLKTQGAELVEVSLPQTKLSIPAYYVLASAEASTNLSRYDGVRYGHRAAQFGDLEEMYGKTRAEGFGSEVKRRIMIGTYVLSHGYYDAYYLKAQKLRRLVADDFQTAFARCDLILAPTAPTAAPKIGADASPVETYLSDIYTIAVNLAGLPALTLPAGFSGGGLPVGVQLVGNYFAEAKILGAAHQIQLNSDWHGKRPE
>NZ_JWNH01000003.1|WP_002219137.1|36064_36355_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MALTLADVDKIARLSRLHLTAEEKEKSLQELNDIFTMVEQMQTINTDGIEPMAHPHEAALRLREDEVTETDRAAEYQAGAPEVRNRLYIVPQVIEE
>NZ_JWNH01000003.1|WP_002222344.1|36505_37159_+|MarC-family-protein
MGLGMEIGKLIVAFLVLINPFSALSLYLDLTNGHSTKERRKVARTAAVAVFAVIAVFALIGGTLLKVLGISVGSFQVGGGILVLLIAISMMNGNDNPAKQNLGAQPETGQARPARNAGAIAVVPIAIPITIGPGGISTVIIYASAAKTYGDIALIIAAGLVVSAICYAILIVAGKVSRLLGATGLTILNRIMGMMLAAVSVEIIVSGLKTIFPQLAG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

102406 : 111617

Burkholderia_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_127281471.1\|102406_104686_+	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	7.0e-310	67.8
WP_002222381.1\|104743_105757_+	DNA (cytosine-5-)-methyltransferase	E5E3X6	Burkholderia_phage	8.0e-88	52.8
WP_002219186.1\|105749_106937_+	type II restriction endonuclease	E5E3X4	Burkholderia_phage	6.6e-33	38.9
WP_014575404.1\|106976_108131_+	ribonucleotide-diphosphate reductase subunit beta	W6AT53	Erwinia_phage	3.2e-165	74.8
WP_002217077.1\|108365_108656_+	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	7.5e-15	54.5
WP_002213385.1\|108696_108975_-	cell division protein FtsB	NA	NA	NA	NA
WP_002223714.1\|108988_110275_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	3.9e-148	62.5
WP_002223715.1\|110319_110760_-	DUF4149 domain-containing protein	NA	NA	NA	NA
WP_118801728.1\|110774_111617_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	2.5e-47	43.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_JWNH01000045

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_JWNH01000047

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CRISPR-Cas detection and classification

Crispr_ID: NZ_JWNH01000047_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JWNH01000047_1

8853-8953

Orphan

I-E

Consensus_repeat	Method
GGATTCCCGCCTGCGCGGGAATGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_JWNH01000047_1

>merge|NZ_JWNH01000047|1|8853-8953|CRISPRCasFinder
GGATTCCCGCCTGCGCGGGAATGACGGTTTAGAAGTTGCCCGAAACCTCAAAAAAAACCGAAACCGAACAAGCCGGATTCCCGCCTGCGCGGGAATGACGG

>NZ_JWNH01000047|1|1|8853-8953|CRISPRCasFinder
GGATTCCCGCCTGCGCGGGAATGACGG	TTTAGAAGTTGCCCGAAACCTCAAAAAAAACCGAAACCGAACAAGCC
GGATTCCCGCCTGCGCGGGAATGACGG

Protein	Function_ID	Function_description	E-value
NZ_JWNH01000047.1\|WP_002243933.1\|637_1429_-\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	5.8411e-99
NZ_JWNH01000047.1\|WP_127224039.1\|5408_7559_+\|TIGR01666-family-membrane-protein	gnl\|CDD\|130727	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are >700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. [Cell envelope, Other].	0
NZ_JWNH01000047.1\|WP_002215267.1\|74_491_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	7.73959e-49
NZ_JWNH01000047.1\|WP_002218483.1\|3896_5123_+\|PilT/PilU-family-type-4a-pilus-ATPase	gnl\|CDD\|227341	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_JWNH01000047.1\|WP_127213692.1\|1884_2571_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143497	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.	7.63294e-130
NZ_JWNH01000047.1\|WP_002218487.1\|2690_3734_+\|type-IV-pilus-twitching-motility-protein-PilT	gnl\|CDD\|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	0

>NZ_JWNH01000047.1|WP_153310287.1|8632_8791_+|hypothetical-protein
MAENLPFPSFIHLLFLEFAFTGRGGAPRTPGFGKPPDSAPAELLIEKLTSPF
>NZ_JWNH01000047.1|WP_127224039.1|5408_7559_+|TIGR01666-family-membrane-protein
MKTPLLKPLLITSLPVFASVFTAASIVWQLGEPKLAMPFVLGIIAGGLVDLDNRLTGRLKNIIATVALFTLSSLTAQSTLGTGLPFILAMTLMTFGFTILGAVGLKYRTFAFGALAVATYTTLTYTPETYWLTNPFMILCGTVLYSTAIILFQIILPHRPVQESVANAYDALGGYLEAKADFFDPDEAEWIGNRHIDLAMSNTGVITAFNQCRSALFYRLRGKHRHPRTAKMLRYYFAAQDIHERISSAHVDYQEMSEKFKNTDIIFRIHRLLEMQGQACRNTAQALRASKDYVYSKRLGRAIEGCRQSLRLLSDGNDSSDIRHLRRLLDNLGSVDQQFRQLRHSDSPAENDRMGDTRIAALETGSLKNTWQAIRPQLNLESGVFRHAVRLSLVVAAACTIVEALNLNLGYWILLTALFVCQPNYTATKSRVRQRIAGTVLGVIVGSLVPYFTPSVETKLWIVIASTTLFFMTRTYKYSFSTFFITIQALTSLSLAGLDVYAAMPVRIIDTIIGASLAWAAVSYLWPDWKYLTLERTAALAVCSNGAYLEKIAERLKSGETADDVEYRATRRRAHEHTAALSSTLSDMSSEPAKFADSLQPGFTLLKTGYALTGYISALGAYRSEMHEECSPDFTAQFHLAAEHTAHIFQHLPETEPDDFQTALDTLRGELDTLRTHSSGTQSHILLQQLQLIARQLEPYYRAYRQIPHRQPQNAA
>NZ_JWNH01000047.1|WP_002218483.1|3896_5123_+|PilT/PilU-family-type-4a-pilus-ATPase
MNTDNLHDILDEMVQVYSQKKQSRSETPAEIGAHFHPLLDRLCETAEAQNASDILISKGFPPSLKINSALTPQPQKALTGEETAAIAASTMNAEQSEIFRRDGEINYSVQSRSGTRYRANAYHSQGSAGLVLRRINHVIPQMQELGLPEKLKDLAVAPRGLLIIVGPTGSGKSTTMATMLEHRNKTLPSHIVTIEDPIEFIYKPRRCIFTQREIGVDTINWQTAVQNAMRQSPDVVCIGEVRSRESMEYAMQLAQTGHLCIFTLHANTAPQSLERILNFYPKEQHNQILIDIALNLTGIICQRLALKQDKTGRTAVVDLLINTPAIQDFILKGDLMNISKIMETAKTDGMQTMDQNLFELYRHGIISYEEALRQSVSANNLRLHIQLHKEGKTPELLYDRVNGLNLIS
>NZ_JWNH01000047.1|WP_002218487.1|2690_3734_+|type-IV-pilus-twitching-motility-protein-PilT
MQITDLLAFGAKNKASDLHLSSGISPMIRVHGDMRRINLPEMSAEEVGNMVTSVMNDHQRKIYQQNLEVDFSFELPNVARFRVNAFNIGRGPAAVFRTIPSTVLSLEELKAPSIFQKIAESPRGMVLVTGPTGSGKSTTLAAMINYINETQPAHILTIEDPIEFVHQSKKSLINQRELHQHTLSFANALRSALREDPDVILVGEMRDPETIGLALTAAETGHLVFGTLHTTGAAKTVDRIVDVFPAGEKEMVRSMLSESLTAVISQNLLKTHDGNGRVASHEILIANPAVRNLIRENKITQINSVLQTGQASGMQTMDQSLQSLVRQGLIAPEVARRRAQNSESMSF
>NZ_JWNH01000047.1|WP_127213692.1|1884_2571_-|YggS-family-pyridoxal-phosphate-dependent-enzyme
MTVLQERYCEVSDRIGKLVLQAGRDPHSVSLIAVGKTFPSDGIREVYASGQRDFGENYIQEWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPPLQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKRG
>NZ_JWNH01000047.1|WP_127281872.1|1477_1885_-|RNA-binding-protein
MEIRVIKYTAMAALLAFTVAGCRLAGWYECSSLTGWCKPRKPAAIDFWDIGGESPPSLGDYEIPLSDGNRSVRANEYESAQQSYFYRKIGKFEACGLDWRTRDGKPLIETFKQGGFDCLEKQGLRRNGLSERVRW
>NZ_JWNH01000047.1|WP_002243933.1|637_1429_-|pyrroline-5-carboxylate-reductase
MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAVKPQDMEAACKNIRTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWLDDEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQEMERQYQ
>NZ_JWNH01000047.1|WP_002215267.1|74_491_-|RNA-polymerase-binding-protein-DksA
MAKLTEQDILNWSGPEDDYMNDDHLAFFRELLVKMQDELIENASATTGHLQEHESAPDPADRATQEEEYALELRTRDRERKLLSKIQATIRNIDEGDYGFCADTGEPIGLKRLLARPTATLSVESQERRERMKKQFAD

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_JWNH01000047_1	1.1\|8880\|47\|NZ_JWNH01000047\|CRISPRCasFinder	8880-8926	47	NZ_JWNH01000021.1	638-684	2	0.957
NZ_JWNH01000047_1	1.1\|8880\|47\|NZ_JWNH01000047\|CRISPRCasFinder	8880-8926	47	NZ_JWNH01000006.1	46976-47022	1	0.979

1. spacer 1.1|8880|47|NZ_JWNH01000047|CRISPRCasFinder matches to position: 638-684, mismatch: 2, identity: 0.957

tttagaagttgcccgaaacctcaaaaaaaaccgaaaccgaacaagcc	CRISPR spacer
tttagaagttgcccgaaatctcaaaaaaaaccgaaaccgaacaaacc	Protospacer
******************.*************************.**

2. spacer 1.1|8880|47|NZ_JWNH01000047|CRISPRCasFinder matches to position: 46976-47022, mismatch: 1, identity: 0.979

tttagaagttgcccgaaacctcaaaaaaaaccgaaaccgaacaagcc	CRISPR spacer
tttagaagttgcccgaaacctcaaaaaaaactgaaaccgaacaagcc	Protospacer
*******************************.***************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_JWNH01000004

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CRISPR-Cas detection and classification

Crispr_ID: NZ_JWNH01000004_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JWNH01000004_1

58098-58220

Orphan

Consensus_repeat	Method
TTTTCGGGGGTGGTAGTACCCCCGTTTTCAGGGGGTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_JWNH01000004_1

>merge|NZ_JWNH01000004|1|58098-58220|CRISPRCasFinder
TTTTTGGGGGTGGTAGTACCCCCATTTTCTGGGGGTAGTACCCCCCAATTTTTGGGGGTAGTCCCATTTTTTGGGTGTACCCAATTTTTGGGGGTGGCAGTACCCCCATTTTCCGGGGGTGGT

>NZ_JWNH01000004|1|1|58098-58220|CRISPRCasFinder
TTTTTGGGGGTGGTAGTACCCCCATTTTCTGGGGGTAGT	ACCCCCCAATTTTTGGGGGTAGTCCCATTTTTTGGGTGTACCCAA
TTTTTGGGGGTGGCAGTACCCCCATTTTCCGGGGGTGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_JWNH01000004.1\|WP_014580652.1\|52735_53143_-\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000004.1\|WP_041267015.1\|52013_52514_-\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000004.1\|WP_014580650.1\|53429_54035_-\|DUF1367-family-protein	unknown	unknown	gnl\|CDD\|369209
NZ_JWNH01000004.1\|WP_127281511.1\|63084_63417_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000004.1\|WP_127214221.1\|54906_55050_-\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000004.1\|WP_164732506.1\|54225_54600_-\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|377564
NZ_JWNH01000004.1\|WP_164732503.1\|54590_54884_-\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000004.1\|WP_127281502.1\|55823_56516_-\|DNA-methyltransferase	unknown	unknown	unknown
NZ_JWNH01000004.1\|WP_127281506.1\|59418_60123_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_JWNH01000004.1\|WP_002255713.1\|58681_58882_-\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000004.1\|WP_127281509.1\|61070_61889_+\|DUF3037-domain-containing-protein	unknown	unknown	gnl\|CDD\|378608
NZ_JWNH01000004.1\|WP_041267007.1\|53139_53433_-\|DUF1364-domain-containing-protein	unknown	unknown	gnl\|CDD\|377777
NZ_JWNH01000004.1\|WP_127281512.1\|63569_63833_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000004.1\|WP_127281504.1\|56843_57620_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181180
NZ_JWNH01000004.1\|WP_127281501.1\|55404_55809_-\|DUF3310-domain-containing-protein	unknown	unknown	gnl\|CDD\|371705
NZ_JWNH01000004.1\|WP_021439752.1\|63834_64410_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238082
NZ_JWNH01000004.1\|WP_107971349.1\|59107_59305_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379262
NZ_JWNH01000004.1\|WP_127281505.1\|58857_59064_+\|KTSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|379296
NZ_JWNH01000004.1\|WP_127281508.1\|60375_61074_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000004.1\|WP_127281510.1\|61985_62768_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_JWNH01000004.1\|WP_127281501.1\|55404_55809_-\|DUF3310-domain-containing-protein	gnl\|CDD\|371705	pfam11753, DUF3310, Protein of unknwon function (DUF3310). This is a family of conserved bacteriophage proteins of unknown function.	4.63603e-05
NZ_JWNH01000004.1\|WP_014580650.1\|53429_54035_-\|DUF1367-family-protein	gnl\|CDD\|369209	pfam07105, DUF1367, Protein of unknown function (DUF1367). This family consists of several highly conserved, hypothetical phage proteins of around 200 residues in length. The function of this family is unknown. Some proteins are annotated as IrsA (intracellular response to stress).	7.50437e-66
NZ_JWNH01000004.1\|WP_107971349.1\|59107_59305_-\|hypothetical-protein	gnl\|CDD\|379262	pfam13560, HTH_31, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	0.000209191
NZ_JWNH01000004.1\|WP_127281505.1\|58857_59064_+\|KTSC-domain-containing-protein	gnl\|CDD\|379296	pfam13619, KTSC, KTSC domain. This short domain is named after Lysine tRNA synthetase C-terminal domain. It is found at the C-terminus of some Lysyl tRNA synthetases as well as a single domain in bacterial proteins. The domain is about 60 amino acids in length and contains a reasonably conserved YXY motif in the centre of the sequence. The function of this domain is unknown but it could be an RNA binding domain.	1.4499e-20
NZ_JWNH01000004.1\|WP_127281504.1\|56843_57620_-\|ATP-binding-protein	gnl\|CDD\|181180	PRK07952, PRK07952, DNA replication protein DnaC; Validated.	1.87674e-38
NZ_JWNH01000004.1\|WP_164732506.1\|54225_54600_-\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|377564	pfam05866, RusA, Endodeoxyribonuclease RusA. This family consists of several bacterial and phage Holliday junction resolvase (RusA) like proteins. The RusA protein of Escherichia coli is an endonuclease that can resolve Holliday intermediates and correct the defects in genetic recombination and DNA repair associated with inactivation of RuvAB or RuvC.	3.61701e-19
NZ_JWNH01000004.1\|WP_021439752.1\|63834_64410_+\|hypothetical-protein	gnl\|CDD\|238082	cd00140, beta_clamp, Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. .	9.06972e-08
NZ_JWNH01000004.1\|WP_127281506.1\|59418_60123_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	3.94715e-40
NZ_JWNH01000004.1\|WP_127281509.1\|61070_61889_+\|DUF3037-domain-containing-protein	gnl\|CDD\|378608	pfam11236, DUF3037, Protein of unknown function (DUF3037). This bacterial family of proteins has no known function.	4.38081e-30
NZ_JWNH01000004.1\|WP_041267007.1\|53139_53433_-\|DUF1364-domain-containing-protein	gnl\|CDD\|377777	pfam07102, DUF1364, Protein of unknown function (DUF1364). This family consists of several bacterial and phage proteins of around 95 residues in length. The function of this family is unknown.	1.29554e-35

>NZ_JWNH01000004.1|WP_127281504.1|56843_57620_-|ATP-binding-protein
MALKGASDFLRAFCSVQTERRQCAEHGEYAAKSVFHGVWTGCPVCRKLEAADEMAAYAETLRREAMRNGLEKRIGRSGIAQRFRNCRIENYTVSESIPGMARAKAAAAEYAENFADVLQTGRNMIFSGRRGTGKNHLACGIAHEVIAAGKTALVITVGDMLRTIKDSFGGGSETEAVGIFVKPDLLVLDEFGAGNLSETDGRILFSVINARYERLMPMLVLTNLTAEAFRENTDARIRDRLRDGGGKLIPFDWDSYRA
>NZ_JWNH01000004.1|WP_127281502.1|55823_56516_-|DNA-methyltransferase
MRILALFDDGNRSVKKALPDHDVVSVGIGNADIVMDLSDLKNVKKLVDMHKKEPFDLLMASPPCESWSFSTAGDNGNAYRDKDSLSLRTFQNWKKNPYVSIRRLVERNAPEIPAVYARYLRKGVNGDLTALFTAELVKALGIPFVIENPQSSMIFDKLAREGLSFVNNVACYAAYSDAFPLKRTGFASSLAMNLKQVKRAKFAFHAWKGNHHIVRSSIPEDLIKHIVSHF
>NZ_JWNH01000004.1|WP_127281501.1|55404_55809_-|DUF3310-domain-containing-protein
MTTPTPKTENPNRYCALDLSCNDFTQHLNFHLGSAFKYIFLHKEDGGREDLEKALWHLRRQRKDEPKFKKLKRKRYFKLSEKLDACGFDTDTKQTLAAILYAASAYDEDNISWAIAYVRTLLKKMPPETERGGI
>NZ_JWNH01000004.1|WP_127214221.1|54906_55050_-|hypothetical-protein
MDTLLSIIIALSFGGAAILAMWLLVEAADAVLRRKRDGKDDGLESDI
>NZ_JWNH01000004.1|WP_164732503.1|54590_54884_-|hypothetical-protein
MAATEKIEMRTCKTCGETKPLEGFHIANRRNPNRSYYKSCKTCRNKETNQKQAERRAAEKIEFSSRPASIRDAVALAHAACPILGIGLWTQSARECA
>NZ_JWNH01000004.1|WP_164732506.1|54225_54600_-|RusA-family-crossover-junction-endodeoxyribonuclease
MRVMRLILPYPVSANRYWRIWRNRAVRSAEATAYKSVVRRIAQEAGAMPSEGSVAVRLRLIPKANKDGSANKTVIDLDNALKVALDALQGVAYENDKQVRSIAAEYGSEPVAGGGLVVEIEELE
>NZ_JWNH01000004.1|WP_014580650.1|53429_54035_-|DUF1367-family-protein
MAVNVAVVKTPAGTLAPATAYDAELLRDYAAGRQLKVEIKQMGNRSYQHHKLFFGGLLPLAYEYWVPSGGLVTDGEQKLISGFARRLEAMHSSGGLFLEFADEFVRMVAAKRGERIGAVLQSMEAFRKWLTIEAGYFDVYETPNGYRKEAKSISFHSMGQEEFNRFYRDCFQVAWNMMLSSRFESEEAAERAAMEMMEMGG
>NZ_JWNH01000004.1|WP_041267007.1|53139_53433_-|DUF1364-domain-containing-protein
MSKITQSARGERCQIRFPGICNHDLETTVFAHYRLAGYCGTGIKPPDFMGAYACSRCHDLADGRLKADCAEGEIQTAFAEGVMRTLVLLHEKGLIKL
>NZ_JWNH01000004.1|WP_014580652.1|52735_53143_-|hypothetical-protein
MNQQEFEFMNDLARAFERRYRDTRSLNRCLSIEGRYMGEEVSPHKPEIGLRYGEDAMFLTLQAWAKVDAPQQEAVRISFGIGAKSQAAYEERLQAEIRRRGEQLLHSQTDLGLAAWYEAIRQAAGDDFDLLFEKV
>NZ_JWNH01000004.1|WP_041267015.1|52013_52514_-|hypothetical-protein
MSKAINKLNEKEKIRLLFAQREKFYRILENPEQGFTPPTALLKSGETCFLIDYVNMGEVVTESVRTYTGTRLKLGSTPVYLGGGKSVANEKQKNVAYGELVLTNFRLIFVGNMRSIDLPLDKINSVECFQSSIRISQSGKNKPIFFNTVFNPQLWKEAILVLSDKK
>NZ_JWNH01000004.1|WP_002255713.1|58681_58882_-|hypothetical-protein
MTRQDDGAFAVPFGQMDEAEIIAHFKRYGFTDELGHALELCADFLDLVRFAKRDGACSIVKNGAEV
>NZ_JWNH01000004.1|WP_127281505.1|58857_59064_+|KTSC-domain-containing-protein
MHHHPVLSSNLSSVAYENGILEIRFKNGSLYRYEGVPQTVYDELLHAPSKGRYLHSQIKPFYPYRHVW
>NZ_JWNH01000004.1|WP_107971349.1|59107_59305_-|hypothetical-protein
MSILKTPQEIIHDLKKTMSGHEIAKHVGCSPEFINKLANGERKNPRYQIVDKLRKIHQQNIGVLK
>NZ_JWNH01000004.1|WP_127281506.1|59418_60123_+|helix-turn-helix-transcriptional-regulator
MEELKEFKDRLRKARIEKNISQVELSRLTGESQSKIAALESGRNKKPTNTVQLAEILGVSAYWLETGKGEMHPSPAQNEIKDIHRPMLWSSNDPLPDDDYIFVPYLKESCFKGGAGAFEIPDYNGYRLPFGKSTLKRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLTVIGRVFWWSVLD
>NZ_JWNH01000004.1|WP_127281508.1|60375_61074_+|hypothetical-protein
MDRAEQGVTSPFICMAENGLEYFVKGLHATRASQINEWIGGNMAQALGLPVAPFELLEVGEELYEELPAKMKEIGKGICFGSLAQKGCALLEPADIPRIDTVMQRQIAAFDWFVRNEDRTIGNPNLLYRNCNNSLIVIDHNCAFDTGFNPNNFLQNHIFSSAFKQVLEDWVLQEEMELWLKSALPAYRKACDNLPPEWAWANEERDLPAAYNRSHTDETVRRIDNGTLWSIS
>NZ_JWNH01000004.1|WP_127281509.1|61070_61889_+|DUF3037-domain-containing-protein
MNQYAMRFAVIRFMPYVQTREFANIGIIITHPQSGYFDFKIEHRYSRLSRFFRHFDSSVYKAVTRAFAEELQRIGKLAAYSTPDQIRAMLDHLTRPREALIMAAQPGVTVAADREQELNRLFDYYVAHSFAKNQPEAELTRQIQAMLKPLQTAYPFKESTIGDPSGFHASIPLVQKTENGEIRKIIKPIYFGQKDPADIYYKSDKWIASIKRLRRGGYIDRSEILFAYESPERPDKAQEKALLDVLGDLKEQSIQLADNRNDGKIIRTFACG
>NZ_JWNH01000004.1|WP_127281510.1|61985_62768_-|hypothetical-protein
MKLRRLIMEMQLDKQTLTVVVRNSEPVELSVFAQSMMSLADDYESMCGSAGSHARLYIKEIRQGSIIAELAPLLPLAGTLFEGAGQILAYAKNFIEITDWLMGKGKEPAGVTDSQIRNIANIMQPAASDKNGSIEINVNDNNGSIVNNITYNYFAANTVQNQARRILGERAEASESGDYGQMVMYFVQAAPTKETNQAVIEGIYSRPVKILIPEHIKREMFSEPYPFEKYYIVDVSVQTARGKPRLYKVTRYHGVVDGDD
>NZ_JWNH01000004.1|WP_127281511.1|63084_63417_+|hypothetical-protein
MKYYGTAAYSSPDWGMGGYYAREDRRQAWDDWEVENRILHESDLIEIAKKSAREFIHNADGEPYAQKDWEMYLTEDASRVNKDTEAAMNYAIDDGDWFTLAENIGRLANS
>NZ_JWNH01000004.1|WP_127281512.1|63569_63833_+|hypothetical-protein
MKAGNIVFKLAVLLAVLAAGYAFGFAKGSKSHTAKEKPADIAVMRMALAEKQAQAAELDAQIWLEERHLNAEEEADYRWVHGDAEVK
>NZ_JWNH01000004.1|WP_021439752.1|63834_64410_+|hypothetical-protein
MQVFNIDKNLLKAAAYAAATDGLRPINGVYLDKDAGKIKSTDGYMYCVIDCEAIKKIPQSIMIPTDWIKYAIKKTNKDFPFVSIFFEDGEFSILSFKQKLFKTSFPNDKSVTNINPEDLKQVDIKNESLKLNIRDIKKLGKIQKALGLQFPMFYPVYLSSKINETEFKAFKFEFLNCQVYIMPLKPDTDYL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

24774 : 37819

Pseudomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_127281485.1\|24774_27825_-	tape measure protein	A0A0M3LS69	Mannheimia_phage	3.9e-61	31.7
WP_002212358.1\|27856_28006_-	hypothetical protein	NA	NA	NA	NA
WP_127281486.1\|28320_28503_-	hypothetical protein	NA	NA	NA	NA
WP_002231713.1\|28477_28816_-	hypothetical protein	NA	NA	NA	NA
WP_127281487.1\|28816_29359_-	TIGR02594 family protein	A0A2P1CA59	Pseudomonas_phage	1.7e-52	52.8
WP_127281488.1\|29400_29733_-	hypothetical protein	NA	NA	NA	NA
WP_127281489.1\|29733_30210_-	hypothetical protein	NA	NA	NA	NA
WP_002212365.1\|30275_30581_-	hypothetical protein	NA	NA	NA	NA
WP_127281490.1\|30697_35824_-	DUF1983 domain-containing protein	Q9FZU3	Neisseria_meningitidis_phage	1.6e-72	56.7
WP_118780263.1\|35897_36224_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_127281491.1\|36223_36502_+	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	4.3e-12	42.9
WP_025462425.1\|36529_36964_-	hypothetical protein	F4YXU4	Roseobacter_phage	1.5e-11	36.1
WP_127281492.1\|36964_37819_-	DUF2163 domain-containing protein	A0A1V0DY93	Dinoroseobacter_phage	1.1e-18	29.4

Anti-CRISPR protein detection

Acr_ID: NZ_JWNH01000004.1|WP_042743676.1|23771_24122_+|anti-CRISPR-protein-AcrIIC3

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Acr_ID: NZ_JWNH01000004.1|WP_101171527.1|24167_24539_+|anti-CRISPR-protein-AcrIIC2

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_JWNH01000004.1|WP_042743676.1|23771_24122_+|anti-CRISPR-protein-AcrIIC3

23771_24122_+

116 aa aa

AcrIIC3

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR0119\|WP_042743676.1\|AcrIIC3\|II-C\|Verified\|Neisseria-meningitidis	1.0	1	1.0

NZ_JWNH01000004.1_24531_24741_+

Protein_id	Hit_Aca_id	Identity	Query_coverage	Hit_coverage
NZ_JWNH01000004.1_24531_24741_+	AcrIIC2-Aca3\|WP_042743680.1	0.9565217391304348	1	1.0

NZ_JWNH01000004.1|WP_101171527.1|24167_24539_+|anti-CRISPR-protein-AcrIIC2

24167_24539_+

123 aa aa

NZ_JWNH01000004.1_24531_24741_+

Protein_id	Hit_Aca_id	Identity	Query_coverage	Hit_coverage
NZ_JWNH01000004.1_24531_24741_+	AcrIIC2-Aca3\|WP_042743680.1	0.9565217391304348	1	1.0

5. NZ_JWNH01000028

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CRISPR-Cas detection and classification

Crispr_ID: NZ_JWNH01000028_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JWNH01000028_1

20768-20851

Orphan

I-E

Consensus_repeat	Method
CTAGATTCCCGCTTTCGCGGGAATGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_JWNH01000028_1

>merge|NZ_JWNH01000028|1|20768-20851|CRISPRCasFinder
CTAGATTCCCGCTTTCGCGGGAATGACGGGATGTAGGTTTTCTTAACCCTGCGTCCTAGATTCCCGCTTTCGCGGGAATGACGG

>NZ_JWNH01000028|1|1|20768-20851|CRISPRCasFinder
CTAGATTCCCGCTTTCGCGGGAATGACGG	GATGTAGGTTTTCTTAACCCTGCGTC
CTAGATTCCCGCTTTCGCGGGAATGACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_JWNH01000028.1\|WP_127281795.1\|17521_19408_-\|bifunctional-aminodeoxychorismate-synthase-component-I/aminodeoxychorismate-lyase	unknown	unknown	gnl\|CDD\|223225
NZ_JWNH01000028.1\|WP_002250391.1\|5128_5452_-\|iron-donor-protein-CyaY	unknown	unknown	gnl\|CDD\|234765
NZ_JWNH01000028.1\|WP_127281793.1\|12284_14717_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_JWNH01000028.1\|WP_009345525.1\|7072_8704_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271366
NZ_JWNH01000028.1\|WP_002233157.1\|6983_7076_-\|methionine/alanine-import-family-NSS-transporter-small-subunit	unknown	unknown	gnl\|CDD\|293556
NZ_JWNH01000028.1\|WP_002221652.1\|10081_11716_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_JWNH01000028.1\|WP_002218098.1\|5522_5693_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|338858
NZ_JWNH01000028.1\|WP_127281796.1\|21189_24051_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173794
NZ_JWNH01000028.1\|WP_127281794.1\|15945_17463_+\|DUF560-domain-containing-protein	unknown	unknown	gnl\|CDD\|368004
NZ_JWNH01000028.1\|WP_002214868.1\|9698_9989_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_JWNH01000028.1\|WP_050887764.1\|24047_24395_-\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000028.1\|WP_002237358.1\|5703_6948_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|273415

Protein	Function_ID	Function_description	E-value
NZ_JWNH01000028.1\|WP_127281795.1\|17521_19408_-\|bifunctional-aminodeoxychorismate-synthase-component-I/aminodeoxychorismate-lyase	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	1.43956e-110
NZ_JWNH01000028.1\|WP_127281794.1\|15945_17463_+\|DUF560-domain-containing-protein	gnl\|CDD\|368004	pfam04575, DUF560, Protein of unknown function (DUF560). Family of hypothetical bacterial proteins.	8.19808e-85
NZ_JWNH01000028.1\|WP_002250391.1\|5128_5452_-\|iron-donor-protein-CyaY	gnl\|CDD\|234765	PRK00446, cyaY, frataxin-like protein; Provisional.	1.38826e-45
NZ_JWNH01000028.1\|WP_002214868.1\|9698_9989_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.91348e-50
NZ_JWNH01000028.1\|WP_127281793.1\|12284_14717_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	2.14329e-119
NZ_JWNH01000028.1\|WP_002237358.1\|5703_6948_+\|diaminopimelate-decarboxylase	gnl\|CDD\|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	0
NZ_JWNH01000028.1\|WP_009345525.1\|7072_8704_-\|sodium-dependent-transporter	gnl\|CDD\|271366	cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter.	0
NZ_JWNH01000028.1\|WP_002233157.1\|6983_7076_-\|methionine/alanine-import-family-NSS-transporter-small-subunit	gnl\|CDD\|293556	pfam16951, MaAIMP_sms, Putative methionine and alanine importer, small subunit. MaAIMP_sms is a family of hypothetical proteins from Proteobacteria that purported to be small subunits of a methionine and alanine importer.	3.9378e-05
NZ_JWNH01000028.1\|WP_002221652.1\|10081_11716_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_JWNH01000028.1\|WP_002218098.1\|5522_5693_+\|hypothetical-protein	gnl\|CDD\|338858	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	4.77658e-05
NZ_JWNH01000028.1\|WP_127281796.1\|21189_24051_-\|S8-family-serine-peptidase	gnl\|CDD\|173794	cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.	4.89772e-61

>NZ_JWNH01000028.1|WP_127281795.1|17521_19408_-|bifunctional-aminodeoxychorismate-synthase-component-I/aminodeoxychorismate-lyase
MPYFALFDDAVSGRAKRYQNHVESRFFRPEELDALDGALQSGWQKGLHSVLFADYGFGLPLTGVESERGGNLALHWFADCADTDAESWLARHSDGIPAGISTPQSSVSETDYLDHIRQIHEAIRRGDTYQINYTTRLHLQAYGNPVSLYRRLRQPVPYAVLSHLPDVEGQSAWTLCFSPELFLNIASDGTISTEPMKGTAPILGDGQDERRAAELQTDPKNRAENVMIVDLLRNDLGKIAQTGKVCVPEPFKVSRFGSVWQMTSTIQAQALPNTSFADILRAAFPCGSITGAPKKMSMQIIESLETEARGLYTGSIGYLNPCKSGLGFEGIFNVVIRTLLLKPVSNSVSDDLDSRLNLNQDKATKPQTRQDEATPYRFKVNPLYQGVYGVGSGIVIDSDPAAEYRECGWKARFLNELRPDFGIFETMRVENGRCALLNRHLCRLNTAARALNLPLPDGCENQIKQYIARLPDGAFRVKALLASDGISLSRAVLNHLADKQRVIISPAILPAQNYLRRFKTTYRALFDQAWQTAETQGAFDSLFFNSDGILLEGGRSNVFVKYQGQWLTPSLDLDILNGIMRQAVLDEPQKYLQTNQVIETHITQKTLQEAEEIRLSNALRGVFAAALA
>NZ_JWNH01000028.1|WP_127281794.1|15945_17463_+|DUF560-domain-containing-protein
MLYFRYGFLVVWCAAGVSAAYGADAPAILDDKALSQVWRSVSDKWAESDWKVENDAPRVVDGDFLLAHPKMLEHSLRDALNGNQADLIASLADLYAKLPDYDAVLYGRARALLAKLVGRPAEAVARYRELHGENAADERILLDLAAAEFDDFRLKSAERHFAEAAKLDLPVPVLENVGRFRKKTEGLTGWRFSGGISPAVNQNANNAAPQYCRQDGGSQICSVSRAERATGLNYEIEAEKLTALADNHYLLFRSNISGTSYYFSKKSAYDDGFGRAYLGWQYKNARQTAGILPFYQVQLSGSDGFDAKTKWVNNRRLPPYMLAHGVGVQLSHTYRPNPGWQFSVALEHYRQRYREQDRAEYNNGRQDGFYVSSAKRLGESATVFGGWQFVRFVPKRETVGGAVNNAAYRRNGVYAGWAQEWRQLGGLNSRVSASYARRNYKGVAAFSTEAQRNREWNVSLALSHDKLSYKGIVPALNYRFGRTESNVPYAKRRNSEVFVSADWRF
>NZ_JWNH01000028.1|WP_127281793.1|12284_14717_-|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MPIPFKPVLAAAAIAQAFPAFAADPAPQSAQTLNEITVTGTHKTQKLGEEKIRRKTLDKLLVNDEHDLVRYDPGISVVEGGRAGSNGFTIRGVDKDRVAINVDGLAQAESRSSEAFQELFGAYGNFNANRNTSEPENFSEVTITKGADSLKSGSGALGGAVNYQTKSASDYVSEDKPYHLGIKGGSVGKNSQRFSSITASGRLFGLDALLVYTRRFGKETKNRSTEGDVKIKNAGYIYNPTDVSGPSKWLDYVATGVARSQPDPQEWVNKSTLFKLGYNFNDRNRIGWIFEDSRTDRFTNELSNLWTGTTTSPATGDYRHRQDVSYRRRSGVEYKNELEHGLWDSLKLRYDKQRIDMNTWTWDIPKNYDTNGINGEVYHSFRHIRQNTAQWTADFEKQLDFSKAVWAAQYGLGGGRGDNANSDYSYFAKLYAPKILASNQAKITMLIENRSKYKFAYWNNAFHLGGNDRFRLNAGIRYDKNSSSAKDDPKYTTAIRGQIPHLGSERAHAGFSYGTGFDWRFTKHLHLLAKYSTGFRAPTSDETWLLFPHPDFYLKANPKLKAEKAKNWELGLAGSGKAGNFKLSGFKTKYRDFIELTYMGVSSDDPNKPTYAPLSDNTALVSSPVWQNQNRSSAWVKGLEFNGTWNLDSIGLPKGLHTGLNVSYIKGKATQNNGKETPINALSPWTAVYSLGYDAPSKRWGINAYATRTAAKKPSDTVHSNDDLNNPWPYAKHSKAYTLFDLSAYLNIGKQVTLRAAAYNITNKQYYTWESLRSIREFGTVNRVNNHTHAGIQRFTSPGRSYNFTIEAKF
>NZ_JWNH01000028.1|WP_002221652.1|10081_11716_+|chaperonin-GroEL
MAAKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAGLDNPFVLLFDKKISNIRDLLPVLEQVAKASRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEKATLDDLGQAKRIEIGKENTTIIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLEGKGNYGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEDKPAMPDMGGMGGMGGMM
>NZ_JWNH01000028.1|WP_002214868.1|9698_9989_+|co-chaperone-GroES
MTIRPLHDRVVVKRLEAEEKTASGIVLPGAAAEKPDMGEVIAVGAGKIGKDGARRPLDVKVGDKIIFGKYSGQTVKADGEELLVMREEDIFGIVEK
>NZ_JWNH01000028.1|WP_009345525.1|7072_8704_-|sodium-dependent-transporter
MFFQKTLSLSDAISIYFAYNGLFLINNSRGINVSDSKTKERATFGTRRAFMIAAIGSAVGLGNIWRFPYIAFENGGGAFILPYLVALLTAGIPLLLLDYAIGHRYRGSAPLAFRRLGRWFEPVGWWNVMTNIVICIYYAVIIGWAASYTYYSVNAAWGADPQGFFFKDFLQMAGPEALGLDFVGKVAGPLAGVWVFTAAIMALGVQKGVARASSFFMPLLLVMFLIMVGISLTLPGAAKGLDALFTPDWSKLADSKVWVAAYGQIFFSLSICFGIMVTYSSYLKKKTDLGGTGLVVGFANSSFELLAGIGVFAALGFMAQAGGKAVNEVASGGIGLAFIAFPTIINQAPMGWLIGILFFGSLVFAGVTSMISILEVIVAAIQDKLNIGRVNATLLVCIPMGIVSTLLFGTATGLPVLDVMDKFVNTYGIVAAGFVYVAAIIISGRLPELRKHLNALSSIRIGGLWTVCVVVTVVMLGYMLFKDTSGLMEKNYEGYPDGFLSIFGWGMSAALVVFGLLLSLLPWKHGQDFNVKDEHEHEQGEEK
>NZ_JWNH01000028.1|WP_002233157.1|6983_7076_-|methionine/alanine-import-family-NSS-transporter-small-subunit
MSTSAIVMMIVSIVIIWGGLLLSLLRLPNE
>NZ_JWNH01000028.1|WP_002237358.1|5703_6948_+|diaminopimelate-decarboxylase
MTLFCEQVPYPRLAEAFGTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIKHFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPEIDRIQKVAARLGKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQQPNLKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQNEKVPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGALLTRVEFVKYGEEKNFVMVDAAMNDLMRPALYDAYHHIEAVETKDIEPLTANIVGPICETGDFLGKDRTIACEEGDLLLIRSAGAYGASMASNYNARNRAAEVLVNGGGYKLIRRRETLEQQMANELACLQAEHQNAV
>NZ_JWNH01000028.1|WP_002218098.1|5522_5693_+|hypothetical-protein
MKYGVFFAAATALLLSACGYKGDLYLPKEGDKARFGVIQTGLQLQGKPQSAPPTQK
>NZ_JWNH01000028.1|WP_002250391.1|5128_5452_-|iron-donor-protein-CyaY
MMTESEFIRASEALFEHIEGQIDENGWDFDCQFAGNVLTIEAGNGTQIIVNRHTPNQELWIAAKSGGYHFAEQNGKWLATRDNRDFYDVLNEALSAASGEAVKIAEL
>NZ_JWNH01000028.1|WP_127281796.1|21189_24051_-|S8-family-serine-peptidase
MINLKPAIEAGYTGRGVEVGIVDTGESVGSISFPELYGRKEHGYNENYKNYTAYMRKEAPEDGDGKDIEASFDDEVVIETEAKPTDIRHVKEIGHIDVVSHIIGGRSVDGRPAGGIAPDATLHIMNTHDGTKNEIMSAAIRNAWVKLGERGVRIVNNSFGTTSRAGTADHFQIANSEEQYRQALLAYSGGDKTDEGIRLMQQSDYGNLSYHIRNKNMLFIFSASNDAQAQPNTLTLLPFYEKDAQKGIITVAGVDRSGEKFNGSNHCGITAMWCLSAPYEASVRFTRTNPIQIAGTSFSAPIVTGTAALLLQKYPWMSNDNLRTTLLTTAQDIGAVGVDSKFGWGLLDAGKAMNGPASFPFGDFTADTKGTSDIAYSFRNDISGTGGLIKKGGSQLQLHGNNTYTGKTIIEGGSLVLYGNNKSDMRVETKGALIYNGAASGGSLNSDGIVYLADTDRSGANETVHIKGDLQLGGEGTLYTRLGKLLKVDGTAMTGGKLYMSARGKGAGYLNRTGQRVPFLSAAKIGRDYSFFTNIETDGGLLASLDSVEKTAGSEGDTLSYYVRRGNAARTASAAAHSAPAGLKHAVEQGGSNLENLMVELDASESSATPETVETAAADRTDMPGIRPYGATFRAAAAVQHANAADGVRIFNSLAATVYADSTAAHADMQGRRLKAVSDGLDHNGTGLRVIAQTQQDGGTWEQGGVEGKMRGSTQTVGIAAKTGENTTAAATLGMGRSTWSENSANAKTDSISLFAGIRHDAGDIGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSITEGTLVGLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVEFGNGWNGLARYSYAGSKQYGNHSGRVGVGYRF
>NZ_JWNH01000028.1|WP_050887764.1|24047_24395_-|hypothetical-protein
MRTTPTFPTKTFKPAAMALAVATTLSACLGGGGGSTSAPDFNAGGTGIGSNSRATTAKSAAVSYAGIKNEMCKDRSMLCAGRDDVAVTDRDAKINAPPRICIPETLQTQMTHTRI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_JWNH01000028_1	1.1\|20797\|26\|NZ_JWNH01000028\|CRISPRCasFinder	20797-20822	26	NZ_JWNH01000001.1	85027-85052	0	1.0
NZ_JWNH01000028_1	1.1\|20797\|26\|NZ_JWNH01000028\|CRISPRCasFinder	20797-20822	26	NZ_JWNH01000001.1	85474-85499	0	1.0
NZ_JWNH01000028_1	1.1\|20797\|26\|NZ_JWNH01000028\|CRISPRCasFinder	20797-20822	26	NZ_JWNH01000001.1	86013-86038	0	1.0
NZ_JWNH01000028_1	1.1\|20797\|26\|NZ_JWNH01000028\|CRISPRCasFinder	20797-20822	26	NZ_JWNH01000017.1	38218-38243	0	1.0
NZ_JWNH01000028_1	1.1\|20797\|26\|NZ_JWNH01000028\|CRISPRCasFinder	20797-20822	26	NZ_JWNH01000027.1	25517-25542	1	0.962
NZ_JWNH01000028_1	1.1\|20797\|26\|NZ_JWNH01000028\|CRISPRCasFinder	20797-20822	26	NZ_JWNH01000030.1	59-84	1	0.962
NZ_JWNH01000028_1	1.1\|20797\|26\|NZ_JWNH01000028\|CRISPRCasFinder	20797-20822	26	NZ_JWNH01000045.1	379-404	0	1.0

1. spacer 1.1|20797|26|NZ_JWNH01000028|CRISPRCasFinder matches to position: 85027-85052, mismatch: 0, identity: 1.0

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgcgtc	Protospacer
**************************

2. spacer 1.1|20797|26|NZ_JWNH01000028|CRISPRCasFinder matches to position: 85474-85499, mismatch: 0, identity: 1.0

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgcgtc	Protospacer
**************************

3. spacer 1.1|20797|26|NZ_JWNH01000028|CRISPRCasFinder matches to position: 86013-86038, mismatch: 0, identity: 1.0

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgcgtc	Protospacer
**************************

4. spacer 1.1|20797|26|NZ_JWNH01000028|CRISPRCasFinder matches to position: 38218-38243, mismatch: 0, identity: 1.0

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgcgtc	Protospacer
**************************

5. spacer 1.1|20797|26|NZ_JWNH01000028|CRISPRCasFinder matches to position: 25517-25542, mismatch: 1, identity: 0.962

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgcaggttttcttaaccctgcgtc	Protospacer
****.*********************

6. spacer 1.1|20797|26|NZ_JWNH01000028|CRISPRCasFinder matches to position: 59-84, mismatch: 1, identity: 0.962

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgcaggttttcttaaccctgcgtc	Protospacer
****.*********************

7. spacer 1.1|20797|26|NZ_JWNH01000028|CRISPRCasFinder matches to position: 379-404, mismatch: 0, identity: 1.0

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgcgtc	Protospacer
**************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_JWNH01000009

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_JWNH01000009_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JWNH01000009_1

29677-29831

Orphan

Consensus_repeat	Method
CCGCCGCAACGCGACCTCGCTGCAATTAAGCCGCTGCGCCAACATCGCCGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_JWNH01000009_1

>merge|NZ_JWNH01000009|1|29677-29831|CRISPRCasFinder
CCGCCGCAACGCGACCTCGCTGCAATTAAGCCGCTGCGCCAACATCGCCGACCGGACTGGGCTGGATGCACTGGGTGGTCGCCGACATTCCCGCCGATGTCCGCCGCCGCAACGCGGCCTCGCTGCAATTAAGCCGCTGCGCCAACATCGCCGAC

>NZ_JWNH01000009|1|1|29677-29831|CRISPRCasFinder
CCGCCGCAACGCGACCTCGCTGCAATTAAGCCGCTGCGCCAACATCGCCGAC	CGGACTGGGCTGGATGCACTGGGTGGTCGCCGACATTCCCGCCGATGTCCG
CCGCCGCAACGCGGCCTCGCTGCAATTAAGCCGCTGCGCCAACATCGCCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_JWNH01000009.1\|WP_002235978.1\|20216_21029_-\|squalene-synthase-HpnC	unknown	unknown	gnl\|CDD\|274592
NZ_JWNH01000009.1\|WP_101116784.1\|22070_22367_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_JWNH01000009.1\|WP_127281623.1\|46874_49079_-\|transferrin-binding-protein-like-solute-binding-protein	unknown	unknown	gnl\|CDD\|366565
NZ_JWNH01000009.1\|WP_002219012.1\|33262_33772_-\|hemerythrin-domain-containing-protein	unknown	unknown	gnl\|CDD\|213983
NZ_JWNH01000009.1\|WP_002219014.1\|31359_32505_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NZ_JWNH01000009.1\|WP_002219013.1\|32617_33238_-\|diadenosine-tetraphosphatase	unknown	unknown	gnl\|CDD\|371245
NZ_JWNH01000009.1\|WP_002229688.1\|26409_26856_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NZ_JWNH01000009.1\|WP_002219010.1\|34698_35121_-\|DUF721-domain-containing-protein	unknown	unknown	gnl\|CDD\|377496
NZ_JWNH01000009.1\|WP_002219011.1\|33866_34418_-\|azurin	unknown	unknown	gnl\|CDD\|225781
NZ_JWNH01000009.1\|WP_002212852.1\|40104_42033_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_JWNH01000009.1\|WP_050894793.1\|26910_27921_-\|lipopolysaccharide-heptosyltransferase-II	unknown	unknown	gnl\|CDD\|274026
NZ_JWNH01000009.1\|WP_127281620.1\|38145_39918_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_JWNH01000009.1\|WP_002212871.1\|21115_21598_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_JWNH01000009.1\|WP_127281622.1\|44027_46862_-\|lactoferrin/transferrin-family-TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273799
NZ_JWNH01000009.1\|WP_127281619.1\|24024_25950_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|273608
NZ_JWNH01000009.1\|WP_002219009.1\|35251_38002_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_JWNH01000009.1\|WP_002232751.1\|17742_19548_-\|protein-disulfide-reductase-DsbD	unknown	unknown	gnl\|CDD\|226685
NZ_JWNH01000009.1\|WP_127281618.1\|22476_23844_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_JWNH01000009.1\|WP_002251593.1\|28317_29070_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NZ_JWNH01000009.1\|WP_002238928.1\|19674_20145_+\|DUF1841-family-protein	unknown	unknown	gnl\|CDD\|370177

Protein	Function_ID	Function_description	E-value
NZ_JWNH01000009.1\|WP_002235978.1\|20216_21029_-\|squalene-synthase-HpnC	gnl\|CDD\|274592	TIGR03464, HpnC, squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.	3.74743e-137
NZ_JWNH01000009.1\|WP_101116784.1\|22070_22367_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	2.48159e-11
NZ_JWNH01000009.1\|WP_127281623.1\|46874_49079_-\|transferrin-binding-protein-like-solute-binding-protein	gnl\|CDD\|366565	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B. Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis, and cell adherence. Pathogenic Gram-negative bacteria within the Neisseriaceae and Pasteurellaceae families rely on a specialized uptake system, characterized by an essential surface receptor complex that acquires iron from host transferrin (Tf) and transports the iron across the outer membrane. They have an iron uptake system composed of surface exposed lipoprotein, Tf-binding protein B (TbpB), and an integral outer-membrane protein, Tf-binding protein A (TbpA), that together function to extract iron from the host iron binding glycoprotein (Tf). TbpB is a bilobed (N and C lobe) lipid-anchored protein with each lobe consisting of an eight-stranded beta barrel flanked by a handle domain made up of four (N lobe) or eight (C lobe) beta strands. TbpB extends from the outer membrane surface by virtue of an N-terminal peptide region that is anchored to the outer membrane by fatty acyl chains on the N-terminal cysteine and is involved in the initial capture of iron-loaded Tf. This domain family is found in C and N lobe eight stranded beta barrel region of TbpB proteins. The eight-stranded barrel domains in N and C lobe draw comparisons to eight-stranded beta barrel outer-membrane protein W (OmpW). However, the barrel domains of TbpB have the hydrophobic residues line the inner surface of the beta barrels to create a stable hydrophobic core.	6.792e-27
NZ_JWNH01000009.1\|WP_002219012.1\|33262_33772_-\|hemerythrin-domain-containing-protein	gnl\|CDD\|213983	cd12108, Hr-like, Hemerythrin-like domain. Hemerythrin (Hr) like domains have the same four alpha helix bundle and a similar, but slightly different active site structure than hemerythrin. They are non-heme diiron binding proteins mainly found in bacteria and eukaryotes. Like Hr, they may be involved in oxygen transport or like human FBXL5 (F-box and leucine-rich repeat protein 5), a member of this group, play a role in cellular iron homeostasis.	2.8591e-12
NZ_JWNH01000009.1\|WP_002219014.1\|31359_32505_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_JWNH01000009.1\|WP_002219013.1\|32617_33238_-\|diadenosine-tetraphosphatase	gnl\|CDD\|371245	pfam10786, G6PD_bact, Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49). This family is conserved in Firmicutes and Proteobacteria. Several members are annotated as being glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49) but this could not be confirmed.	1.16993e-104
NZ_JWNH01000009.1\|WP_002229688.1\|26409_26856_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	9.91066e-78
NZ_JWNH01000009.1\|WP_002219010.1\|34698_35121_-\|DUF721-domain-containing-protein	gnl\|CDD\|377496	pfam05258, DUF721, Protein of unknown function (DUF721). This family contains several actinomycete proteins of unknown function.	1.06445e-07
NZ_JWNH01000009.1\|WP_002219011.1\|33866_34418_-\|azurin	gnl\|CDD\|225781	COG3241, COG3241, Azurin [Energy production and conversion].	1.82228e-76
NZ_JWNH01000009.1\|WP_002212852.1\|40104_42033_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_JWNH01000009.1\|WP_050894793.1\|26910_27921_-\|lipopolysaccharide-heptosyltransferase-II	gnl\|CDD\|274026	TIGR02195, ADP-heptose--LPS_heptosyltransferase_2, lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	3.1389e-169
NZ_JWNH01000009.1\|WP_127281620.1\|38145_39918_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_JWNH01000009.1\|WP_002212871.1\|21115_21598_-\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	7.29573e-52
NZ_JWNH01000009.1\|WP_127281622.1\|44027_46862_-\|lactoferrin/transferrin-family-TonB-dependent-receptor	gnl\|CDD\|273799	TIGR01776, Lactoferrin-binding_protein_A, TonB-dependent lactoferrin and transferrin receptors. This family of TonB-dependent receptors are responsible for import of iron from the mammalian iron carriers lactoferrin and transferrin across the outer membrane. These receptors are found only in bacteria which can infect mammals such as Moraxella, Mannheimia, Neisseria, Actinobacillus, Pasteurella, Haemophilus and Histophilus species. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	0
NZ_JWNH01000009.1\|WP_127281619.1\|24024_25950_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.03545e-95
NZ_JWNH01000009.1\|WP_002219009.1\|35251_38002_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_JWNH01000009.1\|WP_002232751.1\|17742_19548_-\|protein-disulfide-reductase-DsbD	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	0
NZ_JWNH01000009.1\|WP_127281618.1\|22476_23844_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.03525e-127
NZ_JWNH01000009.1\|WP_002251593.1\|28317_29070_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	4.56269e-62
NZ_JWNH01000009.1\|WP_002238928.1\|19674_20145_+\|DUF1841-family-protein	gnl\|CDD\|370177	pfam08897, DUF1841, Domain of unknown function (DUF1841). This family of proteins are functionally uncharacterized.	3.26126e-64

>NZ_JWNH01000009.1|WP_002251593.1|28317_29070_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MITLPSLNNLPSKWDEIRYWLETRVCECGVMPHPNLTECEAGQFDRDFWDNIGCAPEEYVRIRRAIRLLEARYPDSLNELVCAAIATPLGEMLAVFGNKGLCLLEFVGQKHLEQEIAAVQKALRGRFVFREDERTQLLRQELDLYFKGRLKTFATPLEQIGTEFQKQAWDALLAIPYGETRSYKEQAQRLGNPNAVRAVAAANGQNKVSILIPCHRVIGSDGKLTGYAGGLNRKQFLLALERGEVQTALF
>NZ_JWNH01000009.1|WP_050894793.1|26910_27921_-|lipopolysaccharide-heptosyltransferase-II
MSIKILIISPSWIGDCVMTQPLFRRLKELHPGCTIDVFAPKWSMAVFERMPEVNEILENPFGHGALELKRRWRVGRDLGRRGYDQVIVLPGSLKSAVIALATGIGKRTGYVGESRYFLLNDIRRLDKERLPLMVDRYTALAHPSQEDFDGHSGFPEFSIDERRREISVETFGLDIGKPVLAFCPGAEFGPAKRWPTRHFAELGKHYLAAGWQVWLFGSQKDDEIAEEINRLSDGMCVNLCGKTDLSQAMDLLSLADTVVCNDSGLMHLAAALGRKVVAVYGSSSPTHTPPLSDKAKIVSLHLECSPCFKRECPLGHTDCLNRLYPEKIVQAVEEAV
>NZ_JWNH01000009.1|WP_002229688.1|26409_26856_-|SsrA-binding-protein-SmpB
MAIANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESYIYWKKDAFYLVGCHITALPTASTHIKPDAVRPRKLLLNQSEINKLIGKTERAGYTIVPLDLHFSRGKIKMEIGLAKGKKQHDKRQSMKEADWKREKQRLIKHTR
>NZ_JWNH01000009.1|WP_127281619.1|24024_25950_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MAADYTYDNSKLTNEQIERLKKLRDRDSEYWKEETYFIGNNGTNSPKVPLLFPKDSSVPFENIDNSKVISFHDQKYTEDYLVGFAQGFGVAKRNGDTEEPVQKYFKECLNTGKDKTDSCKDNPLLSGLYIKSDIFTPWATVKNSHINSEILAVGNYTKLMLSAQHSSTWAEHLYSKAELSLTVQDNSHVIGQTIDLGALILTNSLWEPRWNSNIDYLATENADIRFNTKSESLLVKEDYAGGARFRFAYDLQDKAPETPVLTFEQNITGTSDIIFENPIDNLKSLDGHQIVKVNGTADKNAFRLSGKYRKGIYTLSLQRRPEGFFTKVQERDNIAIYAQQAQAANTLFALRLNDKNSDIFDRTLPRKGLWLRLISGHLSQDVQGKTAPVEGNRKGIQLGGDVFSLQNHNYQLSVGLMGGQAEQRSTFRNPDTDNLTTGNVKGFGAGVYATWHQLQDKQTGAYADSWVQYQRFRHRINTEDGTERFTSKGITASIEAGYNALLAEHVTKKGNSLRVYLQPQAQLTYLGVNGKFSDSENAHVNLLGSRQLQTRVGVQAKAQFSLYKNIAIEPFAAVNALYHNKPFGVEIDGERRVINNKTAIESQLGVAVKIKSHLTLQATFNRQTGKHHQAKQGALNLQWTF
>NZ_JWNH01000009.1|WP_127281618.1|22476_23844_+|FAD-binding-oxidoreductase
MPDLHTEFSRLLPADEIAELSPTLLKDQRNRFTSAPDIILQPRSVESVQTIMRFCYEHRIPVTPQGGNTGLCGAAVSENGVLLNLSKLNRIRSINLSDNCITVEAGSVLQTVQQAAEASNRLFPLSLASEGSCQIGGNIACNAGGLNVLRYGTMRDLIIGLEVVLPNGERVSHLHPLHKNTTGYDLRHLFIGSEGTLGIITAATLKLFARPSDKATAWVGIPDIESAVRLLTETQAHFAERLCSFELVGRFAAELSSEFSKLPLPTHSEWHILLELTDSLPNGNLDGQLAEFLYEKGFTDSVLTQSEQERIHMWALRENISASQRKLGTSIKHDIAVPIGRVADFVRRCAKDLEQNFKGIQIVCFGHLGDGSLHYNTFLPDILSNEAYRYEDDINSTVYRNVLACNGTIAAEHGIGIIKKQWLDKVRTPAEIALMKSIKQHLDPYNIMNPGKLLP
>NZ_JWNH01000009.1|WP_101116784.1|22070_22367_+|hypothetical-protein
MKKSLFAAALLSLVLAACGGEKAAEAPATEAPAAEAPATEAPAAEAPATEAPAAEAPATEAPAAEAPAAEAAATEAPAAEAAASEAPAAEAPAAEAAK
>NZ_JWNH01000009.1|WP_002212871.1|21115_21598_-|peptidylprolyl-isomerase
MAIVKNSVVSLHYEMYDANNQLLDKTEEPIAYLHGGYDGIFPLVEEALHGKDAGDTVDVALSPDDAFGEQDPELVRIEDAGVFPVEVEVGMMFEADDPETGDVVVYRVTDVADGKAVVDGNHPLAGMKIRFKATVESVRDASDEEIAHGHVHGPHGHHHH
>NZ_JWNH01000009.1|WP_002235978.1|20216_21029_-|squalene-synthase-HpnC
MSVGHYENFPVGSLILPRRLRKPVHAVYAFARTADDMADEGSMPSEARLAGLEGLRRELDVLASGGRSAHPLIARLDAEAVVPFGLDLQPFYDLLSAFSQDVVKTRYAHFGELADYCRRSANPVGRIMLALYGKTDAVCVAQSDGICTALQLVNFWQDVAVDWQKGRVYIPQDDLLKFGVSEEQIAAGRADAAFQRLMAYECRRAFRMLKAGSPLARELKGRIGLELRMIVLGAQLILQKLDACRYDVFAQRPVLDKKDWLIMLKKALWK
>NZ_JWNH01000009.1|WP_002238928.1|19674_20145_+|DUF1841-family-protein
MYDVNTHDVRRFFAHVWQQRLNPLQLSALEQKALRIVEAHPEYHRYLERIEDHLDTDWLPENGESNPFLHMSLHLSVQEQAGIDQPHGIRAIHDTLCAKRGWLEAEHEMMEALAETLWTAQRYGTGLDVNFYMTRLRKLIGLGAENQARLNPHEIA
>NZ_JWNH01000009.1|WP_002232751.1|17742_19548_-|protein-disulfide-reductase-DsbD
MKKLICLFAVFLMLCGRAFALDANDLLPPEKAFVPELAVADDGVNVRFRIADGYYMYQAKIVGKTDPADLLGQPSFSKGEEKEDEFFGRQTVYHHEAQVAFPYAKAVGEPYKLVLTYQGCAEAGVCYPPVDTEFDISGNGTYHPQTDEPASAKDRFLQPSSQNGSGALPPPKGDEGGDSRFKLSWDTLNANLLAFFLAGLGLSFTACMYPLLPIVSSIVVGDKKAGKARAFVLSVVYVQGLALTYTLVGIVAGLTGALLTVWLQQAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLSGGKIVSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPLIAIGTFGGHILPRAGDWMNAVKYAFGFILLAVAVYLATPHLPYYLVVALYTLLMLVPACMLLVNGRRQKRRPKAVAFALGGILLIGGAWFGWQGANGKTTALHHFLTLNPPAEAGKSSEHGKMFADTAALKAAMDTALKEHPDKPVVLDFYADWCISCKEMAAYTLNQPEVHQAVDMERFFQIDVTANTPEHQALLKEYGLFGPPGVFVVRSDGSRSEPLLGFVKADKFIEWYEQNR
>NZ_JWNH01000009.1|WP_002219014.1|31359_32505_-|succinyl-diaminopimelate-desuccinylase
MTETQSLELAKELISRPSVTPDDRDCQKLLAERLHKIGFAAEELHFGDTKNIWLRRGTKAPVVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACERFVAEHPDHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMIKNGRRGSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNKYFPPTSFQISNINGGTGATNVIPGELSVKFNFRFSTESTEAGLKQRVHAILDKHGVQYDLQWSCSGQPFLTHAGKLTDVARAAIAEICGVETELSTTGGTSDGRFIKAIAKELIELGPSNATIHQINENVRLNDIPKLSAVYEGILARLLAGNAV
>NZ_JWNH01000009.1|WP_002219013.1|32617_33238_-|diadenosine-tetraphosphatase
MLTSKSCDLFNIPFFQFSQLKKYQPESIPQIKADYKENWQVWQQLIQQVAAELGAPFAPPHIERWCNGWQVRAHFFAYFKYEQYKNSAAILSILLNRRRLSVSLDWHCYKADVSPIALPEYNRWLDDFDTDKYAAFDMWHGAESEYDDYRTVAQQSESDRKLQNDEDFFCIGKHIERDDLGKQDVAKWIAETVEDLLPLYEACHGK
>NZ_JWNH01000009.1|WP_002219012.1|33262_33772_-|hemerythrin-domain-containing-protein
MNPFETKSVTFAEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQITRYFNVAAPLHHEDEEEDFFPLLLQYAPQAREGVDELLRQHIGLHDNWAAVSAEFAKLEADNAYVPDAEAFKRFVAGYDVHLAIEEPLFDMGNTFIPKEKLTEIGEIMAARRRK
>NZ_JWNH01000009.1|WP_002219011.1|33866_34418_-|azurin
MKAYLALISAAVIGLAACSQEPAAPAAEATPAAEAPASEAPAAEAAPADAAEAPAVGNCAATVESNDNMQFNTKDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGEEASLTLDPAKLADGEYKFACTFPGHGALMNGKVTLVD
>NZ_JWNH01000009.1|WP_002219010.1|34698_35121_-|DUF721-domain-containing-protein
MNLEQLGRRDALLSGLLKQAGQWRRLDAAVKKLLPANLHPHFQTVCIEDGRLVLLAANNMAASRLKMIAPSVLPQLAGLDASIRSVSVRLVPKPEKPPKTNTLHLSKAALESFGSAAVKLEKRHPELAEALANLVRRHGA
>NZ_JWNH01000009.1|WP_002219009.1|35251_38002_+|preprotein-translocase-subunit-SecA
MLTNIAKKIFGSRNDRLLKQYRKSVARINALEEQMQALSDADLQAKTAEFKQRLADGQTLDGILPEAFAVCREASRRTLGMRHFDVQLIGGMVLHDGKIAEMRTGEGKTLVATLAVYLNALAGKGVHVVTVNDYLASRDAGIMEPLYNFLGLTVGVIISDMQPFDRQNAYAADITYGTNNEFGFDYLRDNMVTDQYDKVQRELNFAVVDEVDSILIDEARTPLIISGQADDNIQLYQIMNTVPPHLVRQETEEGEGDYWVDEKAHQVILSEAGHEHAEQILTQMGLLAENDSLYSAANIALMHHLMAALRAHSLFHKDQHYVIQDGEIVIVDEFTGRLMSGRRWSEGLHQAVEAKEGVEIKRENQTLASITFQNYFRLYTKLSGMTGTADTEAFEFQSIYNLETVIIPTNRPVQRKDFNDQIFRSAEEKFEAVVKDIEECHKRGQPVLVGTTSIENSELVSHLLQKAGLPHNVLNAKEHEREALIVAQAGKVGAITVATNMAGRGTDIVLGGNLKHQTDAIRADETLSDEEKQAQIAALENGWQAEHDKVMEAGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSFEDPLLRLFALDRAAAILNRLAPERGVAIEHNLLTRQIEGAQRKVEGRNFDMRKQVLEYDDVANEQRKVIYSQRNEILTSKDISDLMQEIRSDVVSDLVDTYMPPDSMEEQWDIPTLENRLAAEFRLHEDIQSWLKADNAIDGQDIKERLIERIENEYAAKTELVGKQAMADFERNVMLQVIDNQWREHLAAMDYLRQGIHLRSYAQKNPKQEYKREAFTMFQDLWNGIKFHIASLLTSVQIEQNPVAVVEEQPIGNIQSIHSESPDMEELLGQSQTDLVTEAFNPDGTDFSPEALEARGQIVHRNDPCPCGSGLKYKQCHGKLA
>NZ_JWNH01000009.1|WP_127281620.1|38145_39918_+|DNA-primase
MIPSDFIDELLAKTDIVDIIDEQVPLKKGGANYMACCPFHKEKTPSFSVSPTKQFYHCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQTLEETTAAAADFYAQQLKFNPTTKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPNTALVDTGMVIDNEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVLDDSKPKYLNSPDTPLFDKGKNLYGLYEGRAAVKEVGRILVVEGYMDVVALAQFGVGYGVAALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQITAPALAYLLKQRLSELVGIDPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLVQRQIRSLLINPDWAAYIDLPDYLALDGDFACLANLAETIKNHPSVPATAQVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQKSLQSGLNESEKKLLLSLLTAKQN
>NZ_JWNH01000009.1|WP_002212852.1|40104_42033_+|RNA-polymerase-sigma-factor-RpoD
MSKNQNHEEYQDDARPLTIEEQRARLRQLIIMGKERGYITYSEINDALPDDMSDADQIDNIVSMISGLGIQVTEHAPDAEDILLSDNAAVTDDDAVEEAEAALSSADSEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALKNMVQAISACPGSIAEILELIEKIRKDEIRVDEVVEAIIDPNEVLLNELGLGHLETTAPEKPSNDNSDENEDDEESEEDADEISAANLAELKQKVIGHFAQIEKDYKKMIGRLEKHHSRHKDYLAYRDAIANKLLEVRFATRQIDSLSSSLRGKVENIRKLEREIRDICLDRVHMERDYFIQNFLPEITNLEWIEEEIAKGRVWSDALDRFRHAILEKQTELADMEKETRISIEELKEINKNMVSSEKETAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQETGEEPDSAKLAELMQMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDANNVAPADAAMYTSLHEVTKEILESLTPREAKVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPTRSDRLRSFLDSEDSKL
>NZ_JWNH01000009.1|WP_127281622.1|44027_46862_-|lactoferrin/transferrin-family-TonB-dependent-receptor
MNKKHGFQLTLTALAVATAFPAYAAQAGGATPDAAQTQSLKEVTVRAAKVGRRSKEATGLGKIVKTSETLNKEQVLGIRDLTRYDPGVAVVEQGNGASGGYSIRGVDKNRVAVSVDGVAQIQAFTVQGSLSGYGGRGGSGAINEIEYENISTVEIDKGAGSSDHGSGALGGAVAFRTKEAADLISDGKSWGIQAKTAYGSKNRQFMKSLGAGFSQDGWEGLLIRTERQGRETRPHGDIADGVEYGIDRLDAFRQTYDIQKQNKKAEYFLAEGESESKPVAKLAGNGNYLKNQLNRWVEERRSKGQALNSEEEAMVREAQARHENLSAQSYTGGGRILPDPMDYRSGSWLAKLGYRFGGRHYVGGVFEDTKQRYDIRDMTEKQYYGTDESKKFSNKSGVYDGNDFRDGLYFVPNIEEWKGDTNLVKGIGLKYSRTKFIDEHHRRRRMGLLYRYENEKYSDNWADKAVLSFDKQGVATDNNTLKLNCAVYPSVDKSCRASADKPYSYDSSDRFHYREQHNVLNASFEKSLKNKWTKHHLTLGFGYDASKAVSRPEQLSHNAARISEHTGFDDNNQDKYRLGKPEVVEGSVCGYIETLRSRKCVPRKINGSNIHISLNDRFSIGKYFDFSLGGRYDRQNFTTSEELVRSGRYVDRSWNSGIVFKPSRHLSLSYRASSGFRTPSFQELFGIDIYHDYPKGWQRPALKSEKAANREIGLQWKGDFGFLEISSFRNRYTDMIAVADQKTKLPDSTGRLTEIDIRDYYNAQNMSLQGINILGKIDWNGVYGKLPEGLYTTLAYNRIKPKSVSNRPDLSLRSYALDAVQPSRYVLGFGYDQPEGKWGANIMLTYSKGKNPDELAYLAGDQKRYSTKRASSSWSTADVSAYLNLKKRLTLRAAIYNIGNYRYVTWESLRQTAESTANRHGGDSNYGRYAAPGRNFSLALEMKF
>NZ_JWNH01000009.1|WP_127281623.1|46874_49079_-|transferrin-binding-protein-like-solute-binding-protein
MCKPNYGGIVLLPLLLASCIGGNFGVQPVAKPTPTAQTPSNSKPSKPEDIPAPAPAEPSVETTPVNQPAVGAAMRLPRRNIAFYNKDGTEIPDKHQAEEYLPLKEEDILFLDGTPKEQVDKLKKEIKRRHPNAQIYTSDSKDAVYQYKYVRAGYVYTQTGEDEIKQNSGSKRFTHRFGYDGFVYYSGEHPSQSLPSVGTVEYSGNWQYMTDAKRRRTGQAVASEDLGYATYYGNQIGATSYAARDADDREKHPAKYTVNFDKKTLTGQLIKNQYVQNKSNPNEPKNPLIIYNITAKLDGNRFTGSAEVNPDLAKNHAGKRHLFFHADADQRLEGGFFGYKGEELAGRFISNDNSVFGVFAGKQNSSVPSEAHAKILDSLKIAADEAADPKARPFIAEPMPDFGHPDKLLVEGREIPLVSQEKTIKLADGREMTVRACCDFLTYVKLGRIKTDRPASKPKAEDKGEDEEDTGVDNGEEGTEDEAAEGSEGGEDEIGDEEEGTEDAAVGDEGSKEDEAVEGEDGEEDEVEEPEEESPEESGGSDGIPPAPEASKGRDIDLFLKGIRTAEADIPHTGKAHYTGTWEARIGTPIQWDNQADKKEAKAEFDVDFGKKSISGKLTEKNGVEPAFHIENGKIEGNGFYATAHTRENGINLSGNGSTKPKTFQASNLRVEGGFYGPKAEELGGIIFNNDGKSLGITEGTENKVEAEADVGKQLEPDEVKHKFGVVFGAKKDN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_JWNH01000017

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

8. NZ_JWNH01000007

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_JWNH01000007_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JWNH01000007_1

20293-20371

Orphan

Consensus_repeat	Method
TAGGTCTGTCCACACGGGAACTTAT	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NZ_JWNH01000007_1

>merge|NZ_JWNH01000007|1|20293-20371|CRISPRCasFinder
TAGGTCTGTCCACACGGGAACTTATGCGCCGTCATTCCCGCGCAGGTGGGAATATAGGTCTGTCCGCACGGGAACTTAT

>NZ_JWNH01000007|1|1|20293-20371|CRISPRCasFinder
TAGGTCTGTCCACACGGGAACTTAT	GCGCCGTCATTCCCGCGCAGGTGGGAATA
TAGGTCTGTCCGCACGGGAACTTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_JWNH01000007.1\|WP_002215682.1\|16203_16836_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_JWNH01000007.1\|WP_127281580.1\|22539_22851_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000007.1\|WP_002218476.1\|22854_23055_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000007.1\|WP_002223128.1\|23550_23853_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000007.1\|WP_164732512.1\|24199_25813_+\|T-cell/B-cell-stimulating-protein-TspB	unknown	unknown	gnl\|CDD\|283306
NZ_JWNH01000007.1\|WP_127281574.1\|11908_12523_+\|tellurite-resistance-TerB-family-protein	unknown	unknown	gnl\|CDD\|225526
NZ_JWNH01000007.1\|WP_002212529.1\|23292_23523_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000007.1\|WP_002212523.1\|26400_27588_+\|DUF2075-domain-containing-protein	unknown	unknown	gnl\|CDD\|283385
NZ_JWNH01000007.1\|WP_002254441.1\|9394_9565_-\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000007.1\|WP_127281575.1\|12813_14682_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_JWNH01000007.1\|WP_002221578.1\|17144_19025_+\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|223631
NZ_JWNH01000007.1\|WP_002221953.1\|27802_28759_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_JWNH01000007.1\|WP_127281573.1\|8025_9327_+\|deoxyribodipyrimidine-photo-lyase	unknown	unknown	gnl\|CDD\|223492
NZ_JWNH01000007.1\|WP_002216359.1\|7124_8036_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_JWNH01000007.1\|WP_002221574.1\|9721_11872_+\|ATP-dependent-DNA-helicase-DinG	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|236966
NZ_JWNH01000007.1\|WP_002227785.1\|26115_26400_+\|DUF2523-domain-containing-protein	unknown	unknown	gnl\|CDD\|371214
NZ_JWNH01000007.1\|WP_127281576.1\|14761_16132_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_JWNH01000007.1\|WP_164732513.1\|30336_32745_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|224369
NZ_JWNH01000007.1\|WP_002216361.1\|6618_7017_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_JWNH01000007.1\|WP_127281579.1\|21313_22528_+\|Replication-initiation-factor-family-protein	unknown	unknown	gnl\|CDD\|225497

Protein	Function_ID	Function_description	E-value
NZ_JWNH01000007.1\|WP_002215682.1\|16203_16836_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	9.34183e-62
NZ_JWNH01000007.1\|WP_164732512.1\|24199_25813_+\|T-cell/B-cell-stimulating-protein-TspB	gnl\|CDD\|283306	pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein. This family consists of several Neisseria meningitidis TspB virulence factor proteins.	0
NZ_JWNH01000007.1\|WP_127281574.1\|11908_12523_+\|tellurite-resistance-TerB-family-protein	gnl\|CDD\|225526	COG2979, COG2979, Uncharacterized protein conserved in bacteria [Function unknown].	9.22495e-71
NZ_JWNH01000007.1\|WP_002221953.1\|27802_28759_+\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.93582e-33
NZ_JWNH01000007.1\|WP_002212523.1\|26400_27588_+\|DUF2075-domain-containing-protein	gnl\|CDD\|283385	pfam05707, Zot, Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.	1.45872e-23
NZ_JWNH01000007.1\|WP_127281575.1\|12813_14682_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	3.08053e-79
NZ_JWNH01000007.1\|WP_002221578.1\|17144_19025_+\|RNB-domain-containing-ribonuclease	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	3.35139e-80
NZ_JWNH01000007.1\|WP_127281573.1\|8025_9327_+\|deoxyribodipyrimidine-photo-lyase	gnl\|CDD\|223492	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].	5.16835e-136
NZ_JWNH01000007.1\|WP_002216359.1\|7124_8036_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.21092e-70
NZ_JWNH01000007.1\|WP_002221574.1\|9721_11872_+\|ATP-dependent-DNA-helicase-DinG	gnl\|CDD\|236966	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional.	0
NZ_JWNH01000007.1\|WP_002227785.1\|26115_26400_+\|DUF2523-domain-containing-protein	gnl\|CDD\|371214	pfam10734, DUF2523, Protein of unknown function (DUF2523). This is a family of phage related proteins whose function is uncharacterized.	7.46268e-13
NZ_JWNH01000007.1\|WP_127281576.1\|14761_16132_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_JWNH01000007.1\|WP_164732513.1\|30336_32745_-\|LPS-assembly-protein-LptD	gnl\|CDD\|224369	COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane].	0
NZ_JWNH01000007.1\|WP_002216361.1\|6618_7017_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.7727e-20
NZ_JWNH01000007.1\|WP_127281579.1\|21313_22528_+\|Replication-initiation-factor-family-protein	gnl\|CDD\|225497	COG2946, COG2946, Putative phage replication protein RstA [DNA replication, recombination, and repair].	0

>NZ_JWNH01000007.1|WP_002221578.1|17144_19025_+|RNB-domain-containing-ribonuclease
MNIFYEESGQFKIAAIIQKNDATYQVDTQHGKRTKVKANNVFAEFDGDMAAFLENAQAQAADIDTDLLWEVCGEEEFSAEAIAEEYFGHAPTKTELAATLIALYAAPMYFYKKAKGVFKAAPEETLKQALAAIERKKQQDAQIDAWAEALKRGEMPSEIAADLKTILHAPDKQSLTYKAFTKAADALKISAYELAKKTGGITSIPQYLQDGFEIKYFPKGTGFPDLALPEMPDLPKADVTAFSIDDESTTEVDDALSLTDLDNGTKRVGIHIAAPSLAVKPGDKMEKNIMERLSTVYFPGGKITMLPENWIAAFSLDAGAHRPAVSIYFDVDSEFNTGEPTCKIEAVNISENLRIQAIEPHFNAEAGLDEAGEMMFAHHQDLIWFYQFAIALQKARGKYEPDRAPQYDYSIELDEEGNVSIVRRERGSPIDTLVSEMMILANSTWAQMLDENDLPGLFRVQPAGKVRMSTKSEPHIGMGVQHYGWFTSPLRRAADYINQKQLISLIDDTAEPLFQQSDAELFAALRDFDAAYTAYADFQRQMEAYWSLVYLQQQGTSELTATILKEDLVRIEGLPLVTRATGIPFDALPKSQALFKITELDAEKQFVSLNYIKAVAPAGTTAGNAV
>NZ_JWNH01000007.1|WP_002215682.1|16203_16836_-|TIGR00730-family-Rossman-fold-protein
MENTNRVPEQARYDAERRQADEALAGVFPAVSIFGSARTPQNHADYAFACRLARRLSDSGIAVISGGGPGIMEAANKGAFAGKSVSVGLNIVLPHEQKPNPYQDIALRFSRFAERKAVFFRYSQAYVVMPGGFGTLDELFEILTLVQTGKVPPRPIVLVGKAFWSGLAEWINAQLLARGLISEGAVSLFAISDDEDEIVAYLSEHGLQTA
>NZ_JWNH01000007.1|WP_127281576.1|14761_16132_-|adenylosuccinate-lyase
MINPIASLSPLDGRYAQSVEALRPIFSEYGLMKARVKVELNWLKALAAEPKIVEVPPFSAGTLAEIDTVIENFSLEDAAAVKAIEATTNHDVKAIEYWLKKRFAEVPEVAAVSEFIHFACTSEDINNLSHALMLQEAREAVLLPKLAEIIEKLTAMAHDLAAVPMMSRTHGQPATPTTLGKETANVVYRLQRQFKILQAQEFLGKINGAVGNYNAHMAAYPDVDWETHCHNFVEIGLGLTFNPYTIQIEPHDYMAEFFQTLSRINTILIDFNRDVWGYISLGYFKQKVKAGEVGSSTMPHKVNPIDFENSEGNLGMANAVLGFLAEKLPVSRWQRDLTDSTVLRNMGVGVGYAVLGFAAHLRGLNKLEPNPAALAADLDATWELLAEPIQTVMRRYGVANPYEKLKDLTRGKGGITPEVLKGFIGLLEIPAEAKAKLLELTPALYVGKAEALAKRI
>NZ_JWNH01000007.1|WP_127281575.1|12813_14682_-|acyltransferase
MQAVRYRPEIDGLRAVAVLSVIIFHLNNRWLPGGFLGVDIFFVISGFLITGIILSEIQNGSFSFRDFYTRRIKRIYPAFIAAVSLASVIASQIFLYEDFNQMRKTVELSAVFLSNIYLGFQQGYFDLSADENPVLHIWSLAVEEQYYLLYPLLLIFCCKKTKSLRVLRNISIILFLILTASSFLPSGFYTDILNQPNTYYLSTLRFPELLAGSLLAVYGQTENGEQQTANGKRQLVSLLSLSALLICLFVIDKHNPFIPGMTLLLPCLLTALLIRSMQYGTLPTRILSASPIVFVGKISYSLYLYHWIFISFAHYITGDKQLGLPAISVVAALTVGFSLLSYYLIEQPLRKRKMTFKKAFFCLYLAPSLILVGYNLYARGILKQEHLRPLHGAPLAAENHFPETVLTLGDSHAGHLRGFLDYVGSREGWKAKILSLDPECLVWVDTTLADNPLCRKYRDEVEKAEAVFIAQFYDLRMGGQPVPRFEAQSFLIPGFPARFRETVKRIAAVKPVYVFANNTSISRSPLREEKLKRFAINQYLRPIRVMGDIGKSNQAVFDLVKDIPNVHWVDAQKYLPKNTVEIHGRYLYGDQDHLTYFGSYYMGREFHKHESLLKHLHGNALQ
>NZ_JWNH01000007.1|WP_127281574.1|11908_12523_+|tellurite-resistance-TerB-family-protein
MNFTRLLNQVLSTVQKKGNTFSDSPLNSFGGGALVAGVASMLLNGKNRKTITKIGSTAALGYLAYRGYQMWQQNKGRATVTQSDFQPAGETEETYSRTVLRTMIAAAASDGMIDEAERRTIEQESGTDPETAAWLAAEYRLPASIEDIAAAVGNDEALAAEAYLAARLVCADLSRKETVFLARLSQALELDDNLVESLERQLGI
>NZ_JWNH01000007.1|WP_002221574.1|9721_11872_+|ATP-dependent-DNA-helicase-DinG
MLTDLEKNAIRDHYQNIGKNLPGFRPRASQREMIAAVANAFSRTLAREEGGEPPKREGESIAVIEGPTGVGKSLAYLLAGGIMAQTRGKRLIVSSATVALQEQLVDRDLPFLVEKSGLELTFALAKGRGRYLCPYKLYQLTQNNAQQNLLGFEAPEVLWDSKPKPEELKLLHDIADEFSARRFNGDRDTWPEKIDDAIWLKVTNDRHGCLKTACPNRPECPFYLARDVLETVDVVVANHDLLLADISMGGGVILPAPENSFYCIDEAHHLPKKALSRFAAEHSWNIAVWTLEKLPQLTGKIAALTDKAELANLADEAAASLLDSLHEWQFHLAEEPSLSLGPSENDRRTNSEPTWLWEDGKIPEGLETTVSNTAVAVRSLLKHVIGLNDALSAARREKEQDGALLDRLTGDFGIFIARIEQISAVWDLLSTVPLEGEEPLAKWITRRADDKNDYIFNASPISSASHLANSLWRRAAGAVLTSATLQSLGNFNLMLRQTGLQWLPETTTLALKSPFDFEKQGELYIPPIYASPKDPEAHTAAIIEWLPKLISPGEAIGTLVLFSSRKQMQDVALRLPGDYLPLLLVQGELPKAVLLQKHHRAIEEGKASIIFGLDSFAEGLDLPGTACVQVIIAKLPFAMPDNPIEKTQNRWIEQRGGNPFIEITVPEAGIKLIQAVGRLIRTEQDYGRVTILDNRVKTQRYGQQLLAGLPPFKRIG
>NZ_JWNH01000007.1|WP_002254441.1|9394_9565_-|hypothetical-protein
MLLYRLLGGAEIECGRCPVPPMTDWQHFLPAMGTVSAWVAVIWAYLIIESEKNGRY
>NZ_JWNH01000007.1|WP_127281573.1|8025_9327_+|deoxyribodipyrimidine-photo-lyase
MPSETARPLYADTCAAHTLVWFRQNLRIRDNAALCAAVAEGLPIIGIWIDDAETDNPRRAAFYRQSAAELAQGLAGRGIPLYTAASPAELVRLAVRLNIRTVIADESHTFADKLADNALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDLFAAYRHPSPETLPAPQPAALSDGIFLPQNGGETAAWRQWRRFLEQADSYSVLKDFPSRKNTSLMGAYLSAGCISSRLLARESLERRLNAWADNIIRRDFFLQLALQHADDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVDTHGYPAYPVAGIP
>NZ_JWNH01000007.1|WP_002216359.1|7124_8036_+|LysR-family-transcriptional-regulator
MDTLFSLKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYYRQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELILDNRHVDLIAEGVDLALRVSQTLSPSLIARPLAEIEFALLASPDFLRRNGVPETPEEVAGLPAVLPTYTNQQKLDLTRKSDGKKYRLELTPVIRTDNTLMMREMIKAGACIGYQPLWAAEHDLRCGTLVRLLPGYAVPTDRLNAVYADRAFLSAKVRSFIDFLNEKIASRKGCRNAV
>NZ_JWNH01000007.1|WP_002216361.1|6618_7017_-|DoxX-family-protein
MSDCCNRIQPVLLSVLRIVTAYLFLLHGTSKIFAFPIEMGSGSPGGLLLLAGILEIVGGILLVLGLFARPAAFVLSGQMAVAYFMAHASGNALFPIANGGESAVLFCFVFLYIAAAGGGAWSLDRLFFKRKA
>NZ_JWNH01000007.1|WP_127281579.1|21313_22528_+|Replication-initiation-factor-family-protein
MSEVEYFSHFISDGKGKLLEIPQRRGKQDGVFVDWISFTFHEDTLLKVSGCPLFSDAEYMYVLSRKLEEILGFGITRKCKSRGNKFYESMYRLGSDDVDYGEVHFGGQRNTVLVELKGTGCSVASPGWELRLKQFLDDSIRTRITRIDLALDFFDGEYTPDQALLDHDNGFFDNSNQRPKSETIGTAWRNEDGSGKTFYVGRKKNSRFVRVYEKGRQLGDKESKWVRFEIQFNYGDIEIPLDILINQGSYFCGAFPICRKFKNMPVPERFDQRKKTLNLTFEHKLHYAKNAVGKLVNFMIEMGFDNSEIVESLKADSGFPKGLEPEKYALEMLRDGLKHGFIHEQPDIDLEIELDELGVIAFKNSDKFDREKRLFSPDYDAEKERKYQDYLDEVYHQHVNYDYF
>NZ_JWNH01000007.1|WP_127281580.1|22539_22851_+|hypothetical-protein
MFNQNQTVTYPVTFLGAKKFKGEIDGSNIDTCSVLVATPLPAQSGNAVGFTAAQMKFGDSRNFSKLENLKYPCEVMVTVEMTSTGKGMVPSLIDFQVAEKPKG
>NZ_JWNH01000007.1|WP_002218476.1|22854_23055_+|hypothetical-protein
MKFEERFIVQDLETHDFIYPDPFGDVGFTQNIKSAGQFESYEDALNSGINEMGGGFQIFQFFVKSE
>NZ_JWNH01000007.1|WP_002212529.1|23292_23523_+|hypothetical-protein
MNIVKKYAVKALLAAGIFTPAIVMADGFDASAIGTQVANVIMGFVAMVSAVGMAAITVILAIQGFKMAWSMIKSVK
>NZ_JWNH01000007.1|WP_002223128.1|23550_23853_+|hypothetical-protein
MGYRVGINCFDTRLQADDYLLSSLPPTVTQDGKIIRPERVGDKWILNGKPVTLSYPECSNFEQIKQGSYVGSTVLILFVVIYGFRLLINFLKDIGKVGTD
>NZ_JWNH01000007.1|WP_164732512.1|24199_25813_+|T-cell/B-cell-stimulating-protein-TspB
MFIILGRNFLKIILCFSFFVSKFALASVNAPGKFDRVEVYDDGRYLGIRGSDDKRRRIWKGVFDRESGRYLTSEAQDLKVRHVSTGASSTGKVSSVVSSSVSRAGVLAGVGKLARLGAKLSTRAVPYVGTALLAHDVYETFKEDIQARGYQYDTETDKFVKGYEYSNCLWYEDKRRINRTYGCYGVDSSIMRLMSDDSRFPEVKELMESQMYRLARPFWNWHKEELNKLSSLDWNNFVLNSCTFDWNGGDCVVNKGDDYRNGADFSLIRNSKYKEEMDAKKLEEILSLKVDANPDKYIKETGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPNPNENPGTSPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPGRTNGRDGKDGGLLCKFFPDILACDRLPEPNPAEDLNLPSETVNVEFQKSGIFQDSAQCPAPVTFTVTVLDSSRQFAFSFENACTIAERLRYMLLALAWAVAAFFCIRTVSREV
>NZ_JWNH01000007.1|WP_002227785.1|26115_26400_+|DUF2523-domain-containing-protein
MKLLAALIPLLMSVAGRILTALGLMAVTYSGVDRLVAHFQQAITHSITGAPQAMLQLFYISGGGTVLNILFGAIAFILSFKQMTKLATSIGKKK
>NZ_JWNH01000007.1|WP_002212523.1|26400_27588_+|DUF2075-domain-containing-protein
MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGSKLLDQNLRTLVRKHYHIASNKMGMRTLLEWKICADDPVKMASSAFSSIYTLDKKVYDLYESAEVHTVNKVKRSKWFYTLPVIILLIPVFVGLSYKMLSSYGKKQEEPAAQESAATEHQAVFQDKTEGEPVNNGNLTADMFVPTLSEKPESKPIYNGVRQVRTFEYIAGCVEGGRTGCTCYSHQGTALKEITKEMCKDYARNGLPFNPYKEESQGRDVQQSEQHHSDRPQVATLGGKPWQNLMYDNWQERGKPFEGIGGGVVGSAN
>NZ_JWNH01000007.1|WP_002221953.1|27802_28759_+|IS110-family-transposase
MNIIGLDISKDTIDATLHKTNGSIHYIKFKNNDDGLKQFRLWIKGNRIRKAYIGMEATGIYYEKAADMLSSYYTVYVINPLKIKDYGKSRFNRTKTDKADSNLIADYIKRHQDTLIPYQIPKNKALQKLINLKNQLHQHQKQIKNRLHSTEEDFIRNIHQDLIDTIQDKMEQVKIAISEQIKKQTDNNHYRNLQTIPSIGKDTASVLYAQLTEKHFKTANQFVSYAGLSPAIIQSGTSVRGRGRLSRYGNRRLKSTLYMPALCAYRFNAFPKLINNLKKAGKPKMVIIVAIMRKLAKLAYYIVKTGQPYDAERHRLNQ
>NZ_JWNH01000007.1|WP_164732513.1|30336_32745_-|LPS-assembly-protein-LptD
MARLFSLKPLVLALGLCFGTHCAAADAVAAEETDNPTAGGSVRSVSEPIQPTSLSLGSTCLFCSNESGSPERTEAAVRGSGEASIPEDYTRIVADKVEGQSQVQVRAEGNVVVERNRTTLNTDWADYDQSGDTVTAGDRFALQQDGTLIRGETLTYNLEQQTGEAHNVRMETEQGGRRLQSVSRTAEMLGEGHYKLTETQFNTCSAGDAGWYVKAASVEADREKGIGVAKHAAFVFGGVPIFYTPWADFPLDGNRKSGLLVPSLSTGSDGISLSVPYYFNLAPNFDATFAPGIIGERGAMFDGQIRYLRPDYSGQADLAWLPHDKKSGRNNRYQAKWQHRHDISDTLQAGVDFNQVSDSGYYRDFYGSEEIAGNVNLNRQVWLDYSGKVAGGILNVGLSAQKFQTLANQSGYKDKPYALMPRLSADWHKNAGRAQIGVSAQFTRFSHDSRQDGSRLVVYPDIKWDFSNSWGYVRPKLGLHATYYSLNRFGSQEARRVSRTLPIVNIDSGATFERNTRLFGGEVLQTLEPRLFYNYIPTKSQNDLPNFDSSENSFGYGQLFRENLYYGNDRINAANSLSAAVQSRILDNATGEERFRAGIGQKFYFKDDAVMLDGSVGKNPRNRSDWVAFASGSIGSRFILDSSIHYNQNDKRAENYAVGASYRPAQGKVLNARYKYGRNEKIYLKSDGSYFYDKLSQLDLSAQWPLTRNLSAVVRYNYGFEAKKPIEMLAGAEYKSSCGCWGAGVYAQRYVTGENTYKNAVFFSLQLKDLSSVGRNPADRMDVAVPGYIPAHSLSAGRNKRP

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Crispr_ID: NZ_JWNH01000007_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JWNH01000007_2

29890-30097

Orphan

Consensus_repeat	Method
GGCAACTTTGGCAACTTTGGCAACTTTGGCAACTTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_JWNH01000007_2

>merge|NZ_JWNH01000007|2|29890-30097|CRISPRCasFinder
CGCCGTGGCGGCAACTTTGGCAACTTTGGCAACTTTGGCAACTTTGGCAACTTTGGCAACTTTGGCAACTTTGGCAACTTTGGCAACTTTGGCAACTTTGGCAACTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTGGCAGCTTTGGCAGCTTTGGCAGCTTT

>NZ_JWNH01000007|2|2|29890-30097|CRISPRCasFinder
CGCCGTGGCGGCAACTTTGGCAACTTTGGCAACTTT	GGCAACTTTGGCAACTTTGGCAACTTT
GGCAACTTTGGCAACTTTGGCAACTTTGGCAACTTT	GGCAACTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCTTTGGCAGCTTTGGCAGCTTTGGCAGCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_JWNH01000007.1\|WP_002221953.1\|27802_28759_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_JWNH01000007.1\|WP_127281580.1\|22539_22851_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000007.1\|WP_002221929.1\|38525_40826_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
NZ_JWNH01000007.1\|WP_164732512.1\|24199_25813_+\|T-cell/B-cell-stimulating-protein-TspB	unknown	unknown	gnl\|CDD\|283306
NZ_JWNH01000007.1\|WP_002212529.1\|23292_23523_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000007.1\|WP_002223128.1\|23550_23853_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000007.1\|WP_002212523.1\|26400_27588_+\|DUF2075-domain-containing-protein	unknown	unknown	gnl\|CDD\|283385
NZ_JWNH01000007.1\|WP_002221578.1\|17144_19025_+\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|223631
NZ_JWNH01000007.1\|WP_002221927.1\|42181_42970_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273953
NZ_JWNH01000007.1\|WP_002223343.1\|33875_34574_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NZ_JWNH01000007.1\|WP_127281584.1\|36671_37628_+\|YheT-family-hydrolase	unknown	unknown	gnl\|CDD\|223506
NZ_JWNH01000007.1\|WP_002221934.1\|32814_33819_+\|phosphotransferase	unknown	unknown	gnl\|CDD\|225719
NZ_JWNH01000007.1\|WP_002221589.1\|40967_41393_-\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000007.1\|WP_077143075.1\|34600_34792_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000007.1\|WP_127281583.1\|35030_36569_+\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|223800
NZ_JWNH01000007.1\|WP_002227785.1\|26115_26400_+\|DUF2523-domain-containing-protein	unknown	unknown	gnl\|CDD\|371214
NZ_JWNH01000007.1\|WP_127281579.1\|21313_22528_+\|Replication-initiation-factor-family-protein	unknown	unknown	gnl\|CDD\|225497
NZ_JWNH01000007.1\|WP_002221930.1\|37678_38461_+\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710
NZ_JWNH01000007.1\|WP_164732513.1\|30336_32745_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|224369
NZ_JWNH01000007.1\|WP_002218476.1\|22854_23055_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_JWNH01000007.1\|WP_002221929.1\|38525_40826_+\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_JWNH01000007.1\|WP_164732512.1\|24199_25813_+\|T-cell/B-cell-stimulating-protein-TspB	gnl\|CDD\|283306	pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein. This family consists of several Neisseria meningitidis TspB virulence factor proteins.	0
NZ_JWNH01000007.1\|WP_002221927.1\|42181_42970_-\|hypothetical-protein	gnl\|CDD\|273953	TIGR02072, Malonyl-_O-methyltransferase, malonyl-acyl carrier protein O-methyltransferase BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, carries out an enzymatic step prior to the formation of pimeloyl-CoA, namely O-methylation of the malonyl group preferentially while on acyl carrier protein. The enzyme is recognizable as a methyltransferase by homology. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	4.56413e-08
NZ_JWNH01000007.1\|WP_127281579.1\|21313_22528_+\|Replication-initiation-factor-family-protein	gnl\|CDD\|225497	COG2946, COG2946, Putative phage replication protein RstA [DNA replication, recombination, and repair].	0
NZ_JWNH01000007.1\|WP_002212523.1\|26400_27588_+\|DUF2075-domain-containing-protein	gnl\|CDD\|283385	pfam05707, Zot, Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.	1.45872e-23
NZ_JWNH01000007.1\|WP_002221578.1\|17144_19025_+\|RNB-domain-containing-ribonuclease	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	3.35139e-80
NZ_JWNH01000007.1\|WP_127281584.1\|36671_37628_+\|YheT-family-hydrolase	gnl\|CDD\|223506	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only].	2.99121e-129
NZ_JWNH01000007.1\|WP_002221934.1\|32814_33819_+\|phosphotransferase	gnl\|CDD\|225719	COG3178, COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only].	2.54854e-148
NZ_JWNH01000007.1\|WP_127281583.1\|35030_36569_+\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|223800	COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only].	7.47128e-180
NZ_JWNH01000007.1\|WP_002227785.1\|26115_26400_+\|DUF2523-domain-containing-protein	gnl\|CDD\|371214	pfam10734, DUF2523, Protein of unknown function (DUF2523). This is a family of phage related proteins whose function is uncharacterized.	7.46268e-13
NZ_JWNH01000007.1\|WP_002221953.1\|27802_28759_+\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.93582e-33
NZ_JWNH01000007.1\|WP_002221930.1\|37678_38461_+\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	3.00782e-141
NZ_JWNH01000007.1\|WP_164732513.1\|30336_32745_-\|LPS-assembly-protein-LptD	gnl\|CDD\|224369	COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane].	0
NZ_JWNH01000007.1\|WP_002223343.1\|33875_34574_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	3.031e-47

>NZ_JWNH01000007.1|WP_002221953.1|27802_28759_+|IS110-family-transposase
MNIIGLDISKDTIDATLHKTNGSIHYIKFKNNDDGLKQFRLWIKGNRIRKAYIGMEATGIYYEKAADMLSSYYTVYVINPLKIKDYGKSRFNRTKTDKADSNLIADYIKRHQDTLIPYQIPKNKALQKLINLKNQLHQHQKQIKNRLHSTEEDFIRNIHQDLIDTIQDKMEQVKIAISEQIKKQTDNNHYRNLQTIPSIGKDTASVLYAQLTEKHFKTANQFVSYAGLSPAIIQSGTSVRGRGRLSRYGNRRLKSTLYMPALCAYRFNAFPKLINNLKKAGKPKMVIIVAIMRKLAKLAYYIVKTGQPYDAERHRLNQ
>NZ_JWNH01000007.1|WP_002212523.1|26400_27588_+|DUF2075-domain-containing-protein
MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGSKLLDQNLRTLVRKHYHIASNKMGMRTLLEWKICADDPVKMASSAFSSIYTLDKKVYDLYESAEVHTVNKVKRSKWFYTLPVIILLIPVFVGLSYKMLSSYGKKQEEPAAQESAATEHQAVFQDKTEGEPVNNGNLTADMFVPTLSEKPESKPIYNGVRQVRTFEYIAGCVEGGRTGCTCYSHQGTALKEITKEMCKDYARNGLPFNPYKEESQGRDVQQSEQHHSDRPQVATLGGKPWQNLMYDNWQERGKPFEGIGGGVVGSAN
>NZ_JWNH01000007.1|WP_002227785.1|26115_26400_+|DUF2523-domain-containing-protein
MKLLAALIPLLMSVAGRILTALGLMAVTYSGVDRLVAHFQQAITHSITGAPQAMLQLFYISGGGTVLNILFGAIAFILSFKQMTKLATSIGKKK
>NZ_JWNH01000007.1|WP_164732512.1|24199_25813_+|T-cell/B-cell-stimulating-protein-TspB
MFIILGRNFLKIILCFSFFVSKFALASVNAPGKFDRVEVYDDGRYLGIRGSDDKRRRIWKGVFDRESGRYLTSEAQDLKVRHVSTGASSTGKVSSVVSSSVSRAGVLAGVGKLARLGAKLSTRAVPYVGTALLAHDVYETFKEDIQARGYQYDTETDKFVKGYEYSNCLWYEDKRRINRTYGCYGVDSSIMRLMSDDSRFPEVKELMESQMYRLARPFWNWHKEELNKLSSLDWNNFVLNSCTFDWNGGDCVVNKGDDYRNGADFSLIRNSKYKEEMDAKKLEEILSLKVDANPDKYIKETGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPNPNENPGTSPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPGRTNGRDGKDGGLLCKFFPDILACDRLPEPNPAEDLNLPSETVNVEFQKSGIFQDSAQCPAPVTFTVTVLDSSRQFAFSFENACTIAERLRYMLLALAWAVAAFFCIRTVSREV
>NZ_JWNH01000007.1|WP_002223128.1|23550_23853_+|hypothetical-protein
MGYRVGINCFDTRLQADDYLLSSLPPTVTQDGKIIRPERVGDKWILNGKPVTLSYPECSNFEQIKQGSYVGSTVLILFVVIYGFRLLINFLKDIGKVGTD
>NZ_JWNH01000007.1|WP_002212529.1|23292_23523_+|hypothetical-protein
MNIVKKYAVKALLAAGIFTPAIVMADGFDASAIGTQVANVIMGFVAMVSAVGMAAITVILAIQGFKMAWSMIKSVK
>NZ_JWNH01000007.1|WP_002218476.1|22854_23055_+|hypothetical-protein
MKFEERFIVQDLETHDFIYPDPFGDVGFTQNIKSAGQFESYEDALNSGINEMGGGFQIFQFFVKSE
>NZ_JWNH01000007.1|WP_127281580.1|22539_22851_+|hypothetical-protein
MFNQNQTVTYPVTFLGAKKFKGEIDGSNIDTCSVLVATPLPAQSGNAVGFTAAQMKFGDSRNFSKLENLKYPCEVMVTVEMTSTGKGMVPSLIDFQVAEKPKG
>NZ_JWNH01000007.1|WP_127281579.1|21313_22528_+|Replication-initiation-factor-family-protein
MSEVEYFSHFISDGKGKLLEIPQRRGKQDGVFVDWISFTFHEDTLLKVSGCPLFSDAEYMYVLSRKLEEILGFGITRKCKSRGNKFYESMYRLGSDDVDYGEVHFGGQRNTVLVELKGTGCSVASPGWELRLKQFLDDSIRTRITRIDLALDFFDGEYTPDQALLDHDNGFFDNSNQRPKSETIGTAWRNEDGSGKTFYVGRKKNSRFVRVYEKGRQLGDKESKWVRFEIQFNYGDIEIPLDILINQGSYFCGAFPICRKFKNMPVPERFDQRKKTLNLTFEHKLHYAKNAVGKLVNFMIEMGFDNSEIVESLKADSGFPKGLEPEKYALEMLRDGLKHGFIHEQPDIDLEIELDELGVIAFKNSDKFDREKRLFSPDYDAEKERKYQDYLDEVYHQHVNYDYF
>NZ_JWNH01000007.1|WP_002221578.1|17144_19025_+|RNB-domain-containing-ribonuclease
MNIFYEESGQFKIAAIIQKNDATYQVDTQHGKRTKVKANNVFAEFDGDMAAFLENAQAQAADIDTDLLWEVCGEEEFSAEAIAEEYFGHAPTKTELAATLIALYAAPMYFYKKAKGVFKAAPEETLKQALAAIERKKQQDAQIDAWAEALKRGEMPSEIAADLKTILHAPDKQSLTYKAFTKAADALKISAYELAKKTGGITSIPQYLQDGFEIKYFPKGTGFPDLALPEMPDLPKADVTAFSIDDESTTEVDDALSLTDLDNGTKRVGIHIAAPSLAVKPGDKMEKNIMERLSTVYFPGGKITMLPENWIAAFSLDAGAHRPAVSIYFDVDSEFNTGEPTCKIEAVNISENLRIQAIEPHFNAEAGLDEAGEMMFAHHQDLIWFYQFAIALQKARGKYEPDRAPQYDYSIELDEEGNVSIVRRERGSPIDTLVSEMMILANSTWAQMLDENDLPGLFRVQPAGKVRMSTKSEPHIGMGVQHYGWFTSPLRRAADYINQKQLISLIDDTAEPLFQQSDAELFAALRDFDAAYTAYADFQRQMEAYWSLVYLQQQGTSELTATILKEDLVRIEGLPLVTRATGIPFDALPKSQALFKITELDAEKQFVSLNYIKAVAPAGTTAGNAV
>NZ_JWNH01000007.1|WP_164732513.1|30336_32745_-|LPS-assembly-protein-LptD
MARLFSLKPLVLALGLCFGTHCAAADAVAAEETDNPTAGGSVRSVSEPIQPTSLSLGSTCLFCSNESGSPERTEAAVRGSGEASIPEDYTRIVADKVEGQSQVQVRAEGNVVVERNRTTLNTDWADYDQSGDTVTAGDRFALQQDGTLIRGETLTYNLEQQTGEAHNVRMETEQGGRRLQSVSRTAEMLGEGHYKLTETQFNTCSAGDAGWYVKAASVEADREKGIGVAKHAAFVFGGVPIFYTPWADFPLDGNRKSGLLVPSLSTGSDGISLSVPYYFNLAPNFDATFAPGIIGERGAMFDGQIRYLRPDYSGQADLAWLPHDKKSGRNNRYQAKWQHRHDISDTLQAGVDFNQVSDSGYYRDFYGSEEIAGNVNLNRQVWLDYSGKVAGGILNVGLSAQKFQTLANQSGYKDKPYALMPRLSADWHKNAGRAQIGVSAQFTRFSHDSRQDGSRLVVYPDIKWDFSNSWGYVRPKLGLHATYYSLNRFGSQEARRVSRTLPIVNIDSGATFERNTRLFGGEVLQTLEPRLFYNYIPTKSQNDLPNFDSSENSFGYGQLFRENLYYGNDRINAANSLSAAVQSRILDNATGEERFRAGIGQKFYFKDDAVMLDGSVGKNPRNRSDWVAFASGSIGSRFILDSSIHYNQNDKRAENYAVGASYRPAQGKVLNARYKYGRNEKIYLKSDGSYFYDKLSQLDLSAQWPLTRNLSAVVRYNYGFEAKKPIEMLAGAEYKSSCGCWGAGVYAQRYVTGENTYKNAVFFSLQLKDLSSVGRNPADRMDVAVPGYIPAHSLSAGRNKRP
>NZ_JWNH01000007.1|WP_002221934.1|32814_33819_+|phosphotransferase
MQRQIKLKNWLQTVYPERDFDLTFAAADADFRRYFRATFSDGSSVVCMDAPPDKMSVAPYLKVQKLFDMVNVPQVLHADTDLGFVVLNDFGNTTFLTAMLQEQGETAHKALLLEAIGELVELQKASREGVLPEYDRETMLREINLFPEWFVAKELGRELTFKQRQLWQQTVDTLLPPLLAQPKVYVHRDFIVRNLMLTRGRPGVLDFQDALYGPISYDLVSLLRDAFIEWEEEFVLDLVIRYWEKARAAGLPVPEAFDEFYRWFEWMGVQRHLKVAGIFARLYYRDGKDKYRPEIPRFLNYLHRVSRRYAELAPLYALLVELVGDEELETGFTF
>NZ_JWNH01000007.1|WP_002223343.1|33875_34574_-|thiol:disulfide-interchange-protein-DsbA/DsbL
MKSRQLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLPLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ
>NZ_JWNH01000007.1|WP_077143075.1|34600_34792_+|hypothetical-protein
MLEINRNPAILLHFRVLIQFAAGKGRFRFGKPLQTASNPMPSEAVSVVQYAPSPRTGTTVGEQ
>NZ_JWNH01000007.1|WP_127281583.1|35030_36569_+|murein-biosynthesis-integral-membrane-protein-MurJ
MNMLGALAKVGSLTMVSRVLGFVRDTVIARAFGVGMATDAFFVAFKLPNLLRRVFAEGAFAQAFVPILAEYKETRSKEATEAFIRHVAGMLSFVLVIVTALGILAAPWVIYVSAPGFAKDADKFQLSIDLLRITFPYILLISLSSFVGSVLNSYHKFSIPAFTPTFLNVSFIVFALFFVPYFDPPVTALAWAVFVGGILQLGFQLPWLAKLGFLKLPKLNFKDAAVNRVMKQMAPAILGVSVAQISLVINTIFASYLQSGSVSWMYYADRMMELPGGVLGAALGTILLPTLSKHSANQDTEQFSALLDWGLRLCMLLTLPAAVGLAVLSFPLVATLFMYREFTLFDAQMTQHALIAYSFGLIGLIMIKVLAPGFYARQNIKTPVKIAIFTLICTQLMNLAFIGPLKHVGLSLAIGLGACINAGLLFYLLRRHGIYQPGKGWAAFLAKMLLALAVMGGGLWAAQAYLPFEWVRVGGMRKAGQLCILIAVGGGLYFASLAALGFRPRHFKRVES
>NZ_JWNH01000007.1|WP_127281584.1|36671_37628_+|YheT-family-hydrolase
MILTPPDTPFFLRNGNANTIAAKFLQRPAPAYRRELLPDSTGKTKVAYDFSDGISPDAPLVVLFHGLEGSSRSHYAVELMLAVRDRGWHGVVVHFRSCGGIANTAPVFYHLGDTAEIAFTLDTFAARYREIYAVGVSLGGNALAKYLGEQGKKALPQAAAVISAPVDAEAAGRRFDSGITRLLYTRYFLRTLIPKAKSLQGFQTAFAAGCKTLGEFDDRFTAPLHGFADRHDYYRQTSCKPLLKHVAKPLLLLNAVNDPFLPPEALPRADEVSEAVTLFQPAYGGHVGFVSSTGGRLHLQWLPQTVLSYFDSFRTNRR
>NZ_JWNH01000007.1|WP_002221930.1|37678_38461_+|indole-3-glycerol-phosphate-synthase-TrpC
MTDILNKILATKAQEVAAQKAAVNAEHIRTLAAEAAPVRSFIDSIRGKHRLNLPAVIAEIKKASPSKGLIRPDFRPAEIARAYENAGAACLSVLTDEPYFQGSPEYLKQAREAVSLPVLRKDFIIDEYQVYQARAWGADAVLLIAAALEQEQLERFEAVAHELGMTVLLELHDETELEKCRNLTTPLWGVNNRNLRTFEVSLDQTLSLLPALEGKTVVTESGITGKADVEFMQSRGVHTFLIGETFMRADDIEAEVGKLF
>NZ_JWNH01000007.1|WP_002221929.1|38525_40826_+|DNA-helicase-RecQ
MHRPTAKQILHEVFGYPEFRGRQEAVINTLAGGGSLTVLMPTGGGKSLCYQIPALMREGVAVVVSPLIALMNDQVANLHAAGIEAAAVNSGTSADEAREIADRLAQGRLKLLYVAPERLVTDRFLRFLDQQTVSLFAIDEAHCVSQWGHDFRPEYQQLGMLAERYPNVPRIALTATADAATRADIKHYLHLDDAPEFVSSFDRPNIYYQVIEKNNGKKQLLDFIRKEMTGQSGIVYCLSRKKVEDVAQFLRENGLNAIPYHAGLSMDVREENQRRFTHEDNIIVVATVAFGMGIDKPDVRFVAHLDMPQSVEHFYQESGRAGRDGLPAASWLCYGLNDWVLLRERIAEGNSDEVQKQIEMQKLDAMLAVCETAACRRVLLLKHFGEASEPCGHCDNCLHPPVRFDGTVLVQKLLSCVYRAGQRFAAGYITNILRGKSDDWIRGNRHEQLSTFGIGTELSDKEWRSVIRQCISLGYLTVNITRYQALQLTEAAKKVLKGETEVMLRPLKRDKPAARTLKDNWLRTEREERLWQALRVWRMKQAEAEGIPAYMIFGDKTLRDLVEKMPQDLNGLHDIYGLGEAKIDRFGHGILEVCRNAAGFSRDAVIRPQTEREQQLRQKLEAWRYEQARAENCALHAVLSDESLADMLADTPETETDLEGVYGLGSVRAAKYGRDILAVCRPFSDGIDETAKRKRRLMRALIQWCGETAKHEQSEPYRILSKAALRAIAAKQPEGLAELAAVYGVGEEKAARYGAAVLAVLERNAV
>NZ_JWNH01000007.1|WP_002221589.1|40967_41393_-|hypothetical-protein
MYWERGLHMYKASAVVPTGYVRVGNTAPLVGEDTQRYASFWGDGYDVYRQLRWQQIPEKQRKAFKKAAKSKKTVMFAGREYGISKQNLSDVWDDFEDAMELKAFPCLSSLFLTKWHKNLYDSGLTKTSTALPRLSSKRTIL
>NZ_JWNH01000007.1|WP_002221927.1|42181_42970_-|hypothetical-protein
MNPQDKCWQVHRHLAEYADQRLTLVRNAPKYILLAGADADISRSLLAKRYPQAVFEEYDSRADFLAAAAAARKGGFWQRFTGKGVVQHCQSPIAPLPEACADMLWSNLGLLAAEQILPVLHNWARALKTDGLLFFTCFGRDTFTELKCRLKENGIESRSVMFPDMHDLGDMLAENGFYDPVTDTAKLVLDYKKAETFWADMDTLGVWRAMAWNDENAARSCVGTIFEREGGLGITLETVYGHAVKKLMLPQGENVVQFFPKR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_JWNH01000007_2	2.1\|29926\|27\|NZ_JWNH01000007\|CRISPRCasFinder	29926-29952	27	MN850587	Escherichia phage mistaenkt, complete genome	12272-12298	2	0.926
NZ_JWNH01000007_2	2.1\|29926\|27\|NZ_JWNH01000007\|CRISPRCasFinder	29926-29952	27	MN850587	Escherichia phage mistaenkt, complete genome	12263-12289	3	0.889
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	748041-748069	4	0.862
NZ_JWNH01000007_2	2.1\|29926\|27\|NZ_JWNH01000007\|CRISPRCasFinder	29926-29952	27	MN693680	Marine virus AFVG_250M653, complete genome	16786-16812	4	0.852
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	85917-85945	5	0.828
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	107806-107834	5	0.828
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	456119-456147	5	0.828
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	473742-473770	5	0.828
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	84056-84084	5	0.828
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	101875-101903	5	0.828
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	306836-306864	5	0.828
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	58018-58046	5	0.828
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	365563-365591	5	0.828
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	624557-624585	5	0.828
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	861517-861545	5	0.828
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1741801-1741829	5	0.828
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1328784-1328812	5	0.828
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	339480-339508	5	0.828
NZ_JWNH01000007_2	2.1\|29926\|27\|NZ_JWNH01000007\|CRISPRCasFinder	29926-29952	27	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	662992-663018	5	0.815
NZ_JWNH01000007_2	2.1\|29926\|27\|NZ_JWNH01000007\|CRISPRCasFinder	29926-29952	27	NZ_CP047261	Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326F, complete sequence	290453-290479	5	0.815
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	161433-161461	6	0.793
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	468489-468517	6	0.793
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	624493-624521	6	0.793
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	347827-347855	6	0.793
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	428157-428185	6	0.793
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1011611-1011639	6	0.793
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP019045	Halioglobus pacificus strain RR3-57 plasmid pRR3-57, complete sequence	140523-140551	6	0.793
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_LR134417	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 8	104885-104913	6	0.793
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1009433-1009461	6	0.793
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	833488-833516	6	0.793
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	781058-781086	6	0.793
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1512874-1512902	6	0.793
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1512818-1512846	6	0.793
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	357881-357909	6	0.793
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1000427-1000455	6	0.793
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	747977-748005	7	0.759
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	352492-352520	7	0.759
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	715171-715199	7	0.759
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NC_016108	Methylomicrobium alcaliphilum 20Z plasmid MEALZ_p, complete sequence	1776-1804	7	0.759
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	13254-13282	8	0.724
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1624687-1624715	8	0.724
NZ_JWNH01000007_1	1.1\|20318\|29\|NZ_JWNH01000007\|CRISPRCasFinder	20318-20346	29	NZ_CP050093	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence	171172-171200	8	0.724

1. spacer 2.1|29926|27|NZ_JWNH01000007|CRISPRCasFinder matches to MN850587 (Escherichia phage mistaenkt, complete genome) position: , mismatch: 2, identity: 0.926

ggcaactttggcaactttggcaacttt	CRISPR spacer
ggcaactttggcaactttggcaactgg	Protospacer
*************************

2. spacer 2.1|29926|27|NZ_JWNH01000007|CRISPRCasFinder matches to MN850587 (Escherichia phage mistaenkt, complete genome) position: , mismatch: 3, identity: 0.889

ggcaactttggcaactttggcaacttt	CRISPR spacer
aacagctttggcaactttggcaacttt	Protospacer
..**.**********************

3. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 4, identity: 0.862

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cggccgtcattcccgcgcaggcgggaatc	Protospacer
  *******************.******

4. spacer 2.1|29926|27|NZ_JWNH01000007|CRISPRCasFinder matches to MN693680 (Marine virus AFVG_250M653, complete genome) position: , mismatch: 4, identity: 0.852

ggcaactttggcaactttggcaacttt	CRISPR spacer
ggcaactttggcaacatgggcaacgtc	Protospacer
*************** * ****** *.

5. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 5, identity: 0.828

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cggccgtcattcccgcgaaggcgggaatc	Protospacer
  *************** ***.******

6. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 5, identity: 0.828

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cggccgtcattcccgcgaaggcgggaatc	Protospacer
  *************** ***.******

7. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 5, identity: 0.828

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
tggccgtcattcccgcgaaggcgggaatc	Protospacer
  *************** ***.******

8. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 5, identity: 0.828

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cggccgtcattcccgcgaaggcgggaatc	Protospacer
  *************** ***.******

9. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 5, identity: 0.828

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cggccgtcattcccgcgaaggcgggaatc	Protospacer
  *************** ***.******

10. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 5, identity: 0.828

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cggccgtcattcccgcgaaggcgggaatc	Protospacer
  *************** ***.******

11. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.828

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
aagccgtcattcccgcgaaggcgggaatc	Protospacer
. *************** ***.******

12. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 5, identity: 0.828

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cggccgtcattcccgcgaaggcgggaatc	Protospacer
  *************** ***.******

13. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 5, identity: 0.828

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cggccgtcattcccgcgaaggcgggaatc	Protospacer
  *************** ***.******

14. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 5, identity: 0.828

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cggccgtcattcccgcgaaggcgggaatc	Protospacer
  *************** ***.******

15. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 5, identity: 0.828

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cggccgtcattcccgcgaaggcgggaatc	Protospacer
  *************** ***.******

16. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 5, identity: 0.828

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
gcgccgtcattcccgcgaaggcggcattc	Protospacer
***************** ***.** * *

17. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 5, identity: 0.828

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cctccgtcattcccgcgaaggcgggaatc	Protospacer
 * ************** ***.******

18. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 5, identity: 0.828

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
tccccgtcattcccgcgaaggcgggaatc	Protospacer
 * ************** ***.******

19. spacer 2.1|29926|27|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

ggcaactttggcaactttggcaacttt	CRISPR spacer
ggcaacgttggcaacgttggcaacgcc	Protospacer
****** ******** ******** ..

20. spacer 2.1|29926|27|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP047261 (Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326F, complete sequence) position: , mismatch: 5, identity: 0.815

ggcaactttggcaactttggcaacttt	CRISPR spacer
atcacctttggcaaccttggcaactat	Protospacer
. ** **********.********* *

21. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 6, identity: 0.793

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cgaccgtcattcccgcgaaggcgggaatc	Protospacer
  .************** ***.******

22. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 6, identity: 0.793

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
aacccgtcattcccgcgaaggcgggaatc	Protospacer
.  ************** ***.******

23. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 6, identity: 0.793

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cgcccgtcattcccgcgaaggcgggaatc	Protospacer
   ************** ***.******

24. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 6, identity: 0.793

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cggccgtcattcccgcgaaggcgggactc	Protospacer
  *************** ***.**** *

25. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 6, identity: 0.793

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
gacccgtcattcccgcgaaggcgggaacc	Protospacer
*  ************** ***.*****.

26. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 6, identity: 0.793

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
tcgttgtcattcccgcgcaggcgggaacc	Protospacer
 **..****************.*****.

27. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP019045 (Halioglobus pacificus strain RR3-57 plasmid pRR3-57, complete sequence) position: , mismatch: 6, identity: 0.793

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
ttcccgtcattcccgcgaaggcgggaatc	Protospacer
 . ************** ***.******

28. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_LR134417 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 8) position: , mismatch: 6, identity: 0.793

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
aatctgtcattcccgcgtaggtgggaatg	Protospacer
.  *.************.**********.

29. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
ccgccggccttcccgcgcaggtggcgatc	Protospacer
 ***** * *************** .**

30. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
ccgccggccttcccgcgcaggtggcgatc	Protospacer
 ***** * *************** .**

31. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 6, identity: 0.793

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cccccgtcattcccgcgaaggcgggactc	Protospacer
 * ************** ***.**** *

32. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.793

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
ccgccggccttcccgcgcaggtggcgatc	Protospacer
 ***** * *************** .**

33. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
ccgccggccttcccgcgcaggtggcgatc	Protospacer
 ***** * *************** .**

34. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
gggatgacattcccgcgcaggcgggaatc	Protospacer
* * .* **************.******

35. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.793

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
ccgccggccttcccgcgcaggtggcgatc	Protospacer
 ***** * *************** .**

36. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.759

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cggccgtcatccccgcgcaggcggggaac	Protospacer
  ********.**********.***.*

37. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 7, identity: 0.759

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
atcccgtcattcccgcgaaggcgggaacc	Protospacer
.. ************** ***.*****.

38. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 7, identity: 0.759

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
ttcccgtcattcccgcgaaggcgggaacc	Protospacer
 . ************** ***.*****.

39. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NC_016108 (Methylomicrobium alcaliphilum 20Z plasmid MEALZ_p, complete sequence) position: , mismatch: 7, identity: 0.759

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
agatcgtcatccccgcgcaggcgggaatc	Protospacer
. ..******.**********.******

40. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 8, identity: 0.724

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
aactagtcatccccgcgcaggcgggaatc	Protospacer
.  . *****.**********.******

41. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 8, identity: 0.724

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
ttatcgtcattcccgcgaaggcgggaacc	Protospacer
 ...************* ***.*****.

42. spacer 1.1|20318|29|NZ_JWNH01000007|CRISPRCasFinder matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 8, identity: 0.724

gcgccgtcattcccgcgcaggtgggaata	CRISPR spacer
cggccgtctttcccgcgcaggtgtatcca	Protospacer
  ****** ************** .  .*

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

9. NZ_JWNH01000002

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

10. NZ_JWNH01000053

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CRISPR-Cas detection and classification

Crispr_ID: NZ_JWNH01000053_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JWNH01000053_1

3888-4069

Orphan

I-E

Consensus_repeat	Method
CGTCATTCCCGCTCAGGCGGGAATC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_JWNH01000053_1

>merge|NZ_JWNH01000053|1|3888-4069|CRISPRCasFinder
CGTCATTCCCGCTCAGGCGGGAATCTAGAACCCAACACGGTAAAAATTTATCCGAAGCGACAACAATCTTTTCATCGTCATTCCCGCGCAGGCGGGAATCCAGAACGTAAAATCTCAAGAAACCGTTTTTCCCGACAAGTTTCTGTGCCGACAAACCTAGATTCCCGCCTGCGCGGGAATGA

>NZ_JWNH01000053|1|1|3888-4069|CRISPRCasFinder
CGTCATTCCCGCTCAGGCGGGAATC	TAGAACCCAACACGGTAAAAATTTATCCGAAGCGACAACAATCTTTTCAT
CGTCATTCCCGCGCAGGCGGGAATC	CAGAACGTAAAATCTCAAGAAACCGTTTTTCCCGACAAGTTTCTGTGCCGACAAAC
CTAGATTCCCGCCTGCGCGGGAATGA

>NZ_JWNH01000053.1|WP_002219342.1|2832_3651_-|adhesin-Opc
MKKTVFTYAMIALTGTAAAAQELQTANEFTVHTDLSSISSTRAFLKEKHKAAKHIGVRADIPFDASQGIRLEAGFGRSKKNIINLETDENKLGKTKNVKLPTGVPENRIDLYTGYTYTQTLSDSLNFRVGAGLGFESSKDSIKTTKHTLHSSRQSWSAKVHADLLSQLGNGWYINPWSEVKFDLKSRYKLNTGVTSLKKDINQKTNGWGFGLGANIGKKLGESASIEAGPFYKQRTYKESGEFSVTTTSGDVSLTIPKTSIREYGLRVGIKF
>NZ_JWNH01000053.1|WP_002219343.1|2025_2670_-|DedA-family-protein
MLASAIDFILHIDQHLLALSAQYGVWIYAILFLIVFCETGLIVTPLLPGDSLLFAAGGIAALGGMDIHLMVALLSLAAILGDALNFTVGKYFGGRLFANPDSKIFRREYLDKTHRFYEKHGGKTIIIARFMPIVRTFAPFVAGMGKMHYAKFIRYNIIGGLLWVILFSYAGYFFANFPVVKNNLGLVMGGIIIVSVLPGAVEIARAKLAVKSKR
>NZ_JWNH01000053.1|WP_002219344.1|96_2007_-|ATP-binding-cassette-domain-containing-protein
MNILSVENASFAIGHVALLDKTSFQLDSGEKVGLIGRNGAGKSSFLKILAGLQKLDDGQIIVQNNLKIVYVPQESFFDKDATVFDTVAEGLGEIRDLLRRYHHVSHDLEHNSDDVLLKELNELQLEIEAKDGWKLDAAVKQTLGELGLPENEKIGNLSGGQKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDNIATRIVELDRGILRSYPGSFSKYSEKKAQELVVEAEHNRLFDKFHAQEEAWIRKGIEARRTRNEGRVRRLEELRRQRAERRNGQGQVNFKLDSGEKSGKIIAELEHASFAYGDKVIMDKFSAILQRGDKIGLIGPNGIGKTTFLKLILGELQPTYGRIRIGSKQEVAYFDQFRSALNENDTVFYTLGQGNDYVEVGGKKKHVMSYLEDFLFPPARAQSPVSSLSGGERNRLLLAKLFTRPANILVLDEPTNDLDIDTQELLEDLLRDYQGTVFLVSHDRMFLDNVITQSLVFEGNGRLKEYIGGYQDYIDAKSREAKIQTESAPKTADAEPVKEKPKANRTVKLSYKEQRELDALPDEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLETKQNGNAV

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Click the colored protein region to show detailed information

Crispr_ID: NZ_JWNH01000053_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JWNH01000053_2

4165-4266

Orphan

I-E

Consensus_repeat	Method
CGTCATTCCCGCTCAGGCGGGAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_JWNH01000053_2

>merge|NZ_JWNH01000053|2|4165-4266|CRISPRCasFinder
CGTCATTCCCGCGAAAGCGGGAATCTAGGTTCGTCCGGTTTCGGTTATTTCCGATAGATTCCTGCCGCGTTGGGGGTCTGGATTCCCGCCTGCGCGGGAATG

>NZ_JWNH01000053|2|2|4165-4266|CRISPRCasFinder
CGTCATTCCCGCGAAAGCGGGAATC	TAGGTTCGTCCGGTTTCGGTTATTTCCGATAGATTCCTGCCGCGTTGGGGGT
CTGGATTCCCGCCTGCGCGGGAATG

>NZ_JWNH01000053.1|WP_002219342.1|2832_3651_-|adhesin-Opc
MKKTVFTYAMIALTGTAAAAQELQTANEFTVHTDLSSISSTRAFLKEKHKAAKHIGVRADIPFDASQGIRLEAGFGRSKKNIINLETDENKLGKTKNVKLPTGVPENRIDLYTGYTYTQTLSDSLNFRVGAGLGFESSKDSIKTTKHTLHSSRQSWSAKVHADLLSQLGNGWYINPWSEVKFDLKSRYKLNTGVTSLKKDINQKTNGWGFGLGANIGKKLGESASIEAGPFYKQRTYKESGEFSVTTTSGDVSLTIPKTSIREYGLRVGIKF
>NZ_JWNH01000053.1|WP_002219343.1|2025_2670_-|DedA-family-protein
MLASAIDFILHIDQHLLALSAQYGVWIYAILFLIVFCETGLIVTPLLPGDSLLFAAGGIAALGGMDIHLMVALLSLAAILGDALNFTVGKYFGGRLFANPDSKIFRREYLDKTHRFYEKHGGKTIIIARFMPIVRTFAPFVAGMGKMHYAKFIRYNIIGGLLWVILFSYAGYFFANFPVVKNNLGLVMGGIIIVSVLPGAVEIARAKLAVKSKR
>NZ_JWNH01000053.1|WP_002219344.1|96_2007_-|ATP-binding-cassette-domain-containing-protein
MNILSVENASFAIGHVALLDKTSFQLDSGEKVGLIGRNGAGKSSFLKILAGLQKLDDGQIIVQNNLKIVYVPQESFFDKDATVFDTVAEGLGEIRDLLRRYHHVSHDLEHNSDDVLLKELNELQLEIEAKDGWKLDAAVKQTLGELGLPENEKIGNLSGGQKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDNIATRIVELDRGILRSYPGSFSKYSEKKAQELVVEAEHNRLFDKFHAQEEAWIRKGIEARRTRNEGRVRRLEELRRQRAERRNGQGQVNFKLDSGEKSGKIIAELEHASFAYGDKVIMDKFSAILQRGDKIGLIGPNGIGKTTFLKLILGELQPTYGRIRIGSKQEVAYFDQFRSALNENDTVFYTLGQGNDYVEVGGKKKHVMSYLEDFLFPPARAQSPVSSLSGGERNRLLLAKLFTRPANILVLDEPTNDLDIDTQELLEDLLRDYQGTVFLVSHDRMFLDNVITQSLVFEGNGRLKEYIGGYQDYIDAKSREAKIQTESAPKTADAEPVKEKPKANRTVKLSYKEQRELDALPDEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLETKQNGNAV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_JWNH01000053_1	1.1\|3913\|50\|NZ_JWNH01000053\|CRISPRCasFinder	3913-3962	50	NZ_JWNH01000005.1	33204-33253	1	0.98
NZ_JWNH01000053_1	1.1\|3913\|50\|NZ_JWNH01000053\|CRISPRCasFinder	3913-3962	50	NZ_JWNH01000005.1	33758-33807	1	0.98
NZ_JWNH01000053_1	1.1\|3913\|50\|NZ_JWNH01000053\|CRISPRCasFinder	3913-3962	50	NZ_JWNH01000005.1	34035-34084	1	0.98

1. spacer 1.1|3913|50|NZ_JWNH01000053|CRISPRCasFinder matches to position: 33204-33253, mismatch: 1, identity: 0.98

tagaacccaacacggtaaaaatttatccgaagcgacaacaatcttttcat	CRISPR spacer
tagaacccaacacggcaaaaatttatccgaagcgacaacaatcttttcat	Protospacer
***************.**********************************

2. spacer 1.1|3913|50|NZ_JWNH01000053|CRISPRCasFinder matches to position: 33758-33807, mismatch: 1, identity: 0.98

tagaacccaacacggtaaaaatttatccgaagcgacaacaatcttttcat	CRISPR spacer
tagaacccaacacggcaaaaatttatccgaagcgacaacaatcttttcat	Protospacer
***************.**********************************

3. spacer 1.1|3913|50|NZ_JWNH01000053|CRISPRCasFinder matches to position: 34035-34084, mismatch: 1, identity: 0.98

tagaacccaacacggtaaaaatttatccgaagcgacaacaatcttttcat	CRISPR spacer
tagaacccaacacggcaaaaatttatccgaagcgacaacaatcttttcat	Protospacer
***************.**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

11. NZ_JWNH01000006

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_JWNH01000006_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JWNH01000006_1

46172-46270

Orphan

I-E

Consensus_repeat	Method
CGTCATTCCCGCGCAGGCGGGAATCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_JWNH01000006_1

>merge|NZ_JWNH01000006|1|46172-46270|CRISPRCasFinder
CGTCATTCCCGCGCAGGCGGGAATCCGGTCTGTTCGGTTTCAGTTGTTTTTGGGTTTCGGGTAATTTCCAAATCGTCATTCCCGCGCAGGCGGGAATCC

>NZ_JWNH01000006|1|1|46172-46270|CRISPRCasFinder
CGTCATTCCCGCGCAGGCGGGAATCC	GGTCTGTTCGGTTTCAGTTGTTTTTGGGTTTCGGGTAATTTCCAAAT
CGTCATTCCCGCGCAGGCGGGAATCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_JWNH01000006.1\|WP_002216270.1\|35523_36081_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_JWNH01000006.1\|WP_012222102.1\|53386_53632_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000006.1\|WP_050893767.1\|38945_39719_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293
NZ_JWNH01000006.1\|WP_127281563.1\|41359_43255_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_JWNH01000006.1\|WP_061698960.1\|40706_41291_-\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|260003
NZ_JWNH01000006.1\|WP_002228897.1\|53628_54438_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_JWNH01000006.1\|WP_002218604.1\|47237_49997_-\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|236766
NZ_JWNH01000006.1\|WP_017629009.1\|50119_50413_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000006.1\|WP_002226925.1\|55547_56273_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|225235
NZ_JWNH01000006.1\|WP_127281564.1\|45166_46156_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_JWNH01000006.1\|WP_002215509.1\|43579_45007_-\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NZ_JWNH01000006.1\|WP_002218605.1\|51548_52703_+\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|223834
NZ_JWNH01000006.1\|WP_002218597.1\|38223_38847_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_JWNH01000006.1\|WP_127281562.1\|37642_38128_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000006.1\|WP_101066111.1\|52958_53369_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000006.1\|WP_002216271.1\|36261_37389_-\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NZ_JWNH01000006.1\|WP_101084541.1\|39921_40131_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000006.1\|WP_002228895.1\|54447_54825_-\|outer-membrane-protein-assembly-factor-BamE	unknown	unknown	gnl\|CDD\|225465
NZ_JWNH01000006.1\|WP_002215521.1\|50490_51483_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|182909
NZ_JWNH01000006.1\|WP_021437269.1\|54980_55478_+\|ferric-iron-uptake-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236527

Protein	Function_ID	Function_description	E-value
NZ_JWNH01000006.1\|WP_002216270.1\|35523_36081_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	8.06261e-103
NZ_JWNH01000006.1\|WP_050893767.1\|38945_39719_+\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	5.97687e-82
NZ_JWNH01000006.1\|WP_127281563.1\|41359_43255_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_JWNH01000006.1\|WP_061698960.1\|40706_41291_-\|ribonuclease-HII	gnl\|CDD\|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	5.06561e-105
NZ_JWNH01000006.1\|WP_002228897.1\|53628_54438_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	8.50742e-132
NZ_JWNH01000006.1\|WP_002218604.1\|47237_49997_-\|Rne/Rng-family-ribonuclease	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	0
NZ_JWNH01000006.1\|WP_002218605.1\|51548_52703_+\|lipid-A-disaccharide-synthase	gnl\|CDD\|223834	COG0763, LpxB, Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane].	1.32554e-175
NZ_JWNH01000006.1\|WP_127281564.1\|45166_46156_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	1.34424e-171
NZ_JWNH01000006.1\|WP_002215509.1\|43579_45007_-\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
NZ_JWNH01000006.1\|WP_002226925.1\|55547_56273_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|225235	COG2360, Aat, Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones].	8.18675e-110
NZ_JWNH01000006.1\|WP_002218597.1\|38223_38847_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	6.65567e-89
NZ_JWNH01000006.1\|WP_021437269.1\|54980_55478_+\|ferric-iron-uptake-transcriptional-regulator	gnl\|CDD\|236527	PRK09462, fur, ferric uptake regulator; Provisional.	1.40215e-56
NZ_JWNH01000006.1\|WP_002216271.1\|36261_37389_-\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	1.24905e-47
NZ_JWNH01000006.1\|WP_002215521.1\|50490_51483_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|182909	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC.	1.04784e-116
NZ_JWNH01000006.1\|WP_002228895.1\|54447_54825_-\|outer-membrane-protein-assembly-factor-BamE	gnl\|CDD\|225465	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane].	3.14144e-42

>NZ_JWNH01000006.1|WP_127281564.1|45166_46156_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MKQPVFAVTSGEPAGIGPDICLDLAFARLPCRCAVLGDKNLLRARAEALGKSVVLRDFDPESGGAAYGELEVLHIPAVEAVEAGKLNPANAAYVLQLLDTALAGISDGIFDGIVTAPLHKGIINDARASTGFFSGHTEYLAEKSGTGQVVMMLAGKGLRVALVTTHLPLKDVAAAITQPLIESVARILHHDLKHKFGIKNPKILVAGLNPHAGEGGHLGHEETDTIIPALENLRREGINLAGPYPADTLFQPFMLEGADAVLAMYHDQGLPVLKYHSFGQGVNITLGLPFIRTSVDHGTALDLAATGRADSGSLITAVETAVEMAHGSL
>NZ_JWNH01000006.1|WP_002215509.1|43579_45007_-|sodium:alanine-symporter-family-protein
MNENFTEWLHGWVGAINDPMWSYLVYMLLGTGLFFTVTTGFVQFRLFGRSIKEMLGGRKQGDDPHGITPFQAFVTGLASRVGVGNIAGVAIAIKVGGPGAVFWMWVTALIGMSSAFVESSLAQLFKVRDYDNHHFRGGPAYYITQGLGQKWLGVLFALSLIFCFGFVFEAVQTNTIADTVKAAWGWEPHYVGVALVILTAPIIFGGIRRISKAAEIVVPLMAVLYLFIALFIILTNIPMIPDVFGQIFSGAFKFDAAAGGLLGGLISQTMMMGIKRGLYSNEAGMGSAPNAAAAAEVKHPVSQGMIQMLGVFVDTIIVCSCTAFIILIYQQPYGDLSGAALTQAAIVSQVGQWGAGFLAVILFMFAFSTVIGNYAYAESNVQFIKSHWLITAVFRMLVLAWVYFGAVANVPLVWDMADMAMGIMAWINLVAILLLSPLAFMLLRDYTAKLKMGKDPEFKLSEHPGLKRRIKSDVW
>NZ_JWNH01000006.1|WP_127281563.1|41359_43255_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MTHMIYPKTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELDALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQAVEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLGGRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGSAEMHPHQVSCWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTWYTPQKLAEDEQIRVFGQKLNREANLHDLLRRPNLDYAALMTLEGAMPSERLAAEVVEQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASRISGVTPAAVALLMVHLKRGFKDAK
>NZ_JWNH01000006.1|WP_061698960.1|40706_41291_-|ribonuclease-HII
MHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDTLAEMIKDQAAAWHVAAATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLGIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVRNLLAQQTLF
>NZ_JWNH01000006.1|WP_101084541.1|39921_40131_+|hypothetical-protein
MRLRRLVLIFVNPLYRHSRKNKKIKNTKLKYRHSRAGGNLGLSVRKLIGKNGFSKPETPDSCFRRNPVF
>NZ_JWNH01000006.1|WP_050893767.1|38945_39719_+|ParA-family-protein
MSANILAIANQKGGVGKTTTTVNLAASLALRGKRVLVVDLDPQGNATTGSGIDKASLQSGVYQVLLGDADVQPAAVRSKEGGYAVLGANRALAGAEIELVQEIAREVRLKNALKAVAEDYDFILIDCPPSLTLLTLNGLVAAGGVIVPMLCEYYALEGISDLIATVRKIRQAVNPDLDITGIVRTMYDSRSRLVAEVSEQLRSHFGDLLFETVIPRNIRLAEAPSHGMPVMAYDAQAKGTKAYLALADELMARVSGK
>NZ_JWNH01000006.1|WP_002218597.1|38223_38847_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MERKERLRAGIAALGLDISAAAQDRLLAYVDLLKKWNKTYNLTALRDEEKMIVHHLLDSLTLLPHIEGVQTMLDVGSGGGQPGIPAAVCRPDVQITLLDANTKKTAFLQQAVIELGLDNVRVVSGRVEAVSDVRADVVTSRAFAELADFVSWTVHLLKDGGYWAAMKGVYPQEEIGRLPQDVCVEKVQRLDVPGLEAERHIVILSKR
>NZ_JWNH01000006.1|WP_127281562.1|37642_38128_+|hypothetical-protein
MYVNEKYPYAALFAGLVFLTLPFALSVHDALAFAFGRAGLLVSVSDGEFGWRGGWDGTVWFVFGVFAFLNVVVSAGLTKLAYKKMMRRHSRYALFLSGVAACAAAAVAWIFELLLGSGALGGLRGEAVLEYAFAVWLVAMLTLPKRLTRAPVQPVVFHRKK
>NZ_JWNH01000006.1|WP_002216271.1|36261_37389_-|FUSC-family-protein
MNTSQRNRLVSRWLNSYERYRHRRLIHAVRLGGAVLFATALARLLHLQHGEWIGMTVFVVLGMLQFQGAIYSKAVERMLGTVIGLGAGLGVLWLNQHYFHGNLLFYLTVGTASALAGWAAVGKNGYVPMLAGLTMCMLIGDNGSEWFDSGLMRAMNVLIGAAIAIAAAKLLPLKSTLMWRFMLADNLTDCSKMIAEISNGRRMTRERLEQNMVKMRQINARMVKSRSHLAATSGESRISPAMMEAMQHAHRKIVNTTELLLTTAAKLQSPKLNGSEIRLLDRHFTLLQTDLQQTVALINGRHARRIRIDTAINPELEALAEHLHYQWQGFLWLSTNMRQEISALVILLQRTRRKWLDAHERQHLRQSLLETREHG
>NZ_JWNH01000006.1|WP_002216270.1|35523_36081_-|ribosome-recycling-factor
MINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDLMAI
>NZ_JWNH01000006.1|WP_002218604.1|47237_49997_-|Rne/Rng-family-ribonuclease
MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLPFKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPGNIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEAMKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTDDVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWWDSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREVAGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQSRNVQPAATVADAAPSETEMQTGKRRRNGSRSERSQTAPETAAVAETAVQTAENTPSEPHTAEDKGSKPKSERNRRERDSRDAKERRERNNQRDRRQNGKKRNIPSAAKIEQYLNIHDTADKVRSAAAHVFGETDANAPITVSIADPVAERDLPTASPAVSNGDAPVYDAAEKIRRATAAILPEGATPKAEAQEMPSETATFTAAAEQARETAQTGGLVLIETDPAALKAWAAQPEVQTGRGLRRSEQPKPSEVATVPAEEMIQVETRQG
>NZ_JWNH01000006.1|WP_017629009.1|50119_50413_+|hypothetical-protein
MHVPENRVRKGRIQKAIKIDAAVCLPRSERCGRKNGGRLLLVIVMPVFWAVCVWDLGPGCRLTSAPKRQNQFKLDYVLRLPAGNRRRENALRSAFLI
>NZ_JWNH01000006.1|WP_002215521.1|50490_51483_+|RluA-family-pseudouridine-synthase
MKTHEISKDSVSLIGVAEHEAGQRLDNYLIKILKGVPKSHIHRIIRAGEVRLNKKRCKPDSRIAEGDTVRIPPVRVAEKEMPSERRAAVPARAFDVVYEDDALLVIDKPSGVAVHGGSGVSFGVIEQLRRARPEAKYLELVHRLDKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLPDDNFHVKLPLFKYTGAQGEKMVRVSADGQSAHTVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQIRVHLQSQGCPIAGDERYGDYQANRRLQKLGLKRMFLHASELHLNHPLTGEPLVLKVGLPPDLAQFAVMLENGTKM
>NZ_JWNH01000006.1|WP_002218605.1|51548_52703_+|lipid-A-disaccharide-synthase
MVDKKSPLIAVSVGEASGDLLGAHLIRAIRERCPQARFTGIGGELMKAEGFESLYDQERLAVRGFVEVVRRLPEILRIRRGLVRDLLSLKPDVFVGIDAPDFNLGVAEKLKRTGIPTVHYVSPSVWAWRRERVGKIVHQVNRVLCLFPMEPQLYLDAGGRAEFVGHPMAQLMPLEDDRETARKTLGVDAGIPVFALLPGSRVSEIDYMAPVFFQTALLLLERYPAARFLLPAATAATKRRLAEVLQRPEFAGLPLTVIDRQSETVCRAADAVLVTSGTATLEVALCKRPMVISYKISPLTYAYVKRKIKVPHVGLPNILLGKEAVPELLQHDAVPEKLAAALADWYEHPDKVAALQQDFRALHLLLKKDTADLAARAVLEEAGC
>NZ_JWNH01000006.1|WP_101066111.1|52958_53369_+|hypothetical-protein
MTTYTIPKKDYQFLYIYEGTLLNYTLKNDEFHIIVQNVDYPDFPQEIPTPNYTDWVKIKFKQFSYLKFVYGYATKSQDINIDNTLELGELKQDDEILDYGGALELIGGRYDFPTAFRIDIVCREIELEFLDQESFN
>NZ_JWNH01000006.1|WP_012222102.1|53386_53632_+|hypothetical-protein
MPRKQLYRISFSVETPPLGHLSFGAVESDFIWEGRNPFQIRTTHRATLYVSSRVLKHMPIRSLSAKCRLNNIFSDGILYGG
>NZ_JWNH01000006.1|WP_002228897.1|53628_54438_-|4-hydroxy-tetrahydrodipicolinate-reductase
MTPLKIAIAGANGRMGRVLVEAVNNHPDTVLSGALEHSGSEALGLDAGYAVGLKTGIAISDDVDAVLAQSDVLIDFTRPEPTLKHLQKCVEKQVNIIIGTTGFDDAGKAAIHTAAEQTGIVFAANFSVGVNLTFHILDTVARVLNEGYDIEIIEGHHRHKVDAPSGTALRMGEVIAGALGRDLKQCAVYGREGHTGPRDPSTIGFATVRAGDIVGDHTALFATDGERVEITHKAGSRMTFAAGAVRAAVWVNGKTGLYDMQDVLGLNNR
>NZ_JWNH01000006.1|WP_002228895.1|54447_54825_-|outer-membrane-protein-assembly-factor-BamE
MNKTLILALSALLGLAACSVERVSLFPSYKLKIIQGNELEPRAVASLRPGMTKDQVLLLLGSPILRDAFHTDRWDYTFNTSRNGIIKDRSNLTVYFENGVLVRTEGNALQNAAEALRVKQNADKQ
>NZ_JWNH01000006.1|WP_021437269.1|54980_55478_+|ferric-iron-uptake-transcriptional-regulator
MGKQAEIAYYNVYCFTGVLNIMEKFNNIAQLKDSGLKVTGPRLKILDLFETHAEEHLSAEDVYRILLEEGVEIGVATIYRVLTQFEQAGILQRHHFETGKAVYELDKGDHHDHIVCVKCGEVTEFHNPEIEALQDKIAEENGYRIVDHALYMYGVCSDCQAKGKR
>NZ_JWNH01000006.1|WP_002226925.1|55547_56273_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRIPLLAPDNYAFPDPAYALAWCDGLVGVSGDLDAGRLLEAYRNGVFPWFSRDGWFFWYAVGPRAVIVPERLHVPRSLAKTLRNGSYRVAVNGCFAEVVAHCAAAARPNQDGTWIAPEFQTAYLKLHEMGHAHSFECHYPDESGETRLAGGFYGVQIGRVFYGESMFALQPDASKIAFACAVPFLADLGVELIDCQQDTEHMRRFGSELLPFADFAERLRMLNAVPLKEEIGRREVACKGL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_JWNH01000006_1	1.1\|46198\|47\|NZ_JWNH01000006\|CRISPRCasFinder	46198-46244	47	NZ_JWNH01000040.1	16974-17020	0	1.0

1. spacer 1.1|46198|47|NZ_JWNH01000006|CRISPRCasFinder matches to position: 16974-17020, mismatch: 0, identity: 1.0

ggtctgttcggtttcagttgtttttgggtttcgggtaatttccaaat	CRISPR spacer
ggtctgttcggtttcagttgtttttgggtttcgggtaatttccaaat	Protospacer
***********************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

12. NZ_JWNH01000014

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

13. NZ_JWNH01000040

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

14. NZ_JWNH01000005

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CRISPR-Cas detection and classification

Crispr_ID: NZ_JWNH01000005_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JWNH01000005_1

21391-21471

Orphan

I-E

Consensus_repeat	Method
CCGTCATTCCTACGAAAGTGGGAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_JWNH01000005_1

>merge|NZ_JWNH01000005|1|21391-21471|CRISPRCasFinder
CCGTCATTCCTACGAAAGTGGGAATCTAGAACGCGGGGTTAAGAAAACCTGCATCCCGTCATTCCCACGAAAGTGGGAATC

>NZ_JWNH01000005|1|1|21391-21471|CRISPRCasFinder
CCGTCATTCCTACGAAAGTGGGAATC	TAGAACGCGGGGTTAAGAAAACCTGCATC
CCGTCATTCCCACGAAAGTGGGAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_JWNH01000005.1\|WP_002225683.1\|19585_20329_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_JWNH01000005.1\|WP_002218169.1\|22904_23144_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225215
NZ_JWNH01000005.1\|WP_002221692.1\|13577_14096_+\|gluconokinase	unknown	unknown	gnl\|CDD\|273551
NZ_JWNH01000005.1\|WP_127281534.1\|21984_22782_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_JWNH01000005.1\|WP_153559634.1\|33078_33288_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000005.1\|WP_127281537.1\|31239_32115_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239648
NZ_JWNH01000005.1\|WP_002214957.1\|9764_10364_-\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|239474
NZ_JWNH01000005.1\|WP_002225681.1\|16268_17510_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_JWNH01000005.1\|WP_002230041.1\|34335_36111_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_JWNH01000005.1\|WP_002218170.1\|23137_23455_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_JWNH01000005.1\|WP_002221694.1\|15388_16117_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	unknown	unknown	gnl\|CDD\|235350
NZ_JWNH01000005.1\|WP_002224688.1\|18993_19557_+\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	unknown	unknown	gnl\|CDD\|236354
NZ_JWNH01000005.1\|WP_002218178.1\|36110_36380_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|224836
NZ_JWNH01000005.1\|WP_164732508.1\|10392_11934_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NZ_JWNH01000005.1\|WP_118834833.1\|25607_26597_+\|porin	unknown	unknown	gnl\|CDD\|365988
NZ_JWNH01000005.1\|WP_002225684.1\|20325_21018_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|224368
NZ_JWNH01000005.1\|WP_002214959.1\|12172_13558_+\|GntP-family-permease	unknown	unknown	gnl\|CDD\|225330
NZ_JWNH01000005.1\|WP_127281538.1\|32123_33062_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_JWNH01000005.1\|WP_002218156.1\|14434_15352_-\|homoserine-kinase	unknown	unknown	gnl\|CDD\|273351
NZ_JWNH01000005.1\|WP_127281535.1\|28740_30642_-\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451

Protein	Function_ID	Function_description	E-value
NZ_JWNH01000005.1\|WP_002225683.1\|19585_20329_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	5.61916e-47
NZ_JWNH01000005.1\|WP_002218169.1\|22904_23144_+\|hypothetical-protein	gnl\|CDD\|225215	COG2336, MazE, Growth regulator [Signal transduction mechanisms].	1.71634e-25
NZ_JWNH01000005.1\|WP_002221692.1\|13577_14096_+\|gluconokinase	gnl\|CDD\|273551	TIGR01313, Thermosensitive_gluconokinase, carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.	7.31793e-92
NZ_JWNH01000005.1\|WP_127281534.1\|21984_22782_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	5.77574e-130
NZ_JWNH01000005.1\|WP_002230041.1\|34335_36111_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_JWNH01000005.1\|WP_127281537.1\|31239_32115_+\|NUDIX-domain-containing-protein	gnl\|CDD\|239648	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.41784e-85
NZ_JWNH01000005.1\|WP_002214957.1\|9764_10364_-\|carbonic-anhydrase	gnl\|CDD\|239474	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	1.78696e-62
NZ_JWNH01000005.1\|WP_002225681.1\|16268_17510_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	8.15364e-145
NZ_JWNH01000005.1\|WP_002218170.1\|23137_23455_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	1.11029e-27
NZ_JWNH01000005.1\|WP_002221694.1\|15388_16117_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.08276e-148
NZ_JWNH01000005.1\|WP_002224688.1\|18993_19557_+\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	gnl\|CDD\|236354	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase.	7.09175e-105
NZ_JWNH01000005.1\|WP_002218178.1\|36110_36380_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|224836	COG1925, FruB, Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism].	3.69582e-35
NZ_JWNH01000005.1\|WP_164732508.1\|10392_11934_-\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	1.4016e-96
NZ_JWNH01000005.1\|WP_118834833.1\|25607_26597_+\|porin	gnl\|CDD\|365988	pfam00267, Porin_1, Gram-negative porin.	3.77654e-84
NZ_JWNH01000005.1\|WP_002225684.1\|20325_21018_+\|M48-family-metallopeptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	4.18048e-70
NZ_JWNH01000005.1\|WP_002214959.1\|12172_13558_+\|GntP-family-permease	gnl\|CDD\|225330	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism].	5.80516e-123
NZ_JWNH01000005.1\|WP_127281538.1\|32123_33062_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	3.80526e-124
NZ_JWNH01000005.1\|WP_002218156.1\|14434_15352_-\|homoserine-kinase	gnl\|CDD\|273351	TIGR00938, homoserine_kinase_homolog, homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase. [Amino acid biosynthesis, Aspartate family].	0
NZ_JWNH01000005.1\|WP_127281535.1\|28740_30642_-\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0

>NZ_JWNH01000005.1|WP_002225684.1|20325_21018_+|M48-family-metallopeptidase
MTAFVHTLSDGMELTVEIKRRAKKNLIIRPAGTHTVRISVPPCFSVSALNRWLYENEAVLRQTLAKTPPPQTAENRLPESILFHGRQLALTAHQDTQILLMPSEIRVPEGAPEKQLALLRDFLERQAHSYLIPRLERHARTTQLFPASSSLTSAKTFWGVCRKTTGIRFNWRLVGAPEYVADYVCIHELCHLAHPDHSPAFWELTRRFAPYTPKAKQWLKIHGRELFALG
>NZ_JWNH01000005.1|WP_002225683.1|19585_20329_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MLIIRNLIYWLILCSTLIFLFPFMLLASPFRDGAHKMARVWVGILNWSLKHIVGLKYRIIGAENIPDRPAVICAKHQSGWETLALQDIFPPQVYVAKRELFKIPFFGWGLKLVKTIGIDRNNRREANEQLIKQGLVRKNEGYWITIFPEGTRLAPGKRGKYKLGGARMAKMFEMDIVPVALNSGEFWPKNSFLKYPGEITVVICPTIPHASGSEAELMEKCEHLIETQQPLISGAGPFAAKMPSETA
>NZ_JWNH01000005.1|WP_002224688.1|18993_19557_+|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase
MKLIILDRDGVINQDRDDFVKSVDEWIPVEGSMDAVAFLTQAGYTVAVATNQSGIGRKYFTVQNLTEMHAKMHRLVRQAGGEINGIWFCPHTDADNCNCRKPKPGMIEDIIGRFNAQASETWLVGDSLRDLQAIDAVGGKPALVLTGKGKKTLSQHGHELPEHTQVFDTLLDFSQYIMQENTAPQAD
>NZ_JWNH01000005.1|WP_002225681.1|16268_17510_+|tryptophan-permease
MPNKTPSLFGGAMIIAGTVIGAGMLANPTATSGVWFTGSLAVLLYTWFSMLSSGLMILEVNTHYPHGASFDTMVKDLLGRGWNIINGIAVAFVLYLLTYAYIFVGGDLTAKGLGSAAGGDVSLTVGQLVFFGILAFCVWASARLVDRFTGVLIGGMVLTFIWAAGGLIADAKPSVLFDTQAPAGTNYWIYAATALPVCLASFGFHGNVSSLLKYFKGDAPKVAKSIWTGTLIALVIYVLWQTAIQGNLPRNEFAPVIAAEGQVSVLIETLSKFAQTGNMDKILSLFSYMAIATSFLGVTLGLFDYIADIFKWNDSISGRTKTAALTFLPPLISCLLFPTGFVTAIGYVGLAATVWTGIIPAMLLYRSRKKFGAGKTYKVYGGLWLMVWVFLFGIVNIAAQVLSQMELVPVFKG
>NZ_JWNH01000005.1|WP_002221694.1|15388_16117_-|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG
MGGKMSDKKYNVDEGEIAKFSRIADKWWDKSGEFKTLHDINPLRLDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLHAALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIVRACANLVKPDGMVFFSTINKNPKSYLHLIVAAEYLLKFVPKGTHDWKKFIAPAELARMCRQAGLDVADTKGMTYHVLSQTYALCDSTDVNYMFACRPAF
>NZ_JWNH01000005.1|WP_002218156.1|14434_15352_-|homoserine-kinase
MSVYTSVSDDEMRGFLSGYDLGEFVSLQGIAQGITNSNYFLTTTSGRYVLTVFEVLKQEELPFFLELNRHLSMKGVAVAAPVARKDGRLDSVLAGKPACLVACLKGSDTALPTAEQCFHTGAMLAKMHLAAADFPLEMENPRYNAWWTEACARLLPVLSQDDAALLCSEIDALKDNLGNHLPSGIIHADLFKDNVLLDGGQVSGFIDFYYACRGNFMYDLAIAVNDWARTADNKLDEALKKAFIGGYEGVRPLSAEEKAYFPTAQRAGCIRFWVSRLLDFHFPQAGEMTFIKDPNAFRNLLLSLG
>NZ_JWNH01000005.1|WP_002221692.1|13577_14096_+|gluconokinase
MTTHFVVMGVCGCGKTTAALSLQKHLGQCPYAEGDEFHTQANRDKMGAGIPLTDEDRYPWLGNLRDWMTQQAQNGANHTIVTCSALKRGYRDILRGAEGKAAFIHLSPPQDINLERMMSRKGHYMKAGMLDSQLEILEELGEGEYGVKIANPGTPEAVEADILNWVASENLL
>NZ_JWNH01000005.1|WP_002214959.1|12172_13558_+|GntP-family-permease
MDGWTQTLSAQTLLGISAAAIILILILIVKFRIHALLTLVIVSLLTALATGLPTGSIVNDVLVKNFGGTLGGVALLVGLGAMLGRLVETSGGAQSLADALIRMFGEKRAPFALGVASLIFGFPIFFDAGLIVMLPIVFATARRMKQDVLPFALASIGAFSVMHVFLPPHPGPIAASEFYGANIGQVLILGLPTAFITWYFSGYMLGKVLGRTIHVPVPELLSGGTQDNDLPKEPAKAGTVVAIMLIPMLLIFLNTGVSALISEKLVSADETWVQTAKIIGSTPIALLISVLVALFVLGRKRGESGSALEKTVDGALAPVCSVILITGAGGMFGGVLRASGIGKALADSMADLGIPVLLGCFLVALALRIAQGSATVALTTAAALMAPAVAAAGFTDWQLACIVLATAAGSVGCSHFNDSGFWLVGRLLDMDVPTTLKTWTVNQTLIALIGFALSALLFAIV
>NZ_JWNH01000005.1|WP_164732508.1|10392_11934_-|iron-ABC-transporter-permease
MDGRRWAVWGAFALLPSAFLAVMVVAPLWAVAAYDGLAWRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLLWRGRQDTPYLLLYGNVFFNLPVLVRAAYQGFVQVPAARLQTARTLGAGAWRRFLDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGSRYATVEVEIYQLVMFELDMAVASVLVWLVLGVTAAAGLLYAWFGRRAVSDKAVSPVMPSPPQSVGEYVLLAFAAAVLSVCCLFPLLAIVVKAWSVGESWRVLMESETWQAVWNTLRFSAAAVYAAAVLGVVYAAAARRSAWMRGLMFLPFMVSPVCVSAGVLLLYPQWTASLPLLLAMYALLAYPFVAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFLSRPEWQTLTTLIYAYLGRAGEDNYARAMVLTLLLSAFALGIFLLLDNGEGGKQTETL
>NZ_JWNH01000005.1|WP_002214957.1|9764_10364_-|carbonic-anhydrase
MSELDNILAHNRQFVESGEYEKYFTDKYPERGLAVLSCMDARIIGLLPDALGLKNGDAKLIKNAGALVTHPWGSVMRSLLVAVFELKVREIMVIAHHDCGMQGLNAEEFLGRVRESRIPEDRIETLRYAGVDLDGWLTGFDNVEDSVRHTVELIRRHPLMPRHIAVHGLVIHPVTGKLTLVVDGSVSDGMDLSEGMETS
>NZ_JWNH01000005.1|WP_127281534.1|21984_22782_+|tRNA-pseudouridine(38-40)-synthase-TruA
MDTAQKQRWAITLSYDGSRFYGWQKQAGGVLTVQTALENALAQIAGEAVSTIVAGRTDTGVHATAQVVHFDTTAARPQQAWIRGVNAHLPEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPVRSPLLKNRAGWTHLKLDIGQMRQAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSAGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYLTGVDYPEAYGIIRPQIPEWL
>NZ_JWNH01000005.1|WP_002218169.1|22904_23144_+|hypothetical-protein
MILNIRKMGNSQGVILPKSLLGQIGAVDSLAVTVEKGNIILSCPTVRRGWAEAAAMLVETEQEHFFSEIENEADKEWIW
>NZ_JWNH01000005.1|WP_002218170.1|23137_23455_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MVVRGGIYLVSLDPTVGSEIKKTRPCVVVSPPEIHNYLKTVLIVPMTSGSRPAPFRVNVRFQDKDGLLLPEQIRAVDKAGLVKHLGNLDNSTAEKLFAVLQEMFA
>NZ_JWNH01000005.1|WP_118834833.1|25607_26597_+|porin
MKKSLIALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDLGNGLKAIWQVEQKASIVGTDSGWGNRQSFIGLKGGFGKLRVGRLNSVLKDTGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHQNVDDVKIEKYQIHRLVSGYDNDALYASVAVQQQDAKLVEDNSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSFDAADYTNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFVSTAGGVGLRHKF
>NZ_JWNH01000005.1|WP_127281535.1|28740_30642_-|phosphomethylpyrimidine-synthase-ThiC
MTTPKKTAKTSGNEARELADLSEDIGIRFKYPNSERVYLQGSRDDIRVPLREIRQDDTYTAQGAEANPPIPVYDTSGVYGDPAAHIDLKQGLPHIRTAWLDERGDTEILPKLSSEYGIERAHDPKTAHLRFNQITRPRRAKVGCNVTQLHYARQGIITPEMEFVAIRERLKLDELSQKPEYAKLLEQHAGQSFGANIPTHPDQITPEFVRQEIAAGRAIIPANINHPELEPMIIGRNFRVKINGNLGNSAVTSSLTEEVEKMVWSLRWGADTIMDLSTGAHIHETREWIIRNAPVPIGTVPIYQALEKTGGIAEDLTWDLFRDTLIEQAEQGVDYFTIHAGVLLRYVPMTANRLTGIVSRGGSIMAKWCLAHHRENFLYTHFDEICEIMKAYDVSFSLGDGLRPGCIADANDESQFAELHTLGELTDKAWKHDVQVMIEGPGHVPLQRVKENMTEELQHCFEAPFYTLGPLVTDIAPGYDHITSGIGAANIGWYGTAMLCYVTPKEHLGLPDKEDVRTGIITYKLAAHAADLAKGWPGAQLRDNALSKARFEFRWRDQFRLSLDPERAESFHDETLPAEGAKIAHFCSMCGPKFCSMKITQEVRDYADKQKAQRQGMEEKAVEFVKKGAKIYS
>NZ_JWNH01000005.1|WP_127281537.1|31239_32115_+|NUDIX-domain-containing-protein
MPTVRFTESVSKHDLDALFEWAKASYGAESCWKTLYLNGLPLGNLSPEWAERVKKDWEAGCSESSDGIFLNAGGWPDMGGRLQYLACGWHCARLLDGWRNECFDLTDGGGNPLFALERAAFRPFGLLSRAVHLNGLTESDGRWHFWIGRRSPHKAVDPDKLDNTAAGGVSSGEMPSEAVCRESSEEAGLDKTLFPLIRPVSRLHSLRPVSRGVHNEILYVFDAILPETFLPENQDGEVAGFEKMDIGGLLDAMLSGNMMHDAQLVTLDAFCRYGLIDAAHPLSEWLDGIRL
>NZ_JWNH01000005.1|WP_127281538.1|32123_33062_+|ABC-transporter-ATP-binding-protein
MLELNGLCKRFGGKTVADDICLTVGRGKILAVLGRSGCGKSTLLNMIAGIVRPDGGEIWLNGENITRMPPEKRRISLMFQDYALFPHMSALENAAFGLKMQKMPKAEAESLAMAALAEVGLENEAHRKPEKLSGGEKQRLALVRALVVRPSLLLLDESFSSLDTHLRGTLRRMTAERIRNGGIPAVLVTHSPEEACTTADEIAVMHEGRILQYGTPETLVKTPACVQVARLMGLPNTDDDRHIPQHAVRFDQDGIECRVLSRICLPESFSLSVLHPEHGILWLNLDMPHAGEISGNDTVRIHIEDREIVRFR
>NZ_JWNH01000005.1|WP_153559634.1|33078_33288_+|hypothetical-protein
MPSENLSDGIFLPKQPYFLSGLQNLSETTETTLPSFPQKRESRTQHGKNLSEATTIFSSSFPRRRESRT
>NZ_JWNH01000005.1|WP_002230041.1|34335_36111_-|phosphoenolpyruvate--protein-phosphotransferase
MSIVLHGVAAGKGIAVGCAHLIARGTEEVPQYDVAEADTDAEAERFDAAVKATRKELEQLRSAIPENAPTELGAFISLHLMLLTDVTLSREPVDILREQKINAEWALKQQSDKLAAQFDNMDDAYLRERKQDMLQVVRRIHNNLIGQGNELEVADNLFDETVLIANDLSPADTVLFKEQRIAAFVTDAGGPTGHTAILGRSLDIPSVVGLHNARKLITEGETVIVDGINGVLIIAPDESVLNEYRRRAREYRSHKRDLNKLKKTAAATADGVCIELVGNIESAEDVKPLHNLGADGIGLFRSEFLYLNRDTMPSEDEQYEVYSAIVKKMKGKSVTIRTVDLGVDKNPRWFGKNSTPNGSLNPALGMTGIRLCLAEPVMFRTQMRAILRAAVHGPVRMMWPMITSVSEVRQCLIHLDTAQRQLAERGDAFGKVGIGCMIEIPSAALTVGSILKLVDFISVGTNDLIQYILSVDRGDDSVSHLYQPGHPAVLKMLQHVIRTANRMDKDVSVCGEMAGDTAFTRVLLGMGLRRFSMNPNNILPVKNIILHSNVGQLENEIAKIVRCEDEEKAEKLIKQINSVSVEEEADFKGRK
>NZ_JWNH01000005.1|WP_002218178.1|36110_36380_-|HPr-family-phosphocarrier-protein
MLKQSIEIINKLGLHARASNKFTQTASQFKSEVWVTKNDSRVNGKSIMGLMMLAAAKGTVIELETDGADEAEAMRALTDLINGYFGEGE

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Crispr_ID: NZ_JWNH01000005_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JWNH01000005_2

27650-27750

Orphan

I-E

Consensus_repeat	Method
TTCGTCATTCCCGCGCAGGCGGGAATCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_JWNH01000005_2

>merge|NZ_JWNH01000005|2|27650-27750|CRISPRCasFinder
CCCGTCATTCCCACGAAAGTGGGAATCTAGTTCGTTCGGTTTCGCTTGTTTTAAGTTTCGGGTAACTTCCACTTCGTCATTCCCGCGCAGGCGGGAATCTA

>NZ_JWNH01000005|2|2|27650-27750|CRISPRCasFinder
CCCGTCATTCCCACGAAAGTGGGAATCT	AGTTCGTTCGGTTTCGCTTGTTTTAAGTTTCGGGTAACTTCCAC
TTCGTCATTCCCGCGCAGGCGGGAATCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_JWNH01000005.1\|WP_002214994.1\|36448_36886_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225446
NZ_JWNH01000005.1\|WP_002225683.1\|19585_20329_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_JWNH01000005.1\|WP_002218169.1\|22904_23144_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225215
NZ_JWNH01000005.1\|WP_127281534.1\|21984_22782_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_JWNH01000005.1\|WP_153559634.1\|33078_33288_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000005.1\|WP_127281537.1\|31239_32115_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239648
NZ_JWNH01000005.1\|WP_002230045.1\|37598_38423_-\|DNA-ligase	unknown	unknown	gnl\|CDD\|181662
NZ_JWNH01000005.1\|WP_002225681.1\|16268_17510_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_JWNH01000005.1\|WP_002230041.1\|34335_36111_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_JWNH01000005.1\|WP_002218180.1\|36966_37530_-\|hypoxanthine-guanine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181675
NZ_JWNH01000005.1\|WP_002221694.1\|15388_16117_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	unknown	unknown	gnl\|CDD\|235350
NZ_JWNH01000005.1\|WP_002224688.1\|18993_19557_+\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	unknown	unknown	gnl\|CDD\|236354
NZ_JWNH01000005.1\|WP_002218178.1\|36110_36380_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|224836
NZ_JWNH01000005.1\|WP_002218170.1\|23137_23455_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_JWNH01000005.1\|WP_118834833.1\|25607_26597_+\|porin	unknown	unknown	gnl\|CDD\|365988
NZ_JWNH01000005.1\|WP_002225684.1\|20325_21018_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|224368
NZ_JWNH01000005.1\|WP_127281554.1\|38514_39147_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293823
NZ_JWNH01000005.1\|WP_127281538.1\|32123_33062_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_JWNH01000005.1\|WP_002218156.1\|14434_15352_-\|homoserine-kinase	unknown	unknown	gnl\|CDD\|273351
NZ_JWNH01000005.1\|WP_127281535.1\|28740_30642_-\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451

Protein	Function_ID	Function_description	E-value
NZ_JWNH01000005.1\|WP_002225683.1\|19585_20329_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	5.61916e-47
NZ_JWNH01000005.1\|WP_002218169.1\|22904_23144_+\|hypothetical-protein	gnl\|CDD\|225215	COG2336, MazE, Growth regulator [Signal transduction mechanisms].	1.71634e-25
NZ_JWNH01000005.1\|WP_127281534.1\|21984_22782_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	5.77574e-130
NZ_JWNH01000005.1\|WP_002230041.1\|34335_36111_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_JWNH01000005.1\|WP_127281537.1\|31239_32115_+\|NUDIX-domain-containing-protein	gnl\|CDD\|239648	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.41784e-85
NZ_JWNH01000005.1\|WP_002230045.1\|37598_38423_-\|DNA-ligase	gnl\|CDD\|181662	PRK09125, PRK09125, DNA ligase; Provisional.	3.62998e-151
NZ_JWNH01000005.1\|WP_002225681.1\|16268_17510_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	8.15364e-145
NZ_JWNH01000005.1\|WP_002214994.1\|36448_36886_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	5.92028e-36
NZ_JWNH01000005.1\|WP_002218180.1\|36966_37530_-\|hypoxanthine-guanine-phosphoribosyltransferase	gnl\|CDD\|181675	PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase; Provisional.	9.61403e-98
NZ_JWNH01000005.1\|WP_002221694.1\|15388_16117_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.08276e-148
NZ_JWNH01000005.1\|WP_002224688.1\|18993_19557_+\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	gnl\|CDD\|236354	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase.	7.09175e-105
NZ_JWNH01000005.1\|WP_002218178.1\|36110_36380_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|224836	COG1925, FruB, Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism].	3.69582e-35
NZ_JWNH01000005.1\|WP_002218170.1\|23137_23455_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	1.11029e-27
NZ_JWNH01000005.1\|WP_118834833.1\|25607_26597_+\|porin	gnl\|CDD\|365988	pfam00267, Porin_1, Gram-negative porin.	3.77654e-84
NZ_JWNH01000005.1\|WP_002225684.1\|20325_21018_+\|M48-family-metallopeptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	4.18048e-70
NZ_JWNH01000005.1\|WP_127281554.1\|38514_39147_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293823	cd07737, YcbL-like_MBL-fold, Salmonella enterica serovar typhimurium YcbL and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes Salmonella enterica serovar typhimurium YcbL which has type II hydroxyacylglutathione hydrolase (EC 3.1.2.6, also known as glyoxalase II) activity, and has a single metal ion binding site, and Thermus thermophilus TTHA1623 which does not have GLX2 activity and has two metal ion binding sites with a glyoxalase II-type metal coordination. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	5.8599e-113
NZ_JWNH01000005.1\|WP_127281538.1\|32123_33062_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	3.80526e-124
NZ_JWNH01000005.1\|WP_002218156.1\|14434_15352_-\|homoserine-kinase	gnl\|CDD\|273351	TIGR00938, homoserine_kinase_homolog, homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase. [Amino acid biosynthesis, Aspartate family].	0
NZ_JWNH01000005.1\|WP_127281535.1\|28740_30642_-\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0

>NZ_JWNH01000005.1|WP_118834833.1|25607_26597_+|porin
MKKSLIALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDLGNGLKAIWQVEQKASIVGTDSGWGNRQSFIGLKGGFGKLRVGRLNSVLKDTGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHQNVDDVKIEKYQIHRLVSGYDNDALYASVAVQQQDAKLVEDNSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSFDAADYTNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFVSTAGGVGLRHKF
>NZ_JWNH01000005.1|WP_002218170.1|23137_23455_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MVVRGGIYLVSLDPTVGSEIKKTRPCVVVSPPEIHNYLKTVLIVPMTSGSRPAPFRVNVRFQDKDGLLLPEQIRAVDKAGLVKHLGNLDNSTAEKLFAVLQEMFA
>NZ_JWNH01000005.1|WP_002218169.1|22904_23144_+|hypothetical-protein
MILNIRKMGNSQGVILPKSLLGQIGAVDSLAVTVEKGNIILSCPTVRRGWAEAAAMLVETEQEHFFSEIENEADKEWIW
>NZ_JWNH01000005.1|WP_127281534.1|21984_22782_+|tRNA-pseudouridine(38-40)-synthase-TruA
MDTAQKQRWAITLSYDGSRFYGWQKQAGGVLTVQTALENALAQIAGEAVSTIVAGRTDTGVHATAQVVHFDTTAARPQQAWIRGVNAHLPEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPVRSPLLKNRAGWTHLKLDIGQMRQAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSAGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYLTGVDYPEAYGIIRPQIPEWL
>NZ_JWNH01000005.1|WP_002225684.1|20325_21018_+|M48-family-metallopeptidase
MTAFVHTLSDGMELTVEIKRRAKKNLIIRPAGTHTVRISVPPCFSVSALNRWLYENEAVLRQTLAKTPPPQTAENRLPESILFHGRQLALTAHQDTQILLMPSEIRVPEGAPEKQLALLRDFLERQAHSYLIPRLERHARTTQLFPASSSLTSAKTFWGVCRKTTGIRFNWRLVGAPEYVADYVCIHELCHLAHPDHSPAFWELTRRFAPYTPKAKQWLKIHGRELFALG
>NZ_JWNH01000005.1|WP_002225683.1|19585_20329_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MLIIRNLIYWLILCSTLIFLFPFMLLASPFRDGAHKMARVWVGILNWSLKHIVGLKYRIIGAENIPDRPAVICAKHQSGWETLALQDIFPPQVYVAKRELFKIPFFGWGLKLVKTIGIDRNNRREANEQLIKQGLVRKNEGYWITIFPEGTRLAPGKRGKYKLGGARMAKMFEMDIVPVALNSGEFWPKNSFLKYPGEITVVICPTIPHASGSEAELMEKCEHLIETQQPLISGAGPFAAKMPSETA
>NZ_JWNH01000005.1|WP_002224688.1|18993_19557_+|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase
MKLIILDRDGVINQDRDDFVKSVDEWIPVEGSMDAVAFLTQAGYTVAVATNQSGIGRKYFTVQNLTEMHAKMHRLVRQAGGEINGIWFCPHTDADNCNCRKPKPGMIEDIIGRFNAQASETWLVGDSLRDLQAIDAVGGKPALVLTGKGKKTLSQHGHELPEHTQVFDTLLDFSQYIMQENTAPQAD
>NZ_JWNH01000005.1|WP_002225681.1|16268_17510_+|tryptophan-permease
MPNKTPSLFGGAMIIAGTVIGAGMLANPTATSGVWFTGSLAVLLYTWFSMLSSGLMILEVNTHYPHGASFDTMVKDLLGRGWNIINGIAVAFVLYLLTYAYIFVGGDLTAKGLGSAAGGDVSLTVGQLVFFGILAFCVWASARLVDRFTGVLIGGMVLTFIWAAGGLIADAKPSVLFDTQAPAGTNYWIYAATALPVCLASFGFHGNVSSLLKYFKGDAPKVAKSIWTGTLIALVIYVLWQTAIQGNLPRNEFAPVIAAEGQVSVLIETLSKFAQTGNMDKILSLFSYMAIATSFLGVTLGLFDYIADIFKWNDSISGRTKTAALTFLPPLISCLLFPTGFVTAIGYVGLAATVWTGIIPAMLLYRSRKKFGAGKTYKVYGGLWLMVWVFLFGIVNIAAQVLSQMELVPVFKG
>NZ_JWNH01000005.1|WP_002221694.1|15388_16117_-|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG
MGGKMSDKKYNVDEGEIAKFSRIADKWWDKSGEFKTLHDINPLRLDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLHAALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIVRACANLVKPDGMVFFSTINKNPKSYLHLIVAAEYLLKFVPKGTHDWKKFIAPAELARMCRQAGLDVADTKGMTYHVLSQTYALCDSTDVNYMFACRPAF
>NZ_JWNH01000005.1|WP_002218156.1|14434_15352_-|homoserine-kinase
MSVYTSVSDDEMRGFLSGYDLGEFVSLQGIAQGITNSNYFLTTTSGRYVLTVFEVLKQEELPFFLELNRHLSMKGVAVAAPVARKDGRLDSVLAGKPACLVACLKGSDTALPTAEQCFHTGAMLAKMHLAAADFPLEMENPRYNAWWTEACARLLPVLSQDDAALLCSEIDALKDNLGNHLPSGIIHADLFKDNVLLDGGQVSGFIDFYYACRGNFMYDLAIAVNDWARTADNKLDEALKKAFIGGYEGVRPLSAEEKAYFPTAQRAGCIRFWVSRLLDFHFPQAGEMTFIKDPNAFRNLLLSLG
>NZ_JWNH01000005.1|WP_127281535.1|28740_30642_-|phosphomethylpyrimidine-synthase-ThiC
MTTPKKTAKTSGNEARELADLSEDIGIRFKYPNSERVYLQGSRDDIRVPLREIRQDDTYTAQGAEANPPIPVYDTSGVYGDPAAHIDLKQGLPHIRTAWLDERGDTEILPKLSSEYGIERAHDPKTAHLRFNQITRPRRAKVGCNVTQLHYARQGIITPEMEFVAIRERLKLDELSQKPEYAKLLEQHAGQSFGANIPTHPDQITPEFVRQEIAAGRAIIPANINHPELEPMIIGRNFRVKINGNLGNSAVTSSLTEEVEKMVWSLRWGADTIMDLSTGAHIHETREWIIRNAPVPIGTVPIYQALEKTGGIAEDLTWDLFRDTLIEQAEQGVDYFTIHAGVLLRYVPMTANRLTGIVSRGGSIMAKWCLAHHRENFLYTHFDEICEIMKAYDVSFSLGDGLRPGCIADANDESQFAELHTLGELTDKAWKHDVQVMIEGPGHVPLQRVKENMTEELQHCFEAPFYTLGPLVTDIAPGYDHITSGIGAANIGWYGTAMLCYVTPKEHLGLPDKEDVRTGIITYKLAAHAADLAKGWPGAQLRDNALSKARFEFRWRDQFRLSLDPERAESFHDETLPAEGAKIAHFCSMCGPKFCSMKITQEVRDYADKQKAQRQGMEEKAVEFVKKGAKIYS
>NZ_JWNH01000005.1|WP_127281537.1|31239_32115_+|NUDIX-domain-containing-protein
MPTVRFTESVSKHDLDALFEWAKASYGAESCWKTLYLNGLPLGNLSPEWAERVKKDWEAGCSESSDGIFLNAGGWPDMGGRLQYLACGWHCARLLDGWRNECFDLTDGGGNPLFALERAAFRPFGLLSRAVHLNGLTESDGRWHFWIGRRSPHKAVDPDKLDNTAAGGVSSGEMPSEAVCRESSEEAGLDKTLFPLIRPVSRLHSLRPVSRGVHNEILYVFDAILPETFLPENQDGEVAGFEKMDIGGLLDAMLSGNMMHDAQLVTLDAFCRYGLIDAAHPLSEWLDGIRL
>NZ_JWNH01000005.1|WP_127281538.1|32123_33062_+|ABC-transporter-ATP-binding-protein
MLELNGLCKRFGGKTVADDICLTVGRGKILAVLGRSGCGKSTLLNMIAGIVRPDGGEIWLNGENITRMPPEKRRISLMFQDYALFPHMSALENAAFGLKMQKMPKAEAESLAMAALAEVGLENEAHRKPEKLSGGEKQRLALVRALVVRPSLLLLDESFSSLDTHLRGTLRRMTAERIRNGGIPAVLVTHSPEEACTTADEIAVMHEGRILQYGTPETLVKTPACVQVARLMGLPNTDDDRHIPQHAVRFDQDGIECRVLSRICLPESFSLSVLHPEHGILWLNLDMPHAGEISGNDTVRIHIEDREIVRFR
>NZ_JWNH01000005.1|WP_153559634.1|33078_33288_+|hypothetical-protein
MPSENLSDGIFLPKQPYFLSGLQNLSETTETTLPSFPQKRESRTQHGKNLSEATTIFSSSFPRRRESRT
>NZ_JWNH01000005.1|WP_002230041.1|34335_36111_-|phosphoenolpyruvate--protein-phosphotransferase
MSIVLHGVAAGKGIAVGCAHLIARGTEEVPQYDVAEADTDAEAERFDAAVKATRKELEQLRSAIPENAPTELGAFISLHLMLLTDVTLSREPVDILREQKINAEWALKQQSDKLAAQFDNMDDAYLRERKQDMLQVVRRIHNNLIGQGNELEVADNLFDETVLIANDLSPADTVLFKEQRIAAFVTDAGGPTGHTAILGRSLDIPSVVGLHNARKLITEGETVIVDGINGVLIIAPDESVLNEYRRRAREYRSHKRDLNKLKKTAAATADGVCIELVGNIESAEDVKPLHNLGADGIGLFRSEFLYLNRDTMPSEDEQYEVYSAIVKKMKGKSVTIRTVDLGVDKNPRWFGKNSTPNGSLNPALGMTGIRLCLAEPVMFRTQMRAILRAAVHGPVRMMWPMITSVSEVRQCLIHLDTAQRQLAERGDAFGKVGIGCMIEIPSAALTVGSILKLVDFISVGTNDLIQYILSVDRGDDSVSHLYQPGHPAVLKMLQHVIRTANRMDKDVSVCGEMAGDTAFTRVLLGMGLRRFSMNPNNILPVKNIILHSNVGQLENEIAKIVRCEDEEKAEKLIKQINSVSVEEEADFKGRK
>NZ_JWNH01000005.1|WP_002218178.1|36110_36380_-|HPr-family-phosphocarrier-protein
MLKQSIEIINKLGLHARASNKFTQTASQFKSEVWVTKNDSRVNGKSIMGLMMLAAAKGTVIELETDGADEAEAMRALTDLINGYFGEGE
>NZ_JWNH01000005.1|WP_002214994.1|36448_36886_-|PTS-sugar-transporter-subunit-IIA
MIGLLIITHETIGEAYRKLAHHFFPGGLPENVRILGVQPTEDQDDIINNAIAALQEFPDNDGVLIMTDIFGATPCNAARRLVRENKSAILTGLNAPMMVKAVQYSPAAEDLAAFTECVREAAVKGIFAITSAPEDLVCRRSGDAV
>NZ_JWNH01000005.1|WP_002218180.1|36966_37530_-|hypoxanthine-guanine-phosphoribosyltransferase
MTDLETKRLETQAMLENADLLFDQGQCRAALQKVADEITRDLGGKYPLLLPVMGGAVVFTGQLLPLLRFPLDFDYVHVSRYGDKLEGGAFNWKRMPDAEQIRGRHVVVLDDILDEGHTMSAIQAKLLEMGAASCRAAVFANKLIDKPKPIRADYVGLDVPNRYVFGYGMDAAGCWRNLGEIYALDGK
>NZ_JWNH01000005.1|WP_002230045.1|37598_38423_-|DNA-ligase
MIKKTIGGIIPIFTAVFIPASAGAADLMLAQEYKGQDIAGWAMSEKLDGVRAYWDGKHLISRQGYAFTPPKGFTAQFPPYPLDGELYSGRGQFEQISATVRSVSSDWRGIRLHVFDVPKAQGNLYQRLAVATQWLKTHPNAPITIIPQTKVRDRQHAMDFLKQIEAQGGEGVMLRQPESRYSGGRSSQLLKLKSQYDDECTVTRHYEGKGRNAGRLGAIGCKNRHGEFRIGSGFKDKDRDNPPKIGTLITYRYRGFTRKGTPKFATFVRVRTDR
>NZ_JWNH01000005.1|WP_127281554.1|38514_39147_+|MBL-fold-metallo-hydrolase
MTLRYEIFPVTPFRQNCTLIWDDESGEAVLTDVGGDVPFLLQALANRKLTLTAIWLTHGHLDHAGGVVEMLKTHKVPVLGSHREDEFLLQSLPQTTAQYGFPVSPAFAPNRWLEEGETLTVGRYAFQVLHIPGHTPGHIVFYCAEAELLIAGDVLFYETIGRTDFPRGNHADLINNIRNKLFTLPETVQVVAGHGRMTSIGHEKRHNPFF

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Crispr_ID: NZ_JWNH01000005_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JWNH01000005_3

28134-28307

Orphan

I-E

Consensus_repeat	Method
TTCGTCATTCCCGCGCAGGCGGGAATCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_JWNH01000005_3

>merge|NZ_JWNH01000005|3|28134-28307|CRISPRCasFinder
TTCGTCATTCCCGCGCAGGCGGGAATCCGGTTCGTTCGGTTTCGCTTGTTTTAAGTTTCGGGTAACTTCCACTTCGTCATTCCCGCGCAGGCGGGAATCCAGTGCGTTGAGTTTCAGCTATTTAGAATAAATTTTGAAACTTTAACCCCGTCATTCCCACGAAAGTGGGAATCC

>NZ_JWNH01000005|3|3|28134-28307|CRISPRCasFinder
TTCGTCATTCCCGCGCAGGCGGGAATCC	GGTTCGTTCGGTTTCGCTTGTTTTAAGTTTCGGGTAACTTCCAC
TTCGTCATTCCCGCGCAGGCGGGAATCC	AGTGCGTTGAGTTTCAGCTATTTAGAATAAATTTTGAAACTTTAAC
CCCGTCATTCCCACGAAAGTGGGAATCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_JWNH01000005.1\|WP_002214994.1\|36448_36886_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225446
NZ_JWNH01000005.1\|WP_002225683.1\|19585_20329_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_JWNH01000005.1\|WP_002218169.1\|22904_23144_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225215
NZ_JWNH01000005.1\|WP_127281534.1\|21984_22782_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_JWNH01000005.1\|WP_153559634.1\|33078_33288_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000005.1\|WP_127281537.1\|31239_32115_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239648
NZ_JWNH01000005.1\|WP_002230045.1\|37598_38423_-\|DNA-ligase	unknown	unknown	gnl\|CDD\|181662
NZ_JWNH01000005.1\|WP_002225681.1\|16268_17510_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_JWNH01000005.1\|WP_002230041.1\|34335_36111_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_JWNH01000005.1\|WP_002218180.1\|36966_37530_-\|hypoxanthine-guanine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181675
NZ_JWNH01000005.1\|WP_002221694.1\|15388_16117_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	unknown	unknown	gnl\|CDD\|235350
NZ_JWNH01000005.1\|WP_002224688.1\|18993_19557_+\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	unknown	unknown	gnl\|CDD\|236354
NZ_JWNH01000005.1\|WP_002218178.1\|36110_36380_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|224836
NZ_JWNH01000005.1\|WP_002218170.1\|23137_23455_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_JWNH01000005.1\|WP_118834833.1\|25607_26597_+\|porin	unknown	unknown	gnl\|CDD\|365988
NZ_JWNH01000005.1\|WP_002225684.1\|20325_21018_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|224368
NZ_JWNH01000005.1\|WP_127281554.1\|38514_39147_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293823
NZ_JWNH01000005.1\|WP_127281538.1\|32123_33062_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_JWNH01000005.1\|WP_002218156.1\|14434_15352_-\|homoserine-kinase	unknown	unknown	gnl\|CDD\|273351
NZ_JWNH01000005.1\|WP_127281535.1\|28740_30642_-\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451

Protein	Function_ID	Function_description	E-value
NZ_JWNH01000005.1\|WP_002225683.1\|19585_20329_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	5.61916e-47
NZ_JWNH01000005.1\|WP_002218169.1\|22904_23144_+\|hypothetical-protein	gnl\|CDD\|225215	COG2336, MazE, Growth regulator [Signal transduction mechanisms].	1.71634e-25
NZ_JWNH01000005.1\|WP_127281534.1\|21984_22782_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	5.77574e-130
NZ_JWNH01000005.1\|WP_002230041.1\|34335_36111_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_JWNH01000005.1\|WP_127281537.1\|31239_32115_+\|NUDIX-domain-containing-protein	gnl\|CDD\|239648	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.41784e-85
NZ_JWNH01000005.1\|WP_002230045.1\|37598_38423_-\|DNA-ligase	gnl\|CDD\|181662	PRK09125, PRK09125, DNA ligase; Provisional.	3.62998e-151
NZ_JWNH01000005.1\|WP_002225681.1\|16268_17510_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	8.15364e-145
NZ_JWNH01000005.1\|WP_002214994.1\|36448_36886_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	5.92028e-36
NZ_JWNH01000005.1\|WP_002218180.1\|36966_37530_-\|hypoxanthine-guanine-phosphoribosyltransferase	gnl\|CDD\|181675	PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase; Provisional.	9.61403e-98
NZ_JWNH01000005.1\|WP_002221694.1\|15388_16117_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.08276e-148
NZ_JWNH01000005.1\|WP_002224688.1\|18993_19557_+\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	gnl\|CDD\|236354	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase.	7.09175e-105
NZ_JWNH01000005.1\|WP_002218178.1\|36110_36380_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|224836	COG1925, FruB, Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism].	3.69582e-35
NZ_JWNH01000005.1\|WP_002218170.1\|23137_23455_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	1.11029e-27
NZ_JWNH01000005.1\|WP_118834833.1\|25607_26597_+\|porin	gnl\|CDD\|365988	pfam00267, Porin_1, Gram-negative porin.	3.77654e-84
NZ_JWNH01000005.1\|WP_002225684.1\|20325_21018_+\|M48-family-metallopeptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	4.18048e-70
NZ_JWNH01000005.1\|WP_127281554.1\|38514_39147_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293823	cd07737, YcbL-like_MBL-fold, Salmonella enterica serovar typhimurium YcbL and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes Salmonella enterica serovar typhimurium YcbL which has type II hydroxyacylglutathione hydrolase (EC 3.1.2.6, also known as glyoxalase II) activity, and has a single metal ion binding site, and Thermus thermophilus TTHA1623 which does not have GLX2 activity and has two metal ion binding sites with a glyoxalase II-type metal coordination. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	5.8599e-113
NZ_JWNH01000005.1\|WP_127281538.1\|32123_33062_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	3.80526e-124
NZ_JWNH01000005.1\|WP_002218156.1\|14434_15352_-\|homoserine-kinase	gnl\|CDD\|273351	TIGR00938, homoserine_kinase_homolog, homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase. [Amino acid biosynthesis, Aspartate family].	0
NZ_JWNH01000005.1\|WP_127281535.1\|28740_30642_-\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0

>NZ_JWNH01000005.1|WP_118834833.1|25607_26597_+|porin
MKKSLIALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDLGNGLKAIWQVEQKASIVGTDSGWGNRQSFIGLKGGFGKLRVGRLNSVLKDTGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHQNVDDVKIEKYQIHRLVSGYDNDALYASVAVQQQDAKLVEDNSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSFDAADYTNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFVSTAGGVGLRHKF
>NZ_JWNH01000005.1|WP_002218170.1|23137_23455_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MVVRGGIYLVSLDPTVGSEIKKTRPCVVVSPPEIHNYLKTVLIVPMTSGSRPAPFRVNVRFQDKDGLLLPEQIRAVDKAGLVKHLGNLDNSTAEKLFAVLQEMFA
>NZ_JWNH01000005.1|WP_002218169.1|22904_23144_+|hypothetical-protein
MILNIRKMGNSQGVILPKSLLGQIGAVDSLAVTVEKGNIILSCPTVRRGWAEAAAMLVETEQEHFFSEIENEADKEWIW
>NZ_JWNH01000005.1|WP_127281534.1|21984_22782_+|tRNA-pseudouridine(38-40)-synthase-TruA
MDTAQKQRWAITLSYDGSRFYGWQKQAGGVLTVQTALENALAQIAGEAVSTIVAGRTDTGVHATAQVVHFDTTAARPQQAWIRGVNAHLPEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPVRSPLLKNRAGWTHLKLDIGQMRQAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSAGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYLTGVDYPEAYGIIRPQIPEWL
>NZ_JWNH01000005.1|WP_002225684.1|20325_21018_+|M48-family-metallopeptidase
MTAFVHTLSDGMELTVEIKRRAKKNLIIRPAGTHTVRISVPPCFSVSALNRWLYENEAVLRQTLAKTPPPQTAENRLPESILFHGRQLALTAHQDTQILLMPSEIRVPEGAPEKQLALLRDFLERQAHSYLIPRLERHARTTQLFPASSSLTSAKTFWGVCRKTTGIRFNWRLVGAPEYVADYVCIHELCHLAHPDHSPAFWELTRRFAPYTPKAKQWLKIHGRELFALG
>NZ_JWNH01000005.1|WP_002225683.1|19585_20329_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MLIIRNLIYWLILCSTLIFLFPFMLLASPFRDGAHKMARVWVGILNWSLKHIVGLKYRIIGAENIPDRPAVICAKHQSGWETLALQDIFPPQVYVAKRELFKIPFFGWGLKLVKTIGIDRNNRREANEQLIKQGLVRKNEGYWITIFPEGTRLAPGKRGKYKLGGARMAKMFEMDIVPVALNSGEFWPKNSFLKYPGEITVVICPTIPHASGSEAELMEKCEHLIETQQPLISGAGPFAAKMPSETA
>NZ_JWNH01000005.1|WP_002224688.1|18993_19557_+|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase
MKLIILDRDGVINQDRDDFVKSVDEWIPVEGSMDAVAFLTQAGYTVAVATNQSGIGRKYFTVQNLTEMHAKMHRLVRQAGGEINGIWFCPHTDADNCNCRKPKPGMIEDIIGRFNAQASETWLVGDSLRDLQAIDAVGGKPALVLTGKGKKTLSQHGHELPEHTQVFDTLLDFSQYIMQENTAPQAD
>NZ_JWNH01000005.1|WP_002225681.1|16268_17510_+|tryptophan-permease
MPNKTPSLFGGAMIIAGTVIGAGMLANPTATSGVWFTGSLAVLLYTWFSMLSSGLMILEVNTHYPHGASFDTMVKDLLGRGWNIINGIAVAFVLYLLTYAYIFVGGDLTAKGLGSAAGGDVSLTVGQLVFFGILAFCVWASARLVDRFTGVLIGGMVLTFIWAAGGLIADAKPSVLFDTQAPAGTNYWIYAATALPVCLASFGFHGNVSSLLKYFKGDAPKVAKSIWTGTLIALVIYVLWQTAIQGNLPRNEFAPVIAAEGQVSVLIETLSKFAQTGNMDKILSLFSYMAIATSFLGVTLGLFDYIADIFKWNDSISGRTKTAALTFLPPLISCLLFPTGFVTAIGYVGLAATVWTGIIPAMLLYRSRKKFGAGKTYKVYGGLWLMVWVFLFGIVNIAAQVLSQMELVPVFKG
>NZ_JWNH01000005.1|WP_002221694.1|15388_16117_-|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG
MGGKMSDKKYNVDEGEIAKFSRIADKWWDKSGEFKTLHDINPLRLDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLHAALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIVRACANLVKPDGMVFFSTINKNPKSYLHLIVAAEYLLKFVPKGTHDWKKFIAPAELARMCRQAGLDVADTKGMTYHVLSQTYALCDSTDVNYMFACRPAF
>NZ_JWNH01000005.1|WP_002218156.1|14434_15352_-|homoserine-kinase
MSVYTSVSDDEMRGFLSGYDLGEFVSLQGIAQGITNSNYFLTTTSGRYVLTVFEVLKQEELPFFLELNRHLSMKGVAVAAPVARKDGRLDSVLAGKPACLVACLKGSDTALPTAEQCFHTGAMLAKMHLAAADFPLEMENPRYNAWWTEACARLLPVLSQDDAALLCSEIDALKDNLGNHLPSGIIHADLFKDNVLLDGGQVSGFIDFYYACRGNFMYDLAIAVNDWARTADNKLDEALKKAFIGGYEGVRPLSAEEKAYFPTAQRAGCIRFWVSRLLDFHFPQAGEMTFIKDPNAFRNLLLSLG
>NZ_JWNH01000005.1|WP_127281535.1|28740_30642_-|phosphomethylpyrimidine-synthase-ThiC
MTTPKKTAKTSGNEARELADLSEDIGIRFKYPNSERVYLQGSRDDIRVPLREIRQDDTYTAQGAEANPPIPVYDTSGVYGDPAAHIDLKQGLPHIRTAWLDERGDTEILPKLSSEYGIERAHDPKTAHLRFNQITRPRRAKVGCNVTQLHYARQGIITPEMEFVAIRERLKLDELSQKPEYAKLLEQHAGQSFGANIPTHPDQITPEFVRQEIAAGRAIIPANINHPELEPMIIGRNFRVKINGNLGNSAVTSSLTEEVEKMVWSLRWGADTIMDLSTGAHIHETREWIIRNAPVPIGTVPIYQALEKTGGIAEDLTWDLFRDTLIEQAEQGVDYFTIHAGVLLRYVPMTANRLTGIVSRGGSIMAKWCLAHHRENFLYTHFDEICEIMKAYDVSFSLGDGLRPGCIADANDESQFAELHTLGELTDKAWKHDVQVMIEGPGHVPLQRVKENMTEELQHCFEAPFYTLGPLVTDIAPGYDHITSGIGAANIGWYGTAMLCYVTPKEHLGLPDKEDVRTGIITYKLAAHAADLAKGWPGAQLRDNALSKARFEFRWRDQFRLSLDPERAESFHDETLPAEGAKIAHFCSMCGPKFCSMKITQEVRDYADKQKAQRQGMEEKAVEFVKKGAKIYS
>NZ_JWNH01000005.1|WP_127281537.1|31239_32115_+|NUDIX-domain-containing-protein
MPTVRFTESVSKHDLDALFEWAKASYGAESCWKTLYLNGLPLGNLSPEWAERVKKDWEAGCSESSDGIFLNAGGWPDMGGRLQYLACGWHCARLLDGWRNECFDLTDGGGNPLFALERAAFRPFGLLSRAVHLNGLTESDGRWHFWIGRRSPHKAVDPDKLDNTAAGGVSSGEMPSEAVCRESSEEAGLDKTLFPLIRPVSRLHSLRPVSRGVHNEILYVFDAILPETFLPENQDGEVAGFEKMDIGGLLDAMLSGNMMHDAQLVTLDAFCRYGLIDAAHPLSEWLDGIRL
>NZ_JWNH01000005.1|WP_127281538.1|32123_33062_+|ABC-transporter-ATP-binding-protein
MLELNGLCKRFGGKTVADDICLTVGRGKILAVLGRSGCGKSTLLNMIAGIVRPDGGEIWLNGENITRMPPEKRRISLMFQDYALFPHMSALENAAFGLKMQKMPKAEAESLAMAALAEVGLENEAHRKPEKLSGGEKQRLALVRALVVRPSLLLLDESFSSLDTHLRGTLRRMTAERIRNGGIPAVLVTHSPEEACTTADEIAVMHEGRILQYGTPETLVKTPACVQVARLMGLPNTDDDRHIPQHAVRFDQDGIECRVLSRICLPESFSLSVLHPEHGILWLNLDMPHAGEISGNDTVRIHIEDREIVRFR
>NZ_JWNH01000005.1|WP_153559634.1|33078_33288_+|hypothetical-protein
MPSENLSDGIFLPKQPYFLSGLQNLSETTETTLPSFPQKRESRTQHGKNLSEATTIFSSSFPRRRESRT
>NZ_JWNH01000005.1|WP_002230041.1|34335_36111_-|phosphoenolpyruvate--protein-phosphotransferase
MSIVLHGVAAGKGIAVGCAHLIARGTEEVPQYDVAEADTDAEAERFDAAVKATRKELEQLRSAIPENAPTELGAFISLHLMLLTDVTLSREPVDILREQKINAEWALKQQSDKLAAQFDNMDDAYLRERKQDMLQVVRRIHNNLIGQGNELEVADNLFDETVLIANDLSPADTVLFKEQRIAAFVTDAGGPTGHTAILGRSLDIPSVVGLHNARKLITEGETVIVDGINGVLIIAPDESVLNEYRRRAREYRSHKRDLNKLKKTAAATADGVCIELVGNIESAEDVKPLHNLGADGIGLFRSEFLYLNRDTMPSEDEQYEVYSAIVKKMKGKSVTIRTVDLGVDKNPRWFGKNSTPNGSLNPALGMTGIRLCLAEPVMFRTQMRAILRAAVHGPVRMMWPMITSVSEVRQCLIHLDTAQRQLAERGDAFGKVGIGCMIEIPSAALTVGSILKLVDFISVGTNDLIQYILSVDRGDDSVSHLYQPGHPAVLKMLQHVIRTANRMDKDVSVCGEMAGDTAFTRVLLGMGLRRFSMNPNNILPVKNIILHSNVGQLENEIAKIVRCEDEEKAEKLIKQINSVSVEEEADFKGRK
>NZ_JWNH01000005.1|WP_002218178.1|36110_36380_-|HPr-family-phosphocarrier-protein
MLKQSIEIINKLGLHARASNKFTQTASQFKSEVWVTKNDSRVNGKSIMGLMMLAAAKGTVIELETDGADEAEAMRALTDLINGYFGEGE
>NZ_JWNH01000005.1|WP_002214994.1|36448_36886_-|PTS-sugar-transporter-subunit-IIA
MIGLLIITHETIGEAYRKLAHHFFPGGLPENVRILGVQPTEDQDDIINNAIAALQEFPDNDGVLIMTDIFGATPCNAARRLVRENKSAILTGLNAPMMVKAVQYSPAAEDLAAFTECVREAAVKGIFAITSAPEDLVCRRSGDAV
>NZ_JWNH01000005.1|WP_002218180.1|36966_37530_-|hypoxanthine-guanine-phosphoribosyltransferase
MTDLETKRLETQAMLENADLLFDQGQCRAALQKVADEITRDLGGKYPLLLPVMGGAVVFTGQLLPLLRFPLDFDYVHVSRYGDKLEGGAFNWKRMPDAEQIRGRHVVVLDDILDEGHTMSAIQAKLLEMGAASCRAAVFANKLIDKPKPIRADYVGLDVPNRYVFGYGMDAAGCWRNLGEIYALDGK
>NZ_JWNH01000005.1|WP_002230045.1|37598_38423_-|DNA-ligase
MIKKTIGGIIPIFTAVFIPASAGAADLMLAQEYKGQDIAGWAMSEKLDGVRAYWDGKHLISRQGYAFTPPKGFTAQFPPYPLDGELYSGRGQFEQISATVRSVSSDWRGIRLHVFDVPKAQGNLYQRLAVATQWLKTHPNAPITIIPQTKVRDRQHAMDFLKQIEAQGGEGVMLRQPESRYSGGRSSQLLKLKSQYDDECTVTRHYEGKGRNAGRLGAIGCKNRHGEFRIGSGFKDKDRDNPPKIGTLITYRYRGFTRKGTPKFATFVRVRTDR
>NZ_JWNH01000005.1|WP_127281554.1|38514_39147_+|MBL-fold-metallo-hydrolase
MTLRYEIFPVTPFRQNCTLIWDDESGEAVLTDVGGDVPFLLQALANRKLTLTAIWLTHGHLDHAGGVVEMLKTHKVPVLGSHREDEFLLQSLPQTTAQYGFPVSPAFAPNRWLEEGETLTVGRYAFQVLHIPGHTPGHIVFYCAEAELLIAGDVLFYETIGRTDFPRGNHADLINNIRNKLFTLPETVQVVAGHGRMTSIGHEKRHNPFF

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Crispr_ID: NZ_JWNH01000005_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JWNH01000005_4

122832-122937

Orphan

Consensus_repeat	Method
CGAAGGCAAATGCGGCGAGGGCAAATGCGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_JWNH01000005_4

>merge|NZ_JWNH01000005|4|122832-122937|CRISPRCasFinder
CGAAGGCAAATGCGGCGAGGGCAAATGCGGTGCGACCGTAAAAAAAACCCACAAACACACCAAAGCATCTAAAGCCAAGGCCAAATCTGCCGAAGGCAAATGCGGC

>NZ_JWNH01000005|4|4|122832-122937|CRISPRCasFinder
CGAAGGCAAATGCGGCGAGGGCAAATGCGGT	GCGACCGTAAAAAAAACCCACAAACACACCAAAGCATCTAAAGC
CAAGGCCAAATCTGCCGAAGGCAAATGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_JWNH01000005.1\|WP_002215151.1\|124676_125264_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171564
NZ_JWNH01000005.1\|WP_050890938.1\|106590_106806_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000005.1\|WP_002218247.1\|122129_122579_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_JWNH01000005.1\|WP_002215143.1\|119688_120792_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_JWNH01000005.1\|WP_033908844.1\|110125_111952_+\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NZ_JWNH01000005.1\|WP_079889625.1\|123908_124655_+\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760
NZ_JWNH01000005.1\|WP_127281556.1\|106880_108353_-\|transferrin-binding-protein-like-solute-binding-protein	unknown	unknown	gnl\|CDD\|366565
NZ_JWNH01000005.1\|WP_127281551.1\|104832_106176_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_JWNH01000005.1\|WP_118822953.1\|117321_118779_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273342
NZ_JWNH01000005.1\|WP_127281552.1\|112006_116176_+\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|225463
NZ_JWNH01000005.1\|WP_002221731.1\|108464_109694_-\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
NZ_JWNH01000005.1\|WP_079889624.1\|120894_121788_-\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|224666
NZ_JWNH01000005.1\|WP_003688111.1\|125680_126121_+\|hypothetical-protein	unknown	unknown	unknown
NZ_JWNH01000005.1\|WP_033908471.1\|125236_125449_+\|zf-HC2-domain-containing-protein	unknown	unknown	gnl\|CDD\|379219
NZ_JWNH01000005.1\|WP_079889669.1\|123076_123919_+\|DUF692-family-protein	unknown	unknown	gnl\|CDD\|225761

Protein	Function_ID	Function_description	E-value
NZ_JWNH01000005.1\|WP_002215151.1\|124676_125264_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171564	PRK12532, PRK12532, RNA polymerase sigma factor; Provisional.	2.51316e-126
NZ_JWNH01000005.1\|WP_002218247.1\|122129_122579_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	3.78246e-27
NZ_JWNH01000005.1\|WP_002215143.1\|119688_120792_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_JWNH01000005.1\|WP_033908844.1\|110125_111952_+\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	9.12233e-174
NZ_JWNH01000005.1\|WP_079889625.1\|123908_124655_+\|DUF2063-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	4.90072e-114
NZ_JWNH01000005.1\|WP_127281556.1\|106880_108353_-\|transferrin-binding-protein-like-solute-binding-protein	gnl\|CDD\|366565	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B. Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis, and cell adherence. Pathogenic Gram-negative bacteria within the Neisseriaceae and Pasteurellaceae families rely on a specialized uptake system, characterized by an essential surface receptor complex that acquires iron from host transferrin (Tf) and transports the iron across the outer membrane. They have an iron uptake system composed of surface exposed lipoprotein, Tf-binding protein B (TbpB), and an integral outer-membrane protein, Tf-binding protein A (TbpA), that together function to extract iron from the host iron binding glycoprotein (Tf). TbpB is a bilobed (N and C lobe) lipid-anchored protein with each lobe consisting of an eight-stranded beta barrel flanked by a handle domain made up of four (N lobe) or eight (C lobe) beta strands. TbpB extends from the outer membrane surface by virtue of an N-terminal peptide region that is anchored to the outer membrane by fatty acyl chains on the N-terminal cysteine and is involved in the initial capture of iron-loaded Tf. This domain family is found in C and N lobe eight stranded beta barrel region of TbpB proteins. The eight-stranded barrel domains in N and C lobe draw comparisons to eight-stranded beta barrel outer-membrane protein W (OmpW). However, the barrel domains of TbpB have the hydrophobic residues line the inner surface of the beta barrels to create a stable hydrophobic core.	2.03964e-16
NZ_JWNH01000005.1\|WP_127281551.1\|104832_106176_+\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_JWNH01000005.1\|WP_118822953.1\|117321_118779_+\|MFS-transporter	gnl\|CDD\|273342	TIGR00924, putative_Di/Tri_peptide_transporter, amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_JWNH01000005.1\|WP_127281552.1\|112006_116176_+\|translocation/assembly-module-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_JWNH01000005.1\|WP_002221731.1\|108464_109694_-\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
NZ_JWNH01000005.1\|WP_079889624.1\|120894_121788_-\|patatin-like-phospholipase-family-protein	gnl\|CDD\|224666	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	1.02449e-62
NZ_JWNH01000005.1\|WP_033908471.1\|125236_125449_+\|zf-HC2-domain-containing-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	0.000221972
NZ_JWNH01000005.1\|WP_079889669.1\|123076_123919_+\|DUF692-family-protein	gnl\|CDD\|225761	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown].	5.1653e-151

>NZ_JWNH01000005.1|WP_002218247.1|122129_122579_+|DoxX-family-protein
MKIGTTWQTASAMLVLRLFAAYEFLESGLQKWNGENWFSEINDQFPFPFNLLPDALNWNLAMYAELLLPVLLLLGLATRLSALGLMVVTAVAWAAVHAGSGYNVCDNGYKMALIYIVVLIPLLFQGAGGWSLDTLLKKRFCPQCRLKQD
>NZ_JWNH01000005.1|WP_079889624.1|120894_121788_-|patatin-like-phospholipase-family-protein
MVTFSKIRPLLAIAAAVLLAACGTAGNNAARKQVQTAKPAAVVGLALGGGASKGFAHVGIIKVLKENGIPVKVVTGTSAGSIVGSLFASGMSPDRLELEAEILGKTDLVDLTLSTSGFIKGEKLQNYINRKVGGRQIQQFPIKFAAVATDFETGKAVAFNQGNAGQAVRASAAIPNVFQPVIIGRHTYVDGGLSQPVPVSAARRQGANFVIAVDISARPGKNISQGFFSYLDQTLNVMSVSALQNELGQADVVIKPQVLDLGAVGGFDQKKRAIQLGEEAARAALPEIKRKLAAYRY
>NZ_JWNH01000005.1|WP_002215143.1|119688_120792_-|peptide-chain-release-factor-2
MEAEVINQLNNTLNDLEKRSEDIRVYMDYQGKKDRLEEVIGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVEENDEEGFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDWAGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRYSPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWGSQIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQGV
>NZ_JWNH01000005.1|WP_118822953.1|117321_118779_+|MFS-transporter
MSRHPAPTGEKTFFGHPFQLSTLFHIELWERFSFYGMQGILLIYLYYTADKGGLGIDKTLAGGIVGAYSGSVYLSTILGAWFADRVWGAEKTLFLSGIVVMLGHIVLAAAPGLYGLLIGLIFIALGSGGVKSTASSMVGALYEQDEMRPLRDAGFSIFYIAINIGGFLGPLLTGLLQENIGFHYGFGAAAVGMAFGLWRYSLGRKNLPHPTVPHPLSKGQGKTAAAVGITLIAALATAIKTGLVNLDNFSGILLSTVILAVIAYFARLLTNPRVSSDNKRHIIAYIPLFLTICMFWAVWFQIYTVATVYFDETVNRTIGSFTVPVAWKDSMQSLWVILFSGLMAAMWTKMGRKQPKTPLKFAMAVFVTGASFLGFVPFISAGTPMPIAVFALIVLAITIGELMISPIALSISTKIAPPLFKTQMVALNFLAFSLGFTLGGVLFEKCYQAGDEIGFYRLLFYIGAATGFLLLLLVPKLNKMLEGTD
>NZ_JWNH01000005.1|WP_127281552.1|112006_116176_+|translocation/assembly-module-TamB
MTDTAPTDTDPTENGTRKMPSEHRPTPPAKKRRPLLKLSAALLSVLILAVCFLGWLAGTEAGLRFGLYQIPSWFGVNISSQNLKGTLLDGFDGDNWSIETEGADLKISRFRFAWKPSELMRRSLHITEISAGDIAIVTKPTPPKEERPPLSLPDSIDLPAAVYLDRFETGKISMGKAFDKQTVYLERLDASYRYDRKGHRLDLKAADTPWSSSSGSASVGLKKPFALDTAIYTKGGLEGKTIHSTARLSGSLKDVRAELAIDGGNIRLSGKSVIHPFAESLDKTLEEVLVKGFNINPAAFVPSLPDAGLNFDLTAIPSFSDGIALEGSLDLENTKAGFADRNGIPVRQVLGGFVIRQDGTVHIGNTSAALLGRGGIRLSGKIDTEKDILDLNIGINSVGAEDVLQTAFKGRLDGSIGIGGTTASPKISWQLGIGTARTDGSLAIASDPANGQRKLVLDTVNIAAGQGSLTAQGYLELFKDRLLKLDIRSRAFDPSRINPQLPAGNINGSINLAGELAKEKFTGKMRFLPGTFNGVPIAGSADIVYESRHLPRAAVDLRLGRNIIKTDGGFGKKGDRLNLNITAPDLSRFGFGLAGSLNVRGHLSGDLDGGIRTFETDLSGAARNLHIGKAADIRSLDFTLKGSPDTSRPIRADIKGSRLSLSGGAAVVDTADLMLDGTGVQHRIRTHAAMTLDGKPFKFDLDASGGINRELTRWKGSIGILDIGGAFNLKLQNRMTLEAGAERVAASAANWQAMGGSLNLQHFSWDKKTGISAKGGAHGLHIAELHNFFKPPFEHNLVLNGDWDVAYGRNARGYLNISRQSGDAVLPGGQALGLNAFSLKTRFQNDRIGILLDGGARFGRINADLGIANAFGGNMANAPLGGRITASLPDLGALKPFLPAAAQNITGSLNAAAQIGGRVGSPSVNAAVNGSSNYGKINGNITVGQSRSFDTAPLGGRLNLTVADAEVFRNFLPVGQTVKGSLNAAVTLGGSIADPHLGGSINGDKLYYRNQTQGIILDNGSLRSHIAGRKWVIDSLKFRHEGTAELSGTVGMENSGPDVDIGAVFDKYRILSRPNRRLTVSGNTRLRYSPQKGISVTGMIKTDQGLFGSQKSSMPSVGDDVIVLGEVKKEAAAPLPVNMNLTLDLNDGIRFSGYGADVTIGGKLTLTAQSGGSVRGVGTVRVIKGRYKAYGQDLDITKGTVSFVGPLNDPNLNIRAERRLSPVGAGVEILGSLNSPRITLTANEPMSEKDKLSWLILNRAGSGSSGDNAALSAAAGALLAGQINDRIGLVDDLGFTSKRSRNAQTGELNPAEQVLTVGKQLTGKLYIGYEYSISSAEQSVKLIYRLTRAIQAVARIGSRSSGGELTYTIRFDRFSGSDKKDSAGNGKGK
>NZ_JWNH01000005.1|WP_033908844.1|110125_111952_+|outer-membrane-protein-assembly-factor
MIKPTALLLPALFFFPHAYAPAADLSENKAAGFALFKNKSPDTESVKLKPKFPVRIDTQDSEIKDMVEEHLPLITQQQEEVLDKEQTGFLAEEAPDNVKTMLRSKGYFSSKVSLTEKDGAYTVHITPGPRTKIANVGVAILGDILSDGNLAEYYRNALENWQQPVGSDFDQDSWENSKTSVLGAVTRKGYPLAKLGNTRAAVNPDTATVDLNVVVDSGRPIAFGDFEITGTQRYPEQIVSGLARFQPGTPYDLDLLLDFQQALEQNGHYSGASVQADFDRLQGDRVPVKVSVTEVKRHKLETGIRLDSEYGLGGKIAYDYYNLFNKGYIGSVVWDMDKYETTLAAGISQPRNYRGNYWTSNVSYNRSTTQNLEKRAFSGGIWYVRDRAGIDARLGAEFLAEGRKIPGSDIDLGNSHATMLTASWKRQLLNNVLHPENGHYLDGKIGTTLGTFLSSTALIRTSARAGYFFTPENKKLGTFIIRGQAGYTLARDNADVPSGLMFRSGGASSVRGYELDSIGLAGPNGSVLPERALLVGSLEYQLPFTRTLSGAVFHDMGDAAANFKRMKLKHGSGLGVRWFSPLAPFSFDIAYGHSDKKIRWHISLGTRF
>NZ_JWNH01000005.1|WP_002221731.1|108464_109694_-|serine/threonine-transporter-SstT
MAFGKSLFHAIGRVSLVRQIAAGLALGIVIGSVSPQLGLAAGLFGSLFVGALKAVAPVLVFILVAATIAQHQKGNKAHIRPIIILYLIGTFSAALTAVIAGMVFPTHIVLAGAGDVSAAPPSGIVEVLKSLLMNLVANPINAIANANYIGILAWALVLGAALRNHGSDVTRQVVADLAEAVSTVVKWIIRFAPLGIFGLVSSTIAETGFGALAGYAKLLAVLLGCMAFIALAVNPAIVWWKIRRNPYPLVFTCLRESGVYAFFTRSSAANIPVNMALAKKLGLHEDTYSISIPLGATVNMGGAAITITVLAMAAAHTQGIQVDFATALLLSLVATVSACGASGVAGGSLLLIPLACSLFGISNDVAMQVVAVGFIIGVIQDSAETALNSSTDVLFTAAADLGRQRNRAE
>NZ_JWNH01000005.1|WP_127281556.1|106880_108353_-|transferrin-binding-protein-like-solute-binding-protein
MFKRSVIAMACIVALSACGGGGGGSPDVKSADTPSKPAAPVVAEKETEVKEDAPQAGSQGQDVPSKQGSQDMAAVSAENTGNGGSATTDKPKNEDEVAQNDMPQNAAGTDSSTPNHTPDPNMLAGNMENQATDAGESSQPANQPDMANAADGMQGDDPSAGGQNAGNTAAQGANQAENNQAAGSSDSTPASNPAPTNGGGDFGRTNVANGVLIDGPSQNITLTHCKGDSCSGNNFLDEEVQLKSEFEKLSDADKISNYKKDGKNDGKNDKFVGLFAYRVKKDGINKYIIFYTDNPPTRSARSRRLRRSLPAEMPLIPVNQADTLIVDGEAVSLTGHSGNIFAPEGNYRYLTYGAEKLSGGSYALRVQGEPAKGEMLAGTAVYNGEVLHFHMENGRPSPSRGRFAAKVDFGSKSVDGSIDSGDDLHMGTQKFKAVIDGNGFKGAWTENGSGDVSGKFYGPAGEEVAGKYSYRPTDAEKGGFGVFAGKKEQD
>NZ_JWNH01000005.1|WP_050890938.1|106590_106806_+|hypothetical-protein
MFKLGVYACLGLFAGWVLLLIVQLWFSFLEAELFFKITLTMARLFVIILAALLVCGQYFSEKKMKDDGFIN
>NZ_JWNH01000005.1|WP_127281551.1|104832_106176_+|argininosuccinate-synthase
MNQNHTILQNLPVGQKVGIAFSGGLDTSAALLWMKLKGALPYAYTANLGQPDEDDYNAIPKKAMEYGAENARLIDCRAQLAHEGIAAIQCGAFHVSTGGIAYFNTTPLGRAVTGTMLVSAMKEDDVNIWGDGSTYKGNDIERFYRYGLLTNPALKIYKPWLDQQFIDELGGRHEMSEFLIANGFNYKMSVEKAYSTDSNMLGATHEAKDLEFLNSGIKIVKPIMGVAFWDENVEVSPEEVNVRFEEGVPVTLNGKEYADPVELFLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALFHIAYERLVTGIHNEDTIEQYRINGLRLGRLLYQGRWFDSQALMLRETAQRWVAKAVTGEVTLELRRGNDYSILNTESPNLTYQPERLSMEKVEGAAFTPLDRIGQLTMRNLDITDTRAKLGIYSQSGLLALGEGSVLPQLGNKQ
>NZ_JWNH01000005.1|WP_079889669.1|123076_123919_+|DUF692-family-protein
MIQHAGLGYRRDLAEDFLSLSENSPICFIEAAPENWLKMGGWARKQFDRVAERLPLALHGLSMSLGGQAPLDTDLIDGIKEMMRRYDCTFFSDHLSYCHDGGHLYDLLPLPFTEEMVHHTARRIREVQDRLGCRIAVENTSYYLHSPLAEMNEVEFLNAVAREADCGIHLDVNNIYVNAVNHGLLSPEAFLKNVDAERVCYIHIAGHDVETPELLIDTHGAAVLPTVWDLLELAYAKLPTIPPTLLERDFNFPPFAELEAEVAKIAEYQTRAGKEYRRAA
>NZ_JWNH01000005.1|WP_079889625.1|123908_124655_+|DUF2063-domain-containing-protein
MQPETSAQYQHRFAQAIREGKTADGLPQERLNVYIRLIRNNIYSFIDRCYTETLQYFDSEEWSRLKEGFVRDAHAQTPYFQEIPGEFLQYCQSLPLSDGILALMDFEYTQLLAEVAQIPDIPDIHYSNDSKYTPSPAAFIRQYRYDVTDDLHEAETALLIWRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPEDDNWKNILLGKWSGWTEQRIIIPSLSAISENMEGNSPGQNHLSA
>NZ_JWNH01000005.1|WP_002215151.1|124676_125264_+|sigma-70-family-RNA-polymerase-sigma-factor
MPLPDLTDAELIESRKLLLHFARLQLPDHPDLAEDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKVFTTLDDELLDEAFESHFSQNGHWTPEGQPQHWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLRQCLQIKWFNQENPK
>NZ_JWNH01000005.1|WP_033908471.1|125236_125449_+|zf-HC2-domain-containing-protein
MVQPRKPEVNVMKKCRDIALLLSKHQDRETTPGEKISIYTHLLFCPYCREYKRQLQTIKRSLAKTTRTSK
>NZ_JWNH01000005.1|WP_003688111.1|125680_126121_+|hypothetical-protein
MIKETLMRPIFLSFVLLPILITACSTPDKSARWENIGTISNGNIHTYINKDSVRKNGNLMIFQDKKVVTNLKQERFANTPAYKTAIAEWEIHCNNKTYRLSSLQLFDTKNTEISTQNYTASSLRPMSILSGTLTEKQYETVCGKKL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_JWNH01000005_1	1.1\|21417\|29\|NZ_JWNH01000005\|CRISPRCasFinder	21417-21445	29	NZ_JWNH01000027.1	25517-25545	2	0.931
NZ_JWNH01000005_1	1.1\|21417\|29\|NZ_JWNH01000005\|CRISPRCasFinder	21417-21445	29	NZ_JWNH01000030.1	59-87	2	0.931
NZ_JWNH01000005_2	2.1\|27678\|44\|NZ_JWNH01000005\|CRISPRCasFinder	27678-27721	44	NZ_JWNH01000014.1	21893-21936	1	0.977
NZ_JWNH01000005_2	2.1\|27678\|44\|NZ_JWNH01000005\|CRISPRCasFinder	27678-27721	44	NZ_JWNH01000047.1	7905-7948	0	1.0
NZ_JWNH01000005_2	2.1\|27678\|44\|NZ_JWNH01000005\|CRISPRCasFinder	27678-27721	44	NZ_JWNH01000005.1	27298-27341	0	1.0
NZ_JWNH01000005_2	2.1\|27678\|44\|NZ_JWNH01000005\|CRISPRCasFinder	27678-27721	44	NZ_JWNH01000005.1	27601-27644	0	1.0
NZ_JWNH01000005_2	2.1\|27678\|44\|NZ_JWNH01000005\|CRISPRCasFinder	27678-27721	44	NZ_JWNH01000009.1	49646-49689	0	1.0
NZ_JWNH01000005_2	2.1\|27678\|44\|NZ_JWNH01000005\|CRISPRCasFinder	27678-27721	44	NZ_JWNH01000009.1	49898-49941	0	1.0
NZ_JWNH01000005_2	2.1\|27678\|44\|NZ_JWNH01000005\|CRISPRCasFinder	27678-27721	44	NZ_JWNH01000009.1	50150-50193	1	0.977
NZ_JWNH01000005_2	2.1\|27678\|44\|NZ_JWNH01000005\|CRISPRCasFinder	27678-27721	44	NZ_JWNH01000009.1	43549-43592	2	0.955
NZ_JWNH01000005_3	3.1\|28162\|44\|NZ_JWNH01000005\|CRISPRCasFinder	28162-28205	44	NZ_JWNH01000001.1	67308-67351	0	1.0
NZ_JWNH01000005_3	3.1\|28162\|44\|NZ_JWNH01000005\|CRISPRCasFinder	28162-28205	44	NZ_JWNH01000001.1	67590-67633	1	0.977
NZ_JWNH01000005_3	3.1\|28162\|44\|NZ_JWNH01000005\|CRISPRCasFinder	28162-28205	44	NZ_JWNH01000021.1	25429-25472	1	0.977

1. spacer 1.1|21417|29|NZ_JWNH01000005|CRISPRCasFinder matches to position: 25517-25545, mismatch: 2, identity: 0.931

tagaacgcggggttaagaaaacctgcatc	CRISPR spacer
taggacgcagggttaagaaaacctgcatc	Protospacer
***.****.********************

2. spacer 1.1|21417|29|NZ_JWNH01000005|CRISPRCasFinder matches to position: 59-87, mismatch: 2, identity: 0.931

tagaacgcggggttaagaaaacctgcatc	CRISPR spacer
taggacgcagggttaagaaaacctgcatc	Protospacer
***.****.********************

3. spacer 2.1|27678|44|NZ_JWNH01000005|CRISPRCasFinder matches to position: 21893-21936, mismatch: 1, identity: 0.977

agttcgttcggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
agttcgttcggtttcgcttgttttaaatttcgggtaacttccac	Protospacer
**************************.*****************

4. spacer 2.1|27678|44|NZ_JWNH01000005|CRISPRCasFinder matches to position: 7905-7948, mismatch: 0, identity: 1.0

agttcgttcggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
agttcgttcggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
********************************************

5. spacer 2.1|27678|44|NZ_JWNH01000005|CRISPRCasFinder matches to position: 27298-27341, mismatch: 0, identity: 1.0

agttcgttcggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
agttcgttcggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
********************************************

6. spacer 2.1|27678|44|NZ_JWNH01000005|CRISPRCasFinder matches to position: 27601-27644, mismatch: 0, identity: 1.0

agttcgttcggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
agttcgttcggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
********************************************

7. spacer 2.1|27678|44|NZ_JWNH01000005|CRISPRCasFinder matches to position: 49646-49689, mismatch: 0, identity: 1.0

agttcgttcggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
agttcgttcggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
********************************************

8. spacer 2.1|27678|44|NZ_JWNH01000005|CRISPRCasFinder matches to position: 49898-49941, mismatch: 0, identity: 1.0

agttcgttcggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
agttcgttcggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
********************************************

9. spacer 2.1|27678|44|NZ_JWNH01000005|CRISPRCasFinder matches to position: 50150-50193, mismatch: 1, identity: 0.977

agttcgttcggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
agttcgttcggtttcgcttgttttaagtttcgggtaacttctac	Protospacer
*****************************************.**

10. spacer 2.1|27678|44|NZ_JWNH01000005|CRISPRCasFinder matches to position: 43549-43592, mismatch: 2, identity: 0.955

agttcgttcggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
agttcgttcggtttcgcttgttttaaatttcgggtaacttctac	Protospacer
**************************.**************.**

11. spacer 3.1|28162|44|NZ_JWNH01000005|CRISPRCasFinder matches to position: 67308-67351, mismatch: 0, identity: 1.0

ggttcgttcggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
ggttcgttcggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
********************************************

12. spacer 3.1|28162|44|NZ_JWNH01000005|CRISPRCasFinder matches to position: 67590-67633, mismatch: 1, identity: 0.977

ggttcgttcggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
ggctcgttcggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
**.*****************************************

13. spacer 3.1|28162|44|NZ_JWNH01000005|CRISPRCasFinder matches to position: 25429-25472, mismatch: 1, identity: 0.977

ggttcgttcggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
ggttcgttcggtttcacttgttttaagtttcgggtaacttccac	Protospacer
***************.****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

15. NZ_JWNH01000030

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

16. NZ_JWNH01000041

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1101 : 7319

Burkholderia_virus(33.33%)

integrase

attL 607:619|attR 13162:13174

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
607:619	attL	NA	NA	NA	NA
WP_025464002.1\|1101_1719_-\|integrase	site-specific integrase	A0A2H4J5F8	uncultured_Caudovirales_phage	6.7e-13	34.8
WP_002222577.1\|2030_2906_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	3.0e-43	39.4
WP_002232332.1\|2950_3241_-	hypothetical protein	NA	NA	NA	NA
WP_002222576.1\|3252_3498_-	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	3.8e-12	55.0
WP_002219357.1\|3490_3715_-	DNA-binding protein	NA	NA	NA	NA
WP_002222575.1\|3986_4358_+	helix-turn-helix transcriptional regulator	A4JWN8	Burkholderia_virus	5.6e-07	38.6
WP_002222574.1\|4359_4983_+	hypothetical protein	NA	NA	NA	NA
WP_002233797.1\|4975_5170_+	helix-turn-helix transcriptional regulator	A0A0U4JEE2	Pseudomonas_phage	4.7e-05	40.4
WP_127231934.1\|5193_5754_+	hypothetical protein	NA	NA	NA	NA
WP_002225287.1\|5784_6732_+	hypothetical protein	NA	NA	NA	NA
WP_127214520.1\|6815_7319_+	glycoside hydrolase family 108 protein	A0A0M3LSH2	Mannheimia_phage	7.0e-53	62.0
13162:13174	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

17. NZ_JWNH01000021

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CRISPR-Cas detection and classification

Crispr_ID: NZ_JWNH01000021_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_JWNH01000021_1

1428-1614

Orphan

I-E

Consensus_repeat	Method
GGTCTGGATTCCCGCCTGCGCGGGAATGACGGCATCGGTCTGCCGTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_JWNH01000021_1

>merge|NZ_JWNH01000021|1|1428-1614|PILER-CR
GGTCTAGATTCCCGCCTGCGCGGGAATGACGGCATCGGTCTGCCGTTACAACACGGTTTCTTTAGATTTTACGTTCTGGATTCCCGCCTGCGCGGGAATGACGGGTCTTTTATAAACTTTGAATATTGCTGTTATCCCAAGGTCTGGATTCCCGCCTGCGCGGGAATGACGGCATCGGTCTGCTGTT

>NZ_JWNH01000021|1|1|1428-1614|PILER-CR
GGTCTAGATTCCCGCCTGCGCGGGAATGACGGCATCGGTCTGCCGTT	ACAACACGGTTTCTTTAGATTTTAC
GTTCTGGATTCCCGCCTGCGCGGGAATGACGGGTCTTTTATAAACTT	TGAATATTGCTGTTATCCCAAGGTCTGGATTCCCGC
CTGCGCGGGAATGACGGCATCGGTCTGCTGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_JWNH01000021.1\|WP_002228837.1\|1632_2898_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_JWNH01000021.1\|WP_002240924.1\|7227_7941_+\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|273917
NZ_JWNH01000021.1\|WP_002220087.1\|6167_7169_-\|thiamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|130321
NZ_JWNH01000021.1\|WP_002233306.1\|7933_8206_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369706
NZ_JWNH01000021.1\|WP_127281739.1\|8260_9637_+\|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273482
NZ_JWNH01000021.1\|WP_127232952.1\|10112_11390_-\|deferrochelatase/peroxidase-EfeB	unknown	unknown	gnl\|CDD\|273606
NZ_JWNH01000021.1\|WP_002216166.1\|807_1092_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198395
NZ_JWNH01000021.1\|WP_002216163.1\|3043_4612_+\|bifunctional-peptide-methionine-(S)-S-oxide-reductase-MsrA/peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|184456
NZ_JWNH01000021.1\|WP_002239240.1\|9711_10041_+\|alkylphosphonate-utilization-protein	unknown	unknown	gnl\|CDD\|225380
NZ_JWNH01000021.1\|WP_002215245.1\|4713_5199_-\|CinA-family-protein	unknown	unknown	gnl\|CDD\|334938
NZ_JWNH01000021.1\|WP_002215243.1\|5225_6074_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740

Protein	Function_ID	Function_description	E-value
NZ_JWNH01000021.1\|WP_002228837.1\|1632_2898_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	1.73062e-175
NZ_JWNH01000021.1\|WP_002240924.1\|7227_7941_+\|pyrimidine-5'-nucleotidase	gnl\|CDD\|273917	TIGR01993, Suppressor_of_disruption_of_TFIIS, pyrimidine 5'-nucleotidase. This family of proteins includes the SDT1/SSM1 gene from yeast which has been shown to code for a pyrimidine (UMP/CMP) 5'nucleotidase. The family spans plants, fungi and a small number of bacteria. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).	9.41655e-86
NZ_JWNH01000021.1\|WP_002220087.1\|6167_7169_-\|thiamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|130321	TIGR01254, Thiamine-binding_periplasmic_protein, ABC transporter periplasmic binding protein, thiB subfamily. The model describes thiamine ABC transporter, periplasmic protein in bacteria and archae. The protein belongs to the larger ABC transport system. It consists of at least three components: the thiamine binding periplasmic protein; an inner membrane permease; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other].	1.72035e-150
NZ_JWNH01000021.1\|WP_002233306.1\|7933_8206_+\|hypothetical-protein	gnl\|CDD\|369706	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	0.00100205
NZ_JWNH01000021.1\|WP_127281739.1\|8260_9637_+\|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase	gnl\|CDD\|273482	TIGR01173, Bifunctional_glmU_protein_., UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars].	0
NZ_JWNH01000021.1\|WP_127232952.1\|10112_11390_-\|deferrochelatase/peroxidase-EfeB	gnl\|CDD\|273606	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme. This model represents a small family of proteins with a typical Tat (twin-arginine translocation) signal sequence, suggesting that the family is exported in a folded state, perhaps with a bound redox cofactor. Members of this family show homology to Dyp, a dye-decolorizing peroxidase from Geotrichum candidum that lacks any typical heme-binding site.	0
NZ_JWNH01000021.1\|WP_002216166.1\|807_1092_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198395	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria. The family includes a group of uncharacterized bacterial proteins with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC.	9.46959e-53
NZ_JWNH01000021.1\|WP_002216163.1\|3043_4612_+\|bifunctional-peptide-methionine-(S)-S-oxide-reductase-MsrA/peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	0
NZ_JWNH01000021.1\|WP_002239240.1\|9711_10041_+\|alkylphosphonate-utilization-protein	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	5.09245e-63
NZ_JWNH01000021.1\|WP_002215245.1\|4713_5199_-\|CinA-family-protein	gnl\|CDD\|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	5.3821e-69
NZ_JWNH01000021.1\|WP_002215243.1\|5225_6074_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	3.47239e-50

>NZ_JWNH01000021.1|WP_002216166.1|807_1092_-|GIY-YIG-nuclease-family-protein
MQPAVYILASQRNGTLYIGVTSDLVQRIYQHREHLIEGFTSRYNVTMLVWYELHPTMESAITREKQLKKWNRAWKLQLIEENNVSWQDLWFDII
>NZ_JWNH01000021.1|WP_002228837.1|1632_2898_-|signal-recognition-particle-docking-protein-FtsY
MFSFFRRKKKQETPAPEEAQVQETAAKAESEVTQIVENIKEEVESLTESVKGQVESAVETVSGAVEQVKETVAEMLSEAEEAAEKAAEQVEAAKEAVAETVGEAVGQVQEAVATTEEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVDALLD
>NZ_JWNH01000021.1|WP_002216163.1|3043_4612_+|bifunctional-peptide-methionine-(S)-S-oxide-reductase-MsrA/peptide-methionine-(R)-S-oxide-reductase-MsrB
MKHRTFFSLCAKFGCLLALGACSPKIVDAGAATVPHTLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPNADLGSLKHSFYKPDTQKKDSKIMNTRTIYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPLKNFYDAEEYHQDYLIKNPNGYCHIDIRKADEPLPGKTKTAPQGKGFDAATYKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPLEQMDAAGYGALKSKVK
>NZ_JWNH01000021.1|WP_002215245.1|4713_5199_-|CinA-family-protein
MDALHTIARNLTKKRQTVSCAESCTGGMLAAAFTSVAGSSQWFDQSFVTYSNKAKEDRLGVLPETLLEHGAVSRQTVYEMARGAKAVAQADYAVGISGIAGPGGGSESKPVGTVWFGFAFPGGSCEAMRRFDGNRESVRAQAVAFALERLAGLIENGGDAV
>NZ_JWNH01000021.1|WP_002215243.1|5225_6074_-|mechanosensitive-ion-channel-family-protein
MDFKQFDFLHLISVSGWEHLAEKAWAFGLNLAAALLIFLVGKWAAKRIVAVMRAAMTRAQVDATLISFLCNVANIGLLILVIIAALGRLGVSTTSVTALIGGAGLAVALSLKDQLSNFAAGALIILFRPFKVGDFIRVGGFEGYVREIKMVQTSLRTTDNEEVVLPNSVVMGNSIVNRSTLPLCRAQVIVGVDYNCDLKVAKEAVLKAAVEHPLSVQNEERQAAAYITALGDNAIEITLWAWANEADRWTLQCDLNEQVVENLRKVNINIPFPQRDIHIINS
>NZ_JWNH01000021.1|WP_002220087.1|6167_7169_-|thiamine-ABC-transporter-substrate-binding-protein
MKRKIWLLPLLAVSAYLQAQTEVRLAVHKSFSLPKGLIARFERANDAKVSIIQAGGANEMLNKLILSRANPIADAVYGLDNANIGKAREMGILAAAQPESAPVAVGLPSALAVDYGYVSINYDKKWFEGKKLPLPQTLQDLTRPEYKNLLVVPSPATSSPGLGFLMANISGLGEEGAFKWWAQMRQNGVKVAKGWSEAYYTDFSHNGGAYPLVVGYAASPAAEVYFSKGKYSEPPTGNLFLKGGVFRQVEGAAVLKGAKQPKLAAKLVQWLQSREVQQAVPSEMWVYPAVKNTRLPDVFRFAQAPTHTTAPAQRDIDANQRGWVSRWIRTVLK
>NZ_JWNH01000021.1|WP_002240924.1|7227_7941_+|pyrimidine-5'-nucleotidase
MQENPTVWLFDLDNTLHNADAGIFTLINRAMTRYMARRLKLSESAASDLRQDYWHRYGATLAGLQIHHPEIDIAEFLRESHPIDEVLTRLHGMPKTQNTLSRLKGRKAVFSNGPSFYVRAIVGALGLENRFDALFGTDDFGLLYKPNPQAYLNVCRLLDVPPECCIMVDDSADNLHQAKALGMKTVRFGAKVHDLPFIDASVSDMAQLAQYAETLSEHRQNHYNTRTTPENTKECYA
>NZ_JWNH01000021.1|WP_002233306.1|7933_8206_+|hypothetical-protein
MRKTFLILMTAAALLSGCAWETYQDGNGKTAVRQKYPAGTPVYYQDGSYSKNMNYNQYRPERHAVLPDQTDGSEQGVRGQNWQKPKFQNR
>NZ_JWNH01000021.1|WP_127281739.1|8260_9637_+|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase
MPQNTLNIVILAAGKGTRMYSKMPKVLHRIGGKPMVGRVIDTAAALNPQNICVVIGHGKEQVLNTVKRDVVWVEQTEQLGTGHAVKTALPHLSAEGRTLVLYGDVPLIDAATLETLLEAAGDEVGLLTDVPHDPTGLGRIIRDSDSNGSVTAIVEEKDANVTQKAVKEINTGILVLPNAKLEAWLNSLSSNNAQGEYYLTDLIAKAVADGIKVHPVQVRASHLAAGVNNKLQLAELERIFQTEQAQELLKAGVTLRDPARFDSRGRLKHGQDVVIDVNCIFEGEVEIGDNVEIGANCVIKNAKIGANSKIAPFSHLEDCEVGQNNQIGPYARLRPQARLSDDVHVGNFVEIKNAAIGKGTKANHLTYIGDAEVGSKTNFGAGTIIANYDGVNKHKTVIGDEVRIGSNCVLVAPVTLGNKVTTGAGSAITRNCEDGKLVLARSRQTVIEGWVRPEKDKR
>NZ_JWNH01000021.1|WP_002239240.1|9711_10041_+|alkylphosphonate-utilization-protein
MSLPPCPQCASEYTYEDGGQYICPECAHEWNETESAADLAAQVRDANGAALQNGDTVILIKDLKVKGSSMVIKQGTKVKGIRLQEGDHNIGCKIDGSAMNLKSEFVKKA
>NZ_JWNH01000021.1|WP_127232952.1|10112_11390_-|deferrochelatase/peroxidase-EfeB
MSKNQPAQPTRRTLFKTAIAAGAVGAIGGYLGGKKQGETAERTAERTAESQHSPQAYPCYGEHQAGIVTPQQAFSIMCAFDVTAQSAKQLENLFRTLTARIEFLTQGGEYQDGDDKLPPAGSGILGKAFNPDGLTVTVGVGSSLFDGRFGLKDKKPVHLQEMRDFSNDKLQKSWCDGDLSLQICAFTPETCQAALRDIIKHTAQTAVIRWSIDGWQPKSEPGAMAARNLLGFRDGTGNPKVSDPKTADEVLWTGVAANSLDEPEWAKNGSYQAVRLIRHFVEFWDRTPLQEQTDIFGRRKYSGAPMDGKKEADQPDFAKDPEGNTTPKDSHMRLANPRDPEFLKKHRLFRRAYSYSRGLASSGQLDVGLVFICYQANLADGFIFVQNLLNGEPLEEYISPFGGGYFFVLPGVEKGGFLGQGLLGV

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_JWNH01000021_1	1.2\|1547\|36\|NZ_JWNH01000021\|PILER-CR	1547-1582	36	NZ_JWNH01000002.1	82818-82853	1	0.972
NZ_JWNH01000021_1	1.2\|1547\|36\|NZ_JWNH01000021\|PILER-CR	1547-1582	36	NZ_JWNH01000002.1	82594-82629	2	0.944
NZ_JWNH01000021_1	1.2\|1547\|36\|NZ_JWNH01000021\|PILER-CR	1547-1582	36	NZ_JWNH01000021.1	255-290	1	0.972

1. spacer 1.2|1547|36|NZ_JWNH01000021|PILER-CR matches to position: 82818-82853, mismatch: 1, identity: 0.972

gtcttttataaactttgaatattgctgttatcccaa	CRISPR spacer
gtcttttataacctttgaatattgctgttatcccaa	Protospacer
*********** ************************

2. spacer 1.2|1547|36|NZ_JWNH01000021|PILER-CR matches to position: 82594-82629, mismatch: 2, identity: 0.944

gtcttttataaactttgaatattgctgttatcccaa	CRISPR spacer
gtcttttataacctttgaatattgccgttatcccaa	Protospacer
*********** *************.**********

3. spacer 1.2|1547|36|NZ_JWNH01000021|PILER-CR matches to position: 255-290, mismatch: 1, identity: 0.972

gtcttttataaactttgaatattgctgttatcccaa	CRISPR spacer
gtcttttataacctttgaatattgctgttatcccaa	Protospacer
*********** ************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

18. NZ_JWNH01000024

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6364 : 29095

Haemophilus_phage(45.0%)

head,capsid,terminase,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213583.1\|6364_6661_-	hypothetical protein	A0A0M3LNN9	Mannheimia_phage	1.4e-24	61.4
WP_002213584.1\|6639_7245_-	hypothetical protein	Q7Y5S1	Haemophilus_phage	2.7e-14	42.3
WP_002213585.1\|7324_7612_+	hypothetical protein	NA	NA	NA	NA
WP_002213586.1\|7583_7886_+	BrnA antitoxin family protein	NA	NA	NA	NA
WP_101115816.1\|8387_10361_-\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	8.1e-129	57.3
WP_127281767.1\|10371_10932_-	YmfQ family protein	F6MIL7	Haemophilus_phage	6.7e-28	37.8
WP_127281768.1\|10928_11447_-\|plate	baseplate J/gp47 family protein	F6MIL6	Haemophilus_phage	1.1e-45	55.1
WP_127218467.1\|11397_11631_-	hypothetical protein	A0A0M3LPA3	Mannheimia_phage	1.8e-11	55.4
WP_127281769.1\|11627_12773_-\|tail	phage tail protein	F6MIL3	Haemophilus_phage	6.6e-115	57.6
WP_127281770.1\|12762_14094_-	phage morphogenesis protein	A0A0M3LQ21	Mannheimia_phage	7.6e-62	34.6
WP_127281771.1\|14093_16292_-	PRTRC system protein F	A0A0M3LPB6	Mannheimia_phage	8.2e-37	32.5
WP_101106671.1\|16378_16840_-	hypothetical protein	NA	NA	NA	NA
WP_101120572.1\|17052_17478_-	hypothetical protein	NA	NA	NA	NA
WP_101120571.1\|17484_17862_-\|tail	phage tail protein	A0A0M3LRV6	Mannheimia_phage	3.7e-30	53.3
WP_164732532.1\|17926_19339_-\|tail	phage tail protein	B7SDP8	Haemophilus_phage	1.3e-125	53.8
WP_002225238.1\|19338_19536_-	DUF2635 domain-containing protein	A0A0M3LQM9	Mannheimia_phage	5.4e-09	55.4
WP_101106677.1\|19532_20183_-	DUF1834 family protein	A0A0M3LQJ7	Mannheimia_phage	3.6e-33	40.6
WP_127281772.1\|20172_20595_-	DUF1320 family protein	NA	NA	NA	NA
WP_118833139.1\|20594_21005_-	hypothetical protein	NA	NA	NA	NA
WP_118833138.1\|21070_21979_-\|head	head protein	B7SDP1	Haemophilus_phage	5.3e-99	57.7
WP_127281773.1\|21978_23040_-	hypothetical protein	A0A2D1GNS3	Pseudomonas_phage	1.3e-59	43.0
WP_002213608.1\|23270_23687_-	phage virion morphogenesis protein	B7SDN8	Haemophilus_phage	2.4e-30	48.2
WP_127281774.1\|23796_25092_-\|capsid	minor capsid protein	B7SDN5	Haemophilus_phage	1.1e-113	50.1
WP_127281775.1\|25078_26647_-	DUF935 domain-containing protein	A0A0M3LRU4	Mannheimia_phage	5.6e-189	62.9
WP_164732533.1\|26646_28269_-\|terminase	phage terminase large subunit	B7SDN0	Haemophilus_phage	3.2e-224	69.7
WP_025462657.1\|28273_29095_-	DNA (cytosine-5-)-methyltransferase	A0A1P8DJM9	Virus_Rctr41k	1.8e-45	55.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

19. NZ_JWNH01000027

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

20. NZ_JWNH01000001

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

197066 : 205365

Synechococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002241371.1\|197066_198038_+	ADP-heptose synthase	M4QF80	Synechococcus_phage	6.6e-15	29.6
WP_002219492.1\|198074_199310_+	DNA (cytosine-5-)-methyltransferase	A0A1B1INZ4	uncultured_Mediterranean_phage	2.2e-47	32.0
WP_002225406.1\|199311_200343_+	HNH endonuclease	NA	NA	NA	NA
WP_127213682.1\|200471_201476_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	1.1e-25	31.6
WP_002225404.1\|201549_203094_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	7.3e-101	41.7
WP_118786939.1\|203210_204062_+	DNA damage-inducible protein D	A0A1W6JPJ7	Morganella_phage	3.4e-76	65.5
WP_127281385.1\|204228_205365_+	restriction endonuclease subunit S	F2Y1N5	Organic_Lake_phycodnavirus	1.7e-14	27.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage