CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Prophage number	Anti-CRISPR protein number
NZ_FFCX01000051	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000066	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000003	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	2	0
NZ_FFCX01000078	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000014	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000042	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000016	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	1 crisprs	NA	1	0	0
NZ_FFCX01000062	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000083	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000090	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000082	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000047	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000007	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	1 crisprs	NA	0	0	0
NZ_FFCX01000085	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000002	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000030	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000053	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000070	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000087	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000005	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	2
NZ_FFCX01000004	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000001	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_FFCX01000071	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000074	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000093	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	1 crisprs	NA	1	0	0
NZ_FFCX01000013	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000058	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000067	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000072	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000023	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000080	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000032	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	c2c4_V-U1	0	0	0
NZ_FFCX01000084	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000089	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000029	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000061	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000045	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000054	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000006	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	2 crisprs	NA	1	0	0
NZ_FFCX01000069	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000052	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000076	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000020	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	1 crisprs	NA	1	0	0
NZ_FFCX01000055	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000088	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000031	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000012	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000035	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000033	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000044	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000022	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	1	0
NZ_FFCX01000034	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	3 crisprs	NA	2	0	0
NZ_FFCX01000039	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000010	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000026	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000079	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000028	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	2 crisprs	NA	3	0	0
NZ_FFCX01000092	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000037	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	1 crisprs	NA	2	0	0
NZ_FFCX01000059	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000073	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000017	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	1 crisprs	NA	1	0	0
NZ_FFCX01000075	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000011	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000021	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000041	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	cas3	0	0	0
NZ_FFCX01000068	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000049	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000046	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000008	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	1 crisprs	NA	1	0	0
NZ_FFCX01000086	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000040	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	DEDDh	0	0	0
NZ_FFCX01000038	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000060	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000036	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	DinG	0	0	0
NZ_FFCX01000065	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000024	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000077	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000015	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	1 crisprs	DEDDh	0	0	0
NZ_FFCX01000056	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000048	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000050	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000064	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000019	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000018	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000057	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000091	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000043	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000025	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000081	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	1 crisprs	NA	0	0	0
NZ_FFCX01000063	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000009	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	NA	0	0	0
NZ_FFCX01000027	Neisseria meningitidis strain 2842STDY5881462, whole genome shotgun sequence	0 crisprs	csa3	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_FFCX01000093_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_FFCX01000093_1

64-156

Orphan

I-E

Consensus_repeat	Method
GATTCCCGCCTGCGCGGGAATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_FFCX01000093_1

>merge|NZ_FFCX01000093|1|64-156|CRISPRCasFinder
GATTCCCGCCTGCGCGGGAATGACGGGTCTTTTATAACCTTTGAATATTGCTGTTATCCCAAGGTCTGGATTCCCGCCTACGCGGGAATGACG

>NZ_FFCX01000093|1|1|64-156|CRISPRCasFinder
GATTCCCGCCTGCGCGGGAATGACG	GGTCTTTTATAACCTTTGAATATTGCTGTTATCCCAAGGTCTG
GATTCCCGCCTACGCGGGAATGACG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_FFCX01000093_1	1.1\|89\|43\|NZ_FFCX01000093\|CRISPRCasFinder	89-131	43	NZ_FFCX01000008.1	1034-1076	0	1.0
NZ_FFCX01000093_1	1.1\|89\|43\|NZ_FFCX01000093\|CRISPRCasFinder	89-131	43	NZ_FFCX01000024.1	12135-12177	2	0.953

1. spacer 1.1|89|43|NZ_FFCX01000093|CRISPRCasFinder matches to position: 1034-1076, mismatch: 0, identity: 1.0

ggtcttttataacctttgaatattgctgttatcccaaggtctg	CRISPR spacer
ggtcttttataacctttgaatattgctgttatcccaaggtctg	Protospacer
*******************************************

2. spacer 1.1|89|43|NZ_FFCX01000093|CRISPRCasFinder matches to position: 12135-12177, mismatch: 2, identity: 0.953

ggtcttttataacctttgaatattgctgttatcccaaggtctg	CRISPR spacer
ggtcttttataacctttgaatattgccgctatcccaaggtctg	Protospacer
**************************.*.**************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

18035 : 24212

Burkholderia_virus(33.33%)

integrase

attL 15367:15385|attR 27540:27558

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
15367:15385	attL	NA	NA	NA	NA
WP_021437662.1\|18035_18608_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4J5F8	uncultured_Caudovirales_phage	9.0e-12	34.1
WP_002221070.1\|18919_19795_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	2.1e-44	39.9
WP_002213688.1\|19839_20136_-	hypothetical protein	NA	NA	NA	NA
WP_002222576.1\|20141_20387_-	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	3.8e-12	55.0
WP_002225289.1\|20379_20604_-	DNA-binding protein	NA	NA	NA	NA
WP_002222575.1\|20875_21247_+	helix-turn-helix transcriptional regulator	A4JWN8	Burkholderia_virus	5.6e-07	38.6
WP_002222574.1\|21248_21872_+	hypothetical protein	NA	NA	NA	NA
WP_002233797.1\|21864_22059_+	helix-turn-helix transcriptional regulator	A0A0U4JEE2	Pseudomonas_phage	4.7e-05	40.4
WP_002225288.1\|22082_22646_+	hypothetical protein	NA	NA	NA	NA
WP_002225287.1\|22676_23624_+	hypothetical protein	NA	NA	NA	NA
WP_002225286.1\|23708_24212_+	glycoside hydrolase family 108 protein	A0A0M3LSH2	Mannheimia_phage	6.0e-52	60.7
27540:27558	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_FFCX01000034

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CRISPR-Cas detection and classification

Crispr_ID: NZ_FFCX01000034_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_FFCX01000034_1

223-322

Orphan

I-E

Consensus_repeat	Method
GATTCCCGCCTGCGCGGGAATGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_FFCX01000034_1

>merge|NZ_FFCX01000034|1|223-322|CRISPRCasFinder
GATTCCCGCCTGCGCGGGAATGACGGTTTAGAAGTTGCCCGAAACCTCAAAAAAACCGAAACCGAACAAGCCGGATTCCCGCCTGCGCGGGAATGACGGC

>NZ_FFCX01000034|1|1|223-322|CRISPRCasFinder
GATTCCCGCCTGCGCGGGAATGACGG	TTTAGAAGTTGCCCGAAACCTCAAAAAAACCGAAACCGAACAAGCCG
GATTCCCGCCTGCGCGGGAATGACGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_FFCX01000034.1\|WP_002243925.1\|7855_8128_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369706
NZ_FFCX01000034.1\|WP_002215245.1\|4636_5122_-\|CinA-family-protein	unknown	unknown	gnl\|CDD\|334938
NZ_FFCX01000034.1\|WP_002216166.1\|643_928_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198395
NZ_FFCX01000034.1\|WP_002243926.1\|7149_7863_+\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|273917
NZ_FFCX01000034.1\|WP_002221795.1\|2966_4535_+\|bifunctional-peptide-methionine-(S)-S-oxide-reductase-MsrA/peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|184456
NZ_FFCX01000034.1\|WP_002243928.1\|1555_2821_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_FFCX01000034.1\|WP_002215243.1\|5147_5996_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_FFCX01000034.1\|WP_002243927.1\|6089_7091_-\|thiamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|130321
NZ_FFCX01000034.1\|WP_002225768.1\|9627_9957_+\|alkylphosphonate-utilization-protein	unknown	unknown	gnl\|CDD\|225380
NZ_FFCX01000034.1\|WP_002225769.1\|8182_9553_+\|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273482

Protein	Function_ID	Function_description	E-value
NZ_FFCX01000034.1\|WP_002243925.1\|7855_8128_+\|hypothetical-protein	gnl\|CDD\|369706	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	0.000166952
NZ_FFCX01000034.1\|WP_002215245.1\|4636_5122_-\|CinA-family-protein	gnl\|CDD\|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	5.3821e-69
NZ_FFCX01000034.1\|WP_002216166.1\|643_928_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198395	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria. The family includes a group of uncharacterized bacterial proteins with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC.	9.46959e-53
NZ_FFCX01000034.1\|WP_002243926.1\|7149_7863_+\|pyrimidine-5'-nucleotidase	gnl\|CDD\|273917	TIGR01993, Suppressor_of_disruption_of_TFIIS, pyrimidine 5'-nucleotidase. This family of proteins includes the SDT1/SSM1 gene from yeast which has been shown to code for a pyrimidine (UMP/CMP) 5'nucleotidase. The family spans plants, fungi and a small number of bacteria. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).	1.21507e-87
NZ_FFCX01000034.1\|WP_002221795.1\|2966_4535_+\|bifunctional-peptide-methionine-(S)-S-oxide-reductase-MsrA/peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	0
NZ_FFCX01000034.1\|WP_002243928.1\|1555_2821_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	6.63714e-175
NZ_FFCX01000034.1\|WP_002215243.1\|5147_5996_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	3.47239e-50
NZ_FFCX01000034.1\|WP_002243927.1\|6089_7091_-\|thiamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|130321	TIGR01254, Thiamine-binding_periplasmic_protein, ABC transporter periplasmic binding protein, thiB subfamily. The model describes thiamine ABC transporter, periplasmic protein in bacteria and archae. The protein belongs to the larger ABC transport system. It consists of at least three components: the thiamine binding periplasmic protein; an inner membrane permease; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other].	3.46057e-151
NZ_FFCX01000034.1\|WP_002225768.1\|9627_9957_+\|alkylphosphonate-utilization-protein	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	2.00117e-63
NZ_FFCX01000034.1\|WP_002225769.1\|8182_9553_+\|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase	gnl\|CDD\|273482	TIGR01173, Bifunctional_glmU_protein_., UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars].	0

>NZ_FFCX01000034.1|WP_002216166.1|643_928_-|GIY-YIG-nuclease-family-protein
MQPAVYILASQRNGTLYIGVTSDLVQRIYQHREHLIEGFTSRYNVTMLVWYELHPTMESAITREKQLKKWNRAWKLQLIEENNVSWQDLWFDII
>NZ_FFCX01000034.1|WP_002243928.1|1555_2821_-|signal-recognition-particle-docking-protein-FtsY
MFSFFRRKKKQETPALEEAQIQETAAKAESELAQIVENIKEDAESLAESVKGQVESAVETVSGAVEQVKETVAEMLSEAEEAAEKAAEQVEAAKEAVAETVGEAVGQVQEAVATTEEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVDALLD
>NZ_FFCX01000034.1|WP_002221795.1|2966_4535_+|bifunctional-peptide-methionine-(S)-S-oxide-reductase-MsrA/peptide-methionine-(R)-S-oxide-reductase-MsrB
MKHRTFFSLCAKFGCLLALGACSPKIVDAGAATVPHTLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPNADLGSLKHSFYKPDTQKKDSKIMNTRTIYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPLKNFYDAEEYHQDYLIKNPNGYCHIDIRKADEPLPGKTKTAPQGKGFDAATYKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPLEQMDAAGYGALKGKVK
>NZ_FFCX01000034.1|WP_002215245.1|4636_5122_-|CinA-family-protein
MDALHTIARNLTKKRQTVSCAESCTGGMLAAAFTSVAGSSQWFDQSFVTYSNKAKEDRLGVLPETLLEHGAVSRQTVYEMARGAKAVAQADYAVGISGIAGPGGGSESKPVGTVWFGFAFPGGSCEAMRRFDGNRESVRAQAVAFALERLAGLIENGGDAV
>NZ_FFCX01000034.1|WP_002215243.1|5147_5996_-|mechanosensitive-ion-channel-family-protein
MDFKQFDFLHLISVSGWEHLAEKAWAFGLNLAAALLIFLVGKWAAKRIVAVMRAAMTRAQVDATLISFLCNVANIGLLILVIIAALGRLGVSTTSVTALIGGAGLAVALSLKDQLSNFAAGALIILFRPFKVGDFIRVGGFEGYVREIKMVQTSLRTTDNEEVVLPNSVVMGNSIVNRSTLPLCRAQVIVGVDYNCDLKVAKEAVLKAAVEHPLSVQNEERQAAAYITALGDNAIEITLWAWANEADRWTLQCDLNEQVVENLRKVNINIPFPQRDIHIINS
>NZ_FFCX01000034.1|WP_002243927.1|6089_7091_-|thiamine-ABC-transporter-substrate-binding-protein
MKRKIWLLPLLAVSAYLQAQTEVRLAVHKSFSLPKGLIARFERANDAKVSIIQAGGANEMLNKLILSRANPIADAVYGLDNANIGKAREMGILAAAQPESAPVAVGLPSALAVDYGYVSINYDKKWFEGKKLPLPQTLQDLTRPEYKNLLVVPSPATSSPGLGFLMANISGLGEESAFKWWAQMRQNGVKVAKGWSEAYYTDFSHNGGAYPLVVGYAASPAAEVYFSKGKYSEPPTGNLFLKGGVFRQVEGAAVLKGAKQPELAAKLVQWLQSREVQQAVPSEMWVYPAVKNTRLPDVFRFAQAPTHTTAPAQRDIDANQRGWVSRWIRTVLK
>NZ_FFCX01000034.1|WP_002243926.1|7149_7863_+|pyrimidine-5'-nucleotidase
MQENPTVWLFDLDNTLHDADAGIFTLINRAMTRYMARRLKLSESAASDLRQDYWHRYGATLAGLQIHHPEIDIAEFLRESHPIDAILTRLHGMPETQNTLSRLKGRKAVFSNGPSFYVRAVVNALGLENRFDALFGTDDFGLLYKPNPQAYLNVCRLLDVPPECCIMVDDSADNLHQAKALGMKTVRFGAKSHALPFIDASVSDMAQLARYAETLSEHRQNHYNTPYPPKIRKKSHA
>NZ_FFCX01000034.1|WP_002243925.1|7855_8128_+|hypothetical-protein
MRKTFLFLTAAAALLSGCAWETYQDGNGKTAVRQKYPAGTPVYYQDGSYSKNMNYNQYRPERHAVLPNQTGNNADEEHRQHWQKPKFQNR
>NZ_FFCX01000034.1|WP_002225769.1|8182_9553_+|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase
MPQNTLNIVILAAGKGTRMYSKMPKVLHRIGGKPMVGRVIDTAAALNPQNICVVIGHGKEQVLDTVKRDVVWVEQTEQLGTGHAVKTALPHLSAEGRTLVLYGDVPLIDVETLETLLEAAGNEVGLLTDVPNDPTGLGRIIRDSNGSVTAIVEEKDADAVQKAVKEINTGILVLPNAKLENWLNSLSSNNAQGEYYLTDLIAKAVADGIKVHPVQVRASHLAAGVNNKLQLTELERIFQTEQAQELLKAGVTLRDPARFDLRGRLKHGQDVVIDVNCIFEGDIELGDNVEIGANCVIKNAKIGANSKIAPFSHLESCEVGENNRIGPYARLRPQARLADDVHVGNFVEIKNAAIGKGTKANHLTYIGDAEVGCKTNFGAGTIIANYDGVHKHKTVIGDEVRIGSNCVLVAPVTLGNKVTTGAGSTITRNVEDNKLALARARQTVIEGWVRPEKDKQ
>NZ_FFCX01000034.1|WP_002225768.1|9627_9957_+|alkylphosphonate-utilization-protein
MSLPPCPQCASEYTYEDGGQYICPECAHEWNETESAADLAAQVRDANGAVLQNGDTVILIKDLKVKGSSMVIKQGTKVKGIRLQEGDHNIGCKIDGSAMNLKSEFVKKA

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Crispr_ID: NZ_FFCX01000034_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_FFCX01000034_2

472-643

Orphan

I-E

Consensus_repeat	Method
GATTCCCGCCTGCGCGGGAATGACGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_FFCX01000034_2

>merge|NZ_FFCX01000034|2|472-643|CRISPRCasFinder
GATTCCCGCCTGCGCGGGAATAACGGGTCTTTTATAAACTTTGAATATTGCCGTTATCCCAAGGTCTAGATTCCCGCCTACGCGGGAATGACGGTTTAGAAGTTGCCCGAAACCTCAAAAAAAAAAACCGAAACCGAACAAGCCGGATTCCCGCCTGCGCGGGAATGACGGG

>NZ_FFCX01000034|2|2|472-643|CRISPRCasFinder
GATTCCCGCCTGCGCGGGAATAACGG	GTCTTTTATAAACTTTGAATATTGCCGTTATCCCAAGGTCTA
GATTCCCGCCTACGCGGGAATGACGG	TTTAGAAGTTGCCCGAAACCTCAAAAAAAAAAACCGAAACCGAACAAGCCG
GATTCCCGCCTGCGCGGGAATGACGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_FFCX01000034.1\|WP_002243925.1\|7855_8128_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369706
NZ_FFCX01000034.1\|WP_002215245.1\|4636_5122_-\|CinA-family-protein	unknown	unknown	gnl\|CDD\|334938
NZ_FFCX01000034.1\|WP_002243926.1\|7149_7863_+\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|273917
NZ_FFCX01000034.1\|WP_002221795.1\|2966_4535_+\|bifunctional-peptide-methionine-(S)-S-oxide-reductase-MsrA/peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|184456
NZ_FFCX01000034.1\|WP_002243928.1\|1555_2821_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_FFCX01000034.1\|WP_002215243.1\|5147_5996_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_FFCX01000034.1\|WP_002243924.1\|10028_11294_-\|deferrochelatase/peroxidase-EfeB	unknown	unknown	gnl\|CDD\|273606
NZ_FFCX01000034.1\|WP_002243927.1\|6089_7091_-\|thiamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|130321
NZ_FFCX01000034.1\|WP_002225768.1\|9627_9957_+\|alkylphosphonate-utilization-protein	unknown	unknown	gnl\|CDD\|225380
NZ_FFCX01000034.1\|WP_002225769.1\|8182_9553_+\|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273482

Protein	Function_ID	Function_description	E-value
NZ_FFCX01000034.1\|WP_002243925.1\|7855_8128_+\|hypothetical-protein	gnl\|CDD\|369706	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	0.000166952
NZ_FFCX01000034.1\|WP_002215245.1\|4636_5122_-\|CinA-family-protein	gnl\|CDD\|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	5.3821e-69
NZ_FFCX01000034.1\|WP_002243926.1\|7149_7863_+\|pyrimidine-5'-nucleotidase	gnl\|CDD\|273917	TIGR01993, Suppressor_of_disruption_of_TFIIS, pyrimidine 5'-nucleotidase. This family of proteins includes the SDT1/SSM1 gene from yeast which has been shown to code for a pyrimidine (UMP/CMP) 5'nucleotidase. The family spans plants, fungi and a small number of bacteria. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).	1.21507e-87
NZ_FFCX01000034.1\|WP_002221795.1\|2966_4535_+\|bifunctional-peptide-methionine-(S)-S-oxide-reductase-MsrA/peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	0
NZ_FFCX01000034.1\|WP_002243928.1\|1555_2821_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	6.63714e-175
NZ_FFCX01000034.1\|WP_002215243.1\|5147_5996_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	3.47239e-50
NZ_FFCX01000034.1\|WP_002243924.1\|10028_11294_-\|deferrochelatase/peroxidase-EfeB	gnl\|CDD\|273606	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme. This model represents a small family of proteins with a typical Tat (twin-arginine translocation) signal sequence, suggesting that the family is exported in a folded state, perhaps with a bound redox cofactor. Members of this family show homology to Dyp, a dye-decolorizing peroxidase from Geotrichum candidum that lacks any typical heme-binding site.	0
NZ_FFCX01000034.1\|WP_002243927.1\|6089_7091_-\|thiamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|130321	TIGR01254, Thiamine-binding_periplasmic_protein, ABC transporter periplasmic binding protein, thiB subfamily. The model describes thiamine ABC transporter, periplasmic protein in bacteria and archae. The protein belongs to the larger ABC transport system. It consists of at least three components: the thiamine binding periplasmic protein; an inner membrane permease; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other].	3.46057e-151
NZ_FFCX01000034.1\|WP_002225768.1\|9627_9957_+\|alkylphosphonate-utilization-protein	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	2.00117e-63
NZ_FFCX01000034.1\|WP_002225769.1\|8182_9553_+\|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase	gnl\|CDD\|273482	TIGR01173, Bifunctional_glmU_protein_., UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars].	0

>NZ_FFCX01000034.1|WP_002243928.1|1555_2821_-|signal-recognition-particle-docking-protein-FtsY
MFSFFRRKKKQETPALEEAQIQETAAKAESELAQIVENIKEDAESLAESVKGQVESAVETVSGAVEQVKETVAEMLSEAEEAAEKAAEQVEAAKEAVAETVGEAVGQVQEAVATTEEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVDALLD
>NZ_FFCX01000034.1|WP_002221795.1|2966_4535_+|bifunctional-peptide-methionine-(S)-S-oxide-reductase-MsrA/peptide-methionine-(R)-S-oxide-reductase-MsrB
MKHRTFFSLCAKFGCLLALGACSPKIVDAGAATVPHTLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPNADLGSLKHSFYKPDTQKKDSKIMNTRTIYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPLKNFYDAEEYHQDYLIKNPNGYCHIDIRKADEPLPGKTKTAPQGKGFDAATYKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPLEQMDAAGYGALKGKVK
>NZ_FFCX01000034.1|WP_002215245.1|4636_5122_-|CinA-family-protein
MDALHTIARNLTKKRQTVSCAESCTGGMLAAAFTSVAGSSQWFDQSFVTYSNKAKEDRLGVLPETLLEHGAVSRQTVYEMARGAKAVAQADYAVGISGIAGPGGGSESKPVGTVWFGFAFPGGSCEAMRRFDGNRESVRAQAVAFALERLAGLIENGGDAV
>NZ_FFCX01000034.1|WP_002215243.1|5147_5996_-|mechanosensitive-ion-channel-family-protein
MDFKQFDFLHLISVSGWEHLAEKAWAFGLNLAAALLIFLVGKWAAKRIVAVMRAAMTRAQVDATLISFLCNVANIGLLILVIIAALGRLGVSTTSVTALIGGAGLAVALSLKDQLSNFAAGALIILFRPFKVGDFIRVGGFEGYVREIKMVQTSLRTTDNEEVVLPNSVVMGNSIVNRSTLPLCRAQVIVGVDYNCDLKVAKEAVLKAAVEHPLSVQNEERQAAAYITALGDNAIEITLWAWANEADRWTLQCDLNEQVVENLRKVNINIPFPQRDIHIINS
>NZ_FFCX01000034.1|WP_002243927.1|6089_7091_-|thiamine-ABC-transporter-substrate-binding-protein
MKRKIWLLPLLAVSAYLQAQTEVRLAVHKSFSLPKGLIARFERANDAKVSIIQAGGANEMLNKLILSRANPIADAVYGLDNANIGKAREMGILAAAQPESAPVAVGLPSALAVDYGYVSINYDKKWFEGKKLPLPQTLQDLTRPEYKNLLVVPSPATSSPGLGFLMANISGLGEESAFKWWAQMRQNGVKVAKGWSEAYYTDFSHNGGAYPLVVGYAASPAAEVYFSKGKYSEPPTGNLFLKGGVFRQVEGAAVLKGAKQPELAAKLVQWLQSREVQQAVPSEMWVYPAVKNTRLPDVFRFAQAPTHTTAPAQRDIDANQRGWVSRWIRTVLK
>NZ_FFCX01000034.1|WP_002243926.1|7149_7863_+|pyrimidine-5'-nucleotidase
MQENPTVWLFDLDNTLHDADAGIFTLINRAMTRYMARRLKLSESAASDLRQDYWHRYGATLAGLQIHHPEIDIAEFLRESHPIDAILTRLHGMPETQNTLSRLKGRKAVFSNGPSFYVRAVVNALGLENRFDALFGTDDFGLLYKPNPQAYLNVCRLLDVPPECCIMVDDSADNLHQAKALGMKTVRFGAKSHALPFIDASVSDMAQLARYAETLSEHRQNHYNTPYPPKIRKKSHA
>NZ_FFCX01000034.1|WP_002243925.1|7855_8128_+|hypothetical-protein
MRKTFLFLTAAAALLSGCAWETYQDGNGKTAVRQKYPAGTPVYYQDGSYSKNMNYNQYRPERHAVLPNQTGNNADEEHRQHWQKPKFQNR
>NZ_FFCX01000034.1|WP_002225769.1|8182_9553_+|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase
MPQNTLNIVILAAGKGTRMYSKMPKVLHRIGGKPMVGRVIDTAAALNPQNICVVIGHGKEQVLDTVKRDVVWVEQTEQLGTGHAVKTALPHLSAEGRTLVLYGDVPLIDVETLETLLEAAGNEVGLLTDVPNDPTGLGRIIRDSNGSVTAIVEEKDADAVQKAVKEINTGILVLPNAKLENWLNSLSSNNAQGEYYLTDLIAKAVADGIKVHPVQVRASHLAAGVNNKLQLTELERIFQTEQAQELLKAGVTLRDPARFDLRGRLKHGQDVVIDVNCIFEGDIELGDNVEIGANCVIKNAKIGANSKIAPFSHLESCEVGENNRIGPYARLRPQARLADDVHVGNFVEIKNAAIGKGTKANHLTYIGDAEVGCKTNFGAGTIIANYDGVHKHKTVIGDEVRIGSNCVLVAPVTLGNKVTTGAGSTITRNVEDNKLALARARQTVIEGWVRPEKDKQ
>NZ_FFCX01000034.1|WP_002225768.1|9627_9957_+|alkylphosphonate-utilization-protein
MSLPPCPQCASEYTYEDGGQYICPECAHEWNETESAADLAAQVRDANGAVLQNGDTVILIKDLKVKGSSMVIKQGTKVKGIRLQEGDHNIGCKIDGSAMNLKSEFVKKA
>NZ_FFCX01000034.1|WP_002243924.1|10028_11294_-|deferrochelatase/peroxidase-EfeB
MSKKQPAQPTRRTLFKTAIAAGAVGAIGGYLGGKKQGETAERTAESQHSPQAYPCYGEHQAGIVTPQQAFSIMCAFDVTAQSAKQLENLFRTLTARIEFLTQGGEYQDGDDKLPPAGSGILGKAFNPDGLTVTVGVGSSLFDGRFGLKDKKPIHLQEMRDFSNDKLQKSWCDGDLSLQICAFTPETCQAALRDIIKHTVQTAVIRWSIDGWQPKSEPGAMAARNLLGFRDGTGNPKVSDPKTADEVLWTGVAANSLDEPEWAKNGSYQAVRLIRHFVEFWDRTPLQEQTDIFGRRKYSGAPMDGKKEADQPDFAKDPEGDITPKDSHIRLANPRDPEFLKKHRLFRRAYSYSRGLASSGQLDVGLVFVCYQANLADGFIFVQNLLNGEPLEEYISPFGGGYFFVLPGVEKGGFLGQGLLGV

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Crispr_ID: NZ_FFCX01000034_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_FFCX01000034_3

1270-1367

Orphan

I-E

Consensus_repeat	Method
GATTCCCGCCTGCGCGGGAATGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_FFCX01000034_3

>merge|NZ_FFCX01000034|3|1270-1367|CRISPRCasFinder
GATTCCCGCCTGCGCGGGAATGACGGCATCGGTCTGCCGTTACAACACGGTTTCTTTAGATTTTACGTTCTAGATTCCCGCCTGCGCGGGAATGACGA

>NZ_FFCX01000034|3|3|1270-1367|CRISPRCasFinder
GATTCCCGCCTGCGCGGGAATGACGG	CATCGGTCTGCCGTTACAACACGGTTTCTTTAGATTTTACGTTCTA
GATTCCCGCCTGCGCGGGAATGACGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_FFCX01000034.1\|WP_002243925.1\|7855_8128_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369706
NZ_FFCX01000034.1\|WP_002215245.1\|4636_5122_-\|CinA-family-protein	unknown	unknown	gnl\|CDD\|334938
NZ_FFCX01000034.1\|WP_002216166.1\|643_928_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198395
NZ_FFCX01000034.1\|WP_002243926.1\|7149_7863_+\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|273917
NZ_FFCX01000034.1\|WP_002221795.1\|2966_4535_+\|bifunctional-peptide-methionine-(S)-S-oxide-reductase-MsrA/peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|184456
NZ_FFCX01000034.1\|WP_002243928.1\|1555_2821_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_FFCX01000034.1\|WP_002215243.1\|5147_5996_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_FFCX01000034.1\|WP_002243924.1\|10028_11294_-\|deferrochelatase/peroxidase-EfeB	unknown	unknown	gnl\|CDD\|273606
NZ_FFCX01000034.1\|WP_002243927.1\|6089_7091_-\|thiamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|130321
NZ_FFCX01000034.1\|WP_002225768.1\|9627_9957_+\|alkylphosphonate-utilization-protein	unknown	unknown	gnl\|CDD\|225380
NZ_FFCX01000034.1\|WP_002225769.1\|8182_9553_+\|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273482

Protein	Function_ID	Function_description	E-value
NZ_FFCX01000034.1\|WP_002243925.1\|7855_8128_+\|hypothetical-protein	gnl\|CDD\|369706	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	0.000166952
NZ_FFCX01000034.1\|WP_002215245.1\|4636_5122_-\|CinA-family-protein	gnl\|CDD\|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	5.3821e-69
NZ_FFCX01000034.1\|WP_002216166.1\|643_928_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198395	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria. The family includes a group of uncharacterized bacterial proteins with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC.	9.46959e-53
NZ_FFCX01000034.1\|WP_002243926.1\|7149_7863_+\|pyrimidine-5'-nucleotidase	gnl\|CDD\|273917	TIGR01993, Suppressor_of_disruption_of_TFIIS, pyrimidine 5'-nucleotidase. This family of proteins includes the SDT1/SSM1 gene from yeast which has been shown to code for a pyrimidine (UMP/CMP) 5'nucleotidase. The family spans plants, fungi and a small number of bacteria. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).	1.21507e-87
NZ_FFCX01000034.1\|WP_002221795.1\|2966_4535_+\|bifunctional-peptide-methionine-(S)-S-oxide-reductase-MsrA/peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	0
NZ_FFCX01000034.1\|WP_002243928.1\|1555_2821_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	6.63714e-175
NZ_FFCX01000034.1\|WP_002215243.1\|5147_5996_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	3.47239e-50
NZ_FFCX01000034.1\|WP_002243924.1\|10028_11294_-\|deferrochelatase/peroxidase-EfeB	gnl\|CDD\|273606	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme. This model represents a small family of proteins with a typical Tat (twin-arginine translocation) signal sequence, suggesting that the family is exported in a folded state, perhaps with a bound redox cofactor. Members of this family show homology to Dyp, a dye-decolorizing peroxidase from Geotrichum candidum that lacks any typical heme-binding site.	0
NZ_FFCX01000034.1\|WP_002243927.1\|6089_7091_-\|thiamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|130321	TIGR01254, Thiamine-binding_periplasmic_protein, ABC transporter periplasmic binding protein, thiB subfamily. The model describes thiamine ABC transporter, periplasmic protein in bacteria and archae. The protein belongs to the larger ABC transport system. It consists of at least three components: the thiamine binding periplasmic protein; an inner membrane permease; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other].	3.46057e-151
NZ_FFCX01000034.1\|WP_002225768.1\|9627_9957_+\|alkylphosphonate-utilization-protein	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	2.00117e-63
NZ_FFCX01000034.1\|WP_002225769.1\|8182_9553_+\|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase	gnl\|CDD\|273482	TIGR01173, Bifunctional_glmU_protein_., UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars].	0

>NZ_FFCX01000034.1|WP_002216166.1|643_928_-|GIY-YIG-nuclease-family-protein
MQPAVYILASQRNGTLYIGVTSDLVQRIYQHREHLIEGFTSRYNVTMLVWYELHPTMESAITREKQLKKWNRAWKLQLIEENNVSWQDLWFDII
>NZ_FFCX01000034.1|WP_002243928.1|1555_2821_-|signal-recognition-particle-docking-protein-FtsY
MFSFFRRKKKQETPALEEAQIQETAAKAESELAQIVENIKEDAESLAESVKGQVESAVETVSGAVEQVKETVAEMLSEAEEAAEKAAEQVEAAKEAVAETVGEAVGQVQEAVATTEEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVDALLD
>NZ_FFCX01000034.1|WP_002221795.1|2966_4535_+|bifunctional-peptide-methionine-(S)-S-oxide-reductase-MsrA/peptide-methionine-(R)-S-oxide-reductase-MsrB
MKHRTFFSLCAKFGCLLALGACSPKIVDAGAATVPHTLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPNADLGSLKHSFYKPDTQKKDSKIMNTRTIYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPLKNFYDAEEYHQDYLIKNPNGYCHIDIRKADEPLPGKTKTAPQGKGFDAATYKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPLEQMDAAGYGALKGKVK
>NZ_FFCX01000034.1|WP_002215245.1|4636_5122_-|CinA-family-protein
MDALHTIARNLTKKRQTVSCAESCTGGMLAAAFTSVAGSSQWFDQSFVTYSNKAKEDRLGVLPETLLEHGAVSRQTVYEMARGAKAVAQADYAVGISGIAGPGGGSESKPVGTVWFGFAFPGGSCEAMRRFDGNRESVRAQAVAFALERLAGLIENGGDAV
>NZ_FFCX01000034.1|WP_002215243.1|5147_5996_-|mechanosensitive-ion-channel-family-protein
MDFKQFDFLHLISVSGWEHLAEKAWAFGLNLAAALLIFLVGKWAAKRIVAVMRAAMTRAQVDATLISFLCNVANIGLLILVIIAALGRLGVSTTSVTALIGGAGLAVALSLKDQLSNFAAGALIILFRPFKVGDFIRVGGFEGYVREIKMVQTSLRTTDNEEVVLPNSVVMGNSIVNRSTLPLCRAQVIVGVDYNCDLKVAKEAVLKAAVEHPLSVQNEERQAAAYITALGDNAIEITLWAWANEADRWTLQCDLNEQVVENLRKVNINIPFPQRDIHIINS
>NZ_FFCX01000034.1|WP_002243927.1|6089_7091_-|thiamine-ABC-transporter-substrate-binding-protein
MKRKIWLLPLLAVSAYLQAQTEVRLAVHKSFSLPKGLIARFERANDAKVSIIQAGGANEMLNKLILSRANPIADAVYGLDNANIGKAREMGILAAAQPESAPVAVGLPSALAVDYGYVSINYDKKWFEGKKLPLPQTLQDLTRPEYKNLLVVPSPATSSPGLGFLMANISGLGEESAFKWWAQMRQNGVKVAKGWSEAYYTDFSHNGGAYPLVVGYAASPAAEVYFSKGKYSEPPTGNLFLKGGVFRQVEGAAVLKGAKQPELAAKLVQWLQSREVQQAVPSEMWVYPAVKNTRLPDVFRFAQAPTHTTAPAQRDIDANQRGWVSRWIRTVLK
>NZ_FFCX01000034.1|WP_002243926.1|7149_7863_+|pyrimidine-5'-nucleotidase
MQENPTVWLFDLDNTLHDADAGIFTLINRAMTRYMARRLKLSESAASDLRQDYWHRYGATLAGLQIHHPEIDIAEFLRESHPIDAILTRLHGMPETQNTLSRLKGRKAVFSNGPSFYVRAVVNALGLENRFDALFGTDDFGLLYKPNPQAYLNVCRLLDVPPECCIMVDDSADNLHQAKALGMKTVRFGAKSHALPFIDASVSDMAQLARYAETLSEHRQNHYNTPYPPKIRKKSHA
>NZ_FFCX01000034.1|WP_002243925.1|7855_8128_+|hypothetical-protein
MRKTFLFLTAAAALLSGCAWETYQDGNGKTAVRQKYPAGTPVYYQDGSYSKNMNYNQYRPERHAVLPNQTGNNADEEHRQHWQKPKFQNR
>NZ_FFCX01000034.1|WP_002225769.1|8182_9553_+|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase
MPQNTLNIVILAAGKGTRMYSKMPKVLHRIGGKPMVGRVIDTAAALNPQNICVVIGHGKEQVLDTVKRDVVWVEQTEQLGTGHAVKTALPHLSAEGRTLVLYGDVPLIDVETLETLLEAAGNEVGLLTDVPNDPTGLGRIIRDSNGSVTAIVEEKDADAVQKAVKEINTGILVLPNAKLENWLNSLSSNNAQGEYYLTDLIAKAVADGIKVHPVQVRASHLAAGVNNKLQLTELERIFQTEQAQELLKAGVTLRDPARFDLRGRLKHGQDVVIDVNCIFEGDIELGDNVEIGANCVIKNAKIGANSKIAPFSHLESCEVGENNRIGPYARLRPQARLADDVHVGNFVEIKNAAIGKGTKANHLTYIGDAEVGCKTNFGAGTIIANYDGVHKHKTVIGDEVRIGSNCVLVAPVTLGNKVTTGAGSTITRNVEDNKLALARARQTVIEGWVRPEKDKQ
>NZ_FFCX01000034.1|WP_002225768.1|9627_9957_+|alkylphosphonate-utilization-protein
MSLPPCPQCASEYTYEDGGQYICPECAHEWNETESAADLAAQVRDANGAVLQNGDTVILIKDLKVKGSSMVIKQGTKVKGIRLQEGDHNIGCKIDGSAMNLKSEFVKKA
>NZ_FFCX01000034.1|WP_002243924.1|10028_11294_-|deferrochelatase/peroxidase-EfeB
MSKKQPAQPTRRTLFKTAIAAGAVGAIGGYLGGKKQGETAERTAESQHSPQAYPCYGEHQAGIVTPQQAFSIMCAFDVTAQSAKQLENLFRTLTARIEFLTQGGEYQDGDDKLPPAGSGILGKAFNPDGLTVTVGVGSSLFDGRFGLKDKKPIHLQEMRDFSNDKLQKSWCDGDLSLQICAFTPETCQAALRDIIKHTVQTAVIRWSIDGWQPKSEPGAMAARNLLGFRDGTGNPKVSDPKTADEVLWTGVAANSLDEPEWAKNGSYQAVRLIRHFVEFWDRTPLQEQTDIFGRRKYSGAPMDGKKEADQPDFAKDPEGDITPKDSHIRLANPRDPEFLKKHRLFRRAYSYSRGLASSGQLDVGLVFVCYQANLADGFIFVQNLLNGEPLEEYISPFGGGYFFVLPGVEKGGFLGQGLLGV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_FFCX01000034_2	2.2\|566\|51\|NZ_FFCX01000034\|CRISPRCasFinder	566-616	51	NZ_FFCX01000007.1	28078-28128	2	0.961
NZ_FFCX01000034_3	3.1\|1296\|46\|NZ_FFCX01000034\|CRISPRCasFinder	1296-1341	46	NZ_FFCX01000093.1	18-63	0	1.0

1. spacer 2.2|566|51|NZ_FFCX01000034|CRISPRCasFinder matches to position: 28078-28128, mismatch: 2, identity: 0.961

tttagaagttgcccgaaacctcaaaaaaaaaaaccgaaaccgaacaagccg	CRISPR spacer
tttagaagttgcccgaaacctcaaaaaaaaaaaccgaaaccgaacagaccg	Protospacer
**********************************************..***

2. spacer 3.1|1296|46|NZ_FFCX01000034|CRISPRCasFinder matches to position: 18-63, mismatch: 0, identity: 1.0

catcggtctgccgttacaacacggtttctttagattttacgttcta	CRISPR spacer
catcggtctgccgttacaacacggtttctttagattttacgttcta	Protospacer
**********************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_FFCX01000046

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_FFCX01000008

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CRISPR-Cas detection and classification

Crispr_ID: NZ_FFCX01000008_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_FFCX01000008_1

7647-7817

Orphan

I-E

Consensus_repeat	Method
CGCCTGCGCGGGAATGACGGGAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_FFCX01000008_1

>merge|NZ_FFCX01000008|1|7647-7817|CRISPRCasFinder
CACTTTCGTGGGAATGACGCGATTAGAGTTTCAAAATTTATTCTAAATAGCTGAAACTCAACGCACTGGATTCCCGCCTGCGCGGGAATGACGGGATATACGTGGGAATGACGGGATATAGGTTTCCGTGCGGACGCGTTCGGATTCACGACTGCGCGGGAATGACGGGAT

>NZ_FFCX01000008|1|1|7647-7817|CRISPRCasFinder
CACTTTCGTGGGAATGACGCGAT	TAGAGTTTCAAAATTTATTCTAAATAGCTGAAACTCAACGCACTGGATTCC
CGCCTGCGCGGGAATGACGGGAT	ATACGTGGGAATGACGGGATATAGGTTTCCGTGCGGACGCGTTCGGATTCA
CGACTGCGCGGGAATGACGGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_FFCX01000008.1\|WP_002222071.1\|19996_20281_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379323
NZ_FFCX01000008.1\|WP_061726872.1\|1773_4791_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|225953
NZ_FFCX01000008.1\|WP_105165324.1\|6762_6954_-\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000008.1\|WP_061726775.1\|10100_12848_+\|lactoferrin/transferrin-family-TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273799
NZ_FFCX01000008.1\|WP_002236075.1\|20447_22340_+\|biosynthetic-arginine-decarboxylase	unknown	unknown	gnl\|CDD\|224088
NZ_FFCX01000008.1\|WP_002216584.1\|14118_15261_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_FFCX01000008.1\|WP_002220414.1\|22438_23362_+\|agmatinase	unknown	unknown	gnl\|CDD\|235011
NZ_FFCX01000008.1\|WP_002212556.1\|15563_15827_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_FFCX01000008.1\|WP_002212560.1\|17278_17980_+\|DUF502-domain-containing-protein	unknown	unknown	gnl\|CDD\|225480
NZ_FFCX01000008.1\|WP_061726774.1\|7915_10015_+\|transferrin-binding-protein-like-solute-binding-protein	unknown	unknown	gnl\|CDD\|366565
NZ_FFCX01000008.1\|WP_014573808.1\|18037_19846_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_FFCX01000008.1\|WP_025458525.1\|15987_17136_+\|phospholipase-A	unknown	unknown	gnl\|CDD\|225385

Protein	Function_ID	Function_description	E-value
NZ_FFCX01000008.1\|WP_025458525.1\|15987_17136_+\|phospholipase-A	gnl\|CDD\|225385	COG2829, PldA, Outer membrane phospholipase A [Cell envelope biogenesis, outer membrane].	1.04604e-156
NZ_FFCX01000008.1\|WP_002222071.1\|19996_20281_+\|PepSY-domain-containing-protein	gnl\|CDD\|379323	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain. This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase & Bacillus subtilis YPEB.	1.52322e-15
NZ_FFCX01000008.1\|WP_002212560.1\|17278_17980_+\|DUF502-domain-containing-protein	gnl\|CDD\|225480	COG2928, COG2928, Uncharacterized conserved protein [Function unknown].	2.84331e-90
NZ_FFCX01000008.1\|WP_014573808.1\|18037_19846_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_FFCX01000008.1\|WP_061726775.1\|10100_12848_+\|lactoferrin/transferrin-family-TonB-dependent-receptor	gnl\|CDD\|273799	TIGR01776, Lactoferrin-binding_protein_A, TonB-dependent lactoferrin and transferrin receptors. This family of TonB-dependent receptors are responsible for import of iron from the mammalian iron carriers lactoferrin and transferrin across the outer membrane. These receptors are found only in bacteria which can infect mammals such as Moraxella, Mannheimia, Neisseria, Actinobacillus, Pasteurella, Haemophilus and Histophilus species. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	0
NZ_FFCX01000008.1\|WP_002236075.1\|20447_22340_+\|biosynthetic-arginine-decarboxylase	gnl\|CDD\|224088	COG1166, SpeA, Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism].	0
NZ_FFCX01000008.1\|WP_002216584.1\|14118_15261_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.39298e-129
NZ_FFCX01000008.1\|WP_002220414.1\|22438_23362_+\|agmatinase	gnl\|CDD\|235011	PRK02190, PRK02190, agmatinase; Provisional.	0
NZ_FFCX01000008.1\|WP_002212556.1\|15563_15827_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.77816e-24
NZ_FFCX01000008.1\|WP_061726872.1\|1773_4791_+\|pilus-assembly-protein	gnl\|CDD\|225953	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion].	1.02063e-173
NZ_FFCX01000008.1\|WP_061726774.1\|7915_10015_+\|transferrin-binding-protein-like-solute-binding-protein	gnl\|CDD\|366565	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B. Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis, and cell adherence. Pathogenic Gram-negative bacteria within the Neisseriaceae and Pasteurellaceae families rely on a specialized uptake system, characterized by an essential surface receptor complex that acquires iron from host transferrin (Tf) and transports the iron across the outer membrane. They have an iron uptake system composed of surface exposed lipoprotein, Tf-binding protein B (TbpB), and an integral outer-membrane protein, Tf-binding protein A (TbpA), that together function to extract iron from the host iron binding glycoprotein (Tf). TbpB is a bilobed (N and C lobe) lipid-anchored protein with each lobe consisting of an eight-stranded beta barrel flanked by a handle domain made up of four (N lobe) or eight (C lobe) beta strands. TbpB extends from the outer membrane surface by virtue of an N-terminal peptide region that is anchored to the outer membrane by fatty acyl chains on the N-terminal cysteine and is involved in the initial capture of iron-loaded Tf. This domain family is found in C and N lobe eight stranded beta barrel region of TbpB proteins. The eight-stranded barrel domains in N and C lobe draw comparisons to eight-stranded beta barrel outer-membrane protein W (OmpW). However, the barrel domains of TbpB have the hydrophobic residues line the inner surface of the beta barrels to create a stable hydrophobic core.	1.63965e-33

>NZ_FFCX01000008.1|WP_105165324.1|6762_6954_-|hypothetical-protein
MGIQFFEFQSFPINCLSIECLDSRLRGNDGGAVSVRVIPTKVGIQDEKSQETVLSDKFPHRQT
>NZ_FFCX01000008.1|WP_061726872.1|1773_4791_+|pilus-assembly-protein
MNAQNLPEVKWGDQYQSLTHKSNEREVIHTSGFGLAKKSISFSFNNTDEVVAEKKDTVVFGAATYLPPYGKVSGFDTAKLTERKNALDQIGTTKTGLVGYSYEGSTCSSGGCPTVAYRTQFTFGNSSLAKKTNGGGLDIYEDKSRDNSPIYKLKDHPWLGVSFNLGGESSFKPKRQGSLVSSFSEDVTQQNGAGSQHKDKNLVYTTDDYKSQNNKNHQDKHHAVAFYLNAKLHLLDKKHIKNIVQGKTVNLGILKTRIEPTEAWKRRNSNFFNGSWTYEEKGTVSVKLKLPEVKAGRCINANNPNKSTKAPSPALTAPALWFGPVQNGKVQMYSASVSTYPDSSSSRIFLQNLKRKTDPNKPGRHSLADLAKSDIENRQPNFTGRQTIIRLDGGVQQIKLGRNNDEVANFNGNDGKNDTFGIVSEGSFMPDASEWKKVLLPWTVRASNDDGQFNTFNKEEKDGKPKYSQKYRSRDNGKHERNLGDIVNSPIVAVGEYLATSANDGMVHIFKQSGGDKRSYNLKLSYIPGTMPRKDIQNTESTLAKELRAFAEKSYVGDRYGVDGGFVLRKVERNGKDHVFMFGAMGFGGRGAYALDLSKIDSGNGNLADVSLFDVKHDKNGNNGVKLGYTVGTPQIGKTHNDKYAAFLASGYATKTIDDQQNKTALYVYDLESSGTLIKKIDVPGGKGGLSSPTLVDKDLDGTVDIAYAGDRGGSMYRFDLSSQDPKQWSARAIFKGDKPITSAPAISQLKDKRVVIFGTGSDLSEEDVDSKEIQHVYGIFDNDTDTGTAQDGQGKGLLEQVLSEENKTLFLTDYKRSNGSGSKGWMVKLQPGQRVTVKPTVVLRTAFVTIRKYTDNGCGAETAILGINTADGGKLTKKSARPIVPEANSKVAQYSGDKKTSSGKSIPIGCMEKDNGIVCPNGYVYDKPVNVRYLDEKKTDGFSTTADGDAGGSGIDPAGKRSGKNNRCFSQKGVRTLLMNDLDSLDITGPMCGMKRISWREIFY
>NZ_FFCX01000008.1|WP_061726774.1|7915_10015_+|transferrin-binding-protein-like-solute-binding-protein
MNNPLVNQAAMVLPVFLLSACLGGGGSFDLDSVDTEAPRPAPKYQDVSSEKPQAQKDQGGYGFAMRLKRRNWYRQANPKEDEIKLSENDWEQTDNGDIKNPSKQKNIINALTGNNGGASLQDSSQENQGISKVTGHHNFQYVWSGFFYKQIGSTVERKDSSITAARSGPDGYIFYKGKDPSRKLPVLGEVMYKGTWDFLTDVKANQKFTDLGNASTKSGDRYSAFSGELDYIVNKDSDKKDGHVGWGLTTEITVNFEKKTLSGRLIKNNRVNNNNDKHTTQYYSLEAQVTGNRFNGKATATDKPKNDGETKEHPFVSDSSSLSGGFFGPQGEELGFRFLSNDQKVAVVGSAKTQDKAESGGSNGASGGTDAAASNSAAGTSSENGKLTTVLDAVELKSGGKEVQKLDNFSNAAQLVVDGIMIPLLPKDSESGKTQADKGKNGETAFTYTTTYTPESDKKDAQAGTPTNGAQTASNTAGDANGKTKTYAVEVCCSNLNYLKYGLLTRKTAGNTGESGNGSPTAAQTDAQSMFLQGERTDEKEIPKEQNVVYRGSWYGYIANDKSTSWSGNASDKEGGNRAEFTVNFDTKKINGTLTADNRQAATFTIEGDIEGNGFSGTAKTDNLGFDLDQSDNTRTPKAYITDAKVQGGFYGPKAEELGGWFAYPGDKQTEKATATSSDGKSASSATVVFGAKRQQLVQ
>NZ_FFCX01000008.1|WP_061726775.1|10100_12848_+|lactoferrin/transferrin-family-TonB-dependent-receptor
MQQQHLFRLNILCLSLMTALPVYAENVQAGQAQEKQLDTIQVKAKKQKTRRDNEVTGLGKLVKTADTLSKEQVLDIRDLTRYDPGIAVVEQGRGASSGYSIRGMDKNRVSLTVDGLAQIQSYTAQAALGGTRTAGSSGAINEIEYENVKAVEISKGSNSVEQGSGALAGSVAFQTKTADDVIGEGRQWGIQSKTAYSGKNRGLTQSIALAGRIGGAEALLIHTGRRAGEIRAHEDAGRGVQSFNRLVPVEDTHPYANFIVEEECESGNYETCKSKPKKDIVGKDERQTVSTRDYTGPNRFLADPLSYESRSWLFRPGFRFENKRHYIGGILEHTQQTFDTRDMTVPAFLTKAVFDANKKQAGSLSGNGKYAGNHKYGGLFTNGENGALVGAEYGTGVFYDETHTKSRYGLEYVYTNADKDTWVDYARLSYDRQGIGLDNHFQQTHCSADGSDKYCRPSADKPFSYYKSDRVIYGESHRLLQAAFKKSFDTAKIRHNLSVNLGFDRFDSNLRHQDYYYQHANRAYSSNTPPQNNGKKISPNGSETSPYWVTIGRGNVVTGQICRLGNNTYTDCTPRSINGKSYYAAVRDNVRLGRWADVGAGLRYDYRSTHSDDGSVSTGTHRTLSWNAGIVLKPTDWLDLTYRTSTGFRLPSFAEMYGWRAGVQSKAVKIDPEKSFNKEAGIVFKGDFGNLEASWFNNAYRDLIVRGYEAQIKDGKEEAKGDPAYLNAQSARITGINILGKIDWNGVWDKLPEGWYSTFAYNRVRVRDIKKRADRTDIQSHLFDAIQPSRYVVGLGYDQPEGKWGVNGMLTYSKAKEITELLGSRALLNGNSRNTKATARRTRPWYIVDVSGYYTVKKHFTLRAGVYNLLNYRYVTWENVRQTAGGAVNQHKNVGVYNRYAAPGRNYTFSLEMKF
>NZ_FFCX01000008.1|WP_002216584.1|14118_15261_-|polyamine-ABC-transporter-substrate-binding-protein
MKKSVLAVLAALSLAACGGSEKNAVQPQADAASAANAEAAATDTLNIYNWSNYVDESTVEDFKKANNLKLTYDLYENNETLEAKMLTGKSGYDLVVPGIAFLPRQIEAGAYQKVNKDLIPNYKNIDPELLKMLETADPGNQYAVPYFSGVNTIAITAKGKELLGGKLPENGWDLLFKPEYTHKLKSCGIALWDTPSEMFPILLNYLGKDPKGSNPEDLKAAAEVLKSIRPDVKRFSPSIIDELARGDICLAAGNGGDLNLAKARSEEVKNNVGIEVLNPKGMGFWIESWLIPADAKNVANAHKYINYTLDPEIAAKNGIAVTFAPASKPAREKMPAELVNTRSIFPNEQDMKDGFVMPQMSTDAKKLSVSLWQKIKVGTN
>NZ_FFCX01000008.1|WP_002212556.1|15563_15827_+|30S-ribosomal-protein-S20
MANSAQARKRARQSVKQRAHNASLRTAFRTAVKKVLKAVEAGDKAAAQAVYQESVKVIDRIADKGVFHKNKAARHKSRLSAKVKALA
>NZ_FFCX01000008.1|WP_025458525.1|15987_17136_+|phospholipase-A
MPTMGAEMNTRNMRYILLTGLLPTVSAFGETALQCAALTDNVTRLACYDRIFAAQLPSSAGQEGQESKAVLNLTETVRSSLDKGEAVIVVEKGGDALPADSAGETADIYTPLSLMYDLDKNDLRGLLGVREHNPMYLMPLWYNNSPNYAPGSPTRGTTVQEKFGQQKRAETKLQVSFKSKIAEDLFKTRADLWFGYTQRSDWQIYNQGRKSAPFRNTDYKPEIFLTQPVKADLPFGGRLRMLGAGFVHQSNGQSRPESRSWNRIYAMAGMEWGKLTVIPRVWVRAFDQSGDKNDNPDIADYMGYGDVKLQYRLNDRQNVYSVLRYNPKTGYGAIEAAYTFPIKGKLKGVVRGFHGYGESLIDYNHKQNGIGIGLMFNDLDGI
>NZ_FFCX01000008.1|WP_002212560.1|17278_17980_+|DUF502-domain-containing-protein
MTEPAAEGGKAAKALKKYLITGILVWLPIAVTVWVVSYIVSASDQLVNLLPKQWRPQYVLGFNIPGLGVIVAIAVLFVTGLFAANVLGRQILAAWDSLLGRIPVVKSIYSSVKKVSESLLSDSSRSFKTPVLVPFPQSGIWTIAFVSGQVSNAVKAALPKDGDYLSVYVPTTPNPTGGYYIMVKKSDVRELDMSVDEALKYVISLGMVIPDDLPVKTLAGPMPSEKADLPEQQ
>NZ_FFCX01000008.1|WP_014573808.1|18037_19846_+|aspartate--tRNA-ligase
MRTNYCGLISEQYLDQTVTVKGWVHRRRDHGGVIFIDLRDREGIVQVVIDPDTPEAFAAADSARNEYVLSITGRVRNRPEGTTNDKMISGKIEILAKEIEVLNAAATPPFQIDDENISENVRLTNRVIDLRRPVMQRNLRLRYQVAMGVRRYLDAQGFIDIETPMLTRSTPEGARDYLVPSRVHPGEFFALPQSPQLFKQLLMVAGFDRYYQITKCFRDEDLRADRQPEFTQIDLETSFLNEDEIMDITEGMAKQVFKDALGVDLGGFPRMPYAEAMFYYGSDKPDMRIGLKFTELTDLMKTEEFKVFRGAADMKGGRVVALRVPNGAKFSRKEIDEYTKFVGIYGAKGLAYIKVNDVGNLSNGEDSGLQSPIVKFLSENALKEIIERTGAQNGDIIFFGADKTKVVNEAIGALRIKVGLEHGKDNGYFTDEWKPLWVVDFPMFEYDEEADRYVAVHHPFTAPKEGHEDLMVSDPANCLARAYDMVLNGWEIGGGSIRIHRADVQEKVFAALKISPEEQQEKFGFLLDNLKFGAPPHGGLAFGLDRLVTLMTGAESIRDVIAFPKTQRAQCLLTNAPNSVDDKQLRELSLRLRQKVAETKEA
>NZ_FFCX01000008.1|WP_002222071.1|19996_20281_+|PepSY-domain-containing-protein
MKKLLLAAVVSLSAATAFADDSAERQIYGDPHFEQNRTKAVKMLEQRGYQVHDVDADDHWGKPVLEVEAYKDGREYDIVLSYPDLKIIKEQLDR
>NZ_FFCX01000008.1|WP_002236075.1|20447_22340_+|biosynthetic-arginine-decarboxylase
MPILTIREVCNINHWGIGYYDVDDSGEIIVCPNPAQHNQTVSLQKLTEAVQQKHQARLPVLFCFPQILEHRLRDINRAFQTAREECGYKGGYCLVYPIKVNQHRRVIESLMSSGQPHGLEAGSKAELMAVLAHAGTRQTLIVCNGYKDREYIRFALMGEKLGHQVYLVIEKLSEIQMVLEEAEKLGIKPRLGVRARLASQGSGKWQSSGGEKSKFGLSASQVLQLVDILKQKNRLDCLQLLHFHLGSQLGNIRDVATGVHESARFYVELHKLGVNIRCFDVGGGLGVDYEGNRTQSDCSVNYSLNEYAATVVWGISQACLEHGLPHPTIITESGRGITAHHAVLVANVIGVERYKPRRLDAPSPEAPRVLHSMWETWTDISASREKRSLRSWIHEGQFDLADVHNQYNVGLLSLAQRAWAEQLYLNICHEVGELFNEKHRSHRTIIDELQERFADKLYVNFSLFQSLPDAWGIDQLFPVCPITGLNEPIARRAVLLDITCDSDGTIDHYIDGDGIAGTMPMPDYPEEEPPLLGFFMVGAYQEILGNMHNLFGDTATADVVVGEDGQFTVIDYDEGNTVADMLEYVYQDPKELMKRYREQIEHSDLPASQAMSFLKELEAGLNGYTYLEDE
>NZ_FFCX01000008.1|WP_002220414.1|22438_23362_+|agmatinase
MQYSTLAGQTDNSLVSNNFGFLRLPLNFMPYESHADWVITGVPYDMAVSGRSGARFGPEAIRRASVNLAWEHRRFPWTFDVRERLNIIDCGDLVFSFGDSRDFVEKMEAHAGKLLSSGKRCLSLGGDHFITLPLLRAHARYFGKLALIHFDAHTDTYDNGSEYDHGTMFYTAPKEGLIDPSRSVQIGIRTEHSKKLPFTVLTAPQVNEDSVEETVRKIKETVGNMPVYLTFDIDCLDPSFAPGTGTPVCGGLSSDRALKILRGLTDLDIVGMDVVEVAPSYDQSDITALAGATIALEMLYLQGAKKD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_FFCX01000008_1	1.1\|7670\|51\|NZ_FFCX01000008\|CRISPRCasFinder	7670-7720	51	NZ_FFCX01000002.1	117264-117314	1	0.98
NZ_FFCX01000008_1	1.1\|7670\|51\|NZ_FFCX01000008\|CRISPRCasFinder	7670-7720	51	NZ_FFCX01000006.1	31748-31798	0	1.0
NZ_FFCX01000008_1	1.1\|7670\|51\|NZ_FFCX01000008\|CRISPRCasFinder	7670-7720	51	NZ_FFCX01000006.1	32048-32098	0	1.0
NZ_FFCX01000008_1	1.1\|7670\|51\|NZ_FFCX01000008\|CRISPRCasFinder	7670-7720	51	NZ_FFCX01000006.1	78081-78131	0	1.0
NZ_FFCX01000008_1	1.1\|7670\|51\|NZ_FFCX01000008\|CRISPRCasFinder	7670-7720	51	NZ_FFCX01000008.1	4-54	0	1.0
NZ_FFCX01000008_1	1.1\|7670\|51\|NZ_FFCX01000008\|CRISPRCasFinder	7670-7720	51	NZ_FFCX01000008.1	1186-1236	0	1.0
NZ_FFCX01000008_1	1.1\|7670\|51\|NZ_FFCX01000008\|CRISPRCasFinder	7670-7720	51	NZ_FFCX01000008.1	5946-5996	0	1.0
NZ_FFCX01000008_1	1.1\|7670\|51\|NZ_FFCX01000008\|CRISPRCasFinder	7670-7720	51	NZ_FFCX01000008.1	6503-6553	0	1.0
NZ_FFCX01000008_1	1.1\|7670\|51\|NZ_FFCX01000008\|CRISPRCasFinder	7670-7720	51	NZ_FFCX01000008.1	7106-7156	0	1.0
NZ_FFCX01000008_1	1.1\|7670\|51\|NZ_FFCX01000008\|CRISPRCasFinder	7670-7720	51	NZ_FFCX01000013.1	49771-49821	0	1.0
NZ_FFCX01000008_1	1.1\|7670\|51\|NZ_FFCX01000008\|CRISPRCasFinder	7670-7720	51	NZ_FFCX01000028.1	6775-6825	1	0.98
NZ_FFCX01000008_1	1.1\|7670\|51\|NZ_FFCX01000008\|CRISPRCasFinder	7670-7720	51	NZ_FFCX01000028.1	7339-7389	2	0.961
NZ_FFCX01000008_1	1.1\|7670\|51\|NZ_FFCX01000008\|CRISPRCasFinder	7670-7720	51	NZ_FFCX01000046.1	296-346	1	0.98

1. spacer 1.1|7670|51|NZ_FFCX01000008|CRISPRCasFinder matches to position: 117264-117314, mismatch: 1, identity: 0.98

tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	CRISPR spacer
tagagtttcaaaatttattctaaatagctgaaactcaacgcattggattcc	Protospacer
******************************************.********

2. spacer 1.1|7670|51|NZ_FFCX01000008|CRISPRCasFinder matches to position: 31748-31798, mismatch: 0, identity: 1.0

tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	CRISPR spacer
tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	Protospacer
***************************************************

3. spacer 1.1|7670|51|NZ_FFCX01000008|CRISPRCasFinder matches to position: 32048-32098, mismatch: 0, identity: 1.0

tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	CRISPR spacer
tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	Protospacer
***************************************************

4. spacer 1.1|7670|51|NZ_FFCX01000008|CRISPRCasFinder matches to position: 78081-78131, mismatch: 0, identity: 1.0

tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	CRISPR spacer
tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	Protospacer
***************************************************

5. spacer 1.1|7670|51|NZ_FFCX01000008|CRISPRCasFinder matches to position: 4-54, mismatch: 0, identity: 1.0

tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	CRISPR spacer
tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	Protospacer
***************************************************

6. spacer 1.1|7670|51|NZ_FFCX01000008|CRISPRCasFinder matches to position: 1186-1236, mismatch: 0, identity: 1.0

tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	CRISPR spacer
tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	Protospacer
***************************************************

7. spacer 1.1|7670|51|NZ_FFCX01000008|CRISPRCasFinder matches to position: 5946-5996, mismatch: 0, identity: 1.0

tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	CRISPR spacer
tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	Protospacer
***************************************************

8. spacer 1.1|7670|51|NZ_FFCX01000008|CRISPRCasFinder matches to position: 6503-6553, mismatch: 0, identity: 1.0

tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	CRISPR spacer
tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	Protospacer
***************************************************

9. spacer 1.1|7670|51|NZ_FFCX01000008|CRISPRCasFinder matches to position: 7106-7156, mismatch: 0, identity: 1.0

tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	CRISPR spacer
tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	Protospacer
***************************************************

10. spacer 1.1|7670|51|NZ_FFCX01000008|CRISPRCasFinder matches to position: 49771-49821, mismatch: 0, identity: 1.0

tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	CRISPR spacer
tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	Protospacer
***************************************************

11. spacer 1.1|7670|51|NZ_FFCX01000008|CRISPRCasFinder matches to position: 6775-6825, mismatch: 1, identity: 0.98

tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	CRISPR spacer
taaagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	Protospacer
**.************************************************

12. spacer 1.1|7670|51|NZ_FFCX01000008|CRISPRCasFinder matches to position: 7339-7389, mismatch: 2, identity: 0.961

tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	CRISPR spacer
taaagtttcaaaatttattctaaatagctgaaactcaacgcactagattcc	Protospacer
**.*****************************************.******

13. spacer 1.1|7670|51|NZ_FFCX01000008|CRISPRCasFinder matches to position: 296-346, mismatch: 1, identity: 0.98

tagagtttcaaaatttattctaaatagctgaaactcaacgcactggattcc	CRISPR spacer
tagagtttcaaaatttattctaaatagctgaagctcaacgcactggattcc	Protospacer
********************************.******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_FFCX01000015

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_FFCX01000015_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_FFCX01000015_1

28045-28146

Orphan

Consensus_repeat	Method
GGGTTTCTGTTTTTTCCGATAGATTCC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_FFCX01000015_1

>merge|NZ_FFCX01000015|1|28045-28146|CRISPRCasFinder
GGGTTTCTGTTTTTTCCGATAGATTCCCGTGGTTTTTCGGTTACTGGATTCCCGCGTTCGCGGGAATGACGGTCGAGGGTTTCTGTTTTTCCGATAGATTCC

>NZ_FFCX01000015|1|1|28045-28146|CRISPRCasFinder
GGGTTTCTGTTTTTTCCGATAGATTCC	CGTGGTTTTTCGGTTACTGGATTCCCGCGTTCGCGGGAATGACGGTCG
AGGGTTTCTGTTTTTCCGATAGATTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_FFCX01000015.1\|WP_153309886.1\|17534_17693_+\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000015.1\|WP_061706041.1\|29356_31477_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|236333
NZ_FFCX01000015.1\|WP_002213018.1\|28940_29276_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_FFCX01000015.1\|WP_002219079.1\|35987_37442_-\|iron-sulfur-cluster-binding-protein	unknown	unknown	gnl\|CDD\|224062
NZ_FFCX01000015.1\|WP_002237168.1\|37438_38140_-\|lactate-utilization-protein-C	unknown	unknown	gnl\|CDD\|224473
NZ_FFCX01000015.1\|WP_002244173.1\|18742_19306_+\|TonB-dependent-receptor-plug-domain-containing-protein	unknown	unknown	gnl\|CDD\|227114
NZ_FFCX01000015.1\|WP_002225108.1\|17689_18469_-\|ferredoxin--NADP-reductase	unknown	unknown	gnl\|CDD\|99792
NZ_FFCX01000015.1\|WP_002216922.1\|25136_25901_-\|type-I-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235036
NZ_FFCX01000015.1\|WP_002216923.1\|26154_27201_+\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_FFCX01000015.1\|WP_002244172.1\|19480_21832_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|227114
NZ_FFCX01000015.1\|WP_002216908.1\|14076_15252_-\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|224981
NZ_FFCX01000015.1\|WP_061702817.1\|16066_17479_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NZ_FFCX01000015.1\|WP_002225109.1\|21975_23034_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_FFCX01000015.1\|WP_061702816.1\|23101_25117_-\|DNA-helicase-Rep	unknown	unknown	gnl\|CDD\|130146
NZ_FFCX01000015.1\|WP_002216935.1\|35319_35805_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
NZ_FFCX01000015.1\|WP_002213029.1\|33887_34556_+\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
NZ_FFCX01000015.1\|WP_002237167.1\|38136_38916_-\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|223325
NZ_FFCX01000015.1\|WP_002213027.1\|33691_33877_+\|DUF3460-family-protein	unknown	unknown	gnl\|CDD\|378768
NZ_FFCX01000015.1\|WP_061706042.1\|31571_33548_-\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_FFCX01000015.1\|WP_002235943.1\|34555_35272_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|224643

Protein	Function_ID	Function_description	E-value
NZ_FFCX01000015.1\|WP_061706041.1\|29356_31477_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|236333	PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_FFCX01000015.1\|WP_002213018.1\|28940_29276_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	8.00983e-40
NZ_FFCX01000015.1\|WP_002219079.1\|35987_37442_-\|iron-sulfur-cluster-binding-protein	gnl\|CDD\|224062	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion].	0
NZ_FFCX01000015.1\|WP_002237168.1\|37438_38140_-\|lactate-utilization-protein-C	gnl\|CDD\|224473	COG1556, COG1556, Uncharacterized conserved protein [Function unknown].	3.14972e-83
NZ_FFCX01000015.1\|WP_002244173.1\|18742_19306_+\|TonB-dependent-receptor-plug-domain-containing-protein	gnl\|CDD\|227114	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism].	1.14555e-75
NZ_FFCX01000015.1\|WP_002225108.1\|17689_18469_-\|ferredoxin--NADP-reductase	gnl\|CDD\|99792	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	7.9488e-110
NZ_FFCX01000015.1\|WP_002216922.1\|25136_25901_-\|type-I-3-dehydroquinate-dehydratase	gnl\|CDD\|235036	PRK02412, aroD, type I 3-dehydroquinate dehydratase.	7.89423e-131
NZ_FFCX01000015.1\|WP_002216923.1\|26154_27201_+\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_FFCX01000015.1\|WP_002244172.1\|19480_21832_+\|TonB-dependent-receptor	gnl\|CDD\|227114	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism].	1.12185e-125
NZ_FFCX01000015.1\|WP_002216908.1\|14076_15252_-\|nitronate-monooxygenase	gnl\|CDD\|224981	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only].	6.84815e-78
NZ_FFCX01000015.1\|WP_061702817.1\|16066_17479_+\|3'-5'-exonuclease	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	2.21382e-49
NZ_FFCX01000015.1\|WP_002225109.1\|21975_23034_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_FFCX01000015.1\|WP_061702816.1\|23101_25117_-\|DNA-helicase-Rep	gnl\|CDD\|130146	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_FFCX01000015.1\|WP_002216935.1\|35319_35805_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	8.4919e-90
NZ_FFCX01000015.1\|WP_002213029.1\|33887_34556_+\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	2.39475e-72
NZ_FFCX01000015.1\|WP_002237167.1\|38136_38916_-\|(Fe-S)-binding-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	6.92576e-52
NZ_FFCX01000015.1\|WP_002213027.1\|33691_33877_+\|DUF3460-family-protein	gnl\|CDD\|378768	pfam11943, DUF3460, Protein of unknown function (DUF3460). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.	2.92685e-21
NZ_FFCX01000015.1\|WP_061706042.1\|31571_33548_-\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_FFCX01000015.1\|WP_002235943.1\|34555_35272_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|224643	COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown].	6.58335e-66

>NZ_FFCX01000015.1|WP_002216923.1|26154_27201_+|recombinase-RecA
MSDDKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEIADEIDAKIRALNGIEMHITEGTQDETDGERPEE
>NZ_FFCX01000015.1|WP_002216922.1|25136_25901_-|type-I-3-dehydroquinate-dehydratase
MCSCLVVKNTVIGSGRTKIAVPLVARDAAELSAVLEQIKNMPFDIAEFRADFLECAGSIGEILHHTQTVRDALPDKPLLFTFRRHGEGGSFPCSDDYYFKLLDALIESRLPDIIDIELFSGETAVRCAVANAQKNGIAALLCNHEFHRTPPQEEIVCRLKQMEDCGADICKIAVMPQSAEDVLTLLSATLKAKELAAKPIVTMSMGQTGAVSRLAGQVFGSSITFGSGTQNSAPGQIGVSALRATLDCLENGAD
>NZ_FFCX01000015.1|WP_061702816.1|23101_25117_-|DNA-helicase-Rep
MMKLNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLPKPQTRGLTICTFHSLGMKILREEANHIGYKKNFSILDSTDSAKIIGELLGGTGKEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIRLPAVLLQQNSEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTGAEGMFTAVGDDDQSIYAWRGANMENLRKMQENYPQMKVIKLEQNYRSTARILKIANKVIENNPKLFTKKLWSKLGEGEPVKVVACQNEQHEADWVVSQIVKQKLIGGDKTQYADFAVLYRGKHQARIFEEALRGARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVTLGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFINSLLEEIDYENHLMQNEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLEGKDEEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHNDSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEPSRFIDEMPQEDLKILGRKGGEPIVSKEEGRRNLADIIGRLDNLKKSGAAD
>NZ_FFCX01000015.1|WP_002225109.1|21975_23034_+|DNA-polymerase-IV
MSSRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAGDVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLMARVSPQTEDAFRLIGIGVGHLVPKNQQQDLWA
>NZ_FFCX01000015.1|WP_002244172.1|19480_21832_+|TonB-dependent-receptor
MVYGIAEADAGDSSVLTLGGMYQKSREVPDFSGIILPCENQKTAPFSSTPACNRPLQLPRNTYLGEDWSRLSADKYNLFSGFKHVFDNGWQLNAEVSYTKNESDAKVGQFFLKNEYAAGLSGEDAVGFLTEKNEVIPFEPKDKALEKLKAYRDETAKEYRERKDDFVKNRFDNTAFEQYRSRRAAERKAGFDKCMSDPFALDFICQGSWGDPGVDADKAEFVDKALAKEGIFNNAAQRFPNSLYDSSFNRKATANRRYSYMPLRHTKDDRQWGIKLDLTGTYGLFGREHDFFVGYAYGDEKIRSEYLEIYERRYRVRPNTGATHGVYAGSCQEEPDGDLSSPLVRGHKEPDWQAYDEKGNRTVYAEECRNAKKIKTEPKLDAEGKQVYYYDEYSGSRTPVYVDVYELDEKGNKIQETNPDGTPAFTGFSGTVPVWKTVKVADDHVPALYNYAKYLNTNKTHSLTASTRFNVTGRLHLLGGLHYTRYETSQTKDMPVRYGQPASDFQTASSIRADQDHYTAKMQGHKLTPYAGITYDLTPQQSIYGSYTKIFKQQDNVDVSAKTVLPPLVGTNYEVGWKGAFLQGRLNASFALFYLEQKNRTVVDFGYVPGAGGKQGSFQTVAKPIGKVVSRGAEFELSGELNEDWKVFAGYTYNKSRYKNAAEVNAERLAKNSSADPYNFSNFTPVHIFRFGTSFHIPNTGLTVGGGVSAQSGTSSLYNIRQGGYGLIDGFVRYELGKHAKLSLIGTNLNGRTYFENNYNRTRGANNFYGEPRTVSMKLDWQF
>NZ_FFCX01000015.1|WP_002244173.1|18742_19306_+|TonB-dependent-receptor-plug-domain-containing-protein
MNQNHFSLKILTVMLLSAYGGSFADGVVPVSDGNTVSLDTVNVRGSHALLGKTEKTRSYTIDRMSTATGMRIAGKDTPQSVSVITRSRLDDKAVHTLEEAMKNTTGVNVVRDSGLQTRFLSRGFYIDQIGEDGMTVNVAGRSGYTAKIDVSPSTDLAVYDHIEVVRGATGLTQSNSEPGGTVNLIRK
>NZ_FFCX01000015.1|WP_002225108.1|17689_18469_-|ferredoxin--NADP-reductase
MAASPEAKFTEEKILWVKHHTPKLITFAISRPESYRFKAGQFSRLGFYEGEGFIWRAYSIVSAEYADTLEYFAVLIQDGPMSARFAKMQQGNTILLDKNATGFLLPERFPDGKDLVMLCTGSGIAPFLSILEQPEIRQRFDTVNLIHSVSFPEELIFNDRLAALTEHPLVGEYGHSFRFVPVTTRAANPSGLSGKRIPELLKNNSIEQALHTKFTPESTRFMICGNPEMVKDTFQTLLDMGYAMHRNRIPGQIMMENGF
>NZ_FFCX01000015.1|WP_153309886.1|17534_17693_+|hypothetical-protein
MPNRFVPVCCRLQVMYPKMPSEFFQTAFLPTRFSCRVGLPVHPKASDKQGGF
>NZ_FFCX01000015.1|WP_061702817.1|16066_17479_+|3'-5'-exonuclease
MLFEFKENKMIVASRWPLLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFVAGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPALCSVQLSRCLYPQFYKHSLDSIIERLGIVVEDRHRAMADVSALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPDGMGVLACFDGGGKVNYIGTFERVYSEVSALLDSGKAPFDWCNTEEVRFFPALGSLHAYKIKAELVGRYHSGCYVSAKNLLKTFTTVRFEKGSDGMLNAKTAALKNGVTDNPPTGLFANKKAARRALSSWAETYGLCPASAGILPDGYAEDEPCPVYVSGRCDKACGRSDEQVLAFAHKLPVLDWGKMHEVEITETDPLTGEKVVLHGMGGALEMDDGLWYFDKDLPDAFKAKFKTDRKNIKEIG
>NZ_FFCX01000015.1|WP_002216908.1|14076_15252_-|nitronate-monooxygenase
MQNIFDPLVIRGKSLTPIVQGGMGVGVSASGLSSAVARENGIGTIASVDLRHLHEDLLAESQINPSEEKYTSLNCTALDREIQKAKSASEGKGLIAVNVMKAVKDHAAYVRQACESGADAVVMGAGLPLDLPEMTEGYHKDVALLPILSESRGINIVLKRWMKKGILPDAIVVEHPAHAAGHLGASTVEGVNDAKFDFKRVIEETFEVFKSLGLESEKIPLILAGGMANFEKVKTALKNWGASAVQIGTAFAVTEEGDAHLNFKKTLAGAETEKVVEFMSVAGLPARGVRTKFLDSYIKRESKLQTNAKADPRRCTQGLNCLTSCGLRDGLSKAGQFCIDIQLAAAFRGEVDKGLFFRGKDPLPFGNAIRTVRETIQYLLTGSEPVATLGR
>NZ_FFCX01000015.1|WP_002213018.1|28940_29276_-|YbaB/EbfC-family-nucleoid-associated-protein
MFGKAGLGGLMKQAQQMQENMKKAQAKLAETEIEGEAGNGLVKITMTCAHEVRKIDISPDLIQEAADDKEMLEDLILAALKSARDKAEETANKTMGAFTQGLPPGVGDFFR
>NZ_FFCX01000015.1|WP_061706041.1|29356_31477_-|DNA-polymerase-III-subunit-gamma/tau
MAYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKITYAPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQHLALIQAVPNALAHDDPDSDILHRLAQTISGEQIQLYYQIAVHGKRDLGLAPDEYAGFMMTLLRMLAFAPLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPHPEAETTQTPVQTASAAAMPSEGKTAEPVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETSPDNQVSKNKAADNETETSLSEVPSENPIQATPNDEAVETEAFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPDWEHAAPADAEEENNADEGSNDENNTPSAPPPEFSTENWAAIVRHFARKLGAAQMPAQHSAWTEYHPDTGLMVLAMTAEARATADKKRLDKIRDTLAQAYGLQLTLQTQDWQDEAGRETPAMQDKRVQAEDRQKAQALLEADPAAQKILQAFGAQWQPESLELAANRP
>NZ_FFCX01000015.1|WP_061706042.1|31571_33548_-|DNA-mismatch-repair-endonuclease-MutL
MSRIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIEVELAGGGIRLIRVSDNGGGIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQNDSSHATQVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAHPHIAFSLKRDGKQVFKLPAQSLHERIAAIVGEDFQTASLGIDSGNGALRLYGAIAKPTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNVHPTKTEIRFRDSQQVHQLVFHTLNKALADTRANLTESVGNAGEVLHDITGVVSTPMPSENDSENLFDSVSNYPTGNKSDTHNAFGSSGKTAPMPYQSAYAPQQRSLSLRESRAAMNTYAELYKKTDDIDLELSRFEQARFGNMPSETPAPQTDTPLSDGIPSQSELPPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQRLLIPVTFAASHEECAALADYAETLAGFGLELSDMGGNTLAVRAVPAMLGKADVVSLAKDVLNELAQVGSSQTIEEHENHILATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLRGQ
>NZ_FFCX01000015.1|WP_002213027.1|33691_33877_+|DUF3460-family-protein
MYHYQSDATQFLNRLIEEKPELEQQRLENRGLLWDVELNPEEQENFEAAKVAKKPYTYYQD
>NZ_FFCX01000015.1|WP_002213029.1|33887_34556_+|O-methyltransferase
MTTHLSNVAPDLQNYLNSIGEPEHPVLTRLREKTEHHRMGKMAIAREQAAVLVWLAKLIRAEKYLEVGVFTGYSSTALALALPEHGRITACDINVTFTDTARQVWNEAGVAHKISLHLQPALLTLDDLIVQGEAGSYDLALIDADKPPTPQYFERCLKLVRQGGIIAIDNILLNGRVMREAASDAPPSVGILKDFNQNLPNDPRIVPITLPVGDGLTLLLKK
>NZ_FFCX01000015.1|WP_002235943.1|34555_35272_+|tetratricopeptide-repeat-protein
MKTKLPLFIIWLSVSAACSSPVSRNIQDMRLEPQAEAGSSDAIPYPVPTLQDRLDYLEGTLVRLSNEVETLNGKVKALEHAKTHPSSRAYVQKLDDRKLKEHYLNTEGGSASAHTVETAQNLYNQALKHYKSGRFSAAASLLKGADGGDGGSIAQRSMYLLLQSRARMGNCESVIEIGGRYANRFKDSPTAPEAMFKIGECQYRLQQKDIARATWLSLIQTYPGSPAAKRAAAAIRKR
>NZ_FFCX01000015.1|WP_002216935.1|35319_35805_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MIQIGIIMGSNSDWPVMRQAAQFLEEFGVEYEARVVSAHRTPDLMFQYAETARARGIKAIIAGAGGAAHLPGMVAAKTTVPVLGVPVPSKYLRGEDSLLSIVQMPKGVPVATFAIGEAGAANAALFAVSMLANENPELAQKLADFRAKQEQTVLNMELEQI
>NZ_FFCX01000015.1|WP_002219079.1|35987_37442_-|iron-sulfur-cluster-binding-protein
MTTQTIKFHMKPETFKQNAAISLQDKPLRKSLRTAMDMLMTKRKAVLTDEEELQSLRDLCEHVRQRSLSKLPALLEQLEENLTKLGVKVHWAETPAEACEIIHDIITAKNGKLMVKGKSMVSEEIELNHYLEAKGIKAVESDLGEFIVQMAGEKPTHIVMPAIHKTKEQVSELFHQNLGTPLTDDVDQLTGFARKALRDIYSTADVGLSGVNFAVAETGTLCLVENEGNGRLSTTVPPVHIAITGIEKVVAKLSDIPPLYSLLPRSAIGQNITTYFNMITGPRRSEELDGPQEMHLVLLDNGRSQAYAEDQMRRTLQCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVEVCPVRIPITEQMQRLRVEAQRSPTETVPHPIRGQGASHTFGEQMAWRTFNGIFSGSKTYRAFGWAATKFRNLTPRKQLGWTQNRVPMKPAKKTLHELMAEKMRQKEQA
>NZ_FFCX01000015.1|WP_002237168.1|37438_38140_-|lactate-utilization-protein-C
MSARENILAKLKKADALPMEEPAVFDYYREMGVSWGSEVERLKHWAAAMRAVKTEIYWVTKSNWMQVFREAAEGKGLKNILLPLATEHGQIARAALAGSNIEPIVFEREIDTWKTEFFTNINAGFSGAQCGIARTGTLMLFSSPEEPRTLSLVPPVHFCLFDTSKMYNEFHNAVEGEKLVENGMPTNVFLISGPSKTADIQLTLAYGAHGPRDLVILAILPDHISPTDLEENA
>NZ_FFCX01000015.1|WP_002237167.1|38136_38916_-|(Fe-S)-binding-protein
MSATIPPKIIRYDSNPTDVYFFGTCVLDLFMPEAGMDAITLIEQQGIRVHFPMAQSCCGQPAYSSGHPTEAFDVAKAQLDLFPENWPIVVPSGSCGGMMKHHWPTLFKGSEYEERAVDCAKRIIEFTHFLLAIGFKPEDKGEPLKVAVHTSCAARREMNVHLSGWQLIDGMENVERIVHDHESECCGFGGTFSVKQADISGAMVTDKVAALKETGATEIISADCGCMMNIGGKIAKDEPNMPRPKHIASFLLERTGGKA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

8. NZ_FFCX01000003

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1774 : 32420

Mannheimia_phage(46.67%)

plate,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002225237.1\|1774_3184_+\|tail	tail sheath protein	B7SDP8	Haemophilus_phage	2.5e-124	52.8
WP_002222505.1\|3248_3626_+	hypothetical protein	A0A0M3LRV6	Mannheimia_phage	5.3e-29	50.8
WP_002217234.1\|3629_3995_+	hypothetical protein	NA	NA	NA	NA
WP_014580554.1\|3969_4203_+	hypothetical protein	NA	NA	NA	NA
WP_002222503.1\|4246_4849_-	hypothetical protein	NA	NA	NA	NA
WP_010980892.1\|5018_7175_+	hypothetical protein	A0A0M3LPB6	Mannheimia_phage	3.2e-38	29.8
WP_002225234.1\|7174_8506_+	phage morphogeneis protein	A0A0M3LQ21	Mannheimia_phage	1.2e-64	35.5
WP_061702802.1\|8495_9641_+\|tail	phage tail protein	F6MIL3	Haemophilus_phage	8.1e-113	57.0
WP_002217230.1\|9637_10306_+\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	1.8e-59	52.1
WP_002225232.1\|10406_10754_+	hypothetical protein	A0A0M3LQK5	Mannheimia_phage	4.7e-32	59.5
WP_002244124.1\|10767_11211_+\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	3.1e-36	55.3
WP_061701625.1\|11210_11822_+\|plate	baseplate J/gp47 family protein	F6MIL6	Haemophilus_phage	2.8e-56	56.4
WP_002222498.1\|11818_12379_+	YmfQ family protein	F6MIL7	Haemophilus_phage	7.9e-29	38.3
WP_002225231.1\|12389_14363_+\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	4.0e-136	56.9
WP_002225230.1\|15388_15691_-	BrnA antitoxin family protein	NA	NA	NA	NA
WP_002213585.1\|15662_15950_-	hypothetical protein	NA	NA	NA	NA
WP_002225229.1\|16029_16635_+	hypothetical protein	Q7Y5S1	Haemophilus_phage	2.0e-14	42.3
WP_002225228.1\|16613_16910_+	hypothetical protein	A0A0M3LNN9	Mannheimia_phage	1.2e-23	60.2
WP_002213582.1\|16906_17116_+	hypothetical protein	NA	NA	NA	NA
WP_010980895.1\|18574_18772_-	hypothetical protein	NA	NA	NA	NA
WP_002217218.1\|18811_19459_-	DUF799 domain-containing protein	NA	NA	NA	NA
WP_002213579.1\|19455_19827_-	DUF4810 domain-containing protein	NA	NA	NA	NA
WP_002217215.1\|19833_20505_-	membrane protein	NA	NA	NA	NA
WP_002225227.1\|20669_21389_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_002225226.1\|21471_22785_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_002225224.1\|23182_24055_-	presqualene diphosphate synthase HpnD	NA	NA	NA	NA
WP_002244129.1\|24225_26088_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.8e-107	42.2
WP_002244130.1\|26164_26821_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_002244131.1\|26857_27619_+	DUF2314 domain-containing protein	NA	NA	NA	NA
WP_002217209.1\|27673_28015_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_002225220.1\|28437_28992_-	amino acid permease	NA	NA	NA	NA
WP_002222472.1\|29204_29402_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_002217207.1\|29469_29871_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_002222471.1\|30082_31042_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_079760353.1\|31139_32420_+\|tRNA	tRNA lysidine(34) synthetase TilS	A0A0N7G7K4	Chrysochromulina_ericina_virus	1.1e-06	24.7

DBSCAN-SWA_2

75473 : 83640

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222438.1\|75473_76421_-	paraslipin	M1PGF9	Moumouvirus	7.9e-21	30.2
WP_002222437.1\|76435_76843_-	NfeD family protein	NA	NA	NA	NA
WP_002224520.1\|76923_77583_+	uracil-DNA glycosylase	A0A0A7D988	Equid_alphaherpesvirus	1.7e-54	48.4
WP_002213519.1\|77685_78333_+	SAM-dependent DNA methyltransferase	A0A2H4PQP4	Staphylococcus_phage	2.2e-06	36.8
WP_118829631.1\|78194_78602_+	N-6 DNA methylase	A0A2H4PQP4	Staphylococcus_phage	1.0e-09	47.7
WP_002232471.1\|78405_78879_+	N-6 DNA methylase	A0A2H4PQP4	Staphylococcus_phage	4.3e-20	39.7
WP_002236995.1\|79226_80171_+	hypothetical protein	NA	NA	NA	NA
WP_079254874.1\|80312_80447_+	DUF45 domain-containing protein	NA	NA	NA	NA
WP_002225204.1\|80736_81252_-	hypothetical protein	NA	NA	NA	NA
WP_002225203.1\|81440_81692_-	hypothetical protein	NA	NA	NA	NA
WP_002225202.1\|81717_83640_-	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	7.8e-68	31.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

9. NZ_FFCX01000016

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_FFCX01000016_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_FFCX01000016_1

23084-23189

Orphan

Consensus_repeat	Method
CCGTCATTCCCGCCACTTTCCGTCATTCCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_FFCX01000016_1

>merge|NZ_FFCX01000016|1|23084-23189|CRISPRCasFinder
CCGTCATTCCCGCCACTTTCCGTCATTCCCGCAAAAGCGGGAATCTAGGACGCAGGGTTAAGAAAACCTACATCCCGTCATTCCCGCCACTTTCCGTCATTCCCGC

>NZ_FFCX01000016|1|1|23084-23189|CRISPRCasFinder
CCGTCATTCCCGCCACTTTCCGTCATTCCCGC	AAAAGCGGGAATCTAGGACGCAGGGTTAAGAAAACCTACATC
CCGTCATTCCCGCCACTTTCCGTCATTCCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_FFCX01000016.1\|WP_061706009.1\|19490_20351_-\|sulfate-ABC-transporter-permease-subunit-CysW	unknown	unknown	gnl\|CDD\|226665
NZ_FFCX01000016.1\|WP_010980865.1\|26613_27228_+\|type-IV-pilus-modification-protein-PilV	unknown	unknown	gnl\|CDD\|227302
NZ_FFCX01000016.1\|WP_002225351.1\|33598_34378_+\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999
NZ_FFCX01000016.1\|WP_010980866.1\|28727_29216_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|288394
NZ_FFCX01000016.1\|WP_002225372.1\|15520_16690_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_FFCX01000016.1\|WP_061706012.1\|32148_33336_+\|succinyldiaminopimelate-transaminase	unknown	unknown	gnl\|CDD\|236393
NZ_FFCX01000016.1\|WP_002222667.1\|12506_13352_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731
NZ_FFCX01000016.1\|WP_061706011.1\|27224_28166_+\|PilW-family-protein	unknown	unknown	gnl\|CDD\|227301
NZ_FFCX01000016.1\|WP_002222651.1\|31619_32072_+\|dUTP-diphosphatase	unknown	unknown	gnl\|CDD\|234802
NZ_FFCX01000016.1\|WP_002219458.1\|11915_12497_+\|outer-membrane-lipoprotein-LolB	unknown	unknown	gnl\|CDD\|225562
NZ_FFCX01000016.1\|WP_002225369.1\|18420_19494_-\|sulfate/molybdate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224043
NZ_FFCX01000016.1\|WP_002225371.1\|16837_18364_+\|threonine-ammonia-lyase,-biosynthetic	unknown	unknown	gnl\|CDD\|236417
NZ_FFCX01000016.1\|WP_002220670.1\|23461_24049_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NZ_FFCX01000016.1\|WP_002213870.1\|13773_14757_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_FFCX01000016.1\|WP_002244085.1\|28144_28738_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227070
NZ_FFCX01000016.1\|WP_002213865.1\|14823_15396_+\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	unknown	unknown	gnl\|CDD\|235534
NZ_FFCX01000016.1\|WP_002225362.1\|24212_25619_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NZ_FFCX01000016.1\|WP_002230433.1\|25927_26596_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227305
NZ_FFCX01000016.1\|WP_002225363.1\|21769_22102_+\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000016.1\|WP_002213852.1\|22433_22943_+\|isoprenylcysteine-carboxyl-methyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224669

Protein	Function_ID	Function_description	E-value
NZ_FFCX01000016.1\|WP_061706009.1\|19490_20351_-\|sulfate-ABC-transporter-permease-subunit-CysW	gnl\|CDD\|226665	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism].	3.51517e-154
NZ_FFCX01000016.1\|WP_010980865.1\|26613_27228_+\|type-IV-pilus-modification-protein-PilV	gnl\|CDD\|227302	COG4967, PilV, Tfp pilus assembly protein PilV [Cell motility and secretion / Intracellular trafficking and secretion].	1.09177e-51
NZ_FFCX01000016.1\|WP_002225351.1\|33598_34378_+\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	3.48799e-138
NZ_FFCX01000016.1\|WP_010980866.1\|28727_29216_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|288394	pfam11530, Pilin_PilX, Minor type IV pilin, PilX. PilX is a protein from Neisseria meningitidis which is crucial for the formation of bacterial aggregates and adhesion to human cells. The structure of PilX is similar to all pilins as it has the common alpha/beta roll fold. PilX subunits have surface-exposed motifs which are thought to stabilize bacterial aggregates against pilus retraction. It also illustrates how a minor pilus component can modulate the virulence properties of pili which have a simple composition and structure.	5.61683e-87
NZ_FFCX01000016.1\|WP_002225372.1\|15520_16690_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	8.96311e-131
NZ_FFCX01000016.1\|WP_061706012.1\|32148_33336_+\|succinyldiaminopimelate-transaminase	gnl\|CDD\|236393	PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional.	0
NZ_FFCX01000016.1\|WP_002222667.1\|12506_13352_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	1.6675e-151
NZ_FFCX01000016.1\|WP_061706011.1\|27224_28166_+\|PilW-family-protein	gnl\|CDD\|227301	COG4966, PilW, Tfp pilus assembly protein PilW [Cell motility and secretion / Intracellular trafficking and secretion].	4.81468e-111
NZ_FFCX01000016.1\|WP_002222651.1\|31619_32072_+\|dUTP-diphosphatase	gnl\|CDD\|234802	PRK00601, dut, dUTP diphosphatase.	4.34516e-93
NZ_FFCX01000016.1\|WP_002219458.1\|11915_12497_+\|outer-membrane-lipoprotein-LolB	gnl\|CDD\|225562	COG3017, LolB, Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	9.31305e-68
NZ_FFCX01000016.1\|WP_002225362.1\|24212_25619_+\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_FFCX01000016.1\|WP_002225371.1\|16837_18364_+\|threonine-ammonia-lyase,-biosynthetic	gnl\|CDD\|236417	PRK09224, PRK09224, threonine ammonia-lyase IlvA.	0
NZ_FFCX01000016.1\|WP_002220670.1\|23461_24049_-\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	1.6688e-99
NZ_FFCX01000016.1\|WP_002213870.1\|13773_14757_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_FFCX01000016.1\|WP_002213865.1\|14823_15396_+\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	1.17209e-70
NZ_FFCX01000016.1\|WP_002225369.1\|18420_19494_-\|sulfate/molybdate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224043	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism].	2.35207e-168
NZ_FFCX01000016.1\|WP_002230433.1\|25927_26596_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227305	COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion].	1.19163e-62
NZ_FFCX01000016.1\|WP_002244085.1\|28144_28738_+\|pilus-assembly-protein	gnl\|CDD\|227070	COG4726, PilX, Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion].	4.91467e-74
NZ_FFCX01000016.1\|WP_002213852.1\|22433_22943_+\|isoprenylcysteine-carboxyl-methyltransferase-family-protein	gnl\|CDD\|224669	COG1755, COG1755, Uncharacterized protein conserved in bacteria [Function unknown].	4.4872e-74

>NZ_FFCX01000016.1|WP_002213852.1|22433_22943_+|isoprenylcysteine-carboxyl-methyltransferase-family-protein
MTMILSILSLFFIIRLLFLAVSIKHEKALIAKGAKQYGKTNSTLLAAVHTLYYLACFVWVWLSDTAFNGISLIGTLTVMASFVILSLIIKQLGEIWTVKIYILPNHQINRSWLFKTFRHPNYFLNIIPELIGIALLCQAWYVLLIGLPIYLLVLFKRIRQEEQAMATLF
>NZ_FFCX01000016.1|WP_002225363.1|21769_22102_+|hypothetical-protein
MQILSFQPDIAERMLEGTEGESVNENAQFVRTDNGYWIAWHEGVAALLAPDMPPGIPCFWVEGAESLEELCVMVERGEFDEVEEFDGDDDEWLETAQGCGHHGDACACGH
>NZ_FFCX01000016.1|WP_061706009.1|19490_20351_-|sulfate-ABC-transporter-permease-subunit-CysW
MKPYSANPNLTEPRRLRVLLIAAALGFLLLMLVVPLVAVFYEALKGGWDLYLKSLNDPEAWSAIKLTLITALIVVPVNAVLGVAMAWLLTRFDFRGKQLLTTLLDLPFSVSPVVAGLMFVLLFGAHTALGDWLEAQGIQIIFAIPGIVLATLFVTFPFVAREIIPLMQAQGDSEEQAALILGASGWQMFWRVTLPNIKWALLYGIILTNARAMGEFGAVSVVSGHIRGETNTVPLLVEIFYNEYNFTGAFALSGVLALLALATLAVQNIITKLQDKKLAAAERNAI
>NZ_FFCX01000016.1|WP_002225369.1|18420_19494_-|sulfate/molybdate-ABC-transporter-ATP-binding-protein
MSITIQNLNKHFGNFHALKNINLNVPTGKLVSLLGPSGCGKTTLLRIIAGLENADGGNILFDGQDVTAKHVRERKVGFVFQHYALFRHMNVFDNVAFGLTVLPKSERPSKGQIRAKVEELLKLVQLSHLAKSYPHQLSGGQRQRIALARALAVEPKLLLLDEPFGALDAKVRKELRTWLRDIHHNLGVTSILVTHDQEEALEVSDEIVVMNHGKIEQTGSAEAIYRKPENAFVTEFLGETDAFEGRIEKGFWHYNGFAWKLDAQYKWQEQTATGYIRPHEWQIAAEHETPMICAEIEKIHAVGALTHILVKHDKQDVHITLAGSDAARYPIAEGKELKLIPKQVYVFSQNELIEYSI
>NZ_FFCX01000016.1|WP_002225371.1|16837_18364_+|threonine-ammonia-lyase,-biosynthetic
MNTPLPYSDYLIRILTASVYDVAVETPLEPARSLSVRLKNNILLKREDLQPVFSFKIRGAYNKMSKLPKDALACGVIAASAGNHAQGVALSAQRLGCRAVIVMPETTPKIKVDAVKSHGGEVVLRGVSYNDAYDYAMELAEKEGLTYIAPFDDPDVIAGQGTVGMEIVSQHPDPIRAVFVPIGGGGLAAGVAAFIKQVRPEIKVIGVQTNDSCCMKQSVEAGEIVHLKDVGLFSDGTAVKVVGNETFRLCKELLDEIITVDTDAVCGAVKDIFDDTRSITEPAGALALAGLKAYIAREGAENQTLIAVTSGANMNFHRLRHVSERSELGEGNEGIFAVTIPEERGSFLKFVNILGNRNITEFNYRYGDDEKAHIFVGLQAAGPQDLAVIGSRLDEAGLPNVDLTNNEIAKIHIRYMVGGRTDKVENERLVSFEFPERPGALARFLNHMQGGWNITLFHYRNHGADYGRILVGIDVPPHDAAAFDGFLESLGYSYHEETQNAAYKLFLA
>NZ_FFCX01000016.1|WP_002225372.1|15520_16690_-|D-alanyl-D-alanine-carboxypeptidase
MTAHKILPVLLSIILGVSHATAASPAPNRPTVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKMAEQILETIQPIPAPVKKGQILGKIKIRQNGYTIAEKEIVALENVKKRSRWQRLWACLTGQ
>NZ_FFCX01000016.1|WP_002213865.1|14823_15396_+|50S-ribosomal-protein-L25/general-stress-protein-Ctc
MTYEIQASVREAQGTGASRRLRREGQIPGILYGEGQEPVAIAVDHKTVFYALEKESFHTALIKLSLNGETKDVIVRDFQMHPFRREVQHIDFQAVKADQLVRIRVPLHIVNAENSQAVKLQGGRVSLLNTSVEVVALPANIPAFLDLDCAEVVAGDILHLSDIKLPEGVESVSLKRNENLAVATVTGKKR
>NZ_FFCX01000016.1|WP_002213870.1|13773_14757_+|ribose-phosphate-pyrophosphokinase
MAAYDSLMVFTGNANPELAQRVVRHLDISLGNASVSKFSDGEVAVELLENVRGRDVFILQPTCAPTNDNLMEILTMADALKRASAGRITTAIPYFGYARQDRRPRSVRVPISAKLVANMLYSAGIDRVLTVDLHADQIQGFFDIPVDNIYATPILLNDIKQQRIENLTVVSPDIGGVVRARAVAKSLNADLAIIDKRRPKANVAEVMNIIGDIQGRTCLIVDDMIDTANTLCKAAVALKERGAERVLAYASHAVFSGEAVSRIASSEIDQVVVTDTIPLSEAAKNCDRIRQVTIAGLLAETVRRISNEESVSYLFNEEVMTGSMLLP
>NZ_FFCX01000016.1|WP_002222667.1|12506_13352_+|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MNIADGRQAFSAPAKLNLDLRITGRREDGYHNIESIFCLIDLQDTVYLKPRDDGKIILHNPVDGMPQEVDLSYRAASLLQKYARNPAGVEIWLDKKIPTGAGLGGGSSDAATVLLVLNRWWQCGLTQRQLIDSGAALGADVPFFIFGKNAFARGIGDRLDEMDIPKQWYVIVKPPVHVSTAKIFTHESLTRNSASSIMPTFQNLQPFRNDMQAVVFKEYPEVWKAYSELSRYGFALMTGSGACVFTACQDRNSAYNIYRQVSDLYEAYLAEGLSKHPLLSV
>NZ_FFCX01000016.1|WP_002219458.1|11915_12497_+|outer-membrane-lipoprotein-LolB
MKHTVSASVILLLTACAQLPQNNENLWQPSEHISSFAAEGRLAVKAEGKGSYANFDWTYQPPVETININTPLGSTLGQLCQDRDGALAVDGKGNVYQAESAEELSRQLVGFKLPIQYLHIWADGRRVAGAPYRILPDGILEQYGWTVGRTADSGGQVRTLQLNNGNLNIRLVFTEIGMPSETETPERCAARTR
>NZ_FFCX01000016.1|WP_002220670.1|23461_24049_-|superoxide-dismutase
MEHKLPQLPYELDALSPHLSKETLEFHYGKHHQTYITNLNNQIKGTEFENLPLEEIVKKSSGGVFNNAAQTWNHTFYWLGFTSKGQGKPAGELAAAIDAKWGSFEKFQEAFNACAAGTFGSGWAWLVKTPAGGLDLVSTSNAATPLTTENTPLLTCDVWEHAYYIDYRNSRPNYLKGFWEIVNWDEVAKRFAALS
>NZ_FFCX01000016.1|WP_002225362.1|24212_25619_+|replicative-DNA-helicase
MNDYAAMPSEDREVGALSLPPHSMEAEQSVLGGLMLENPAWDRIADVVSGEDFYRHEHRLIFRSIAKLINESRPADVITVQEDLQRNEELEAAGGFEYLITLAQNTPSAANIRRYAEIVRERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIAESTAKSKQGFLEMPDLLKEVVQRIDMLYSRDNPDEVTGVPTGFIDLDKKTSGLQPGDLIIVAGRPSMGKTAFSINIAEHVAVEGRLPVAVFSMEMGGAQLVMRMLGSVGRLDQSVLKTGRLEDEHWGRLNEAVVKLSDAPVYIDETPGLTALELRARARRLARQFNNKLGLIVIDYLQLMAGSGRSDNRASELGEISRSLKALAKELQVPIIALSQLSRTVESRTDKRPMMSDLRESGAIEQDADLIMFMYRDEYYNQDSPMKGLAECIIGKHRNGPVGKIFLTWTGQFTKFDNAAYIPEEAKIED
>NZ_FFCX01000016.1|WP_002230433.1|25927_26596_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPNNKCDSGKKGQGMLAFGDKNGNKGYDNDTEDVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTTDRVVWTFNQNGTFGYTKDQHLTKQSSFFYSDGYIQIVLTDAKAVSADEKKFRSAVVLINSSGRVEVCPRGDRRTMCQYK
>NZ_FFCX01000016.1|WP_010980865.1|26613_27228_+|type-IV-pilus-modification-protein-PilV
MNMKNNDCFRLKDSQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKNYNLYMGNHTLSAVDGDFAIDAMKTKGQLAEAQLKRFSYELKNALPDAAAIHYAVCKDSSGNAPTLSGNAFSSNCDNKANGDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE
>NZ_FFCX01000016.1|WP_061706011.1|27224_28166_+|PilW-family-protein
MRRKMLNVPKGSYDGMKGFTIIEFLVAGLLSMIVLMAVGSSYFTSRKLNDAANERLAAQQDLRSAATLIVRDARMAGGFGCFNMSEHPATDVIPDTTQQNSPFSLKRNGIDKLIPIAESSNINYQNFFQVGSALIFQYGIDDVNASTATTVVSSCAAISKPGKQIPTLEDAKKELKIPDQDKEQNGNIARQRHVVNAYAVGRIADEEGLFRFQLDDKGKWGNPQLLVKKVRHMKVRYIYVSGCPEDDDAGKEETFKYTDKFDSAQNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL
>NZ_FFCX01000016.1|WP_002244085.1|28144_28738_+|pilus-assembly-protein
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDTDSKVTFSENCGKGLCAAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCPANSTDLCIDKKGMEYKKGTRSVSKMPRYIIEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE
>NZ_FFCX01000016.1|WP_010980866.1|28727_29216_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MMSNKMEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIENKLEIFVSGYKMNPKIAKKYSVSVKFVDKEKSRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASAQAHLETLSSDVGCEAFSNRKK
>NZ_FFCX01000016.1|WP_002222651.1|31619_32072_+|dUTP-diphosphatase
MNIEVEMKVLDERMADFIPAYATEGSAGLDLRACLDEEVVLQPGETFLVPTGLAIYLANPAYAAVLLPRSGLGHKHGIVLGNLVGLIDSDYQGELKVSLWNRSSEPFTVKPFERIAQMVIVPIVQARFKRVEEFVGSSRGEGGFGSTGLH
>NZ_FFCX01000016.1|WP_061706012.1|32148_33336_+|succinyldiaminopimelate-transaminase
MNTLLKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTLNSDTEILPVLGSREALFSFVQTVLNPVSDGLKPVIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWNDEQHVIDNRRLYQEKFEWVIPILQQVFDVKLPDASFYIWLKVPDGDDLALARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAETIVSLYR
>NZ_FFCX01000016.1|WP_002225351.1|33598_34378_+|peroxide-stress-protein-YaaA
MFFVLSPAKNLNEKDPAPVSEFTQPDLLAESDILMQQLRELAPQQIAELMHVSDKIALLNAQRNAEWNTPFTPENAKQAVFMFNGDVYEGMDANTLDIGQIRYLQNHVRLLSGLYGLLRPLDLIQPYRLEMGTAFANLRGKNLYEFWGDIITNLLNDTLAQAGSNTLVNLASQEYFKSVNTKKLRARLITPIFKDEKNGKYKIISFYAKRARGLMVRYAAEHHITDPEMLKNFNYEGYAFNDAASNESEWVFMRSEQIK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_FFCX01000016_1	1.1\|23116\|42\|NZ_FFCX01000016\|CRISPRCasFinder	23116-23157	42	NZ_FFCX01000015.1	45936-45977	0	1.0
NZ_FFCX01000016_1	1.1\|23116\|42\|NZ_FFCX01000016\|CRISPRCasFinder	23116-23157	42	NZ_FFCX01000015.1	45420-45461	1	0.976

1. spacer 1.1|23116|42|NZ_FFCX01000016|CRISPRCasFinder matches to position: 45936-45977, mismatch: 0, identity: 1.0

aaaagcgggaatctaggacgcagggttaagaaaacctacatc	CRISPR spacer
aaaagcgggaatctaggacgcagggttaagaaaacctacatc	Protospacer
******************************************

2. spacer 1.1|23116|42|NZ_FFCX01000016|CRISPRCasFinder matches to position: 45420-45461, mismatch: 1, identity: 0.976

aaaagcgggaatctaggacgcagggttaagaaaacctacatc	CRISPR spacer
aaaagcgggaatctaggacgcagggttaagaaaacctgcatc	Protospacer
*************************************.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

10. NZ_FFCX01000024

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

11. NZ_FFCX01000089

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

12. NZ_FFCX01000048

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

13. NZ_FFCX01000061

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

14. NZ_FFCX01000007

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CRISPR-Cas detection and classification

Crispr_ID: NZ_FFCX01000007_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_FFCX01000007_1

28223-28321

Orphan

I-E

Consensus_repeat	Method
GGATTCCCGCCTGCGCGGGAATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_FFCX01000007_1

>merge|NZ_FFCX01000007|1|28223-28321|CRISPRCasFinder
GGATTCCCGCCTGCGCGGGAATGACGATTTGGAAATTACCCGAAACCCAAAAACAACTGAAACCGAACAGACCGGATTCCCGCCTGCGCGGAAATGACG

>NZ_FFCX01000007|1|1|28223-28321|CRISPRCasFinder
GGATTCCCGCCTGCGCGGGAATGACG	ATTTGGAAATTACCCGAAACCCAAAAACAACTGAAACCGAACAGACC
GGATTCCCGCCTGCGCGGAAATGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_FFCX01000007.1\|WP_002243954.1\|19876_20686_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_FFCX01000007.1\|WP_002225965.1\|22819_23812_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|182909
NZ_FFCX01000007.1\|WP_002226919.1\|35603_36227_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_FFCX01000007.1\|WP_002218608.1\|19489_19867_+\|outer-membrane-protein-assembly-factor-BamE	unknown	unknown	gnl\|CDD\|225465
NZ_FFCX01000007.1\|WP_002225964.1\|24305_27065_+\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|236766
NZ_FFCX01000007.1\|WP_002218609.1\|18836_19271_-\|ferric-iron-uptake-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236527
NZ_FFCX01000007.1\|WP_017629009.1\|23889_24183_-\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000007.1\|WP_025461687.1\|21346_21592_-\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000007.1\|WP_002215509.1\|29485_30913_+\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NZ_FFCX01000007.1\|WP_002216282.1\|21599_22754_-\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|223834
NZ_FFCX01000007.1\|WP_002239446.1\|39886_40684_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_FFCX01000007.1\|WP_010980756.1\|31238_33134_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_FFCX01000007.1\|WP_002216270.1\|38524_39082_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_FFCX01000007.1\|WP_002221868.1\|34731_35505_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293
NZ_FFCX01000007.1\|WP_002243955.1\|18041_18767_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|225235
NZ_FFCX01000007.1\|WP_002218592.1\|39137_39884_+\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|376506
NZ_FFCX01000007.1\|WP_002226918.1\|37217_38345_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NZ_FFCX01000007.1\|WP_002221872.1\|28336_29326_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_FFCX01000007.1\|WP_002243953.1\|20934_21345_-\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000007.1\|WP_002221870.1\|33202_33787_+\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|260003

Protein	Function_ID	Function_description	E-value
NZ_FFCX01000007.1\|WP_002243954.1\|19876_20686_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	3.64357e-132
NZ_FFCX01000007.1\|WP_002225965.1\|22819_23812_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|182909	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC.	9.35313e-118
NZ_FFCX01000007.1\|WP_002226919.1\|35603_36227_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	7.65681e-89
NZ_FFCX01000007.1\|WP_002218608.1\|19489_19867_+\|outer-membrane-protein-assembly-factor-BamE	gnl\|CDD\|225465	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane].	2.6515e-43
NZ_FFCX01000007.1\|WP_002225964.1\|24305_27065_+\|Rne/Rng-family-ribonuclease	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	0
NZ_FFCX01000007.1\|WP_002218609.1\|18836_19271_-\|ferric-iron-uptake-transcriptional-regulator	gnl\|CDD\|236527	PRK09462, fur, ferric uptake regulator; Provisional.	8.21782e-56
NZ_FFCX01000007.1\|WP_002239446.1\|39886_40684_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	3.33614e-65
NZ_FFCX01000007.1\|WP_002215509.1\|29485_30913_+\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
NZ_FFCX01000007.1\|WP_002216282.1\|21599_22754_-\|lipid-A-disaccharide-synthase	gnl\|CDD\|223834	COG0763, LpxB, Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane].	9.9158e-175
NZ_FFCX01000007.1\|WP_002221872.1\|28336_29326_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	3.90221e-172
NZ_FFCX01000007.1\|WP_010980756.1\|31238_33134_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_FFCX01000007.1\|WP_002221868.1\|34731_35505_-\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	4.38752e-83
NZ_FFCX01000007.1\|WP_002243955.1\|18041_18767_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|225235	COG2360, Aat, Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones].	2.66319e-108
NZ_FFCX01000007.1\|WP_002218592.1\|39137_39884_+\|isoprenyl-transferase	gnl\|CDD\|376506	pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase. Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.	1.02554e-133
NZ_FFCX01000007.1\|WP_002221870.1\|33202_33787_+\|ribonuclease-HII	gnl\|CDD\|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	2.54685e-105
NZ_FFCX01000007.1\|WP_002216270.1\|38524_39082_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	8.06261e-103
NZ_FFCX01000007.1\|WP_002226918.1\|37217_38345_+\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	6.45741e-46

>NZ_FFCX01000007.1|WP_002225964.1|24305_27065_+|Rne/Rng-family-ribonuclease
MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLPFKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPGNIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEAMKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTDDVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWWDSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREVAGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETEVQTGKRRRNGSRSERGQTAPETATVAETTVQTAENTPSEPHTAEDKGSKPKSERNRRERDSRDAKERRERNNQRDRRQNGKKRNIPSAAKIEQYLNIHDTADKVRSAAAHVFGETDANAPITVSIADPVAERDLPTASPAVSNGDAPVYDAAEKIRRATAAILPEGATPKAEAQEMPSETATFTAAAEQARETAQTGGLVLIETDPAALKAWAAQPEVQAGRGLRRSEQPKPSEVATVPAEEMIQVETRQG
>NZ_FFCX01000007.1|WP_017629009.1|23889_24183_-|hypothetical-protein
MHVPENRVRKGRIQKAIKIDAAVCLPRSERCGRKNGGRLLLVIVMPVFWAVCVWDLGPGCRLTSAPKRQNQFKLDYVLRLPAGNRRRENALRSAFLI
>NZ_FFCX01000007.1|WP_002225965.1|22819_23812_-|RluA-family-pseudouridine-synthase
MKTHEISKDSVSLIGVAEHEAGQRLDNYLIKILKGVPKSHIHRIIRAGEVRLNKKRCKPDSRIAEGDTVRIPPVRVAEKEMPSERRAAVPARAFDVVYEDDALLVIDKPSGVAVHGGSGVSFGVIEQLRRARPEAKYLELVHRLDKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLPDDNFHVKLPLFKYTGAQGEKMVRVSADGQSAHTVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQIRVHLQSQGCPIAGDERYGDYQANRRLQKLGLKRMFLHASELHLNHPLTGEPLVLKAELPPDLAQFAVMLENGTKM
>NZ_FFCX01000007.1|WP_002216282.1|21599_22754_-|lipid-A-disaccharide-synthase
MVDKKSPLIAVSVGEASGDLLGAHLIRAIRKRCPQARFVGIGGELMKAEGFESLYDQERLAVRGFAEVVKRLPEILRIRRGLVRDLLSLKPDVFVGIDAPDFNLGVAERLKRAGIPTLHYVSPSVWAWRRERVGKIVHQVNRVLCLFPMEPQLYLDAGGRAEFVGHPMAQLMPLEDDRETARKTLGVDAGIPVFALLPGSRVSEIDYMAPVFFQTALLLLERYPAARFLLPAATAATKRRLAEVLQRPEFAGLPLTVIDRQSETVCRAADAVLVTSGTATLEVALCKRPMVISYKISPLTYAYVKRKIKVPHVGLPNILLGKEAVPELLQHDAVPEKLAAALADWYEHPDKVAALQQDFRALHLLLKKDTADLAARAVLEEAGC
>NZ_FFCX01000007.1|WP_025461687.1|21346_21592_-|hypothetical-protein
MDYFPEAARITKKGGEIVINGTSNNKYLRGIPNETELARMGLRLKYNGPLKEEFKQLKFQKSSRTNLDSKNLKLIVFEKVK
>NZ_FFCX01000007.1|WP_002243953.1|20934_21345_-|hypothetical-protein
MTTYTIPKKDYQFLYIYEGTLLNYTLKNDEFHIIVQNVDYPDFPQEIPTPNYIDWVKIKFKQFSYLKFIYGYATKSQDKDIDNILELGELKQDDEILDYGGTLELIGGRCDLLTGFSIDIVCREIELEFLDQESFN
>NZ_FFCX01000007.1|WP_002243954.1|19876_20686_+|4-hydroxy-tetrahydrodipicolinate-reductase
MTPLKIAIAGVNGRMGRVLVEAVNNHPDTVLSGALEHSGSEALGLDAGYAVGLKTGIAISDDVDAVLAQSDVLIDFTRPEPTLKHLQKCVEKQVNIIIGTTGFDDAGKAAIQAAGEKTGVVFAANFSVGVNLTFHLLDTVARVLNEGYDIEIIEGHHRHKVDAPSGTALRMGEVIAGALGRDLKQCAVYGREGHTGPRDPSTIGFATVRAGDIVGDHTALFATDGERVEITHKASSRMTFAAGAVRAAVWVNGKTGLYDMQDVLGLNNR
>NZ_FFCX01000007.1|WP_002218608.1|19489_19867_+|outer-membrane-protein-assembly-factor-BamE
MNKTLILALSALLGLAACSAERVSLFPSYKLKIIQGNELEPRAVAALRPGMTKDQVLLLLGSPILRDAFHTDRWDYTFNTSRNGIIKERSNLTVYFENGVLVRTEGDVLQNAAEALKDRQNTDKP
>NZ_FFCX01000007.1|WP_002218609.1|18836_19271_-|ferric-iron-uptake-transcriptional-regulator
MEKFNNIAQLKDSGLKVTGPRLKILDLFETHAEEHLSAEDVYRILLEEGVEIGVATIYRVLTQFEQAGILQRHHFETGKAVYELDKGDHHDHIVCVKCGEVTEFHNPEIEALQDKIAEENGYRIVDHALYMYGVCSDCQAKGKR
>NZ_FFCX01000007.1|WP_002243955.1|18041_18767_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRIPLLAPDNYAFPDPAYALARCDGLVGVSGDLDTGRLLEAYRNGVFPWFSRDGWFFWYAVGPRAVIVPERLHVPRSLAKTLRNGSYRVAVNGCFAEVVAHCAAAARPNQDGTWIAPEFQTAYLKLHEMGYAHSFECHYPDESGETRLAGGFYGVQIGSVFYGESMFALQPDASKIAFACAVPFLADLGVELIDCQQDTEHMRRFGSELLPFADFAERLRMLNAVPLKEEIGRREVACKGL
>NZ_FFCX01000007.1|WP_002221872.1|28336_29326_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MKQPVFAVTSGEPAGIGPDICLDLAFARLPCRCAVLGDKNLLRARAEALGKSVVLRDFDPESGGAAYGELEVLHIPAVEAVEAGKLNPANAAYVLQLLDTALAGISDGIFDGIVTAPLHKGIINDARASTGFFSGHTEYLAEKSGTGQVVMMLAGKGLRVALVTTHLPLKDVAAAITQPLIESVARILHHDLKHKFGIKNPKILVAGLNPHAGEGGHLGHEETDTIIPALENLRREGINLAGPYPADTLFQPFMLEGADAVLAMYHDQGLPVLKYHSFGQGVNITLGLPFIRTSVDHGTALDLAATGRADSGSLITAVETAVEMARGSL
>NZ_FFCX01000007.1|WP_002215509.1|29485_30913_+|sodium:alanine-symporter-family-protein
MNENFTEWLHGWVGAINDPMWSYLVYMLLGTGLFFTVTTGFVQFRLFGRSIKEMLGGRKQGDDPHGITPFQAFVTGLASRVGVGNIAGVAIAIKVGGPGAVFWMWVTALIGMSSAFVESSLAQLFKVRDYDNHHFRGGPAYYITQGLGQKWLGVLFALSLIFCFGFVFEAVQTNTIADTVKAAWGWEPHYVGVALVILTAPIIFGGIRRISKAAEIVVPLMAVLYLFIALFIILTNIPMIPDVFGQIFSGAFKFDAAAGGLLGGLISQTMMMGIKRGLYSNEAGMGSAPNAAAAAEVKHPVSQGMIQMLGVFVDTIIVCSCTAFIILIYQQPYGDLSGAALTQAAIVSQVGQWGAGFLAVILFMFAFSTVIGNYAYAESNVQFIKSHWLITAVFRMLVLAWVYFGAVANVPLVWDMADMAMGIMAWINLVAILLLSPLAFMLLRDYTAKLKMGKDPEFKLSEHPGLKRRIKSDVW
>NZ_FFCX01000007.1|WP_010980756.1|31238_33134_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MTHMIYPKTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELDALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQAVEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLGGRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNADMHPRQVSCWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIAGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVSEAQWRMFNEKREAVEREIQRLKTTWYTPQKLAEGEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASRISGVTPAAVALLMVHLKRGFKDAK
>NZ_FFCX01000007.1|WP_002221870.1|33202_33787_+|ribonuclease-HII
MHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAVEWHVAAASPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAPVRNLLAQQALF
>NZ_FFCX01000007.1|WP_002221868.1|34731_35505_-|ParA-family-protein
MSANILAIANQKGGVGKTTTTVNLAASLASRGKRVLVVDLDPQGNATTGSGIDKAGLQSGVYQVLLGDADVQSAAVRSKEGGYAVLGANRALAGAEIELVQEIAREVRLKNALKAVEEDYDFILIDCPPSLTLLTLNGLVAAGGVIVPMLCEYYALEGISDLIATVRKIRQAVNPDLDITGIVRTMYDSRSRLVAEVSEQLRSHFGDLLFETVIPRNIRLAEAPSHGMPVMAYDAQAKGTKAYLALADELAARVSGK
>NZ_FFCX01000007.1|WP_002226919.1|35603_36227_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MERKERLRAGIAAMGLDISETAQDRLLVYVDLLKKWNKTYNLTALRDEEKMIVHHLLDSLTLLPHIEGVQTMLDVGSGGGQPGIPAAVCRPDVQITLLDANTKKTAFLQQAVIELGLDNVRVVSGRVEAVSDVRADVVTSRAFAELADFVSWTVHLLKDGGYWAAMKGVYPQEEIGRLPQDVCVEKVQRLDVPGLDAERHIVILSKR
>NZ_FFCX01000007.1|WP_002226918.1|37217_38345_+|FUSC-family-protein
MNTSQRNRLVSRWLNSYERYRYRRLIHAVRLGGAVLFATASARLLHLQHGEWIGMTVFVVLGMLQFQGAIYSKAVERMLGTVIGLGAGLGVLWLNQHYFHGNLLFYLTVGTASALAGWAAVGKNGYVPMLAGLTMCMLIGDNGSEWLDSGLMRAMNVLIGAAIAIAAAKLLPLKSTLMWRFMLADNLADCSKMIAEISNGRRMTRERLEENMAKMRQINARMVKSRSHLAATSGESRISPAMMEAMQHAHRKIVNTTELLLTTAAKLQSPKLNGSEIRLLDRHFTLLQTDLQQTVALINGRHARRIRIDTAINPELEALAEHLHYQWQGFLWLSTNMRQEISALVILLQRTRRKWLDAHERQHLRQSLLETREHG
>NZ_FFCX01000007.1|WP_002216270.1|38524_39082_+|ribosome-recycling-factor
MINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDLMAI
>NZ_FFCX01000007.1|WP_002218592.1|39137_39884_+|isoprenyl-transferase
MKSSTQAVLEHTAIPKHIAVIMDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRRLHENNMRLKILGSRERFNRQILQGIEEAEALTANNTGLTLSIAADYGGRWDILQAANKLIAEGVSEITEDTLAKHLMLGDAPEPDLFIRTGGETRISNFLLWQMAYAELYFTDILWPDFDGKALDDAVASFQKRERRFGRTSEQLPIEQQRN
>NZ_FFCX01000007.1|WP_002239446.1|39886_40684_+|phosphatidate-cytidylyltransferase
MLKQRVITAMWLLPLMLGMLFYAPQWLWAAFCGLIALIALWEYARMGGLCKIKTNHYLAATLVFGVVAYAGGWMLPNLVWYVVLAFWLAVMPLWLRFKWRLNGGWQVYAVGWLLVMPFWFALVSLRPHPDDALPLLAVMGLVWVADICAYFSGKAFGKHKIAPAISPGKSWEGAIGGAVCVAVYMTAVRSAGWLAFDTGWFDTVLIGLVLTVVSVCGDLLESWLKRAAGIKDSSKLLPGHGGVFDRTDSLIAVISVYAAMMSVLN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

15. NZ_FFCX01000002

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

16. NZ_FFCX01000001

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

118918 : 128166

Burkholderia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222380.1\|118918_121198_+	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	1.2e-309	67.6
WP_002222381.1\|121269_122283_+	DNA (cytosine-5-)-methyltransferase	E5E3X6	Burkholderia_phage	8.0e-88	52.8
WP_002213380.1\|122275_123463_+	type II restriction enzyme	E5E3X4	Burkholderia_phage	6.6e-33	38.9
WP_002213381.1\|123523_124657_+	ribonucleotide-diphosphate reductase subunit beta	W6AT53	Erwinia_phage	1.4e-165	75.1
WP_002217077.1\|124911_125202_+	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	7.5e-15	54.5
WP_002213385.1\|125242_125521_-	cell division protein FtsB	NA	NA	NA	NA
WP_002222383.1\|125534_126821_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.5e-147	62.3
WP_002222384.1\|126868_127309_-	DUF4149 domain-containing protein	NA	NA	NA	NA
WP_002222386.1\|127323_128166_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	5.7e-47	41.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

17. NZ_FFCX01000037

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CRISPR-Cas detection and classification

Crispr_ID: NZ_FFCX01000037_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_FFCX01000037_1

16360-16532

Orphan

I-E

Consensus_repeat	Method
CCGTCATTCCCGCGCAGGCGGGAATCCAGACCGT	PILER-CR

2 spacers

The CRISPR arrays of NZ_FFCX01000037_1

>merge|NZ_FFCX01000037|1|16360-16532|PILER-CR
CGTCATTCCCGCGTAGGCGGGAATCCAGACCTTGGGATAACAGCAATATTCAAAGGTTATAAAAGACCCGTCATTCCCGCGCAGGCGGGAATCTAGAACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATGCCGTCATTCCCGCGCAGGCGGGAATCCAGACTGT

>NZ_FFCX01000037|1|1|16360-16532|PILER-CR
CGTCATTCCCGCGTAGGCGGGAATCCAGACCTTG	GGATAACAGCAATATTCAAAGGTTATAAAAGACC
CGTCATTCCCGCGCAGGCGGGAATCTAGAACGTA	AAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATGC
CGTCATTCCCGCGCAGGCGGGAATCCAGACTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_FFCX01000037.1\|WP_002225667.1\|8312_9404_-\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_FFCX01000037.1\|WP_002225669.1\|11834_12530_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133044
NZ_FFCX01000037.1\|WP_002217944.1\|11369_11801_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|225308
NZ_FFCX01000037.1\|WP_002225668.1\|9518_11195_-\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
NZ_FFCX01000037.1\|WP_002221507.1\|13160_13601_-\|HpaR-family-adhesin-repressor-NadR	unknown	unknown	gnl\|CDD\|188209
NZ_FFCX01000037.1\|WP_010980996.1\|8000_8255_-\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000037.1\|WP_061706013.1\|14817_15897_+\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|378455
NZ_FFCX01000037.1\|WP_002224077.1\|12545_13046_-\|4-hydroxyphenylacetate-3-monooxygenase,-reductase-component	unknown	unknown	gnl\|CDD\|131349
NZ_FFCX01000037.1\|WP_010980997.1\|13604_13727_-\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000037.1\|WP_002233029.1\|13943_14453_-\|protein-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239309

Protein	Function_ID	Function_description	E-value
NZ_FFCX01000037.1\|WP_002225667.1\|8312_9404_-\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_FFCX01000037.1\|WP_002225669.1\|11834_12530_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|133044	cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.	3.40838e-98
NZ_FFCX01000037.1\|WP_002217944.1\|11369_11801_+\|EamA-family-transporter	gnl\|CDD\|225308	COG2510, COG2510, Predicted membrane protein [Function unknown].	4.28653e-54
NZ_FFCX01000037.1\|WP_002225668.1\|9518_11195_-\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
NZ_FFCX01000037.1\|WP_002221507.1\|13160_13601_-\|HpaR-family-adhesin-repressor-NadR	gnl\|CDD\|188209	TIGR02337, Homoprotocatechuate_degradative_operon_repressor., homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.	7.34663e-62
NZ_FFCX01000037.1\|WP_061706013.1\|14817_15897_+\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	1.35029e-142
NZ_FFCX01000037.1\|WP_002224077.1\|12545_13046_-\|4-hydroxyphenylacetate-3-monooxygenase,-reductase-component	gnl\|CDD\|131349	TIGR02296, HpaC, 4-hydroxyphenylacetate 3-monooxygenase, reductase component. This model identifies the reductase component (HpaC) of 4-hydroxyphenylacetate 3-monooxygenase. This enzyme catalyzes the first step (hydroxylation at the 3-position) in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. 4-hydroxyphenylacetate arises from the degradation of tyrosine. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.	5.30018e-98
NZ_FFCX01000037.1\|WP_002233029.1\|13943_14453_-\|protein-disulfide-oxidoreductase	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	2.27404e-52

>NZ_FFCX01000037.1|WP_061706013.1|14817_15897_+|iron-sulfur-cluster-carrier-protein-ApbC
MNIQNIRTLLDTVAVPNTARTLGGEKAVRSVEQRSDGIHIALHFGFPVAHIAAAVADSVQEILMPETGGAHIHLSIDTEIGTHKVQPGVTTIKGVKNIIAVASGKGGVGKSTTTANLAAAMARMGARVGVLDADLYGPSQPTMLGVDDRKPDQKNQKLIPVESSGGIQVMSIGFLVDTGQAVVWRGPMVSQALQQLMFQSEWDEVDYLFIDLPPGTGDIQLTLSQRIPVTGSVIVTTPQDIALIDARKAVDMFRKVNIPILGVLENMSVHICTNCGHSEALFGTDGGKDLAARLNVPLLGQLPLSLPVREAMDGGTPAQLFDEHPAIAKIYTDAAFQIALSIADKGKDFSSRFPKIVVE
>NZ_FFCX01000037.1|WP_002233029.1|13943_14453_-|protein-disulfide-oxidoreductase
MKKKLLSGIKFAVQTALVFLLVSLFLDWIRKPDEPAGAAGRPLTLLSGQRLTLGQFSRDKAVLVYFWGSWCGVCRYQSPIIDDLAADGVPVVGVAVRSGSASEVAAYMAKRGLGFPTVNDEDGGLARSWRIVATPAVVLVKNGKMVHYTTGISSYWGLRARIFQADVFG
>NZ_FFCX01000037.1|WP_010980997.1|13604_13727_-|hypothetical-protein
MRFIAYCCYMFVLLYNGCIKIYAHRLSRRFESLIFDNLET
>NZ_FFCX01000037.1|WP_002221507.1|13160_13601_-|HpaR-family-adhesin-repressor-NadR
MPTQSKHASINISLIQAREALMTQFRPILNQANITDQQWRIIRLLAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGEKLYEEIGEEVDERYDAIEEVLGREKMLLLKDLLAELAKIEDALNS
>NZ_FFCX01000037.1|WP_002224077.1|12545_13046_-|4-hydroxyphenylacetate-3-monooxygenase,-reductase-component
MADLQKTFQTSFRDAMASCAAGVHVITTDGAAGRYGITMTAVAPVTDEPPTVMLCINRSARIIPILSENGSLCINTLADEHQDVAEHFAGLTGLSPEERFAYHIWHRGKTGQLEIEGALAHLHGHIVGKHEIGTHFVFYVRLDEIKNCGCKRPALLYFRRQFRFLD
>NZ_FFCX01000037.1|WP_002225669.1|11834_12530_-|nucleotidyltransferase-family-protein
MKAMILAAGRGERMRPLTDTTPKPLLDVAGKPLIGWHLCRLKQAGFTEIVINHAWLGRQIEDALGDGSAYGVNIAYSPEPAGGLETAGGIAQALPLLGGQPFLVVNGDVLTDIDFTAAFQTASSLPEHISAHLWLVENPPHNPDGDFSLLPDSSVRPEVNGGNGLTFSGVGIYRPEMFDGIEAGSVAKLAPVLRGEMRQNRVSGQKHTGLWLDVGTVCRLKEAQALAGAWK
>NZ_FFCX01000037.1|WP_002217944.1|11369_11801_+|EamA-family-transporter
MGSNAWLFWALASAGFASLTAIFAKMGLQGIDSDFATFIRTLVILAALLLFLTYTGKWQGVNGFTGRNWTFLILSGLATGASWLAYFKALQLGNASQVAPIDKFSLVLVALMAVVFLDERPNTQEWIGLGLVTAGVLVLALKR
>NZ_FFCX01000037.1|WP_002225668.1|9518_11195_-|formate--tetrahydrofolate-ligase
MSFKTDAEIAQSSTMRPIGEIAAKLGLNADNIEPYGHYKAKINPAEAFKLPQKQGRLILVTAINPTPAGEGKTTVTIGLADALRHIGKDAVIALREPSLGPVFGVKGGAAGGGYAQVLPMEDINLHFTGDFHAIGAANNLLAAMLDNHIYQGNELNIDPKRVLWRRVVDMNDRQLRNIIDGMGKPVDGVMRPDGFDITVASEVMAVFCLAKDISDLKERLGNILVAYAKDGSPVYAKDLKANGAMAALLKDAIKPNLVQTIEGTPAFVHGGPFANIAHGCNSVTATRLAKHLADYAVTEAGFGADLGAEKFCDIKCRLAGLKPDAAVVVATVRALKYNGGVERANLGEENLDALEKGLPNLLKHISNLKNVFGLPVVVALNRFVSDADAELAMIEKACAEHGVEVSLTEVWGKGGAGGADLARKVVNAIESQTNNFGFAYDVELGIKDKIRAIAQKVYGAEDVDFSAEASAEIASLEKLGLDKMPICMAKTQYSLSDNAKLLGCPEDFRIAVRGITVSAGAGFIVALCGNMMKMPGLPKVPAAEKIDVDAEGVIHGLF
>NZ_FFCX01000037.1|WP_002225667.1|8312_9404_-|redox-regulated-ATPase-YchF
MSLKCGIVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIVEVPDPRMAELAKIVNPQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRVDPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVDLCKKLLPHLDEGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFENNPHLDRLKELAAKENAPVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVRAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVVQDGDVMHFLFNV
>NZ_FFCX01000037.1|WP_010980996.1|8000_8255_-|hypothetical-protein
MIFGVSRTAGMQPHQNKLPPAFPICPPRFLQNKPPAPPLREAVRHSEYPDPRYEMTFQTAFAPPRFEYSGLTLNQDKATKPQTV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_FFCX01000037_1	1.1\|16394\|34\|NZ_FFCX01000037\|PILER-CR	16394-16427	34	NZ_FFCX01000008.1	1042-1075	0	1.0
NZ_FFCX01000037_1	1.1\|16394\|34\|NZ_FFCX01000037\|PILER-CR	16394-16427	34	NZ_FFCX01000024.1	12136-12169	2	0.941
NZ_FFCX01000037_1	1.2\|16462\|38\|NZ_FFCX01000037\|PILER-CR	16462-16499	38	NZ_FFCX01000093.1	18-55	0	1.0

1. spacer 1.1|16394|34|NZ_FFCX01000037|PILER-CR matches to position: 1042-1075, mismatch: 0, identity: 1.0

gggataacagcaatattcaaaggttataaaagac	CRISPR spacer
gggataacagcaatattcaaaggttataaaagac	Protospacer
**********************************

2. spacer 1.1|16394|34|NZ_FFCX01000037|PILER-CR matches to position: 12136-12169, mismatch: 2, identity: 0.941

gggataacagcaatattcaaaggttataaaagac	CRISPR spacer
gggatagcggcaatattcaaaggttataaaagac	Protospacer
******.*.*************************

3. spacer 1.2|16462|38|NZ_FFCX01000037|PILER-CR matches to position: 18-55, mismatch: 0, identity: 1.0

aaaatctaaagaaaccgtgttgtaacggcagaccgatg	CRISPR spacer
aaaatctaaagaaaccgtgttgtaacggcagaccgatg	Protospacer
**************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

18. NZ_FFCX01000081

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CRISPR-Cas detection and classification

Crispr_ID: NZ_FFCX01000081_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_FFCX01000081_1

612-709

Orphan

I-E

Consensus_repeat	Method
CGTCATTCCCGCAAAAGTGGGAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_FFCX01000081_1

>merge|NZ_FFCX01000081|1|612-709|CRISPRCasFinder
CGTCATTCCCGCAAAAGTGGGAATCTAGTTCGTTGGTTTCAGTTATTTAGAATAAATTTTGAAACTTTAATCCCGTCATTCCCGCGAAAGTGGGAATC

>NZ_FFCX01000081|1|1|612-709|CRISPRCasFinder
CGTCATTCCCGCAAAAGTGGGAATC	TAGTTCGTTGGTTTCAGTTATTTAGAATAAATTTTGAAACTTTAATCC
CGTCATTCCCGCGAAAGTGGGAATC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

19. NZ_FFCX01000059

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

20. NZ_FFCX01000006

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CRISPR-Cas detection and classification

Crispr_ID: NZ_FFCX01000006_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_FFCX01000006_1

31268-31435

Orphan

Consensus_repeat	Method
CCGCAACATTAAATTTCT	PILER-CR

2 spacers

The CRISPR arrays of NZ_FFCX01000006_1

>merge|NZ_FFCX01000006|1|31268-31435|PILER-CR
CCGCAACATTAAATTTCTAGATTCCCACTTTCGTGGGAATGACGGCGGAGCGGTTGCTGTTTTTCCCAATAAATGCCCCCCAACCTAAAATCCGTCATTCCCGCGCAGGCGGGAATCTAGTCCGTTCGGTTTCGGTTTTTTTGGCTAGTGCCGCAACATTAAATTTCT

>NZ_FFCX01000006|1|1|31268-31435|PILER-CR
CCGCAACATTAAATTTCT	AGATTCCCACTTTCGTGGGAATGACGGCGGAGCGGTTGCTGTTTTTCCCAATAAATGCC
CCCCAACCTAAAATCCGT	CATTCCCGCGCAGGCGGGAATCTAGTCCGTTCGGTTTCGGTTTTTTTGGCTAGTGCCGC
AACATTAAATTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_FFCX01000006.1\|WP_002212913.1\|25962_26157_+\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000006.1\|WP_002244190.1\|27825_30591_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_FFCX01000006.1\|WP_002225081.1\|23483_25565_+\|carbon-starvation-protein-A	unknown	unknown	gnl\|CDD\|184976
NZ_FFCX01000006.1\|WP_010980947.1\|23287_23377_-\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000006.1\|WP_017201199.1\|32484_32595_-\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000006.1\|WP_010980948.1\|23383_23452_-\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000006.1\|WP_002244191.1\|34821_35286_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_FFCX01000006.1\|WP_002225074.1\|36940_37228_-\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000006.1\|WP_002238123.1\|36416_36944_+\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000006.1\|WP_153958485.1\|21935_22345_+\|CdiI-family-contact-dependent-growth-inhibition-immunity-protein	unknown	unknown	gnl\|CDD\|369293
NZ_FFCX01000006.1\|WP_002225078.1\|32594_33812_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NZ_FFCX01000006.1\|WP_002216863.1\|26264_26825_+\|rRNA-large-subunit-pseudouridine-synthase-E	unknown	unknown	gnl\|CDD\|211334
NZ_FFCX01000006.1\|WP_009347435.1\|30620_30854_+\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000006.1\|WP_002225082.1\|22626_23007_-\|lysozyme-inhibitor	unknown	unknown	gnl\|CDD\|378282
NZ_FFCX01000006.1\|WP_002225077.1\|34011_34740_-\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
NZ_FFCX01000006.1\|WP_002225071.1\|39492_41211_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223097
NZ_FFCX01000006.1\|WP_002225072.1\|38192_39401_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235406
NZ_FFCX01000006.1\|WP_002225075.1\|35502_36279_+\|tRNA-threonylcarbamoyladenosine-dehydratase	unknown	unknown	gnl\|CDD\|224100
NZ_FFCX01000006.1\|WP_002212918.1\|25554_25749_+\|YbdD/YjiX-family-protein	unknown	unknown	gnl\|CDD\|225434
NZ_FFCX01000006.1\|WP_002225073.1\|37297_38152_+\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|224273

Protein	Function_ID	Function_description	E-value
NZ_FFCX01000006.1\|WP_002244190.1\|27825_30591_+\|TonB-dependent-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	2.73536e-36
NZ_FFCX01000006.1\|WP_002225082.1\|22626_23007_-\|lysozyme-inhibitor	gnl\|CDD\|378282	pfam09864, MliC, Membrane-bound lysozyme-inhibitor of c-type lysozyme. Lysozymes are ancient and important components of the innate immune system of animals that hydrolyze peptidoglycan, the major bacterial cell wall polymer. Various mechanisms have evolved by which bacteria can evade this bactericidal enzyme, one being the production of lysozyme inhibitors. MliC (membrane bound lysozyme inhibitor of c-type lysozyme) of E. coli and Pseudomonas aeruginosa, possess lysozyme inhibitory activity and confer increased lysozyme tolerance upon expression in E. coli. Structural analyses show that the invariant loop of MliC plays a crucial role in the inhibition of the lysozyme by its insertion into the active site cleft of the lysozyme, where the loop forms hydrogen and ionic bonds with the catalytic residues.	6.77923e-11
NZ_FFCX01000006.1\|WP_002225072.1\|38192_39401_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|235406	PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional.	0
NZ_FFCX01000006.1\|WP_002225071.1\|39492_41211_+\|arginine--tRNA-ligase	gnl\|CDD\|223097	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	0
NZ_FFCX01000006.1\|WP_002244191.1\|34821_35286_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	1.19999e-31
NZ_FFCX01000006.1\|WP_153958485.1\|21935_22345_+\|CdiI-family-contact-dependent-growth-inhibition-immunity-protein	gnl\|CDD\|369293	pfam07262, CdiI, CDI immunity protein. CdiI immunity proteins function as part of the bacterial contact-dependent growth inhibition (CDI) system. CDI is mediated by the CdiB-CdiA two-partner secretion system. Each CdiA protein exhibits a distinct growth inhibition activity, which resides in the polymorphic C-terminal region (CdiA-CT). Cells with the CDI sytem also express a CdiI immunity protein that blocks the activity of cognate CdiA-CT, thereby protecting the cell from autoinhibition. In many CDI systems the cdiBAI genes are followed by orphan cdiA-CT/cdiI modules, suggesting that these modules are exchanged between the CDI systems of different bacteria.	7.74297e-62
NZ_FFCX01000006.1\|WP_002225078.1\|32594_33812_-\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_FFCX01000006.1\|WP_002216863.1\|26264_26825_+\|rRNA-large-subunit-pseudouridine-synthase-E	gnl\|CDD\|211334	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE. This group is comprised of bacterial proteins similar to E. coli RluE. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. Escherichia coli RluE makes psi2457 in 23S RNA. psi2457 is not universally conserved.	2.70565e-101
NZ_FFCX01000006.1\|WP_002225081.1\|23483_25565_+\|carbon-starvation-protein-A	gnl\|CDD\|184976	PRK15015, PRK15015, carbon starvation protein CstA.	0
NZ_FFCX01000006.1\|WP_002225077.1\|34011_34740_-\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	1.49575e-161
NZ_FFCX01000006.1\|WP_002225075.1\|35502_36279_+\|tRNA-threonylcarbamoyladenosine-dehydratase	gnl\|CDD\|224100	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism].	2.39456e-129
NZ_FFCX01000006.1\|WP_002212918.1\|25554_25749_+\|YbdD/YjiX-family-protein	gnl\|CDD\|225434	COG2879, COG2879, Uncharacterized small protein [Function unknown].	2.65699e-29
NZ_FFCX01000006.1\|WP_002225073.1\|37297_38152_+\|segregation/condensation-protein-A	gnl\|CDD\|224273	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair].	1.73705e-74

>NZ_FFCX01000006.1|WP_009347435.1|30620_30854_+|hypothetical-protein
MPSESPSDGICFPKRIILPQAYANPFYRIGNSKKNPFHSHAGKPVFDFGYFWLFRVIYESSFPQKRESVFLSFSHFR
>NZ_FFCX01000006.1|WP_002244190.1|27825_30591_+|TonB-dependent-receptor
MRSSFRLKPICFYLMGVTLYHYSYAEDAGRAGSEAQIQVLEDVHVKAKRVPKDKKVFTDARAVSTRQDIFKSSENLDNIVRSIPGAFTQQDKSSGIVSLNIRGDSGFGRVNTMVDGITQTFYSTSTDAGRAGGSSQFGASVDSNFIAGLDVVKGSFSGSAGINSLAGSANLRTLGVDDVVQGNNTYGLLLKGLTGTNSTKGNAMAAIGARKWLESGASVGVLYGHSRRSVAQNYRVGGGGQHIGNFGAEYLERRKQRYFVQEGALKFNSDSGKWERDLQRQQWKYKPYKNYNNQELQKYIEEHDKSWRENLAPQYDITPIDPSSLKQQSAGNLFKLEYDGVFNKYTAQFRDLNTKIGSRKIINRNYQFNYGLSLNPYTNLNLTAAYNSGRQKYPKGSKFTGWGLLKDFETYNNAKILDLNNTATFRLPRETELQTTLGFNYFHNEYGKNRFPEELGLFFDGPDQDNGLYSYLGRFKGDKGLLPQKSTIVQPAGSQYFNTFYFDAALKKDIYRLNYSTNTVGYRFGGEYTGYYGSDDEFKRAFGENSPTYKKHCNRSCGIYEPVLKKYGKKRANNHSVSISADFGDYFMPFASYSRTHRMPNIQEMYFSQIGDSGVHTALKPERANTWQFGFNTYKKGLLKQDDTLGLKLVGYRSRIDNYIHNVYGKWWDLNGDIPSWVSSTGLAYTIQHRNFKDKVHKHGFELELNYDYGRFFTNLSYAYQKSTQPTNFSDASESPNNASKEDQLKQGYGLSRVSALPRDYGRLEVGTRWLGNKLTLGGAMRYFGKSIRATAEERYIDGTNGGNTSNFRQLGKRSIKQTETLARQPLIFDFYAAYEPKKNLIFRAEVKNLFDRRYIDPLDAGNDAATQRYYSSFDPKDKDEDVTCNADKTLCNGKYGGTSKSVLTNFARGRTFLMTMSYKF
>NZ_FFCX01000006.1|WP_002216863.1|26264_26825_+|rRNA-large-subunit-pseudouridine-synthase-E
MKNLIAFNKPYGVICQFSPHEKHKSLKDFINLPGFYPAGRLDTDSEGLLLLTDDGRLQAQITDPKFKHPKTYWAQLEGVPDESRLESLRKGIDLGGFVTRPASIRILKHGEADSLWERIPPIRVRKTVPDFWIEITISEGKNRQVRRMTAKAGYPCLRLIRVASGRLKLFDLDLKPGEWAYAPFKP
>NZ_FFCX01000006.1|WP_002212913.1|25962_26157_+|hypothetical-protein
MNPSQYLFIDLNFDKIPDTRLCCFSIFQPTVNLKQPVHAMLQFLFLSADCFDKELKIHFMHLKI
>NZ_FFCX01000006.1|WP_002212918.1|25554_25749_+|YbdD/YjiX-family-protein
MKHKLASWWKTIKLTANLMAGVPDYENYVAQQRKHNPNAPVMTKLQFQDYCRKRRCGANGGRCC
>NZ_FFCX01000006.1|WP_002225081.1|23483_25565_+|carbon-starvation-protein-A
MKSLKTFLIWGIVVLVGLASFTTLALSRGEQVSAVWMVTAAISVYCIAYRFYSLYIANRVMRLDPDRLTPAERHNDGLDYVPTHKGVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGTLWIIFGVVFAGAVQDMMVLFVSMRRDGKSLGDIVKQELGTVPGVIASIGILMIMVIIMAVLALIVVKALVHSPWGTFTIAATMPIALFMGIYTRYIRPGKIGEISIVGFILLMLAVIYGEDVAKSSIGHWFDLDGIQLTWAIMIYGFVASVLPVWLLLTPRDYLSTFLKIGTIAALALGIVIVNPALQMPAVTHFIDGSGPVFSGALFPFLFITIACGAVSGFHALISSGTTPKMLENETHVRMIGYGGMLMESFVAIMALAAAASLDPGVYFAMNSPAALIGTDANTAAEVITTKLQFPVDAATLLHTAKEVGENTILSRAGGAPTLAVGMAHIMSRLIPGEAMMAFWYHFALLFEALFILTAVDAGTRVARFMIQDLGSIFYKPFGNTDSIPANLIATFFAVALWGYFLYTGVTDPLGGINSLWPLFGIANQMLAGVALIMCAVVLIKMKRDRYVWVVLVPAVGVLFVTCYAGLQKLFHSDPRISFLAHAGKYSDALAKNEILAPAKDIGEMAQIIFNDKINAGLTILFLSVVVIVAAYGLRTALKARKVGWPTAKEIPAVYRDGKQPEAQSEA
>NZ_FFCX01000006.1|WP_010980948.1|23383_23452_-|hypothetical-protein
MPERRETAEPSAGTGTNRSLND
>NZ_FFCX01000006.1|WP_010980947.1|23287_23377_-|hypothetical-protein
MKQCACRDLCLMPASNSAGMRAHKTLNAE
>NZ_FFCX01000006.1|WP_002225082.1|22626_23007_-|lysozyme-inhibitor
MNIRFFALTVPVLSLAACAVPEAYDDGGRGHMPPVQNQAGTDDFRAFSCENGLSVRVRHLDSGKVALRLDGRRAVLSSDVAASGERYTAEHGLFGNATEWHQKGGEAFFGFTDAYGNSVETSCRAR
>NZ_FFCX01000006.1|WP_153958485.1|21935_22345_+|CdiI-family-contact-dependent-growth-inhibition-immunity-protein
LTAIDHLYPPHILPLDTDNETLGTTVLQALANSRTFVYDSPEDQDFFDTEKIRQRYEDWVAKLCGNLGYKTRRALFKNMMSVDIWLHNGCLKISPSRHVKLEAWNAIDADDVILSLDNSPEEIGAGLKLALSHCR
>NZ_FFCX01000006.1|WP_017201199.1|32484_32595_-|hypothetical-protein
MFHGLKRTTALPLSGSAVLSAARMFGRHILTLEQKI
>NZ_FFCX01000006.1|WP_002225078.1|32594_33812_-|aspartate-kinase
MALIVHKYGGTSVGSPERIKNVAKRVAKARAEGHDIVVVVSAMSGETNRLVALAHEMQEHPDPRELDVVLATGEQVTIGLLAMALKDIGVDAKSYTGWQVALKTDTAHTKARIESIDDEKMRADLTAGKVVIVAGFQGISSEGDISTLGRGGSDTSAVALAAALKADECQIYTDVDGVYTTDPRVVPEARRMDTVTFEEMIELASLGSKVLQIRSVEFAGKYKVRLRVLSSLQDGGNGTLITFEEDDNMERAAVTGIAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLIDEKYMELATRVLHKAFNLG
>NZ_FFCX01000006.1|WP_002225077.1|34011_34740_-|ribonuclease-PH
MPDYIRISRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEYGMLPASTASRMLREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGTRTASITGAFVALQIAVGKLVSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALSAA
>NZ_FFCX01000006.1|WP_002244191.1|34821_35286_-|universal-stress-protein
MYKHLVVAVDGSETSINALKHAAELAGVNGARLTLVHVANPAEYMALAPEFLQHESYEAAAVAQGNEVLDAAERTAQELGVENTVKHLLVANKGAREMAQDLVDYADENGADLLVLGTHGRTGLMHLLMGSFAETVMRQSHLPLLIIRSKAEEA
>NZ_FFCX01000006.1|WP_002225075.1|35502_36279_+|tRNA-threonylcarbamoyladenosine-dehydratase
MSDNALTSSRRFGGIARLYGDSALAHFSQAHVCVVGVGGVGSWAVEALARTGIGRLTLIDLDNVAESNVNRQLHALTGDFGKAKVTALRERITQINPQCEVFEIEDFVTEDNLPEYFGKGFDFVIDAIDQVRVKAAMAAYFVERKQPFVLSGGAGGQKNPALIQTADLSRVTHDPLLANLRYTLRKRYGFSRDTKANMRVPCVYSTENIVPPQSREACSADAAPQGLSCAGYGASMLVTASFGLYCAQAAVEHIADKK
>NZ_FFCX01000006.1|WP_002238123.1|36416_36944_+|hypothetical-protein
MEFVNNLVIFSFLLLMLIPIFFVVYGIYHKIRYRKICILRTSFILLVVILCSMYYIYCRYLDQQKVAYYCIDEQCISIVHLYKDYGINSPTYARIYAGKILFRFQVRAKNYAELLMEDDISISKKILGNKFIIYGSLPVIYGNVDNIEVKEATGYIDRSSTDYIVSRNLKFRHLY
>NZ_FFCX01000006.1|WP_002225074.1|36940_37228_-|hypothetical-protein
MWSGRCSDGIITAFKCKCFEKEQVVNTVLGVLMLVFLNRQLDCRLQVVGHQTGMPVQIAYGFFFQILETFIVAFVFREFDDAPYILTALLLKPLN
>NZ_FFCX01000006.1|WP_002225073.1|37297_38152_+|segregation/condensation-protein-A
MPPIPAPSAPSEHTVAWVFGQPVTDLPQDLFIPPDALKVVLGSFQGPLDLLLYLIRKQNIDVLDIPMVKITEQYLHYIAQIETYQFDLAAEYLLMAAMLIEIKSRLLLPRTETVEDEEADPRAELVRRLLAYEQMKLAAQGLDALPRAGRDFAWAYLPLEIAVEAKLPEVYITDLTQAWLGILSRAKHTRSHEVIKETISVRAQMTAILRRLNGHGICRFHDLFNPKQGAAYVVVNFIALLELAKEGLVRIVQEDGFGEIRISLNHEGAHSDGISGTRGGRDVF
>NZ_FFCX01000006.1|WP_002225072.1|38192_39401_+|nicotinate-phosphoribosyltransferase
MTGIIHSLLDTDLYKFTMLQVVLHQFPQTHSLYEFRCRNASTVYPLADIREDLEAELDALCQLRFTHDELGYLRSLRFIKSDFVDYLELFQLQRRFVEIGTDDKDRLNIRIEGPMIQAMFFEIFILAIVNELYFRRLETPAVIEEGERRLQAKAARLKEIAAAQNPDEPPFLISDFGTRRRYKLAWQEHVIRTLLEAAPGIVRGTSNVFLAKKLGITPIGTMAHEFLQAFQALDVRLRNFQKAALESWVHEYRGDLGVALTDVVGMDAFLRDFDLYFAKLFDGLRHDSGDPYVWGDKAYAHYQKLKIDSRTKMLTFSDGLDIERSWALHQYFKDRFKTGFGIGTNLTNDMGHTPLNIVLKLVECNGQSVAKLSDSPGKTMTNNSTFLAYLRQVFDVPEPETP
>NZ_FFCX01000006.1|WP_002225071.1|39492_41211_+|arginine--tRNA-ligase
MNLHQTVEHEAAAAFAAAGIADSPIVLQPTKNAEHGDFQINGVMGAAKKAKQNPRELAQKVAEALADNAVIESAEVAGPGFINLRLRPEFLAQNIQTALNDARFGVAKTDKPQTVVIDYSSPNLAKEMHVGHLRSSIIGDSISRVLAFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKDNAAFELADLEQFYRAAKVRFDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPEDVAGESKYNDDLQPVVDDLVQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLYASTDLACLRYRIGRLKADRLLYVVDHRQALHFEQLFTTSRKAGYLPENVGAAFIGFGTMMGKDGKPFKTRSGDTVKLVDLLTEAVERATALVKEKNPELGADEAAKIGKTVGIGAVKYADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYTRVQSVFRKAGEWDANAPTVLTEPLEKQLAAELLKFEDVLQSVADTAYPHYLAAYLYQIATLFSRFYEACPILKAEGASRNSRLQLAKLTGDTLKQGLDLLGIDVLDVM

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Crispr_ID: NZ_FFCX01000006_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_FFCX01000006_2

64884-65038

Orphan

Consensus_repeat	Method
CCGCCGCAACGCGACCTCGCTGCAATTAAGCCGCTGCGCCAACATCGCCGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_FFCX01000006_2

>merge|NZ_FFCX01000006|2|64884-65038|CRISPRCasFinder
CCGCCGCAACGCGACCTCGCTGCAATTAAGCCGCTGCGCCAACATCGCCGACCGGACTGGGCTGGATGCACTGGGTGGTCGCCGACATTCCCGCCGATGTCCGCCGCCGCAACGCGGCCTCGCTGCAATTAAGCCGCTGCGCCAACATCGCCGAC

>NZ_FFCX01000006|2|1|64884-65038|CRISPRCasFinder
CCGCCGCAACGCGACCTCGCTGCAATTAAGCCGCTGCGCCAACATCGCCGAC	CGGACTGGGCTGGATGCACTGGGTGGTCGCCGACATTCCCGCCGATGTCCG
CCGCCGCAACGCGGCCTCGCTGCAATTAAGCCGCTGCGCCAACATCGCCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_FFCX01000006.1\|WP_061706029.1\|54479_54950_+\|DUF1841-family-protein	unknown	unknown	gnl\|CDD\|370177
NZ_FFCX01000006.1\|WP_002220565.1\|67937_68447_-\|hemerythrin-domain-containing-protein	unknown	unknown	gnl\|CDD\|213983
NZ_FFCX01000006.1\|WP_002219020.1\|55020_55848_-\|squalene-synthase-HpnC	unknown	unknown	gnl\|CDD\|274592
NZ_FFCX01000006.1\|WP_002225051.1\|74780_76709_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_FFCX01000006.1\|WP_002225052.1\|72821_74594_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_FFCX01000006.1\|WP_002225055.1\|68541_69093_-\|azurin	unknown	unknown	gnl\|CDD\|225781
NZ_FFCX01000006.1\|WP_002229696.1\|52547_54389_-\|protein-disulfide-reductase-DsbD	unknown	unknown	gnl\|CDD\|226685
NZ_FFCX01000006.1\|WP_002212871.1\|55919_56402_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_FFCX01000006.1\|WP_002225058.1\|66025_67171_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NZ_FFCX01000006.1\|WP_009344735.1\|72691_72844_+\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000006.1\|WP_002225054.1\|69373_69796_-\|DUF721-domain-containing-protein	unknown	unknown	gnl\|CDD\|377496
NZ_FFCX01000006.1\|WP_061706031.1\|58828_60919_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|273608
NZ_FFCX01000006.1\|WP_002229688.1\|61391_61838_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NZ_FFCX01000006.1\|WP_061706030.1\|57280_58648_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_FFCX01000006.1\|WP_002234076.1\|56874_57171_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_FFCX01000006.1\|WP_002212857.1\|69089_69230_-\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000006.1\|WP_002239881.1\|61892_62903_-\|lipopolysaccharide-heptosyltransferase-II	unknown	unknown	gnl\|CDD\|274026
NZ_FFCX01000006.1\|WP_002225053.1\|69926_72677_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_FFCX01000006.1\|WP_002225057.1\|67283_67904_-\|diadenosine-tetraphosphatase	unknown	unknown	gnl\|CDD\|371245
NZ_FFCX01000006.1\|WP_002225060.1\|63486_64296_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427

Protein	Function_ID	Function_description	E-value
NZ_FFCX01000006.1\|WP_061706029.1\|54479_54950_+\|DUF1841-family-protein	gnl\|CDD\|370177	pfam08897, DUF1841, Domain of unknown function (DUF1841). This family of proteins are functionally uncharacterized.	5.03669e-64
NZ_FFCX01000006.1\|WP_002220565.1\|67937_68447_-\|hemerythrin-domain-containing-protein	gnl\|CDD\|213983	cd12108, Hr-like, Hemerythrin-like domain. Hemerythrin (Hr) like domains have the same four alpha helix bundle and a similar, but slightly different active site structure than hemerythrin. They are non-heme diiron binding proteins mainly found in bacteria and eukaryotes. Like Hr, they may be involved in oxygen transport or like human FBXL5 (F-box and leucine-rich repeat protein 5), a member of this group, play a role in cellular iron homeostasis.	3.69281e-12
NZ_FFCX01000006.1\|WP_002219020.1\|55020_55848_-\|squalene-synthase-HpnC	gnl\|CDD\|274592	TIGR03464, HpnC, squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.	9.34322e-138
NZ_FFCX01000006.1\|WP_002225051.1\|74780_76709_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_FFCX01000006.1\|WP_002225052.1\|72821_74594_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_FFCX01000006.1\|WP_002225055.1\|68541_69093_-\|azurin	gnl\|CDD\|225781	COG3241, COG3241, Azurin [Energy production and conversion].	3.84418e-76
NZ_FFCX01000006.1\|WP_002229696.1\|52547_54389_-\|protein-disulfide-reductase-DsbD	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	0
NZ_FFCX01000006.1\|WP_002212871.1\|55919_56402_-\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	7.29573e-52
NZ_FFCX01000006.1\|WP_002225058.1\|66025_67171_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_FFCX01000006.1\|WP_002225054.1\|69373_69796_-\|DUF721-domain-containing-protein	gnl\|CDD\|377496	pfam05258, DUF721, Protein of unknown function (DUF721). This family contains several actinomycete proteins of unknown function.	1.39021e-07
NZ_FFCX01000006.1\|WP_061706031.1\|58828_60919_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.47599e-75
NZ_FFCX01000006.1\|WP_002229688.1\|61391_61838_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	9.91066e-78
NZ_FFCX01000006.1\|WP_061706030.1\|57280_58648_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.88148e-128
NZ_FFCX01000006.1\|WP_002234076.1\|56874_57171_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	1.93386e-11
NZ_FFCX01000006.1\|WP_002239881.1\|61892_62903_-\|lipopolysaccharide-heptosyltransferase-II	gnl\|CDD\|274026	TIGR02195, ADP-heptose--LPS_heptosyltransferase_2, lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.19516e-167
NZ_FFCX01000006.1\|WP_002225053.1\|69926_72677_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_FFCX01000006.1\|WP_002225057.1\|67283_67904_-\|diadenosine-tetraphosphatase	gnl\|CDD\|371245	pfam10786, G6PD_bact, Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49). This family is conserved in Firmicutes and Proteobacteria. Several members are annotated as being glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49) but this could not be confirmed.	7.59882e-106
NZ_FFCX01000006.1\|WP_002225060.1\|63486_64296_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	1.48043e-61

>NZ_FFCX01000006.1|WP_002225060.1|63486_64296_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MAKIGDFAVKSMIGIRSKQMITLPSLNNLPSKWDEIRHWLESRVFECGVMPHPNLTECEAKQFERDFWDNIGCAPEEYVRIRRAIRLLEARYPDSLNELVCAAIATPLGEMLAVFGSRGLCLLEFVGQKHLEQEIAAVQKALRGRFVFREDERTQLLRQELDLYFKGRLKTFATPLEQIGTEFQKQAWDALLAIPYGETRSYKEQAQRLGNPKAVRAVAAANGQNKVSILIPCHRVIGSDGKLTGYAGGLNRKQFLLALEHGEVQTALF
>NZ_FFCX01000006.1|WP_002239881.1|61892_62903_-|lipopolysaccharide-heptosyltransferase-II
MSIKILIISPSWIGDCVMTQPLFRRLKELHPGCTIDVFAPKWSMAVFERMPEVNEILENPFGHGALELKRRWRVGRDLGRRGYDQVIVLPGSLKSAVIALATGIAKRTGYVGESRYFLLNDIRRLDKERLPLMVDRYTALAHPSQEDFDGHSGFPEFSIDERRREISVETFGLDIGKPVLAFCPGAEFGPAKRWPTRYFAELGKHYSAAGWQVWLFGSQKDDEIAEEINCLSDGMCVNLCGKTDLSQAMDLLSLADTVVCNDSGLMHLAAALGRKVVAVYGSSSPTHTPPLSDRAKIVSLHLECSPCFKRECPLGHTDCLNRLYPEKIVQAVEEAV
>NZ_FFCX01000006.1|WP_002229688.1|61391_61838_-|SsrA-binding-protein-SmpB
MAIANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESYIYWKKDAFYLVGCHITALPTASTHIKPDAVRPRKLLLNQSEINKLIGKTERAGYTIVPLDLHFSRGKIKMEIGLAKGKKQHDKRQSMKEADWKREKQRLIKHTR
>NZ_FFCX01000006.1|WP_061706031.1|58828_60919_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MAVDYVYDKTKLTDDEITRLKKLRDRNSEYWKDDLFRIDIPKETGLRHDIEGAAKGNFSYPIFYIPTDDKPIDPDKKISFFDSPYTPGYTAAFVQGFGVKERNGYTEEQAKKYIDELRTKLKTAPIIAAAQLGYFQLNDGSGDSWLYNYYRNDIFNSYGEIKHSNINSEILAVGNVADLYYKHFIRNPFIYVDWSIFSLPLPRLKVSENSHVIGQIIHLYRLDLEDSLWEPRWDSDVSYLNLFNSHIRFNTKNDSLIVGESRIRPTPDNALNTEKYLKSQFSDTGYHSDIGNNYIHFAYDLSEREADKPVLTLKSKVKGKTAIVFEEKALNNLKNLTYRQLIKTETDVEPNAFYLLEEYKKGRYRLFLRQCPNGFCIGVEKLAIPTHLVASYAQQAQAANTLFSLRLNDKNSDIFDRTLPRKGLWLRVIDGHSNQWVQGKTAPVEGYRKGVQLGGEVFTWQNKSNQLSIGLMVGQAEQRSTFRNPDTDNLTTGNVKGFGAGVYATWHQLQDKQTGAYADSWVQYQRFRHRINTEDATERFTSKGITASIEAGYNALLAEHFTKKGNSLRVYLQPQAQLTYLGVNGKFSDSENAHVNLLGSRQLQTRVGVQAKAQFSLYKNIAIEPFAAVNALYHNKPFGVEIDGERRVINNKTAIESQLGVAVKIKSHLTLQASFNRQTSKYHQAKQGALNLQWTF
>NZ_FFCX01000006.1|WP_061706030.1|57280_58648_+|FAD-binding-oxidoreductase
MPDLHTEFSRLLPADEIAELSPTLLKDQRNRFTSAPDIILQPRSVESVQTIMRFCYKHRIPVTPQGGNTGLCGAAVSENGVLLNLSKLNRIRSINLSDNCITVEAGSVLQTVQQAAEASNRLFPLSLASEGSCQIGGNIACNAGGLNVLRYGTMRDLVIGLEVVLPNGELVSHLHPLHKNTTGYDLRHLFIGSEGTLGIITAATLKLFARPSDKATAWVGIPDIESAVRLLTETQAHFAERLCSFELIGRFAAELSSEFSKFPLPTHSEWHILLELTDSLPDSNLDDRLVEFLYKKGFTDSVLAQSEQERIHMWALRENISASQRKLGTSIKHDIAVPIGRVADFVRRCAKDLEQNFKGIQIVCFGHLGDGSLHYNTFLPEILSNEVYRYENDINDAVYRNVLACNGTIAAEHGIGIIKKQWLDKVRTPAEIALMKSIKQHLDPYNIMNPGKLLP
>NZ_FFCX01000006.1|WP_002234076.1|56874_57171_+|hypothetical-protein
MKKSLFAAALLSLVLAACGGEKAAEAPATEAPAAEAPATEAPAAEAPAAEAPAAEAPATEAPAAEAPAAEAAATEAPAAEAAASEAPAAEAPAAEAAK
>NZ_FFCX01000006.1|WP_002212871.1|55919_56402_-|peptidylprolyl-isomerase
MAIVKNSVVSLHYEMYDANNQLLDKTEEPIAYLHGGYDGIFPLVEEALHGKDAGDTVDVALSPDDAFGEQDPELVRIEDAGVFPVEVEVGMMFEADDPETGDVVVYRVTDVADGKAVVDGNHPLAGMKIRFKATVESVRDASDEEIAHGHVHGPHGHHHH
>NZ_FFCX01000006.1|WP_002219020.1|55020_55848_-|squalene-synthase-HpnC
MDGEGMSVGHYENFPVGSLILPRRLRKPVHAVYAFARTADDMADEGSMPSEARLAGLEGLRRELDVLASGGRSAHPLIARLDAEAVVPFGLDLQPFYDLLSAFSQDVVKTRYGNFGELADYCRRSANPVGRIMLALYGKTDAVCVAQSDGICTALQLVNFWQDVAVDWQKGRVYIPQDDLLKFGVSEGQIAEGRADAAFQRLMAYECRRAFRMLKAGSPLARELKGRIGLELRMIVLGAQLILQKLDACRYDVFAQRPVLDKKDWLIMLKRALWK
>NZ_FFCX01000006.1|WP_061706029.1|54479_54950_+|DUF1841-family-protein
MYDVNTHDVRRFFAHVWQQRLNPLQLSALEQKALRIVEAHPEYHRYLERIEDHLDTDWLPENGESNPFLHMSLHLSVQEQAGIDQPHGIRAIHDTLCAKRGWLEAEHEMMEALAETLWTAQRYGTGLDVNFYMTRLRKLIGLGAEDQARLNPHEIA
>NZ_FFCX01000006.1|WP_002229696.1|52547_54389_-|protein-disulfide-reductase-DsbD
MQTNYLSETDSIMKKLICLFAVFLMLCGRAFALDANDLLPPEKAFVPELAVADDGVNVRFRIADGYYMYQAKIVGKTDPADLLGQPSFSKGEEKEDEFFGRQTVYHHEAQVAFPYAKAVGEPYKLVLTYQGCAEAGVCYPPVDTEFDISGNGTYHPQTDEPASAKDRFLQPSSQNGSGALPPPKGDEGGDSRFKLSWDTLNANLLAFFLAGLGLSFTACMYPLLPIVSSIVVGDKKAGKARAFVLSVVYVQGLALTYTLVGIVAGLTGALLTVWLQQAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLSGGKIVSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPLIAIGTFGGHILPRAGDWMNAVKYAFGFILLAVAVYLATPHLPYYLVVALYTLLMLVPACMLLVNGRRQKRRPKAVAFALGGILLIGGAWFGWQGANGKTTALHHFLTLNPPAEAGKSSEHGKMFADTAALKAAMDTALKEHPDKPVVLDFYADWCISCKEMAAYTLNQPEVHQAVDMERFFQIDVTANTPEHQALLKEYGLFGPPGVFVVRSDGSRSEPLLGFVKADKFIEWYEQNR
>NZ_FFCX01000006.1|WP_002225058.1|66025_67171_-|succinyl-diaminopimelate-desuccinylase
MTETQSLELAKELISRPSVTPDDRDCQKLLAERLHKIGFAAEELHFGDTKNIWLRRGTKAPVVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMIKNGRRGSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNINGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYDLQWSCSGQPFLTQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAIAQELIELGPSNATIHQINENVRLNDIPKLSAVYEGILARLLAGNAV
>NZ_FFCX01000006.1|WP_002225057.1|67283_67904_-|diadenosine-tetraphosphatase
MLTPKSCDLFNIPFFQFSQLKKYQPESIPQIKADYKENWQIWQQLIQQVAAELGAPFAPPHIERWCNGWQVRAHFFAYFKYEQYKNSAAILSILLNRRRLSVSLDWHCYKADVSPIALPDYNRWLDNFDTEKYASFDMWHGAESEYDDYRTVAQQNESDRKLQNDEDFFCIGKHIERDDLGRQDVAKWIAETVEDLLPLYEACHGK
>NZ_FFCX01000006.1|WP_002220565.1|67937_68447_-|hemerythrin-domain-containing-protein
MNPFETKSVTFAEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDELLRQHIGLHDNWAAVSAEFAKLEADNAYVPDEEAFKRFVAGYDVHLAIEEPLFDMGNTFIPKEKLTEIGEIMAARRRK
>NZ_FFCX01000006.1|WP_002225055.1|68541_69093_-|azurin
MKAYLALISAAVIGLAACSQEPAAPAAEATPAAEAPASEAPAAEAAPADAAEAPAAGNCAATVESNDNMQFNTKDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGEEASLTLDPAKLADGEYKFACTFPGHGALMNGKVTLVD
>NZ_FFCX01000006.1|WP_002212857.1|69089_69230_-|hypothetical-protein
MKFVAKCRSETSVCATRRNLFQGFVNGGCTLISVKPNIILSIGDLL
>NZ_FFCX01000006.1|WP_002225054.1|69373_69796_-|DUF721-domain-containing-protein
MNLEQLGRRDALLSGLLKQAGQWRRLDAAVKKLLPANLHPHFQTACIEDGRLVLLAANNMAASRLKMIAPSVLPQLAGLDASIRSVSVRLVPKPEKPPKTNTLHLSKAALESFGSAAAKLEKRHPELAEALANLVRRHGA
>NZ_FFCX01000006.1|WP_002225053.1|69926_72677_+|preprotein-translocase-subunit-SecA
MLTNIAKKIFGSRNDRLLKQYRKSVARINALEEQMQALSDADLQAKTAEFKQRLADGQTLDGILPEAFAVCREASRRTLGMRHFDVQLIGGMVLHDGKIAEMRTGEGKTLVATLAVYLNALAGKGVHVVTVNDYLASRDAGIMEPLYNFLGLTVGVIISDMQPFDRQNAYAADITYGTNNEFGFDYLRDNMVTDQYDKVQRELNFAVVDEVDSILIDEARTPLIISGQADDNIQLYQIMNTVPPHLVRQETEEGEGDYWVDEKAHQVILSEAGHEHAEQILTQMGLLAENDSLYSAANIALMHHLMAALRAHSLFHKDQHYVIQDGEIVIVDEFTGRLMSGRRWSEGLHQAVEAKEGVEIKRENQTLASITFQNYFRLYTKLSGMTGTADTEAFEFQSIYNLETVIIPTNRPVQRKDFNDQIFRSAEEKFEAVVKDIEECHKRGQPVLVGTTSIENSELVSKLLTQAGLPHNVLNAKEHEREALIVAQAGKVGAITVATNMAGRGTDIVLGGNLKHQTDAIRADETLSDEEKQAQIAALEDGWQAEHDKVMEAGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSFEDPLLRLFALDRAAAILNRLAPERGVAIEHNLLTRQIEGAQRKVEGRNFDMRKQVLEYDDVANEQRKVIYSQRNEILTSKDISDLMQEIRSDVVSDLVDTYMPPDSMEEQWDIPTLENRLAAEFRLHEDIQSWLKADNAIDGQDIKERLIERIENEYAAKTELVGKQAMADFERNVMLQVIDNQWREHLAAMDYLRQGIHLRSYAQKNPKQEYKREAFTMFQDLWNGIKFHIASLLTSVQIEQNPVAVVEEQPIGNIQSIHSESPDMEELLGQSQTDLVTEAFNPDGTDFSPEALEARGQIVHRNDPCPCGSGLKYKQCHGKLA
>NZ_FFCX01000006.1|WP_009344735.1|72691_72844_+|hypothetical-protein
MPSEHPAPVSDGILPEPPHPTAIPKNPDFVPSVPKTDIPSAPHHDSIRLH
>NZ_FFCX01000006.1|WP_002225052.1|72821_74594_+|DNA-primase
MIPSDFIDELLAKTDIVDIIDEQVPLKKGGANYMACCPFHKEKTPSFSVSPTKQFYHCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVHGQNDNPEVRAERKKKQQTLEETTAAAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLTQVFQPYPNTALVDTGMVIDNEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDSKPKYLNSPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQITAPALAYLLKQRLSELVGIDPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMLTLVQRQIRSLLINPDWAAYIDLPDYLALDGDFACLANLAESIKNHAAVPETAQVLEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIETLKQKSLQSGLNESEKKLLLSLLTAKQN
>NZ_FFCX01000006.1|WP_002225051.1|74780_76709_+|RNA-polymerase-sigma-factor-RpoD
MSRNQNHEEYQDDTRPLSIEEQRARLRQLIIMGKERGYITYSEINDALPDDMSDADQIDNIVSMISGLGIQVTEHAPDAEDILLSDNAAVTDDDAVEEAEAALSSADSEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALKNMVQAISACPGSIAEILELIEKIRKDEIRVDEVVEAIIDPNEVLLNELGLGHLETTAPEKPSNDNSDENEDDEESEEDADEISAANLAELKQKVIGHFAQIEKDYKKMIGRLEKHHSRHKDYLAYRDAIANKLLEVRFATRQIDSLSSSLRGKVENIRKLEREIRDICLDRVHMERDYFIQNFLPEITNLEWIEEEIAKGRVWSDALDRFRHAILEKQTELADMEKETRISIEELKEINKNMVSSEKETAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQETGEEPDSAKLAELMQMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDANNVAPADAAMYTSLHEVTKEILESLTPREAKVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPTRSDRLRSFLDSEDSKL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_FFCX01000006_1	1.2\|31363\|59\|NZ_FFCX01000006\|PILER-CR	31363-31421	59	NZ_FFCX01000002.1	117363-117421	1.0
NZ_FFCX01000006_1	1.2\|31363\|59\|NZ_FFCX01000006\|PILER-CR	31363-31421	59	NZ_FFCX01000006.1	32211-32269	1.0
NZ_FFCX01000006_1	1.2\|31363\|59\|NZ_FFCX01000006\|PILER-CR	31363-31421	59	NZ_FFCX01000016.1	30281-30339	1.0

1. spacer 1.2|31363|59|NZ_FFCX01000006|PILER-CR matches to position: 117363-117421, mismatch: 0, identity: 1.0

ccgtcattcccgcgcaggcgggaatctagtccgttcggtttcggtttttttggctagtg	CRISPR spacer
ccgtcattcccgcgcaggcgggaatctagtccgttcggtttcggtttttttggctagtg	Protospacer
***********************************************************

2. spacer 1.2|31363|59|NZ_FFCX01000006|PILER-CR matches to position: 32211-32269, mismatch: 0, identity: 1.0

ccgtcattcccgcgcaggcgggaatctagtccgttcggtttcggtttttttggctagtg	CRISPR spacer
ccgtcattcccgcgcaggcgggaatctagtccgttcggtttcggtttttttggctagtg	Protospacer
***********************************************************

3. spacer 1.2|31363|59|NZ_FFCX01000006|PILER-CR matches to position: 30281-30339, mismatch: 0, identity: 1.0

ccgtcattcccgcgcaggcgggaatctagtccgttcggtttcggtttttttggctagtg	CRISPR spacer
ccgtcattcccgcgcaggcgggaatctagtccgttcggtttcggtttttttggctagtg	Protospacer
***********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

21. NZ_FFCX01000020

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_FFCX01000020_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_FFCX01000020_1

57-161

Orphan

I-E

Consensus_repeat	Method
AACGGACTGGATTCCCGCCTGCGCGGGAATGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_FFCX01000020_1

>merge|NZ_FFCX01000020|1|57-161|CRISPRCasFinder
AACGGACTGGATTCCCGCCTGCGCGGGAATGACGAAGTGGAAGTTACCCGAAACTTAAAACAAGCGAAACCGAACGGACTAGATTCCCGCCTGCGCGGGAATGAC

>NZ_FFCX01000020|1|1|57-161|CRISPRCasFinder
AACGGACTGGATTCCCGCCTGCGCGGGAATGAC	GAAGTGGAAGTTACCCGAAACTTAAAACAAGCGAAACCG
AACGGACTAGATTCCCGCCTGCGCGGGAATGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_FFCX01000020.1\|WP_002225824.1\|1195_2023_-\|glycosyltransferase-family-25-protein	unknown	unknown	gnl\|CDD\|225843
NZ_FFCX01000020.1\|WP_002225828.1\|7006_7429_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796
NZ_FFCX01000020.1\|WP_002219871.1\|7439_8837_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_FFCX01000020.1\|WP_002233110.1\|1088_1184_-\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000020.1\|WP_002225830.1\|9774_11322_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NZ_FFCX01000020.1\|WP_021437851.1\|2064_3111_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_FFCX01000020.1\|WP_061706018.1\|8874_9750_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NZ_FFCX01000020.1\|WP_002225823.1\|204_1047_-\|glycosyltransferase-family-25-protein	unknown	unknown	gnl\|CDD\|225843
NZ_FFCX01000020.1\|WP_002244319.1\|3127_5191_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_FFCX01000020.1\|WP_002218046.1\|5696_6602_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473

Protein	Function_ID	Function_description	E-value
NZ_FFCX01000020.1\|WP_002225824.1\|1195_2023_-\|glycosyltransferase-family-25-protein	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	1.94754e-84
NZ_FFCX01000020.1\|WP_002225828.1\|7006_7429_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	7.55061e-50
NZ_FFCX01000020.1\|WP_002219871.1\|7439_8837_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_FFCX01000020.1\|WP_002225830.1\|9774_11322_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NZ_FFCX01000020.1\|WP_021437851.1\|2064_3111_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.42822e-38
NZ_FFCX01000020.1\|WP_061706018.1\|8874_9750_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	9.202e-144
NZ_FFCX01000020.1\|WP_002225823.1\|204_1047_-\|glycosyltransferase-family-25-protein	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	5.03894e-85
NZ_FFCX01000020.1\|WP_002244319.1\|3127_5191_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_FFCX01000020.1\|WP_002218046.1\|5696_6602_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0

>NZ_FFCX01000020.1|WP_002225823.1|204_1047_-|glycosyltransferase-family-25-protein
MQNHVISLASAAERRAHIAATFGVRGIPFQFFDALMPSEELNRMMAELVPGLAKQHLLSEVEKACFMSHAVLWKQALDEGLPYVAVFEDDVLLGKDAEKFLAEDTWLEERFDKDSAFIVRLETMFAKVIVRPDKVLNYENRSFPLLESEHWGTAGYIISREAMRFFLERFAVLPAEWIKAVDWMMFTYFFDKEGMPVYQVNPALCTQELHYAKFLSKNSMLGSDLEKDREQERRHRRSLKVMFDLKRALGKFGREKKKRMERQRQAELEKAYGRRVISFK
>NZ_FFCX01000020.1|WP_002233110.1|1088_1184_-|hypothetical-protein
MDIVFAADGRMRRLFTLRQYFGILRRLLKNR
>NZ_FFCX01000020.1|WP_002225824.1|1195_2023_-|glycosyltransferase-family-25-protein
MQNHVISLASAAERRAHIADTFGRHGIPFQFFDALMPSERLEQAMAELVPGLSAHPYLSGVEKACFMSHAVLWKQALDEGLPYITVFEDDVLLGEGAEKFLAEDAWLQERFDPDTAFIVRLETMFMHVLTSPSGVADYCGRAFPLLESEHWGTAGYIISRKAMRFFLDRFAALPPEGLHPVDLMMFSDFFDREGMPVCQLNPALCAQELHYAKFHDQNSALGSLIEHDRLLNRKQQRRDSPANTFKHRLIRALTKISREREKRRQRREQFIVPFQ
>NZ_FFCX01000020.1|WP_021437851.1|2064_3111_-|glycosyltransferase-family-2-protein
MPSEAFRRHRAYRENKLQPLVSVLICAYNVEKYFAQSLAAVVNQTWRNLDILIVDDGSTDGTLAIAQRFQEQDGRIRILAQPRNSGLIPSLNIGLDELAKSGGGEYIARTDADDIAAPDWIEKIVGEMEKDRSIIAMGAWLEVLSEEKDGNRLARHHEHGKIWKKPTRHEDIADFFPFGNPIHNNTMIMRRSVIDGGLRYNTERDWAEDYQFWYDVSKLGRLAYYPEALVKYRLHANQVSSKYSIRQHEIAQGIQKTARNDFLQSMGFKTRFDSLEYRQIKAVAYELLEKHLPEEDFERARRFLYQCFKRTDTLPAGAWLDFAADGRMRRLFTLRQYFGILHRLLKNR
>NZ_FFCX01000020.1|WP_002244319.1|3127_5191_-|glycine--tRNA-ligase-subunit-beta
MMTQTLLIELLTEELPPKALNNLGNHFAASVAEGLEKAQLVDGAAEFTAYASPRRLAVQVKNVKAVQADQKIVKKGPAVANAMKDGAPTKALEGFARGAGAKIEDLTIVHDGKQDVYAYEYVQIGKPLGGLLEDIINQAVKKLPIPKVMRWGSSTFTFVRPVHGLVVLHGGDIVNVSVLGLQSGNKTLGHRFLSDGEITIENADSYAAQMREQGKVVASFAERKAAIQTVLEGQARRLNATAAADEALLDEVTALVEWPVVLEAGFEEHFLAVPQECLILTMQQNQKYFPLLDQNGKLMNRFLLVSNLQTEDPSHIIQGNERVLRARLSDAEFFYKQDQKATLESRLPKLTNVVYHNKIGSQAERIERLQSIAAHIAKALGADAAAAERAARLAKADLVTEMVGEFPELQGTMGKYYARLDGETEEITEAVEQHYQPRFAGDNLPEGKIAAAVALADKLETLVGIWGIGLIPTGDKDPYALRRAALGILRMLMQYGLDVNELIQTAFNSFPQGLLNEKTPSETADFMQARLAVLLQNDYPQDIVAAVLAKQPRRLDDLTAKLQAVAAFKQLPEAAALAAANKRVQNLLKKADAELGAVNESLLQQDEEKALFAAAQGLQPKIAAAVAEGNFQTALSELASVKPQVDAFFDGVMVMAEDAAVKQNRLNLLNRLAEQMNAVADIALLGE
>NZ_FFCX01000020.1|WP_002218046.1|5696_6602_-|glycine--tRNA-ligase-subunit-alpha
MLTFQQIIFKLQTFWADKGCTVIQPFDMEVGAGTSHPATCLRALGPEPWFAAYVQPSRRPKDGRYGDNPNRLQHYYQFQVALKPAPANIQDLYLDSLRELGIDPKVHDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGIDCTPVLGEITYGIERLAMYLQGVENVYDLVWAKTLDGNTVTYGDVYHQNEVEQSTYNFEYSDADWLLRQFNDYEAQAKRLLAEENAALALPAYELVLKAGHTFNLLDARGAISVTERATYIGRIRALSRAVAQKYVESREKLGFPLMKANAA
>NZ_FFCX01000020.1|WP_002225828.1|7006_7429_-|F0F1-ATP-synthase-subunit-epsilon
MSIMQVEVVSSEQKIYSGEATFIVVPTVQGELGIYPRHEPIMSLVRPGALRLTVPGEDKEVLVAVSGGVLEVQPDKVTVLADVAVRSAEMDRARAEEAKKAAEAGISQAKDDKALAEAHKVLAAAIAQLKTLDYIRSHKK
>NZ_FFCX01000020.1|WP_002219871.1|7439_8837_-|F0F1-ATP-synthase-subunit-beta
MSQGKIVQIIGAVVDVEFPRDMIPRVYDALKLDENGLTLEVQQLLGDGVVRAIAMGSSDGLKRGMTVSNTGAPITVPVGKGTLGRIVDVLGTPVDEAGPIDTDKSRAIHQAAPKFDELSSTTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDENGKGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTQTGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPMVLGQEHYDVARGVQSTLQKYKELRDIIAILGMDELSDEDKLTVMRARKIQRFLSQPFHVAEVFTGSPGKYVALRDTIAGFKAILNGEYDHLPEQAFYMVGSIEEAVEKAKTLN
>NZ_FFCX01000020.1|WP_061706018.1|8874_9750_-|F0F1-ATP-synthase-subunit-gamma
MAVGKEILTKIRSVQNTQKITKAMQMVSTSKMRKTQERMRLARPYAEKVRMVMSHLAQTNTDHGIPLLESHREIRRVGFILITSDKGLCGGLNANVLKKFLAQVQEYRNQGIEEEIVCFGSKGLMACQSMGLNVVASAVNLGDTPKMEMLLGPLTELFQRYEKHEIDRIHLVYSGFVNTMRQEPRMEVLLPIGENVIGDSAPKSPFSWEYRYEPTALAVLEYLVRRYLESVVYQALSDNMASEQAARMVAMKAATDNAGNAIKELRLVYNKSRQAAITTELSEIVAGAAAV
>NZ_FFCX01000020.1|WP_002225830.1|9774_11322_-|F0F1-ATP-synthase-subunit-alpha
MQLNPAEISDLIKAKIENLSVNAEVRTCGTVISVTDGIVRIHGLSDAMQGEMLEFPGNTFGLAMNLERDSVGAVVLGEYEHIKEGDTVTCTGRILEVPVGRELVGRVVDALGRPIDGKGPINTTLTAPIEKIAPGVIARKSVDQPMQTGLKAIDSMVPVGRGQRELIIGDRQTGKTAVALDAIVNQKGTGVICIYVAIGQKASSIANVVRKLEEHGAMEHTIVVAATASEAAALQYIAPYSGCTMGEFFRDRGEDALIVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAARVNEHEVEKLTNGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETDLFNAGIRPAINAGISVSRVGGAAQTKVIKKLGGGIRLALAQYRELAAFSQFASDLDEATRKQLEHGEVVTELMKQKQFSTLNTAEMALTLWAINNGSYSDVPVAKALAFESEFLSFVRTQHPEVLEAVNASGAMSDESEKTLEAAMKSFKSSYAYQA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_FFCX01000020_1	1.1\|90\|39\|NZ_FFCX01000020\|CRISPRCasFinder	90-128	39	NZ_FFCX01000002.1	116760-116798	0	1.0
NZ_FFCX01000020_1	1.1\|90\|39\|NZ_FFCX01000020\|CRISPRCasFinder	90-128	39	NZ_FFCX01000002.1	117042-117080	0	1.0
NZ_FFCX01000020_1	1.1\|90\|39\|NZ_FFCX01000020\|CRISPRCasFinder	90-128	39	NZ_FFCX01000006.1	31817-31855	0	1.0
NZ_FFCX01000020_1	1.1\|90\|39\|NZ_FFCX01000020\|CRISPRCasFinder	90-128	39	NZ_FFCX01000008.1	6015-6053	0	1.0
NZ_FFCX01000020_1	1.1\|90\|39\|NZ_FFCX01000020\|CRISPRCasFinder	90-128	39	NZ_FFCX01000008.1	6266-6304	0	1.0
NZ_FFCX01000020_1	1.1\|90\|39\|NZ_FFCX01000020\|CRISPRCasFinder	90-128	39	NZ_FFCX01000008.1	6572-6610	0	1.0
NZ_FFCX01000020_1	1.1\|90\|39\|NZ_FFCX01000020\|CRISPRCasFinder	90-128	39	NZ_FFCX01000013.1	49840-49878	0	1.0
NZ_FFCX01000020_1	1.1\|90\|39\|NZ_FFCX01000020\|CRISPRCasFinder	90-128	39	NZ_FFCX01000013.1	50417-50455	0	1.0
NZ_FFCX01000020_1	1.1\|90\|39\|NZ_FFCX01000020\|CRISPRCasFinder	90-128	39	NZ_FFCX01000059.1	6128-6166	0	1.0
NZ_FFCX01000020_1	1.1\|90\|39\|NZ_FFCX01000020\|CRISPRCasFinder	90-128	39	NZ_FFCX01000059.1	6351-6389	0	1.0
NZ_FFCX01000020_1	1.1\|90\|39\|NZ_FFCX01000020\|CRISPRCasFinder	90-128	39	NZ_FFCX01000059.1	6447-6485	0	1.0
NZ_FFCX01000020_1	1.1\|90\|39\|NZ_FFCX01000020\|CRISPRCasFinder	90-128	39	NZ_FFCX01000059.1	5876-5914	1	0.974
NZ_FFCX01000020_1	1.1\|90\|39\|NZ_FFCX01000020\|CRISPRCasFinder	90-128	39	NZ_FFCX01000061.1	37-75	0	1.0

1. spacer 1.1|90|39|NZ_FFCX01000020|CRISPRCasFinder matches to position: 116760-116798, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

2. spacer 1.1|90|39|NZ_FFCX01000020|CRISPRCasFinder matches to position: 117042-117080, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

3. spacer 1.1|90|39|NZ_FFCX01000020|CRISPRCasFinder matches to position: 31817-31855, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

4. spacer 1.1|90|39|NZ_FFCX01000020|CRISPRCasFinder matches to position: 6015-6053, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

5. spacer 1.1|90|39|NZ_FFCX01000020|CRISPRCasFinder matches to position: 6266-6304, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

6. spacer 1.1|90|39|NZ_FFCX01000020|CRISPRCasFinder matches to position: 6572-6610, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

7. spacer 1.1|90|39|NZ_FFCX01000020|CRISPRCasFinder matches to position: 49840-49878, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

8. spacer 1.1|90|39|NZ_FFCX01000020|CRISPRCasFinder matches to position: 50417-50455, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

9. spacer 1.1|90|39|NZ_FFCX01000020|CRISPRCasFinder matches to position: 6128-6166, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

10. spacer 1.1|90|39|NZ_FFCX01000020|CRISPRCasFinder matches to position: 6351-6389, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

11. spacer 1.1|90|39|NZ_FFCX01000020|CRISPRCasFinder matches to position: 6447-6485, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

12. spacer 1.1|90|39|NZ_FFCX01000020|CRISPRCasFinder matches to position: 5876-5914, mismatch: 1, identity: 0.974

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtagaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
*****.*********************************

13. spacer 1.1|90|39|NZ_FFCX01000020|CRISPRCasFinder matches to position: 37-75, mismatch: 0, identity: 1.0

gaagtggaagttacccgaaacttaaaacaagcgaaaccg	CRISPR spacer
gaagtggaagttacccgaaacttaaaacaagcgaaaccg	Protospacer
***************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

22. NZ_FFCX01000005

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr_ID: NZ_FFCX01000005.1|WP_042743676.1|39837_40188_+|anti-CRISPR-protein-AcrIIC3

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Acr_ID: NZ_FFCX01000005.1|WP_042743678.1|40233_40605_+|anti-CRISPR-protein-AcrIIC2

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_FFCX01000005.1|WP_042743676.1|39837_40188_+|anti-CRISPR-protein-AcrIIC3

39837_40188_+

116 aa aa

AcrIIC3

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR0119\|WP_042743676.1\|AcrIIC3\|II-C\|Verified\|Neisseria-meningitidis	1.0	1	1.0

NZ_FFCX01000005.1_40597_40807_+

Protein_id	Hit_Aca_id	Identity	Query_coverage	Hit_coverage
NZ_FFCX01000005.1_40597_40807_+	AcrIIC2-Aca3\|WP_042743680.1	1.0	1	1.0

NZ_FFCX01000005.1|WP_042743678.1|40233_40605_+|anti-CRISPR-protein-AcrIIC2

40233_40605_+

123 aa aa

NZ_FFCX01000005.1_40597_40807_+

Protein_id	Hit_Aca_id	Identity	Query_coverage	Hit_coverage
NZ_FFCX01000005.1_40597_40807_+	AcrIIC2-Aca3\|WP_042743680.1	1.0	1	1.0

23. NZ_FFCX01000028

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_FFCX01000028_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_FFCX01000028_1

7151-7337

Orphan

I-E

Consensus_repeat	Method
CTAGATTCCCACTTTCGTGGGAATGACGGCA	PILER-CR

2 spacers

The CRISPR arrays of NZ_FFCX01000028_1

>merge|NZ_FFCX01000028|1|7151-7337|PILER-CR
CTAGATTCCCACTTTCGTGGGAATGACGGCAGAGCGGATTCTGTTGCTCCCGATAAATGCCGCAACCTCAAATCCCGTCATTCCCGCGCAGGCGGGAATCTAGGTCTGTCGGTGCGGAAACTTATCGGATAAAACGGTTTCTTGAGATTTTACGTTCTGGATTCCCACTTTCGTGGGAATGACGGGA

>NZ_FFCX01000028|1|1|7151-7337|PILER-CR
CTAGATTCCCACTTTCGTGGGAATGACGGCA	GAGCGGATTCTGTTGCTCCCGATAAATGCCGCAACCTCAAATCCCGTC
ATTCCCGCGCAGGCGGGAATCTAGGTCTGTC	GGTGCGGAAACTTATCGGATAAAACGGTTTCTTGAGATTTTACGTTCTGGATTCCCACTTTCGTGGGAATG
ACGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_FFCX01000028.1\|WP_002219946.1\|3919_5821_+\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_FFCX01000028.1\|WP_002224688.1\|14249_14813_-\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	unknown	unknown	gnl\|CDD\|236354
NZ_FFCX01000028.1\|WP_002244344.1\|10694_11492_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_FFCX01000028.1\|WP_061706048.1\|7780_8773_-\|porin	unknown	unknown	gnl\|CDD\|365988
NZ_FFCX01000028.1\|WP_002225681.1\|16262_17504_-\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_FFCX01000028.1\|WP_002218169.1\|10332_10572_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225215
NZ_FFCX01000028.1\|WP_002214977.1\|10021_10345_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_FFCX01000028.1\|WP_002225684.1\|12788_13481_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|224368
NZ_FFCX01000028.1\|WP_002225687.1\|2446_3322_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239648
NZ_FFCX01000028.1\|WP_002225683.1\|13477_14221_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_FFCX01000028.1\|WP_002244343.1\|15060_16113_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_FFCX01000028.1\|WP_153309846.1\|11742_11919_+\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000028.1\|WP_002225688.1\|1499_2438_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361

Protein	Function_ID	Function_description	E-value
NZ_FFCX01000028.1\|WP_002219946.1\|3919_5821_+\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_FFCX01000028.1\|WP_002224688.1\|14249_14813_-\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	gnl\|CDD\|236354	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase.	7.09175e-105
NZ_FFCX01000028.1\|WP_002244344.1\|10694_11492_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	2.26581e-130
NZ_FFCX01000028.1\|WP_061706048.1\|7780_8773_-\|porin	gnl\|CDD\|365988	pfam00267, Porin_1, Gram-negative porin.	2.76749e-85
NZ_FFCX01000028.1\|WP_002225681.1\|16262_17504_-\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	8.15364e-145
NZ_FFCX01000028.1\|WP_002218169.1\|10332_10572_-\|hypothetical-protein	gnl\|CDD\|225215	COG2336, MazE, Growth regulator [Signal transduction mechanisms].	1.71634e-25
NZ_FFCX01000028.1\|WP_002214977.1\|10021_10345_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	8.351e-28
NZ_FFCX01000028.1\|WP_002225684.1\|12788_13481_-\|M48-family-metallopeptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	4.18048e-70
NZ_FFCX01000028.1\|WP_002225687.1\|2446_3322_-\|NUDIX-domain-containing-protein	gnl\|CDD\|239648	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.0326e-83
NZ_FFCX01000028.1\|WP_002225683.1\|13477_14221_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	5.61916e-47
NZ_FFCX01000028.1\|WP_002244343.1\|15060_16113_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.90962e-31
NZ_FFCX01000028.1\|WP_002225688.1\|1499_2438_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	4.53134e-124

>NZ_FFCX01000028.1|WP_002219946.1|3919_5821_+|phosphomethylpyrimidine-synthase-ThiC
MTTPKKTAKTSGNEARELADLSEDIGIRFKYPNSERVYLQGSRDDIRVPLREIRQDDTYTAQGAEANPPIPVYDTSGVYGDPAAHIDLKQGLPHIRTAWLNERGDTEILPKLSSEYGIERAHDPKTAHLRFNQITRPRRAKSGSNVTQLHYARQGIITPEMEFVAIRERLKLDELSQKSEYAKLLKQHAGQSFGANIPTRPDQITPEFVRQEIAAGRAIIPANINHPELEPMIIGRNFRVKINGNLGNSAVTSSLTEEVEKMVWSLRWGADTIMDLSTGAHIHETREWIIRNAPVPIGTVPIYQALEKTGGIAEDLTWDLFRDTLIEQAEQGVDYFTIHAGVLLRYVPMTANRLTGIVSRGGSIMAKWCLAHHRENFLYTHFDEICEIMKAYDVSFSLGDGLRPGCIADANDESQFAELHTLGELTDKAWKHDVQVMIEGPGHVPLQRVKENMTEELQHCFEAPFYTLGPLVTDIAPGYDHITSGIGAANIGWYGTAMLCYVTPKEHLGLPDKEDVRTGIITYKLAAHAADLAKGWPGAQLRDNALSKARFEFRWRDQFRLSLDPERAESFHDETLPAEGAKIAHFCSMCGPKFCSMKITQEVRDYADKQKAQRQGMEEKAVEFVKKGAKIYS
>NZ_FFCX01000028.1|WP_002225687.1|2446_3322_-|NUDIX-domain-containing-protein
MPTVRFTESVSKHDLDALFEWAKASYGAESCWKTLYLNGLPLGNLSPEWVERVKKDWEAGCSESSDGIFLNADGWPDMGRRLQHLARSWHCAGLLDGWRNECFDLTDGGGNPLFTLERAAFRPFGLLSRAVHLNGLTESDGRWHFWIGRRSPHKAVDPDKLDNTAAGGVSGGEMPSEAVCRESSEEAGLDKTLFPFIRPVSRLHSLRPVSRGVHNEILYVFDAVLPETFLPENQDGEVAGFEKMDIGGLLDAMLSGNMMHDAQLVTLDAFCRYGLIDAAHPLSEWLDGIRL
>NZ_FFCX01000028.1|WP_002225688.1|1499_2438_-|ABC-transporter-ATP-binding-protein
MLELNGLCKRFGNKTVADNICLTVGRGKILAVLGRSGCGKSTLLNIIAGIVRPDGGEIWLNGENITRMPPEKRRISLMFQDYALFPHMSALENAAFGLKMQKMPKAEAERLAMAALAEVGLENEAHRKPEKLSGGEKQRLALARALVVRPSLLLLDESFSSLDTHLRGTLRRMTAERIRNGGIPAVLVTHSPEEACTTADEIAVMHKGRILQYGTPETLVKTPSCVQVARLMGLPNTDDNRHIPQHAVRFDQDGMECRVLSRTCLPESFSLSVLHPEHGILWLNLDMRHAGAVSGKDTVRIHIEEREIVRFR
>NZ_FFCX01000028.1|WP_061706048.1|7780_8773_-|porin
MKKSLIALTLAALPVAAMADVTLYGTIKAGVETSRSVEHNGGQVVSVETGTGIVDLGSKIGFKGQEDLGNGLKAIWQVEQKASIAGTDSGWGNRQSFIGLKGGFGKLRVGRLNSVLKDTGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHQDVDDVKIEKYQIHRLVSGYDNDALHASVAVQQQDAKLVEDNYSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSFDDADLSNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGEKKFVSTAGGVGLRHKF
>NZ_FFCX01000028.1|WP_002214977.1|10021_10345_-|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MDMVVRGGIYLVSLDPTVGSEIKKTRPCVVVSPPEIHNYLKTVLIVPMTSGSRPAPFRVNVRFQDKDGLLLPEQIRAVDKAGLVKHLGNLDNSTAEKLFAVLQEMFA
>NZ_FFCX01000028.1|WP_002218169.1|10332_10572_-|hypothetical-protein
MILNIRKMGNSQGVILPKSLLGQIGAVDSLAVTVEKGNIILSCPTVRRGWAEAAAMLVETEQEHFFSEIENEADKEWIW
>NZ_FFCX01000028.1|WP_002244344.1|10694_11492_-|tRNA-pseudouridine(38-40)-synthase-TruA
MDTAQKQRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQVVHFDTTAARPQQAWVRGVNAHLPEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPVRSPLLKNRAGWTHLKLDIGQMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYRADLTQSSGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYLTGVDYPEAYGIIRPQIPEWL
>NZ_FFCX01000028.1|WP_153309846.1|11742_11919_+|hypothetical-protein
MPRFSSKRTILSGAEAPSESVPYYLYCLRLRRLVLIFVNPLYPISFRTDKTRFPLSWE
>NZ_FFCX01000028.1|WP_002225684.1|12788_13481_-|M48-family-metallopeptidase
MTAFVHTLSDGMELTVEIKRRAKKNLIIRPAGTHTVRISVPPCFSVSALNRWLYENEAVLRQTLAKTPPPQTAENRLPESILFHGRQLALTAHQDTQILLMPSEIRVPEGAPEKQLALLRDFLERQAHSYLIPRLERHARTTQLFPASSSLTSAKTFWGVCRKTTGIRFNWRLVGAPEYVADYVCIHELCHLAHPDHSPAFWELTRRFAPYTPKAKQWLKIHGRELFALG
>NZ_FFCX01000028.1|WP_002225683.1|13477_14221_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MLIIRNLIYWLILCSTLIFLFPFMLLASPFRDGAHKMARVWVGILNWSLKHIVGLKYRIIGAENIPDRPAVICAKHQSGWETLALQDIFPPQVYVAKRELFKIPFFGWGLKLVKTIGIDRNNRREANEQLIKQGLVRKNEGYWITIFPEGTRLAPGKRGKYKLGGARMAKMFEMDIVPVALNSGEFWPKNSFLKYPGEITVVICPTIPHASGSEAELMEKCEHLIETQQPLISGAGPFAAKMPSETA
>NZ_FFCX01000028.1|WP_002224688.1|14249_14813_-|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase
MKLIILDRDGVINQDRDDFVKSVDEWIPVEGSMDAVAFLTQAGYTVAVATNQSGIGRKYFTVQNLTEMHAKMHRLVRQAGGEINGIWFCPHTDADNCNCRKPKPGMIEDIIGRFNAQASETWLVGDSLRDLQAIDAVGGKPALVLTGKGKKTLSQHGHELPEHTQVFDTLLDFSQYIMQENTAPQAD
>NZ_FFCX01000028.1|WP_002244343.1|15060_16113_-|glycosyltransferase-family-4-protein
MKLKIDIATNNFKHGGGTERYTLDLVKGLNRQNITPAVYATKFDHSIPEYALIEPHLVDQHRTLKKLRSFLFSSRLAQTRKNSAAKLIACHHADYADLLICGGTHLGYLHHMAQKPNLLDRLAIRRNRSNYATAKLIMAHSHMMRRELVGLYGVPPERIQVAPPPADTERFFPQPGETADLRAKYGFADHETVFLFPSTGHTRKGLELLADFFEHTSLPVKLAVVGSPLPRPMKNVVGLGFCTDMPELYRAADFTIMASLYEPFGLVGVESVLCGTRVVLSENMACTEVMNEEAGFFFSRQNPETLAQAVAQAVSLKKQGGHRLSDPMRALNYNPALDKHIGLILEMLAA
>NZ_FFCX01000028.1|WP_002225681.1|16262_17504_-|tryptophan-permease
MPNKTPSLFGGAMIIAGTVIGAGMLANPTATSGVWFTGSLAVLLYTWFSMLSSGLMILEVNTHYPHGASFDTMVKDLLGRGWNIINGIAVAFVLYLLTYAYIFVGGDLTAKGLGSAAGGDVSLTVGQLVFFGILAFCVWASARLVDRFTGVLIGGMVLTFIWAAGGLIADAKPSVLFDTQAPAGTNYWIYAATALPVCLASFGFHGNVSSLLKYFKGDAPKVAKSIWTGTLIALVIYVLWQTAIQGNLPRNEFAPVIAAEGQVSVLIETLSKFAQTGNMDKILSLFSYMAIATSFLGVTLGLFDYIADIFKWNDSISGRTKTAALTFLPPLISCLLFPTGFVTAIGYVGLAATVWTGIIPAMLLYRSRKKFGAGKTYKVYGGLWLMVWVFLFGIVNIAAQVLSQMELVPVFKG

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Crispr_ID: NZ_FFCX01000028_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_FFCX01000028_2

12336-12416

Orphan

I-E

Consensus_repeat	Method
GATTCCCACTTTCGTGGGAATGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_FFCX01000028_2

>merge|NZ_FFCX01000028|2|12336-12416|CRISPRCasFinder
GATTCCCACTTTCGTGGGAATGACGGGATGCAGGTTTTCTTAACCCCGCGTTCTAGATTCCCACTTTCGTAGGAATGACGG

>NZ_FFCX01000028|2|1|12336-12416|CRISPRCasFinder
GATTCCCACTTTCGTGGGAATGACGG	GATGCAGGTTTTCTTAACCCCGCGTTCTA
GATTCCCACTTTCGTAGGAATGACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_FFCX01000028.1\|WP_002219946.1\|3919_5821_+\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_FFCX01000028.1\|WP_002224688.1\|14249_14813_-\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	unknown	unknown	gnl\|CDD\|236354
NZ_FFCX01000028.1\|WP_002214959.1\|20214_21600_-\|GntP-family-permease	unknown	unknown	gnl\|CDD\|225330
NZ_FFCX01000028.1\|WP_002244344.1\|10694_11492_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_FFCX01000028.1\|WP_061706048.1\|7780_8773_-\|porin	unknown	unknown	gnl\|CDD\|365988
NZ_FFCX01000028.1\|WP_002225681.1\|16262_17504_-\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_FFCX01000028.1\|WP_002218169.1\|10332_10572_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225215
NZ_FFCX01000028.1\|WP_002214977.1\|10021_10345_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_FFCX01000028.1\|WP_002225684.1\|12788_13481_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|224368
NZ_FFCX01000028.1\|WP_002221694.1\|17655_18384_+\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	unknown	unknown	gnl\|CDD\|235350
NZ_FFCX01000028.1\|WP_002225687.1\|2446_3322_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239648
NZ_FFCX01000028.1\|WP_002225683.1\|13477_14221_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_FFCX01000028.1\|WP_002221692.1\|19676_20195_-\|gluconokinase	unknown	unknown	gnl\|CDD\|273551
NZ_FFCX01000028.1\|WP_002244343.1\|15060_16113_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_FFCX01000028.1\|WP_079760638.1\|21785_23381_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NZ_FFCX01000028.1\|WP_153309846.1\|11742_11919_+\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000028.1\|WP_002218156.1\|18420_19338_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|273351
NZ_FFCX01000028.1\|WP_002225688.1\|1499_2438_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361

Protein	Function_ID	Function_description	E-value
NZ_FFCX01000028.1\|WP_002219946.1\|3919_5821_+\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_FFCX01000028.1\|WP_002224688.1\|14249_14813_-\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	gnl\|CDD\|236354	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase.	7.09175e-105
NZ_FFCX01000028.1\|WP_002214959.1\|20214_21600_-\|GntP-family-permease	gnl\|CDD\|225330	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism].	5.80516e-123
NZ_FFCX01000028.1\|WP_002244344.1\|10694_11492_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	2.26581e-130
NZ_FFCX01000028.1\|WP_061706048.1\|7780_8773_-\|porin	gnl\|CDD\|365988	pfam00267, Porin_1, Gram-negative porin.	2.76749e-85
NZ_FFCX01000028.1\|WP_002225681.1\|16262_17504_-\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	8.15364e-145
NZ_FFCX01000028.1\|WP_002218169.1\|10332_10572_-\|hypothetical-protein	gnl\|CDD\|225215	COG2336, MazE, Growth regulator [Signal transduction mechanisms].	1.71634e-25
NZ_FFCX01000028.1\|WP_002214977.1\|10021_10345_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	8.351e-28
NZ_FFCX01000028.1\|WP_002225684.1\|12788_13481_-\|M48-family-metallopeptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	4.18048e-70
NZ_FFCX01000028.1\|WP_002221694.1\|17655_18384_+\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.08276e-148
NZ_FFCX01000028.1\|WP_002225687.1\|2446_3322_-\|NUDIX-domain-containing-protein	gnl\|CDD\|239648	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.0326e-83
NZ_FFCX01000028.1\|WP_002225683.1\|13477_14221_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	5.61916e-47
NZ_FFCX01000028.1\|WP_002221692.1\|19676_20195_-\|gluconokinase	gnl\|CDD\|273551	TIGR01313, Thermosensitive_gluconokinase, carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.	7.31793e-92
NZ_FFCX01000028.1\|WP_002244343.1\|15060_16113_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.90962e-31
NZ_FFCX01000028.1\|WP_079760638.1\|21785_23381_+\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	4.03152e-96
NZ_FFCX01000028.1\|WP_002218156.1\|18420_19338_+\|homoserine-kinase	gnl\|CDD\|273351	TIGR00938, homoserine_kinase_homolog, homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase. [Amino acid biosynthesis, Aspartate family].	0
NZ_FFCX01000028.1\|WP_002225688.1\|1499_2438_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	4.53134e-124

>NZ_FFCX01000028.1|WP_153309846.1|11742_11919_+|hypothetical-protein
MPRFSSKRTILSGAEAPSESVPYYLYCLRLRRLVLIFVNPLYPISFRTDKTRFPLSWE
>NZ_FFCX01000028.1|WP_002244344.1|10694_11492_-|tRNA-pseudouridine(38-40)-synthase-TruA
MDTAQKQRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQVVHFDTTAARPQQAWVRGVNAHLPEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPVRSPLLKNRAGWTHLKLDIGQMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYRADLTQSSGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYLTGVDYPEAYGIIRPQIPEWL
>NZ_FFCX01000028.1|WP_002218169.1|10332_10572_-|hypothetical-protein
MILNIRKMGNSQGVILPKSLLGQIGAVDSLAVTVEKGNIILSCPTVRRGWAEAAAMLVETEQEHFFSEIENEADKEWIW
>NZ_FFCX01000028.1|WP_002214977.1|10021_10345_-|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MDMVVRGGIYLVSLDPTVGSEIKKTRPCVVVSPPEIHNYLKTVLIVPMTSGSRPAPFRVNVRFQDKDGLLLPEQIRAVDKAGLVKHLGNLDNSTAEKLFAVLQEMFA
>NZ_FFCX01000028.1|WP_061706048.1|7780_8773_-|porin
MKKSLIALTLAALPVAAMADVTLYGTIKAGVETSRSVEHNGGQVVSVETGTGIVDLGSKIGFKGQEDLGNGLKAIWQVEQKASIAGTDSGWGNRQSFIGLKGGFGKLRVGRLNSVLKDTGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHQDVDDVKIEKYQIHRLVSGYDNDALHASVAVQQQDAKLVEDNYSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSFDDADLSNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGEKKFVSTAGGVGLRHKF
>NZ_FFCX01000028.1|WP_002219946.1|3919_5821_+|phosphomethylpyrimidine-synthase-ThiC
MTTPKKTAKTSGNEARELADLSEDIGIRFKYPNSERVYLQGSRDDIRVPLREIRQDDTYTAQGAEANPPIPVYDTSGVYGDPAAHIDLKQGLPHIRTAWLNERGDTEILPKLSSEYGIERAHDPKTAHLRFNQITRPRRAKSGSNVTQLHYARQGIITPEMEFVAIRERLKLDELSQKSEYAKLLKQHAGQSFGANIPTRPDQITPEFVRQEIAAGRAIIPANINHPELEPMIIGRNFRVKINGNLGNSAVTSSLTEEVEKMVWSLRWGADTIMDLSTGAHIHETREWIIRNAPVPIGTVPIYQALEKTGGIAEDLTWDLFRDTLIEQAEQGVDYFTIHAGVLLRYVPMTANRLTGIVSRGGSIMAKWCLAHHRENFLYTHFDEICEIMKAYDVSFSLGDGLRPGCIADANDESQFAELHTLGELTDKAWKHDVQVMIEGPGHVPLQRVKENMTEELQHCFEAPFYTLGPLVTDIAPGYDHITSGIGAANIGWYGTAMLCYVTPKEHLGLPDKEDVRTGIITYKLAAHAADLAKGWPGAQLRDNALSKARFEFRWRDQFRLSLDPERAESFHDETLPAEGAKIAHFCSMCGPKFCSMKITQEVRDYADKQKAQRQGMEEKAVEFVKKGAKIYS
>NZ_FFCX01000028.1|WP_002225687.1|2446_3322_-|NUDIX-domain-containing-protein
MPTVRFTESVSKHDLDALFEWAKASYGAESCWKTLYLNGLPLGNLSPEWVERVKKDWEAGCSESSDGIFLNADGWPDMGRRLQHLARSWHCAGLLDGWRNECFDLTDGGGNPLFTLERAAFRPFGLLSRAVHLNGLTESDGRWHFWIGRRSPHKAVDPDKLDNTAAGGVSGGEMPSEAVCRESSEEAGLDKTLFPFIRPVSRLHSLRPVSRGVHNEILYVFDAVLPETFLPENQDGEVAGFEKMDIGGLLDAMLSGNMMHDAQLVTLDAFCRYGLIDAAHPLSEWLDGIRL
>NZ_FFCX01000028.1|WP_002225688.1|1499_2438_-|ABC-transporter-ATP-binding-protein
MLELNGLCKRFGNKTVADNICLTVGRGKILAVLGRSGCGKSTLLNIIAGIVRPDGGEIWLNGENITRMPPEKRRISLMFQDYALFPHMSALENAAFGLKMQKMPKAEAERLAMAALAEVGLENEAHRKPEKLSGGEKQRLALARALVVRPSLLLLDESFSSLDTHLRGTLRRMTAERIRNGGIPAVLVTHSPEEACTTADEIAVMHKGRILQYGTPETLVKTPSCVQVARLMGLPNTDDNRHIPQHAVRFDQDGMECRVLSRTCLPESFSLSVLHPEHGILWLNLDMRHAGAVSGKDTVRIHIEEREIVRFR
>NZ_FFCX01000028.1|WP_002225684.1|12788_13481_-|M48-family-metallopeptidase
MTAFVHTLSDGMELTVEIKRRAKKNLIIRPAGTHTVRISVPPCFSVSALNRWLYENEAVLRQTLAKTPPPQTAENRLPESILFHGRQLALTAHQDTQILLMPSEIRVPEGAPEKQLALLRDFLERQAHSYLIPRLERHARTTQLFPASSSLTSAKTFWGVCRKTTGIRFNWRLVGAPEYVADYVCIHELCHLAHPDHSPAFWELTRRFAPYTPKAKQWLKIHGRELFALG
>NZ_FFCX01000028.1|WP_002225683.1|13477_14221_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MLIIRNLIYWLILCSTLIFLFPFMLLASPFRDGAHKMARVWVGILNWSLKHIVGLKYRIIGAENIPDRPAVICAKHQSGWETLALQDIFPPQVYVAKRELFKIPFFGWGLKLVKTIGIDRNNRREANEQLIKQGLVRKNEGYWITIFPEGTRLAPGKRGKYKLGGARMAKMFEMDIVPVALNSGEFWPKNSFLKYPGEITVVICPTIPHASGSEAELMEKCEHLIETQQPLISGAGPFAAKMPSETA
>NZ_FFCX01000028.1|WP_002224688.1|14249_14813_-|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase
MKLIILDRDGVINQDRDDFVKSVDEWIPVEGSMDAVAFLTQAGYTVAVATNQSGIGRKYFTVQNLTEMHAKMHRLVRQAGGEINGIWFCPHTDADNCNCRKPKPGMIEDIIGRFNAQASETWLVGDSLRDLQAIDAVGGKPALVLTGKGKKTLSQHGHELPEHTQVFDTLLDFSQYIMQENTAPQAD
>NZ_FFCX01000028.1|WP_002244343.1|15060_16113_-|glycosyltransferase-family-4-protein
MKLKIDIATNNFKHGGGTERYTLDLVKGLNRQNITPAVYATKFDHSIPEYALIEPHLVDQHRTLKKLRSFLFSSRLAQTRKNSAAKLIACHHADYADLLICGGTHLGYLHHMAQKPNLLDRLAIRRNRSNYATAKLIMAHSHMMRRELVGLYGVPPERIQVAPPPADTERFFPQPGETADLRAKYGFADHETVFLFPSTGHTRKGLELLADFFEHTSLPVKLAVVGSPLPRPMKNVVGLGFCTDMPELYRAADFTIMASLYEPFGLVGVESVLCGTRVVLSENMACTEVMNEEAGFFFSRQNPETLAQAVAQAVSLKKQGGHRLSDPMRALNYNPALDKHIGLILEMLAA
>NZ_FFCX01000028.1|WP_002225681.1|16262_17504_-|tryptophan-permease
MPNKTPSLFGGAMIIAGTVIGAGMLANPTATSGVWFTGSLAVLLYTWFSMLSSGLMILEVNTHYPHGASFDTMVKDLLGRGWNIINGIAVAFVLYLLTYAYIFVGGDLTAKGLGSAAGGDVSLTVGQLVFFGILAFCVWASARLVDRFTGVLIGGMVLTFIWAAGGLIADAKPSVLFDTQAPAGTNYWIYAATALPVCLASFGFHGNVSSLLKYFKGDAPKVAKSIWTGTLIALVIYVLWQTAIQGNLPRNEFAPVIAAEGQVSVLIETLSKFAQTGNMDKILSLFSYMAIATSFLGVTLGLFDYIADIFKWNDSISGRTKTAALTFLPPLISCLLFPTGFVTAIGYVGLAATVWTGIIPAMLLYRSRKKFGAGKTYKVYGGLWLMVWVFLFGIVNIAAQVLSQMELVPVFKG
>NZ_FFCX01000028.1|WP_002221694.1|17655_18384_+|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG
MGGKMSDKKYNVDEGEIAKFSRIADKWWDKSGEFKTLHDINPLRLDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLHAALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIVRACANLVKPDGMVFFSTINKNPKSYLHLIVAAEYLLKFVPKGTHDWKKFIAPAELARMCRQAGLDVADTKGMTYHVLSQTYALCDSTDVNYMFACRPAF
>NZ_FFCX01000028.1|WP_002218156.1|18420_19338_+|homoserine-kinase
MSVYTSVSDDEMRGFLSGYDLGEFVSLQGIAQGITNSNYFLTTTSGRYVLTVFEVLKQEELPFFLELNRHLSMKGVAVAAPVARKDGRLDSVLAGKPACLVACLKGSDTALPTAEQCFHTGAMLAKMHLAAADFPLEMENPRYNAWWTEACARLLPVLSQDDAALLCSEIDALKDNLGNHLPSGIIHADLFKDNVLLDGGQVSGFIDFYYACRGNFMYDLAIAVNDWARTADNKLDEALKKAFIGGYEGVRPLSAEEKAYFPTAQRAGCIRFWVSRLLDFHFPQAGEMTFIKDPNAFRNLLLSLG
>NZ_FFCX01000028.1|WP_002221692.1|19676_20195_-|gluconokinase
MTTHFVVMGVCGCGKTTAALSLQKHLGQCPYAEGDEFHTQANRDKMGAGIPLTDEDRYPWLGNLRDWMTQQAQNGANHTIVTCSALKRGYRDILRGAEGKAAFIHLSPPQDINLERMMSRKGHYMKAGMLDSQLEILEELGEGEYGVKIANPGTPEAVEADILNWVASENLL
>NZ_FFCX01000028.1|WP_002214959.1|20214_21600_-|GntP-family-permease
MDGWTQTLSAQTLLGISAAAIILILILIVKFRIHALLTLVIVSLLTALATGLPTGSIVNDVLVKNFGGTLGGVALLVGLGAMLGRLVETSGGAQSLADALIRMFGEKRAPFALGVASLIFGFPIFFDAGLIVMLPIVFATARRMKQDVLPFALASIGAFSVMHVFLPPHPGPIAASEFYGANIGQVLILGLPTAFITWYFSGYMLGKVLGRTIHVPVPELLSGGTQDNDLPKEPAKAGTVVAIMLIPMLLIFLNTGVSALISEKLVSADETWVQTAKIIGSTPIALLISVLVALFVLGRKRGESGSALEKTVDGALAPVCSVILITGAGGMFGGVLRASGIGKALADSMADLGIPVLLGCFLVALALRIAQGSATVALTTAAALMAPAVAAAGFTDWQLACIVLATAAGSVGCSHFNDSGFWLVGRLLDMDVPTTLKTWTVNQTLIALIGFALSALLFAIV
>NZ_FFCX01000028.1|WP_079760638.1|21785_23381_+|iron-ABC-transporter-permease
MWGLLGTIATSVFQVGKAMDGRRWVVWGAFALLPSAFLAVMVVAPLWAVAAYDGLAWRAVLSDAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLVAGVGVLALFGADGLLWRGRQDTPYLLLYGNVFFNLPVLVRAAYQGFVQVPAARLQTARTLGAGAWRRFLDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGSRYATVEVEIYQLVMFELDMAVASVLVWLVLGVTAAAGLLYAWFGRRAVSDKAVSPVMPSPPQSVGEYVLLAFAAAVLSVCCLFPLLAIVVKAWSAGESWRVLMESETWQAVWNTLRFSAAAVYAAAVLGVVYAAAARRSAWMRGLMFLPFMVSPVCVSAGVLLLYPQWTASLPLLLAMYALLAYPFVAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEFAATLFLSRPEWQTLTTLIYAYLGRAGADNYARAMVLTLLLSAFALGIFLLLDGGEGGKQTETL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_FFCX01000028_1	1.1\|7182\|48\|NZ_FFCX01000028\|PILER-CR	7182-7229	48	NZ_FFCX01000008.1	7513-7560	0	1.0
NZ_FFCX01000028_1	1.1\|7182\|48\|NZ_FFCX01000028\|PILER-CR	7182-7229	48	NZ_FFCX01000008.1	116-163	2	0.958
NZ_FFCX01000028_1	1.1\|7182\|48\|NZ_FFCX01000028\|PILER-CR	7182-7229	48	NZ_FFCX01000008.1	5386-5433	2	0.958
NZ_FFCX01000028_1	1.1\|7182\|48\|NZ_FFCX01000028\|PILER-CR	7182-7229	48	NZ_FFCX01000013.1	50493-50540	2	0.958
NZ_FFCX01000028_1	1.1\|7182\|48\|NZ_FFCX01000028\|PILER-CR	7182-7229	48	NZ_FFCX01000028.1	6279-6326	0	1.0
NZ_FFCX01000028_1	1.1\|7182\|48\|NZ_FFCX01000028\|PILER-CR	7182-7229	48	NZ_FFCX01000059.1	6043-6090	2	0.958
NZ_FFCX01000028_1	1.2\|7261\|71\|NZ_FFCX01000028\|PILER-CR	7261-7331	71	NZ_FFCX01000006.1	43731-43801	12	0.831
NZ_FFCX01000028_1	1.2\|7261\|71\|NZ_FFCX01000028\|PILER-CR	7261-7331	71	NZ_FFCX01000007.1	5103-5173	13	0.817
NZ_FFCX01000028_1	1.2\|7261\|71\|NZ_FFCX01000028\|PILER-CR	7261-7331	71	NZ_FFCX01000028.1	6333-6403	12	0.831
NZ_FFCX01000028_2	2.1\|12362\|29\|NZ_FFCX01000028\|CRISPRCasFinder	12362-12390	29	NZ_FFCX01000015.1	45433-45461	2	0.931
NZ_FFCX01000028_2	2.1\|12362\|29\|NZ_FFCX01000028\|CRISPRCasFinder	12362-12390	29	NZ_FFCX01000089.1	153-181	2	0.931

1. spacer 1.1|7182|48|NZ_FFCX01000028|PILER-CR matches to position: 7513-7560, mismatch: 0, identity: 1.0

gagcggattctgttgctcccgataaatgccgcaacctcaaatcccgtc	CRISPR spacer
gagcggattctgttgctcccgataaatgccgcaacctcaaatcccgtc	Protospacer
************************************************

2. spacer 1.1|7182|48|NZ_FFCX01000028|PILER-CR matches to position: 116-163, mismatch: 2, identity: 0.958

gagcggattctgttgctcccgataaatgccgcaacctcaaatcccgtc	CRISPR spacer
gagcggtttctgttgctcccgataaatgccgcaatctcaaatcccgtc	Protospacer
****** ***************************.*************

3. spacer 1.1|7182|48|NZ_FFCX01000028|PILER-CR matches to position: 5386-5433, mismatch: 2, identity: 0.958

gagcggattctgttgctcccgataaatgccgcaacctcaaatcccgtc	CRISPR spacer
gagcggtttctgttgctcccgataaatgccgcaatctcaaatcccgtc	Protospacer
****** ***************************.*************

4. spacer 1.1|7182|48|NZ_FFCX01000028|PILER-CR matches to position: 50493-50540, mismatch: 2, identity: 0.958

gagcggattctgttgctcccgataaatgccgcaacctcaaatcccgtc	CRISPR spacer
gagcggcttctgttgctcccgataaatgccgcaatctcaaatcccgtc	Protospacer
****** ***************************.*************

5. spacer 1.1|7182|48|NZ_FFCX01000028|PILER-CR matches to position: 6279-6326, mismatch: 0, identity: 1.0

gagcggattctgttgctcccgataaatgccgcaacctcaaatcccgtc	CRISPR spacer
gagcggattctgttgctcccgataaatgccgcaacctcaaatcccgtc	Protospacer
************************************************

6. spacer 1.1|7182|48|NZ_FFCX01000028|PILER-CR matches to position: 6043-6090, mismatch: 2, identity: 0.958

gagcggattctgttgctcccgataaatgccgcaacctcaaatcccgtc	CRISPR spacer
gagcggcttctgttgctcccgataaatgccgcaatctcaaatcccgtc	Protospacer
****** ***************************.*************

7. spacer 1.2|7261|71|NZ_FFCX01000028|PILER-CR matches to position: 43731-43801, mismatch: 12, identity: 0.831

gcgcaggcgggaatctaggtctgtcggtgcggaaacttatcggataaaacggtttcttga	CRISPR spacer
gcgcaggcgggaatctaggtctgtcggtgcggaaacttatcggataaaacggtttcttca	Protospacer
********************************************************** *

8. spacer 1.2|7261|71|NZ_FFCX01000028|PILER-CR matches to position: 5103-5173, mismatch: 13, identity: 0.817

gcgcaggcgggaatctaggtctgtcggtgcggaaacttatcggataaaacggtttcttga	CRISPR spacer
gcgcaggcgggaatccaggtctgtcggtgcggaaacttatcggataaaacggtttcttta	Protospacer
***************.****************************************** *

9. spacer 1.2|7261|71|NZ_FFCX01000028|PILER-CR matches to position: 6333-6403, mismatch: 12, identity: 0.831

gcgcaggcgggaatctaggtctgtcggtgcggaaacttatcggataaaacggtttcttga	CRISPR spacer
gcgcaggcgggaatctaggtctgtcggtgcggaaacttatcgggtaaaacggtttcttga	Protospacer
*******************************************.****************

10. spacer 2.1|12362|29|NZ_FFCX01000028|CRISPRCasFinder matches to position: 45433-45461, mismatch: 2, identity: 0.931

gatgcaggttttcttaaccccgcgttcta	CRISPR spacer
gatgcaggttttcttaaccctgcgtccta	Protospacer
********************.****.***

11. spacer 2.1|12362|29|NZ_FFCX01000028|CRISPRCasFinder matches to position: 153-181, mismatch: 2, identity: 0.931

gatgcaggttttcttaaccccgcgttcta	CRISPR spacer
gatgcaggttttcttaaccctgcgtccta	Protospacer
********************.****.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

24. NZ_FFCX01000053

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

25. NZ_FFCX01000017

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_FFCX01000017_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_FFCX01000017_1

22661-22832

Orphan

I-E

Consensus_repeat	Method
CCGTCATTCCCGCGCAGGCGGGAATC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_FFCX01000017_1

>merge|NZ_FFCX01000017|1|22661-22832|CRISPRCasFinder
CCGTCATTCCCGCGCAGGCGGGAATCCGACTTGTCCGGTTTTGGTTGTTTTTCGTTCCGTAACTTTTGAGCCGTCATTCCCGCGCAGGCGGGAATCTGGAATTTCAATGCCTCAAGAATTTATCGGAAAAAACCAAAACCCTTCCGCCGTCATTCCCACGAAAGTGGGAATC

>NZ_FFCX01000017|1|1|22661-22832|CRISPRCasFinder
CCGTCATTCCCGCGCAGGCGGGAATC	CGACTTGTCCGGTTTTGGTTGTTTTTCGTTCCGTAACTTTTGAG
CCGTCATTCCCGCGCAGGCGGGAATC	TGGAATTTCAATGCCTCAAGAATTTATCGGAAAAAACCAAAACCCTTCCG
CCGTCATTCCCACGAAAGTGGGAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_FFCX01000017.1\|WP_002214509.1\|34823_35447_+\|cytochrome-c4	unknown	unknown	gnl\|CDD\|225418
NZ_FFCX01000017.1\|WP_002225655.1\|18430_19852_-\|lipopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|225153
NZ_FFCX01000017.1\|WP_002225652.1\|26063_28373_-\|type-IV-pilus-secretin-PilQ	unknown	unknown	gnl\|CDD\|227133
NZ_FFCX01000017.1\|WP_002217908.1\|28954_29602_-\|type-4a-pilus-biogenesis-protein-PilO	unknown	unknown	gnl\|CDD\|225708
NZ_FFCX01000017.1\|WP_002214517.1\|30204_31320_-\|pilus-assembly-protein-PilM	unknown	unknown	gnl\|CDD\|227306
NZ_FFCX01000017.1\|WP_002225659.1\|10871_11075_+\|hypothetical-protein	unknown	unknown	unknown
NZ_FFCX01000017.1\|WP_002225657.1\|12407_13700_-\|valine--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|226485
NZ_FFCX01000017.1\|WP_002222986.1\|15713_16889_-\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223476
NZ_FFCX01000017.1\|WP_002214520.1\|29602_30202_-\|PilN-domain-containing-protein	unknown	unknown	gnl\|CDD\|225707
NZ_FFCX01000017.1\|WP_002214522.1\|28391_28937_-\|pilus-assembly-protein-PilP	unknown	unknown	gnl\|CDD\|225709
NZ_FFCX01000017.1\|WP_002219786.1\|31471_33868_+\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|227342
NZ_FFCX01000017.1\|WP_002222987.1\|13755_15666_-\|NADH-dependent-dehydratase-PglD	unknown	unknown	gnl\|CDD\|224011
NZ_FFCX01000017.1\|WP_002225658.1\|11519_12356_+\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223686
NZ_FFCX01000017.1\|WP_002248759.1\|33988_34618_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_FFCX01000017.1\|WP_002222978.1\|24649_25162_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NZ_FFCX01000017.1\|WP_002221481.1\|23490_24570_-\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
NZ_FFCX01000017.1\|WP_002226675.1\|21681_22524_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_FFCX01000017.1\|WP_002225656.1\|17021_18263_-\|pilin-glycosylation-protein-PglB	unknown	unknown	gnl\|CDD\|376775
NZ_FFCX01000017.1\|WP_002225654.1\|20046_21156_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_FFCX01000017.1\|WP_002217912.1\|21187_21652_-\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|224246

Protein	Function_ID	Function_description	E-value
NZ_FFCX01000017.1\|WP_002214509.1\|34823_35447_+\|cytochrome-c4	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.06154e-40
NZ_FFCX01000017.1\|WP_002225655.1\|18430_19852_-\|lipopolysaccharide-biosynthesis-protein	gnl\|CDD\|225153	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only].	7.37373e-29
NZ_FFCX01000017.1\|WP_002225652.1\|26063_28373_-\|type-IV-pilus-secretin-PilQ	gnl\|CDD\|227133	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion].	0
NZ_FFCX01000017.1\|WP_002217908.1\|28954_29602_-\|type-4a-pilus-biogenesis-protein-PilO	gnl\|CDD\|225708	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion].	3.93473e-90
NZ_FFCX01000017.1\|WP_002214517.1\|30204_31320_-\|pilus-assembly-protein-PilM	gnl\|CDD\|227306	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion].	2.23923e-147
NZ_FFCX01000017.1\|WP_002222978.1\|24649_25162_-\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	9.63766e-77
NZ_FFCX01000017.1\|WP_002225657.1\|12407_13700_-\|valine--pyruvate-transaminase	gnl\|CDD\|226485	COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism].	0
NZ_FFCX01000017.1\|WP_002222986.1\|15713_16889_-\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	gnl\|CDD\|223476	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane].	2.37451e-161
NZ_FFCX01000017.1\|WP_002214520.1\|29602_30202_-\|PilN-domain-containing-protein	gnl\|CDD\|225707	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion].	2.93941e-62
NZ_FFCX01000017.1\|WP_002214522.1\|28391_28937_-\|pilus-assembly-protein-PilP	gnl\|CDD\|225709	COG3168, PilP, Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion].	2.28298e-85
NZ_FFCX01000017.1\|WP_002219786.1\|31471_33868_+\|penicillin-binding-protein-1A	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
NZ_FFCX01000017.1\|WP_002222987.1\|13755_15666_-\|NADH-dependent-dehydratase-PglD	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	0
NZ_FFCX01000017.1\|WP_002225658.1\|11519_12356_+\|PHP-domain-containing-protein	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	8.55055e-85
NZ_FFCX01000017.1\|WP_002248759.1\|33988_34618_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	8.84622e-104
NZ_FFCX01000017.1\|WP_002221481.1\|23490_24570_-\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	0
NZ_FFCX01000017.1\|WP_002226675.1\|21681_22524_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	8.17879e-142
NZ_FFCX01000017.1\|WP_002225656.1\|17021_18263_-\|pilin-glycosylation-protein-PglB	gnl\|CDD\|376775	pfam02397, Bac_transf, Bacterial sugar transferase. This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.	1.24808e-92
NZ_FFCX01000017.1\|WP_002225654.1\|20046_21156_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	4.33861e-121
NZ_FFCX01000017.1\|WP_002217912.1\|21187_21652_-\|transcriptional-repressor-NrdR	gnl\|CDD\|224246	COG1327, COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription].	2.33477e-75

>NZ_FFCX01000017.1|WP_002226675.1|21681_22524_-|class-II-glutamine-amidotransferase
MCQLLGMNCNTPTDIMFSFEGFRRRGGITDHHADGFGIGFFEGKGVRLFHDDKPSANSPVADLVRAYQIKSENVIAHIRKASQGQTSLANTHPFMREMWGGYWLFAHNGHLIDFFPEQGEFFHPVGTTDSERAFCHILNRLRTRFAARPDDDTLFDAIAGLTHEIRKFGLFNFMLSDGIALFAHASTLLHYIVRQAPFGKARLLDDDVMVDFAEVTTPSDRVAVIATLPLTRDESWSQLAVDELVMFREGNIVRHDRPENPVYMSAEEGLEIARAAGVAV
>NZ_FFCX01000017.1|WP_002217912.1|21187_21652_-|transcriptional-repressor-NrdR
MKCPFCAHPDTRVADSRLMEERNAVRRRRHCPNCGKRFGTLETAELKMPAVIGPDKKRSPFNAQRLRNDLTAAARKSALTPEQIDETVRLTEHRLYTSGQRDIPSAALADMVLKELLRQDTEAAVRFAALHKRFDNPADFASWLAQAVKTGGKA
>NZ_FFCX01000017.1|WP_002225654.1|20046_21156_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MFSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHNIKTVFRKNGNAF
>NZ_FFCX01000017.1|WP_002225655.1|18430_19852_-|lipopolysaccharide-biosynthesis-protein
MDTKEILGYAAGSIGSAVLAVIILPLLSWYFPADDIGRIVLMQTAAGLTVSVLCLGLDQAYVREYYATADKDTLFKTLFLPPLLSAAAIAALLLSRPSLPSEILFSLDDAAAGIGLVLFELSFLPIRFLLLVLRMEGRALAFSSAQLVPKLAILLLLPLTVGLLHFPANTAVLTAVYALANLAAAAFLLFQNRCRLKAVRHAPFSPAVLHRGLRYGIPIALSSIAYWGLASADRLFLKKYAGLEQLGVYSMGISFGGAALLFQSIFSTVWTPYIFRAIEENAPPARLSATAESAAALLASALCLTGIFSPLASLLLPENYAAVRFIVVSCMLPPLFCTLAEISGIGLNVVRKTRPIALATLGALAANLLLLGLAVPSGGARGAAVACAASFWLFFAFKTESSCRLWQPLKRLPLYLHTLFCLTSSAAYTCFGTPANYPLFAGVWAAYLAGCILRHRKDLHKLFHYLKKQGFPL
>NZ_FFCX01000017.1|WP_002225656.1|17021_18263_-|pilin-glycosylation-protein-PglB
MSKFFKRLFDIVASASGLIFLSPVFLILIYLIRKNLGSPVFFFQERPGKDGKPFKMVKFRSMRDALDSDGIPLPDGERLTPFGKKLRAASLDELPELWNILKGEMSLVGPRPLLMQYLPLYDNFQNRRHEMKPGITGWAQVNGRNALSWDEKFACDVWYIDHFSLCLDIKILLLTVKKVLIKEGISAQGEATMPPFTGKRKLAVVGAGGHGKVVADLAAALGRYREIVFLDDRAQGSVNGFSVIGTTLLLENSLSPEQYDVAVAVGNNRIRRQIAEKAAALGFALPVLVHPDATVSPSATVGQGSVVMAKAVVQAGSVLKDGVIVNTAATVDHDCLLNAFVHISPGAHLSGNTHIGEESWIGTGACSRQQIRIGSRATIGAGAVVVRDVSDGMTVAGNPAKPLPRKNPETSTA
>NZ_FFCX01000017.1|WP_002222986.1|15713_16889_-|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein
MLNTFLSPWPCFTQEEADAVSKVLLSNKVNYWTGNECREFEKEFAAFAGTRYAVALANGTLALDVALKAMGIGAGDDVIVTSRTFLASASCIVNAGANPVFADVDLNSQNISAETVKAALTPTTKAVIVVHLAGMPAEMDGIMALAKEHNLWVIEDCAQAHGAKYKGKSVGSIGHVGAWSFCQDKIMTTGGEGGMVTTNDKTLWEKMWSYKDHGKSYDAVYNHEHAPGFRWLHESFGTNWRMMEMQAVIGRIQLKRLPEWTARRRENAAKLAESLGKFSSIRLVEVADYIGHAQYKFYAFVKPEHLKDGWTRDRIVGELNARKVPCYQGSCSEVYLEKAFDNTPWRPKERLTNAVELGDTSLMFLVHPTLTDDEIAFCKKHIEAVLTEAAR
>NZ_FFCX01000017.1|WP_002222987.1|13755_15666_-|NADH-dependent-dehydratase-PglD
MNLETLIALPRNIKKICFLIHDFLMIFIAFWFTQSLKADYSDEWFDFANWQSFLLTALLTITLFIRMGLYHAVTRFVSFRILTTALAGSLASAVLFFLNTLIFEERLRLALPIVYFLLLFVSVTGSRMVLRGLLSEHPKKQMIPVIIYGAGRSGRQLLEAVKQMREYSAAAFVDDDPKLWHTVIYDLAVYQPDAIAFLIERYGVEKILLAIPGATQEQRRRIINKLEAYPCEVLTIPGMKDLMDGKISIGTLKKISVSDLLGRDSVAPDDRLMSADIEGKTVMVTGAGGSIGSELCRQIIRRRPEKLLLFELSEFALYAIEKELRETCIQKRLDTEILPFLGSVQNRTLLEHVMTAFSVATVYHAAAYKHVPMVEFNTVEGIRNNIFGTLECALAATTSGVRTFVLISTDKAVRPTNTMGASKRMAELCLQALAAEPGQKTRFSMVRFGNVLGSSGSVVPLFEKQIAEGGPLTLTHPEITRYFMTIPEAAQLVIQAGAMGTGGDVFVLDMGESVKIIDLARQMITLSGLKPNTPEQPDGDIEILITGLRPGEKLYEELLIGDNVRKTGHPRIMTANETMLPWHELSALLDRIRAACDRYDQQAIRTLLINAPTGFAPSDGICDLLWVRETHRKNAV
>NZ_FFCX01000017.1|WP_002225657.1|12407_13700_-|valine--pyruvate-transaminase
MQFSAFGEKFTQHSGILQLMDDLGDALKSDKPVNMLGGGNPARIPEIDQAFADIFSKLAAEHAVENIGNYSNPQGDAVLIDALTAFLNREYSWNLTADNIALTNGSQNAFFYLFNLFGGKFNLSDGTSAEKAILLPLAPEYIGYADVHVEGQHFVSVKPKIENVEHEGEAGFFKYRVDFDALENLPELKAGKIGAICCSRPTNPTGNVLTDGEMARLDALAREHGIPLIIDNAYGMPFPNIIYSDVTLNWHENIILCFSLSKVGLPGVRTGIIVAAPEVVKAVSSLNAIVNLAPTRFGAAIATPLLESGEMKRLADQVIRPFYRNQAQTAVSLLKRELGAYPMKIHKPEGAIFLWLWFENLPVSSQTLYEMLKAEGTLIIPGEHFFVGIDTQDYPHAGECIRMSIAQDAQTLEKGIAAIGKTVRKLYDNV
>NZ_FFCX01000017.1|WP_002225658.1|11519_12356_+|PHP-domain-containing-protein
MIDLHCHSTVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADKLGLRLINGVEISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRKGRLKRLEAIAAKLEKKGIGGAYDGALALAANKEMVSRTHVAEFLIQAGHVKNKQQAFTKYLGDGKSCAVRHEWATLEDCVSAVNGAGGMAVIAHPMRYDLSATAKRNLFEEFKNLGGAGIEVHSGNCCKNDRLNYALLAERFGMLASAGSDFHRLNDFSGGILGACPELPENCKPVWEHFSRY
>NZ_FFCX01000017.1|WP_002225659.1|10871_11075_+|hypothetical-protein
MDTTLKYKAEALLGEPLLDEPVRPESWECCGSDCGEACIQTIYWADKAKYDVQRQKLKEAGWSDDAV
>NZ_FFCX01000017.1|WP_002221481.1|23490_24570_-|3-dehydroquinate-synthase
MKTLTVHTPSHSYPIFIGNGLLPQAGSLLKPHLGKRAAIIANETVAPLYLGTLQTALDAAGVSHFSIILPDGEAHKNWQTLNLIFDGLMQNRAERKTTLIALGGGVIGDMVGFAAATYQRGAPFVQIPTTLLSQVDSSVGGKTAINHPLGKNMIGAFYQPQAVLADLDTLHTLPARELSAGMAEVIKYGALGDIGFFEWLEQHMPELMTLDREKLAQAVYRCCQMKADIVAQDETEQGIRAWLNLGHTFGHAIETEMGYGTWLHGEAIAAGCVLAARLSEQLGKTSAADTARLAALLEAAGLPSAPPVFAFEKWLEHMSHDKKVSGGIMRFIGLNRLGEANITEITDTDILRRTLQPYL
>NZ_FFCX01000017.1|WP_002222978.1|24649_25162_-|shikimate-kinase
MKNFNGKLILIGLMGAGKTTLGRQMAQRLDYRFYDSDHEIAAAAGVPIPTIFEMEGEQGFRSRETAILKKLVILPHIVLSTGGGAVLKEENRALIRKSGTVVYLHAPPETLLERTRCDNSRPLLQVADPLAKLRELYAARDPVYRQTADFTVESANCRETVQTLLKRLSR
>NZ_FFCX01000017.1|WP_002225652.1|26063_28373_-|type-IV-pilus-secretin-PilQ
MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKVSFDKEIVNPTGFVTSSPARIALDFEQTGISMDQQVLEYADPLLSKISAAQNSSRARLVLNLNKPGQYNTEVRGNKVWIFINESDDTVSAPARPAVKAAPAAPAKQQAAAPSTKSAVSVSEPFTPAKQQAAAPFTESVVSVSAPFSPAKQQAAASAKQQAAAPAKQQAAAPAKQQAAAPAKQTNIDFRKDGKNAGIIELAALGFAGQPDISQQHDHIIVTLKNHTLPTTLQRSLDVADFKTPVQKVTLKRLNNDTQLIITTAGNWELVNKSAAPGYFTFQVLPKKQNLESGGVNNAPKTFTGRKISLDFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPRDELLAKDKALLQAEKDIADLGALYSQNFQLKYKNVEEFRSILRLDNADTTGNRNTLISGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDELDVPAQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGGDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFITPRIMGTAGNSLRY
>NZ_FFCX01000017.1|WP_002214522.1|28391_28937_-|pilus-assembly-protein-PilP
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDTKRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAELLLNSSDKNTEQAAAPAAEQN
>NZ_FFCX01000017.1|WP_002217908.1|28954_29602_-|type-4a-pilus-biogenesis-protein-PilO
MASKSSKTNLDLNNLHLLNLPARLFIALLAVAAVLGLGYAGLFKSQMESLEEYEAKETELKNTYKQKSIDAASLNNLRDELASIRSAFDIMLKQLPTDAEIPNLVQELHQAGSSNGLRLDSVMPQPPVDDGPIKRLPYSISITGNYEQISQFTRDVGSLSRIITLESLKIAQSPENGGNPDGKSSILNLSAIATTYQAKSVEELAAEAAQNAEQK
>NZ_FFCX01000017.1|WP_002214520.1|29602_30202_-|PilN-domain-containing-protein
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQEKDAFLIKKNKIEELQLKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELLSIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN
>NZ_FFCX01000017.1|WP_002214517.1|30204_31320_-|pilus-assembly-protein-PilM
MRLFKSLKNPKKTDAKLPKKSSGLNNRAAIGIDIDQHSIKMVQLSGRSLNQIQLEKYVIAKLPKNIIQGNKVQNYDQLVTYLQQAYAKLGTSCKNIIASVPQNLATIEQLTYTDKDAELDLQGFVESSISEVSSISLEEANYDYQVLSQSAAGEAVLAVASRKDEIEPLIDAFNAAGMKLSALDVDIFGQYNAYALWINHFAPELAAEKVAIFGVYAAQTYALVIQDGKILYKQETSVSEEQLNQLIQRTYQVTEEKAEEIINSPQKPSDYQESVANYFNQQITQEIQRVLQFYYTTQTADDMTDIKHILLTGEAARQEGIAQTVASQTNADVQCVHPARYFADNLKTDKQQFELDAPTLTRAFGLAVRGL
>NZ_FFCX01000017.1|WP_002219786.1|31471_33868_+|penicillin-binding-protein-1A
MIKKILTTCFGLVFGFCVFGVGLVAIAILVTYPKLPSLDSLQHYQPKMPLTIYSADGEVIGMYGEQRREFTKIGDFPEVLRNAVIAAEDKRFYRHWGVDVWGVARAAVGNVVSGSVQSGASTITQQVAKNFYLSSEKTFTRKFNEVLLAYKIEQSLSKDKILELYFNQIYLGQRAYGFASAAQIYFNKNVRDLTLAEAAMLAGLPKAPSAYNPIVNPERAKLRQKYILNNMLEEKMITVQQRDQALNEELHYERFVRKIDQSALYVAEMVRQELYEKYGEDAYTQGFKVYTTVRADHQKVATEALRKALRNFDRGSSYRGAENYIDLSKSEDVEETVSQYLSGLYTVDKMVPAVVLDVTKKKNVVIQLPGGRRVTLDRRALGFAARAVNNEKMGEDRIRRGAVIRVKNNGGRWAVVQEPLLQGALVSLDAKTGAVRALVGGYDFHSKTFNRAVQAMRQPGSTFKPFVYSAALSKGMTASTVVNDAPISLPGKGPNGSVWTPKNSDGRYSGYITLRQALTASKNMVSIRILMSIGVGYAQQYIRRFGFRSSELPASLSMALGTGETTPLKVAEAYSVFANGGYRVSSHVIDKIYDRDGRLRAQMQPLVAGQNAPQAIDPRNAYIMYKIMQDVVRVGTARGAAALGRTDIAGKTGTTNDNKDAWFVGFNPDVVTAVYIGFDKPKSMGRVGYGGTIAVPVWVDYMRFALKGKQGKGMKMPEGVVSSNGEYYMKERMVTDPGLTLDNSGIAPQPSRRAKEDDGGAAEGGRQAADDEVRQDMQETPVLPSNTGSKQQQLDSLF
>NZ_FFCX01000017.1|WP_002248759.1|33988_34618_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MNLFQNAKFFTTINHLKDLPDTPLEIAFVGRSNAGKSSAINTLTNHVRLAYVSKTPGRTQHINFFELQNGNFMVDLPGYGYAQVPEAVRAHWVNLLGDYLQQRKQLIGLVLIMDARHPLKELDIRMLDFFHTTGRPVHILLSKADKLSKNEQIKTLSQVKKLLKPYSDRQNISVQLFSSLKKQGIDEANRTVGSWLDAADAAASSPEEN
>NZ_FFCX01000017.1|WP_002214509.1|34823_35447_+|cytochrome-c4
MKRLTLLAFVLAAGAVSASPKADVEKGKQVAATVCAACHAADGNSGIAMYPRLAAQHTAYIYHQTIGIRDGKRTHGSAAVMKPVVMNLSDQDILNVSAFYAKQQPKSGEANPKENPELGAKIYRGGLSDKKVPACMSCHGPSGAGMPGGGSEIQAYPRLGGQHQAYIVEQMNAYKSGQRKNTIMEDIANRMSEEDLKAVANFIQGLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_FFCX01000017_1	1.2\|22757\|50\|NZ_FFCX01000017\|CRISPRCasFinder	22757-22806	50	NZ_FFCX01000015.1	45613-45662	1.0
NZ_FFCX01000017_1	1.2\|22757\|50\|NZ_FFCX01000017\|CRISPRCasFinder	22757-22806	50	NZ_FFCX01000046.1	13931-13980	1.0
NZ_FFCX01000017_1	1.2\|22757\|50\|NZ_FFCX01000017\|CRISPRCasFinder	22757-22806	50	NZ_FFCX01000048.1	5012-5061	1.0
NZ_FFCX01000017_1	1.2\|22757\|50\|NZ_FFCX01000017\|CRISPRCasFinder	22757-22806	50	NZ_FFCX01000053.1	8855-8904	1.0
NZ_FFCX01000017_1	1.2\|22757\|50\|NZ_FFCX01000017\|CRISPRCasFinder	22757-22806	50	NZ_FFCX01000053.1	10152-10201	1.0
NZ_FFCX01000017_1	1.2\|22757\|50\|NZ_FFCX01000017\|CRISPRCasFinder	22757-22806	50	NZ_FFCX01000053.1	10304-10353	1.0

1. spacer 1.2|22757|50|NZ_FFCX01000017|CRISPRCasFinder matches to position: 45613-45662, mismatch: 0, identity: 1.0

tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	CRISPR spacer
tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	Protospacer
**************************************************

2. spacer 1.2|22757|50|NZ_FFCX01000017|CRISPRCasFinder matches to position: 13931-13980, mismatch: 0, identity: 1.0

tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	CRISPR spacer
tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	Protospacer
**************************************************

3. spacer 1.2|22757|50|NZ_FFCX01000017|CRISPRCasFinder matches to position: 5012-5061, mismatch: 0, identity: 1.0

tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	CRISPR spacer
tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	Protospacer
**************************************************

4. spacer 1.2|22757|50|NZ_FFCX01000017|CRISPRCasFinder matches to position: 8855-8904, mismatch: 0, identity: 1.0

tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	CRISPR spacer
tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	Protospacer
**************************************************

5. spacer 1.2|22757|50|NZ_FFCX01000017|CRISPRCasFinder matches to position: 10152-10201, mismatch: 0, identity: 1.0

tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	CRISPR spacer
tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	Protospacer
**************************************************

6. spacer 1.2|22757|50|NZ_FFCX01000017|CRISPRCasFinder matches to position: 10304-10353, mismatch: 0, identity: 1.0

tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	CRISPR spacer
tggaatttcaatgcctcaagaatttatcggaaaaaaccaaaacccttccg	Protospacer
**************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage