CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP031225	Pseudomonas amygdali pv. lachrymans str. M301315 chromosome, complete genome	3 crisprs	DEDDh,csa3,RT,cas3,DinG,PD-DExK	2	1	21
CP031228	Pseudomonas amygdali pv. lachrymans str. M301315 plasmid pPla107-2	0 crisprs	NA	0	0	0
CP031227	Pseudomonas amygdali pv. lachrymans str. M301315 plasmid pPla107-1, complete sequence	0 crisprs	NA	0	0	1
CP031226	Pseudomonas amygdali pv. lachrymans str. M301315 plasmid pMPPla107, complete sequence	0 crisprs	DEDDh,cas14j,cas3f,cas6f,cas7f,WYL	0	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031225_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031225_1

185035-185114

Orphan

Consensus_repeat	Method
GATCTCAACTATCGTGCGACGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031225_1

>merge|CP031225|1|185035-185114|CRISPRCasFinder
GATCTCAACTATCGTGCGACGCTCTGCGTCCGATCTTGAACAGGCGGCGGGGAGAAGATCTCGACTATCGTGCGACGCTC

>CP031225|1|1|185035-185114|CRISPRCasFinder
GATCTCAACTATCGTGCGACGCTC	TGCGTCCGATCTTGAACAGGCGGCGGGGAGAA
GATCTCGACTATCGTGCGACGCTC

Protein	Signature genes	Signature genes Name	Protein_function
CP031225.1\|AXH54064.1\|191616_192072_+\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
CP031225.1\|AXH54060.1\|188169_189147_+\|taurine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226904
CP031225.1\|AXH54052.1\|180048_180711_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP031225.1\|AXH54048.1\|173855_174953_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
CP031225.1\|AXH54053.1\|180717_181764_-\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
CP031225.1\|AXH54055.1\|182139_182952_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183055
CP031225.1\|AXH54059.1\|186051_187398_-\|outer-membrane-porin,-OprD-family	unknown	unknown	gnl\|CDD\|335381
CP031225.1\|AXH54057.1\|183774_184740_-\|sulfonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270275
CP031225.1\|AXH54065.1\|192141_192630_-\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
CP031225.1\|AXH54051.1\|178482_179859_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
CP031225.1\|AXH54058.1\|185243_185882_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239314
CP031225.1\|AXH54054.1\|181897_182113_-\|transporter	unknown	unknown	gnl\|CDD\|226113
CP031225.1\|AXH54063.1\|191177_191618_-\|hypothetical-protein	unknown	unknown	unknown
CP031225.1\|AXH54061.1\|189172_189958_+\|taurine-ABC-transporter-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|183056
CP031225.1\|AXH54062.1\|189954_190830_+\|taurine-ABC-transporter-permease-TauC	unknown	unknown	gnl\|CDD\|182276
CP031225.1\|AXH54066.1\|192670_192922_-\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|274017
CP031225.1\|AXH54056.1\|182948_183746_-\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	unknown	unknown	gnl\|CDD\|183100
CP031225.1\|AXH54067.1\|192924_193338_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
CP031225.1\|AXH54050.1\|176530_177889_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
CP031225.1\|AXH54049.1\|175093_176461_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994

Protein	Function_ID	Function_description	E-value
CP031225.1\|AXH54064.1\|191616_192072_+\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.10019e-87
CP031225.1\|AXH54060.1\|188169_189147_+\|taurine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226904	COG4521, TauA, ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism].	1.34011e-151
CP031225.1\|AXH54052.1\|180048_180711_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.56473e-09
CP031225.1\|AXH54048.1\|173855_174953_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
CP031225.1\|AXH54053.1\|180717_181764_-\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	2.51718e-29
CP031225.1\|AXH54055.1\|182139_182952_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183055	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional.	1.95866e-172
CP031225.1\|AXH54059.1\|186051_187398_-\|outer-membrane-porin,-OprD-family	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	1.98018e-137
CP031225.1\|AXH54057.1\|183774_184740_-\|sulfonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270275	cd13557, PBP2_SsuA, Substrate binding domain of sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes the sulfonate binding domains SsuA found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.6885e-145
CP031225.1\|AXH54065.1\|192141_192630_-\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	2.01361e-82
CP031225.1\|AXH54051.1\|178482_179859_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	2.39638e-154
CP031225.1\|AXH54058.1\|185243_185882_-\|peroxiredoxin	gnl\|CDD\|239314	cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins.	8.94033e-132
CP031225.1\|AXH54054.1\|181897_182113_-\|transporter	gnl\|CDD\|226113	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism].	1.14695e-16
CP031225.1\|AXH54061.1\|189172_189958_+\|taurine-ABC-transporter-ATP-binding-subunit	gnl\|CDD\|183056	PRK11248, tauB, taurine ABC transporter ATP-binding subunit.	1.78983e-168
CP031225.1\|AXH54062.1\|189954_190830_+\|taurine-ABC-transporter-permease-TauC	gnl\|CDD\|182276	PRK10160, PRK10160, taurine ABC transporter permease TauC.	1.42365e-119
CP031225.1\|AXH54066.1\|192670_192922_-\|glutaredoxin-3	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	3.74372e-49
CP031225.1\|AXH54056.1\|182948_183746_-\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	gnl\|CDD\|183100	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC.	4.68211e-137
CP031225.1\|AXH54067.1\|192924_193338_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.87715e-25
CP031225.1\|AXH54050.1\|176530_177889_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	3.38043e-153
CP031225.1\|AXH54049.1\|175093_176461_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0

>CP031225.1|AXH54057.1|183774_184740_-|sulfonate-ABC-transporter-substrate-binding-protein
MRTVILRRGLVALFAAAVALGAVTQAQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQGVKVQWTEFPGGPQLLEGLNVGSIDFGVTGETPPVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKGKKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPPADARAAFERGSVDAWVIWDPYQAAAEKQLQARTLKDGTGIVDNHQFYLATKPYAQKNPKVIQALIEEVRAVGEWSKAHPDEVTKQVAPLLGLPADITLTSVKRQGYGALFITPPVVAAQQKIADTFYQLKLIPKPLSIADVVWTPPAAVAQAQ
>CP031225.1|AXH54056.1|182948_183746_-|aliphatic-sulfonate-ABC-transporter-permease-SsuC
MSLSASQRIIHRLAPWALPVLLLAVWQLSVSAGWLSTRILPAPSAVIEAGINLVASGEIWTHLAISGWRAGIGFAIGGGIGLALGFITGLSKWGERLLDSSVQMIRNVPHLALIPLVILWFGIDETAKIFLVALGTLFPIYLNTYHGIRNIDPALVEMSRSYGLSGFSLFRHVILPGAMPSILVGVRFALGFMWLTLIVAETISASSGIGYLAMNAREFLQTDIVVLAIVLYAVLGKLADLAARGLERVCLRWHPAYQVSKGGAA
>CP031225.1|AXH54055.1|182139_182952_-|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein
MTSLKQQPPHLLRGIPLAVRNLKKAFGTREVLKDIDLHIPAGQFVAIVGRSGCGKSTLLRLLAGLDKPTEGQLLAGSAPLDDAREDTRLMFQEARLLPWKKIIDNVGLGLSGDWRAQALEALEAVGLAERANEWPAALSGGQKQRVALARALIHKPRLLLLDEPLGALDALTRIEMQQLIEKLWGQYGFTVLLVTHDVSEAVAIADRVILIEEGQIGLDLLVDLPRPRVRGSHRLAALEAEVLNRVLTLPGSPPDPEPFSPLPTQLRWAN
>CP031225.1|AXH54054.1|181897_182113_-|transporter
MTIKAINVRNQFKGTIKEIVHGDVLSEIDVQTASGVVTSVITTRSVKELELVVGSEVIAFVKSTEVSIAKL
>CP031225.1|AXH54053.1|180717_181764_-|RHS-repeat-associated-core-domain-containing-protein
MTSSAQAVLCRYRYDPLDRLASSSPVRQEDIQRFYRKNVLATEIQGALRSTVFQHEDRLLAQQRHVDDLVDTTLLATDQQRSVLQLVDNTGVESMAYSVYGHHPAESGLTSLLGFNGERRDPATGHYLLGNGYRAYNPVLMRFNSPDSLSPFGEGGLNAYGYVGGDPVGFGDPSGHISAGLLDKLLRAGIIILAPKKIPLSQLPGMVDELPYSSATVSSTPSLPIASSTGVGLASKSSISSSSVDPSAGGTLKSMIRNYKEKRENFNRFYKSGAAGQRKADVLKLAETTFREELDVTVKALEVMEASKGTSAFDPERYNILNARFIERKRKYSKRFTPYHEGVKKIRE
>CP031225.1|AXH54052.1|180048_180711_+|TetR/AcrR-family-transcriptional-regulator
MPSAQPRATPMTRAATPRKPQARSQARIDSILDAARTLLAEQGVASLSIYSVAERAGIPPSSVYHFFASVPALLEALTADIHAAFRASLQAPIDHDQLTTWRDLSRIVELRMLAIYNADAAARQLILAQHGLTEINQADRQHDIELGHLMLEVFDRHFQLPALPDDVDVFALAMELGDRVYARSVQLHDEITPRMAEEGMRVFDAYLGLYLPMFLVKRVI
>CP031225.1|AXH54051.1|178482_179859_+|glutamine-synthetase
MSVPPRAVQLNEANAFLKEHPEVLYVDLLIADMNGVVRGKRIERTSLHKVYEKGINLPASLFALDINGSTVESTGLGLDIGDADRICYPIPDTLCNEPWQKRPTAQLLMTMHELEGDPFFADPREVLRQVVAKFDEMGLTICAAFELEFYLIDQENVNGRPQPPRSPISGKRPHSTQVYLIDDLDEYVDCLQDILEGAKEQGIPADAIVKESAPAQFEVNLHHVADAIKACDYAVLLKRLIKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISILDRDGKNIFTSEDPEQNAALRHAIGGVLETLPAQMAFLCPNVNSYRRFGAQFYVPNSPTWGLDNRTVAVRVPTGTADAVRIEHRVAGADANPYLVMASVLAGVHHGLVNKVEPGAPVEGNSYEQHEQSLPNNLRDALRELDDNPVMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>CP031225.1|AXH54050.1|176530_177889_-|glutamine-synthetase
MSTNLDQLTDWLKEHKITEVECMMSDLTGITRGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYELLDPADIDMICRPDQNAVYLVPWAVEPTAQVIHDTYDKQGNPIELSPRNVLKKVLKLYADQGWQPIVAPEMEFYLTKRSDDPDYPLQPPIGRSGRPETGRQSFSIEAANEFDPLFEDVYDWCELQNLDLDTLIHEDGTAQMEINFRHGDALSLADQILVFKRTMREAALKHDVAATFMAKPMTGEPGSAMHLHQSIIDIETGKNIFSNEDGTMSELFLNHVGGLQKFIPELLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDAVPQNRRVENRLPGADANPYLAIAASLLCGFIGMVEGINPSAPVVGRGYERRNLRLPLTIEDALERMENSKTIEKYLGKKFIIGYVAVKRAEHENFKRVISSWEREFLLFAV
>CP031225.1|AXH54049.1|175093_176461_-|aspartate-aminotransferase-family-protein
MSAHNNPQTLEWQALSSEHHLAPFSDYKQLKEKGPRIITRAEGVYLWDSEGNKILDGMSGLWCVAIGYGREELADAASKQMRELPYYNLFFQTAHPPVLELAKAISEIAPQGMNHVFFTGSGSEGNDTMLRMVRHYWALKGQPDKKTIISRVNGYHGSTVAGASLGGMTYMHEQGDLPIPGVVHIPQPYWFGEGGDMTPDEFGVWAAEQLEKKIIELGVENVGAFIAEPIQGAGGVIVPPDSYWPKIKEILSRYDILFAADEVICGFGRTSEWFGSDFYGLKPDMMTIAKGLTSGYVPMGGLIVRDEIVAVLNEGGDFNHGFTYSGHPVAAAVALENIRILREEKIVERVKSETAPYLQKRLRELSDHPLVGEVRGAGLLGAIELVKDKVTRERYTDKGAGMICRTFCFDNGLIMRAVGDTMIIAPPLVISFAEIDELVEKARKCLDLTLAVLQG
>CP031225.1|AXH54048.1|173855_174953_-|polyamine-ABC-transporter-substrate-binding-protein
MKKFGKTLLALSLMGVVAAAAQADDKVLHVYNWSDYIAPDTVAKFEKESGIKVVYDVFDSNETLEAKLLAGKSGYDIVVPSNNFLAKQIKAGVYQELDKSKLPNWKNLNESLLKAVSVSDPDNKHAFPYMWGSIGIGINPDKVKAALGADAPVNSWDLLFKPENAAKLKSCGISFLDSPTEMLPIALHYLGYPTDSQDKKQLAEAEALFMKIRPSIGYFHSSKYISDLANGNICVAVGYSGDIYQAKSRAAEAGGKVKVAYNIPKEGAGSFYDMVAIPKDAENVEGAYKFMTFLMKPEIMAEITNAVRFPNGNAAATALVDKEITSDPGVYPPADVQAKLYAIADLPAATQRIMTRSWTKIKSGK
>CP031225.1|AXH54058.1|185243_185882_-|peroxiredoxin
MTLRLGDIAPDFEQESSEGRIRFHEWLGDSWGVLFSHPADFTPVCTTELGFTAKLKDEFAKRGVKAIALSVDPVDSHIKWIDDINTTQNTQVNFPILADADRKVSDLYDLIHPNASDTLTVRSLFVIDPKKKVRLTITYPASTGRNFHEILRVIDSLQLTDNYKVATPANWVDGDDVVIVPSIKDEAEIKERFPKGYKAVTPYLRLTPQPNR
>CP031225.1|AXH54059.1|186051_187398_-|outer-membrane-porin,-OprD-family
MKKSTLALAVTVAALAQQAGAAGFLEDSKASVSSRTLYFNNDLREGVRASDQRETATGLKFDYLSGFTQGTVGFGLDAQAVMGLHLGGDIQHHTVNTANTVVPTDTDGSSVSDWSRVGANAKMRFSKTELKVGNALAPNLPILVSNDGRLLPQAFEGGILTSKDLDSVTFTAGQLNKSIGRASSNWTDLSVAGATQGSDQFRFAGADWKVTKDLTLQYYYANLEDFYKQHFLGLVHVYPISDNQSFKTDLRYFNSSADGKNSQAAAGYRFNNNGGYASHTGEVDNQTWSAMFTYSLGGHALMVGHQQVGDSGGMVYLGQGNVVDGRGRPEGNGGSSFYLFTDSMINGFNRAGENTTFGQYSYDFAKVGVPGLKAAIAYLSGDDIRDVNRNLGTHSEWERDMRVDYVIQSGVLKGFGTTVRHGTFRGDVATTADTDQTRILFNYTYNFL
>CP031225.1|AXH54060.1|188169_189147_+|taurine-ABC-transporter-substrate-binding-protein
MKLHFSLRLLTALSLTGATFIAQAADFTVAYQTTVDPAKVAQADNAYEKATDSKISWRKFDNGADVITAIASGDVQIGYLGSSPFTAAATRKLPVETFLIATQIGAAEALVARNGSGINSPQDLIGKKVAVPFVSTGHYSLLAALKHWNIDPARVTILNLAPPAIAAAWKRGDIDATYVWDPALGVAKETGKVLITSGELAKVGAPTFDAWIVRKDFANKHPEVVSAFAKVTLDAYARYRQDPAAWIANPANVDKLTRLSGAKASDVPGLLQGNVYPLAAEQTALLGTPTIEAVTKTAAFLKEQGKVDAVLPDYSPYVSARFIPR
>CP031225.1|AXH54061.1|189172_189958_+|taurine-ABC-transporter-ATP-binding-subunit
MALLQLERIGAQYPGAAAPVLADINLSLGPQQLLVALGPSGSGKTSLLNLIAGFIKPGSGRITLDGIPVEGPSAERGVVFQDDALLPWQNVLANVAFGLELAGVDRLERETRAREMLALVDLAGFDQRRIWQLSGGQRQRVGLARALAADPRILLMDEPFGALDAFTREQMQELLLQVWQRTAKPVFLITHDIEEAVFLATDLVLLAPNPGRIAEHLHLDFGRRYAAGESARAIKSDPRFIETREHVLASVFSQRTREQRV
>CP031225.1|AXH54062.1|189954_190830_+|taurine-ABC-transporter-permease-TauC
MSRLEPVGSHELIDSRELTGISKPFAKQPAAPTPKVYLSTRAISILTLVALLTLWWAITAGGWIEPLFLPPPADVLSKGWLLATKGYMDATLWQHLDASLQRIGLALAAAILTAIPIGIAIGHNRIAQGIFDPLIEFYRPIPPLAYLPLIVIWFGIGEFSKVLLIYLAIFAPIAIATATGVRTVDPTKVRAAQSLGATRWQLIRHVVLPSALPDILTGIRIGLGVGWSTLVAAELIAATSGLGFMVQSAAQFLVTDVVVLGILVIAVIAFAMELGLRALQRRLVPWHGQQH
>CP031225.1|AXH54063.1|191177_191618_-|hypothetical-protein
MHGSERKDGMHSTPEEDPRPKLWPRVLGSMAIVGFTVGTIIGRLQQPDPVELEQIEELPAGLALWFNEEPKYQGSTVDGAVVLNVDASGRPWTGQLRFDNRVARWKVERGEKGLVLTLLAARPLHGDWRTEKVDGRWRLEVSLREE
>CP031225.1|AXH54064.1|191616_192072_+|tRNA-(cytidine(34)-2'-O)-methyltransferase
MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTHPDLASCMEKIGNPRLFAFTTKGSRPFHDASFEPDDAFLFGPESRGLPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQHGFA
>CP031225.1|AXH54065.1|192141_192630_-|protein-export-chaperone-SecB
MTDQPNNGAVANEENGPQFSLQRIYVRDLSFEAPKSPAIFRQEWTPTVSLDLNTRQKQLEGDFYEVVLTLSVTVNNGDEVAFIVEVQQAGIFLIKGLDDGAMSHTLGAFCPNILFPYAREAIDNLVVRGSFPALMLAPVNFDALYAQELQRMQEAGETPTVQ
>CP031225.1|AXH54066.1|192670_192922_-|glutaredoxin-3
MAQVIVYSSDYCPYCIRAKQLLQSKSVAFEEIRVDGKPQLRAEMTKKAGRTSVPQIWIGSTHVGGCDDLFALERAGKLDALLA
>CP031225.1|AXH54067.1|192924_193338_-|rhodanese-like-domain-containing-protein
MVAHLLEFATNHYLITGAFVILLGLLIAYELSKGGASLSTRELTALVNSDQGVVIDVRSKKDFTAGHIVGSLNFPQDKVLTRTAELQKYKDKTLIIVDAMGQHAGTTARELLKSGFKAAKLSGGISSWRGDNLPLVK

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Crispr_ID: CP031225_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031225_2

4324084-4324172

Orphan

Consensus_repeat	Method
CCTGTAGGAGCGGACTTGTCCGCGAAGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031225_2

>merge|CP031225|2|4324084-4324172|CRISPRCasFinder
CCTGTAGGAGCGGACTTGTCCGCGAAGAGGCCAACAAGCCGAATGCTGACTTGTAGACTCCTGTAGGAGCGGACTTGTCCGCGAAGAGG

>CP031225|2|2|4324084-4324172|CRISPRCasFinder
CCTGTAGGAGCGGACTTGTCCGCGAAGAGG	CCAACAAGCCGAATGCTGACTTGTAGACT
CCTGTAGGAGCGGACTTGTCCGCGAAGAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP031225.1\|AXH57513.1\|4324335_4325583_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|235968
CP031225.1\|AXH59244.1\|4314253_4315042_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
CP031225.1\|AXH57516.1\|4332917_4335125_-\|peptigoglycan-binding-protein-LysM	unknown	unknown	gnl\|CDD\|225711
CP031225.1\|AXH57518.1\|4335748_4337878_-\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
CP031225.1\|AXH57510.1\|4317315_4318074_-\|siderophore-iron-reductase-FhuF	unknown	unknown	gnl\|CDD\|274875
CP031225.1\|AXH57519.1\|4338054_4338642_+\|YecA-family-protein	unknown	unknown	gnl\|CDD\|225855
CP031225.1\|AXH57517.1\|4335220_4335655_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|179596
CP031225.1\|AXH57505.1\|4313730_4314081_-\|hypothetical-protein	unknown	unknown	unknown
CP031225.1\|AXH57514.1\|4330711_4332277_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|214599
CP031225.1\|AXH57509.1\|4316580_4317315_+\|4'-phosphopantetheinyl-transferase	unknown	unknown	gnl\|CDD\|225524
CP031225.1\|AXH57520.1\|4338652_4339057_+\|DUF454-domain-containing-protein	unknown	unknown	gnl\|CDD\|377291
CP031225.1\|AXH59246.1\|4326331_4327309_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|225581
CP031225.1\|AXH59247.1\|4328932_4329910_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|225581
CP031225.1\|AXH57511.1\|4318031_4319642_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236724
CP031225.1\|AXH57512.1\|4321099_4324012_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|235966
CP031225.1\|AXH59245.1\|4319646_4320390_-\|response-regulator	unknown	unknown	gnl\|CDD\|223816
CP031225.1\|AXH57506.1\|4315109_4315643_-\|transposase	unknown	unknown	gnl\|CDD\|224854
CP031225.1\|AXH57515.1\|4332527_4332878_+\|topoisomerase	unknown	unknown	gnl\|CDD\|235840
CP031225.1\|AXH57507.1\|4315840_4316035_-\|hypothetical-protein	unknown	unknown	unknown
CP031225.1\|AXH57508.1\|4316222_4316441_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP031225.1\|AXH57513.1\|4324335_4325583_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|235968	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated.	0
CP031225.1\|AXH59244.1\|4314253_4315042_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	1.60854e-56
CP031225.1\|AXH57516.1\|4332917_4335125_-\|peptigoglycan-binding-protein-LysM	gnl\|CDD\|225711	COG3170, FimV, Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion].	1.25526e-57
CP031225.1\|AXH57518.1\|4335748_4337878_-\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
CP031225.1\|AXH59247.1\|4328932_4329910_+\|IS5-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	9.02304e-30
CP031225.1\|AXH57519.1\|4338054_4338642_+\|YecA-family-protein	gnl\|CDD\|225855	COG3318, COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA [General function prediction only].	2.86735e-41
CP031225.1\|AXH57514.1\|4330711_4332277_-\|PAS-domain-S-box-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	2.46947e-64
CP031225.1\|AXH57509.1\|4316580_4317315_+\|4'-phosphopantetheinyl-transferase	gnl\|CDD\|225524	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism].	1.88447e-64
CP031225.1\|AXH57520.1\|4338652_4339057_+\|DUF454-domain-containing-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	2.34458e-50
CP031225.1\|AXH59246.1\|4326331_4327309_-\|IS5-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	9.02304e-30
CP031225.1\|AXH57510.1\|4317315_4318074_-\|siderophore-iron-reductase-FhuF	gnl\|CDD\|274875	TIGR03951, Fe_III_red_FhuF, siderophore-iron reductase FhuF. Members of this protein family, including FhuF of E. coli, are siderophore ferric iron reductases that appear to play a role in iron removal from certain hydroxamate-type siderophores, including coprogen, ferrichrome, ferrioxamine B, and aerobactin. Genes occur in regularly in siderophore transport and/or biosynthesis clusters. The C-terminus includes four Cys residues in a C-C-10(X)-C-X-X-C motif that binds a 2Fe-2S cluster. Family TIGR03950 is similar, but especially in the C-terminal region, but likely acts on a different panel of siderophores. [Energy metabolism, Electron transport, Transport and binding proteins, Cations and iron carrying compounds].	5.65463e-67
CP031225.1\|AXH57511.1\|4318031_4319642_-\|HAMP-domain-containing-protein	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	7.47466e-86
CP031225.1\|AXH57512.1\|4321099_4324012_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|235966	PRK07207, PRK07207, ribonucleoside-diphosphate reductase subunit alpha.	0
CP031225.1\|AXH59245.1\|4319646_4320390_-\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.76846e-82
CP031225.1\|AXH57506.1\|4315109_4315643_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00235085
CP031225.1\|AXH57515.1\|4332527_4332878_+\|topoisomerase	gnl\|CDD\|235840	PRK06599, PRK06599, DNA topoisomerase I; Validated.	1.59489e-07
CP031225.1\|AXH57517.1\|4335220_4335655_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|179596	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional.	6.37625e-30

>CP031225.1|AXH57512.1|4321099_4324012_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MQTDTTRENSPTGAPQASQTPQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRAPEDQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ
>CP031225.1|AXH59245.1|4319646_4320390_-|response-regulator
MALEPHTWHVLIVEDDQRLAELTSDYLHNNGLRVSIEGNGALAAARIIAEQPDLVILDLMLPGEDGFSICRSVRDRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFTALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQDMSGHVFSG
>CP031225.1|AXH57511.1|4318031_4319642_-|HAMP-domain-containing-protein
MNSIFLRIYGGMLGVLVLVALLGVFALHVLNQSRGEQYRERLAHGTFTVMADNLVPLNDIERRRALAIWERLLGIPLSLQSIEQAGLDSGARGRLARGQVVVEQIGPHAARVYRQLSDKEPLLLSGEVQQITEQLARATIYLLIDELVRFPVNEQPARLQALRIDKGFGFDLHLLALDQADLDDDQRRRIYEGDTVMALGKGGDSIRVLAGIVDTNWVLEIGPLYQMNPYPLHWLLVIALMGLCFIGLVVYLLVRRLERRVLELEAAATQIAQGSLQTRVPTEGSDSVGRVAAAFNSMAEHLQRSLMIQRELVRAVSHELRTPVARLRFGLEMVSDATTPEARRKYMRGMDSDIQDLDKLVDEMLTYARLEQGAPTLNFQRVDLDALIDQVIAELAPLRADVRVSRGECLTSEEGEAAWVEAEPRYLHRAVQNLVSNAMRHAENEVRISYRLEAQQCRIDVDDDGPGVPEEAWEQIFTPFMRIDDSRTRASGGHGLGLSIVRRIIHWHEGRALIGRSASLGGACFSLSWPRTQVPR
>CP031225.1|AXH57510.1|4317315_4318074_-|siderophore-iron-reductase-FhuF
MFQPVLAAYAGAALSAQLFSGPLERFGQTLLAADDSRPDSRPVVALPDLLQAERLDQLLLSSYGPQLMPSQLPVLVSQWAKFYFMQVIPPVLVASLVHGWHWPLALEQVALAVDERGLPNGVRLAGEGEAWRGIPADPFQQFAGLLDDNLQPFIAALSAYGGLPCAVLWSSAGDYLEGCLVQLATCSTVSLAPGLALLSERKRPDGRANPLFQAVRYVAQAQGGEPRRQRRVCCLSHRVEWVGRCEHCPLSG
>CP031225.1|AXH57509.1|4316580_4317315_+|4'-phosphopantetheinyl-transferase
MPPMTQLPDLPVCCPELVQHWPLPHALPGAVLVSGRFDPHTLIDGDFQRCAVQMPASIQRSVAKRQAEFLAGRLCAREAMRQLDGRLHVPAVGEDRAPVWPADVCGSITHSTGWAAAVVAHKRQWRGLGLDTENLLSHERASRLAGEILTAAELADMAAGAQDQIALRVTLTFSIKEALFKALYPIVQKRFYFEDAQLLEWSADGSARLRLLIDLSSEWHARKELDGQFSVQDDHLLSLVAVEG
>CP031225.1|AXH57508.1|4316222_4316441_-|hypothetical-protein
MPFRTLRVLLATQSVATCITTLERGNENPTIVRRSASHAVPDAPRPLATQSVATCITTLERGNENFNYRVSL
>CP031225.1|AXH57507.1|4315840_4316035_-|hypothetical-protein
MGTRIQLSCDALRRMPFRTRRVLLATQSVATCITTLERGNENPTIVRRSASHAVLDAPRPLGDA
>CP031225.1|AXH57506.1|4315109_4315643_-|transposase
MGRSRYTITEPEKPHFLTCTVVEWLPLFTRPALVDVLLNAWRYQQLHQGLQLYGYVILENHLHFVAQAPELDKCVNSFKSFTARQIIHVLEKANAQSALQRLRFVKPMHKTDRVYQVWQEGSHAELVWNEAVMRQKLDYIHHNPVKRGYVDVGEHWRYSSARDYEGQRGLIDIQRWY
>CP031225.1|AXH59244.1|4314253_4315042_+|dienelactone-hydrolase-family-protein
MRVWIAMIMMGLTGLAQAAIKTEQIDYKSADGTKLVGYYAYDDAVKGPRPGVLVVHEWWGLNDYAKRRARDLAALGYSAMAIDMYGEGKNTEHPKDAMAFMQAALKDSDAADKRFDAGLEQLKKQPQTDLKKIAAIGYCFGGKIVLDAARRGEPLLGVVSFHGALVTNTPAKPGIKVPMLVEHGAKDSMVTAENVAAFKKEMDDAKADYKFVSIDGAKHGFTNPDADRLSHGDHGGPDIGYNKAADERSWADMKVFFKKIFG
>CP031225.1|AXH57505.1|4313730_4314081_-|hypothetical-protein
MLNLNKFFLALAFLGGSAAAQAGDGRLDVARIEFGKTSERLDDANSWGHALGEQAHTNVSVGTLYSPPVYGTLTGTHNGVPVSREILLGSYDVTQHVPVSARLLSTDATMSFHSLS
>CP031225.1|AXH57513.1|4324335_4325583_+|ribonucleotide-diphosphate-reductase-subunit-beta
MLSWDEFDKEDGEVVAKATNAGHANEANMDRLDSAGGLAAQEARAVTAADSAALIRAKKALDALDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD
>CP031225.1|AXH59246.1|4326331_4327309_-|IS5-family-transposase
MQKTFSELEYTGKKKQTRRDRFLADLEQLVPWALLEAQVAPFYSNTAGKRGRPAIGVSRMLRMYVVQQCFGFSDEGCEDAVYDSQAIRGFMGIDLGRESAPDATTLLRFRRLLEVHQLTRLLFETINQHLASRGLLLKEGTIVDATLIAAPPSVKNREGKRDPEMHQARKGNQWHFGMKAHIGVDATSGLVHSVVGTAANVADVTQVGQLLHGDETYVSGDAGYTGAAKRPEHAERDVIWSIAERPSSYKQHGEGSVLYRVKRKIEYAKAQLRAKVEHPFQVIKVRFNHRKVRYRGLEKNTAQLFSLFGLANLMLAKRYLQQTAG
>CP031225.1|AXH59247.1|4328932_4329910_+|IS5-family-transposase
MQKTFSELEYTGKKKQTRRDRFLADLEQLVPWALLEAQVAPFYSNTAGKRGRPAIGVSRMLRMYVVQQCFGFSDEGCEDAVYDSQAIRGFMGIDLGRESAPDATTLLRFRRLLEVHQLTRLLFETINQHLASRGLLLKEGTIVDATLIAAPPSVKNREGKRDPEMHQARKGNQWHFGMKAHIGVDATSGLVHSVVGTAANVADVTQVGQLLHGDETYVSGDAGYTGAAKRPEHAERDVIWSIAERPSSYKQHGEGSVLYRVKRKIEYAKAQLRAKVEHPFQVIKVRFNHRKVRYRGLEKNTAQLFSLFGLANLMLAKRYLQQTAG
>CP031225.1|AXH57514.1|4330711_4332277_-|PAS-domain-S-box-protein
MRVNMPITQTERTFPASERLISTTDLNSHITYCNDAFVALSGFTREELVGQPHNLVRHPDMPASVFAHMWETIKQGKPWMGVVKNRSKQGDYYWVSAYVTAVYENGRIVGYESVRSLPTRDQVRRAEALYARLRAGKSAVSATSSAAYHLVRQLPMILCALALAVGVYLLDDLPSIIMIPIVMVVLGGFLEMRQRRSIRNTLEEHPKAFTSSLVALTYSDNRGPQAQLDLAMLSEEARLQTALTRLADTGESVRQHAGRSAQLSLRQAESLDQQRSEADQSATAINQMAATIQEVTHNVQNTAHAAEEADKLAQQGRGLADESLLAIRHMANSVTDIGNAVGELASATQSIGSVVDVITSIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQSSTEQIQQIITSLRDGADRAVQTANKGEQISQESVASVEAVQKALDGISQSVTRITGMSQQMASASEEQSHVAENISQQITRIAQLCDESASQAQQGSQISGELEEMAQYLHSLAERFSR
>CP031225.1|AXH57515.1|4332527_4332878_+|topoisomerase
MARNTTSALAALIRIFRRLLSRVAGQTADQQQHVQPTKPAAHSPQPQKPVKTSRAKRPEKRREPATPKLPAKPAAPACPHCKKTMVIKVARTGKNAGEFWGCVAYPKCRGIRPIFR
>CP031225.1|AXH57516.1|4332917_4335125_-|peptigoglycan-binding-protein-LysM
MLKSSLAAVEGAGRRARGVFCKSVIAASLLACSTLASALGLGEITLHSALNQPLNAEIQLLETGGLSNEDVVARLASPEAFAKAGIERVFFLNDLRFTPVLRGDRGVIRVVSTKPVTEPYLSFLVQLARPNGDLLHEYTVLLDPATSPQGLAATRSRNTQRSTASAQESRMPVAPPAAVQGKHYTVANGDTLNGIASRLQGPGNKVSASQLADGIRLLNPQAFAAGAGSALKVGQDLLLPDSAILPSAAAPVASPEASSPKPAELQRTAEQLSAAAIENQQLAQSLEALKAQTQELQEQMSGKDKQITALRSDLAVAQSAARPATPAAPAMTPATPAQPAAAPTPGTDSFLSLPILLAAVLIVLLLVAFAYSRRRQQRKQSAAPAVAPDEQLIKPAQATMLPVFEVPAVAPQPVVQPPPTPAATKPPAAQRSAGSTPDALDGVSIYIAYGRFTEAMGILRSALEKQPERDDIRIRLLELLAEQGDGSGFVREEQSALEHGVDPQTIQDIRDRFPQIKAAEVAPVAAVVPAAAVAATTLSFEKTEPEPESAAYLQPDLEPEPAAQLDETAAAALNPQDEFQLNLDDLSMDADWDLVDPFDSPPPRIKPAAATAAPAPADVDPGFSSDLTQLPEVFELSDEQFLSDFSEPDVIEPIEVVAPAAADDLSDDFLDSFMSDDAEFDLLDLEEPPLSQINQAQVLIEEGDLESAREILQQVIAESDEEHRRMARELLAGIS
>CP031225.1|AXH57517.1|4335220_4335655_-|MarR-family-transcriptional-regulator
MPLTDEHRFGMQLGHLTRGWRAELDRRLADLGLSQARWLVLLHLARFTEPPTQRELAQSVGVEGPTLARLLDSLEKQGLVQRQAVVEDRRAKKILLSDTALPLIEKIETIANVLRIELFEGVSEEDLRVSMRVHSQILANLERS
>CP031225.1|AXH57518.1|4335748_4337878_-|DNA-helicase-RecQ
MLEQAQRVLKDIFGYDSFRGRQGAIIERVANGGDALVLMPTGGGKSLCFQVPGLLREGLCVVVSPLIALMDDQVATLDELGVSAAALNSTLSAEQQRELANRIRLGEVKMLYLAPERLVQPRMLSFLQNLQIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPDVPRIALTATADKRTREEIVTRLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKKVDEVAVFLSENGYPALPYHAGLPSETRAANQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHMDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLMLKQMLQNSEGDERHKRLEQHKLDAMLALCEETRCRRQTLLAYFDEDMPNPCGHCDNCVDGVQTWDATEPARQALSAIYRTGQRYGVGHLVDVLLGKSNDKVESFGHQHLSVFGVGKARTEAEWRSLFRQLVARGLADIDLEGYGGLRLSDTCRPLLRGEVTLELRRDLKPQTTSKSSSGSPASQLVRGEEREQWEALRALRRKLAEEHAVPPYVIFPDSTLLEMLRSKPGSMAEMARVGGVGARKLERYGEAFLEVLSGKAEAPRVVADVRHELISLARAGMTPTQIAGQLQCSEKNVYTLLAEAIGKQQLSIEQALDLPEDLLGEVQDAFLDGEGELPPVSAIAEQFAGRVPEGVLYCVRAALQSEFEV
>CP031225.1|AXH57519.1|4338054_4338642_+|YecA-family-protein
MSFAEQLTRLQVFLDADELHEEALDYVAAHGYLTALSICAEDVPEREWIDALFSEPPQYSSEAQQTEVEATLIALKAHIARQLASDEEFELPCDLDLGDDPDDSDLRGWCIGFMEGVFLRENAWFESAEEEVSEMLLPIMVGSGLFDEQPEFADIAQDANLMDDMIVQIPEALTALYLLCQAPDEKPAILKPRHH
>CP031225.1|AXH57520.1|4338652_4339057_+|DUF454-domain-containing-protein
MAQDPPRTSRHRSVRYLLIAVGWLSVVSGVIGIFLPVLPTTPFLLLAAACFARSSPRFYHWLVEHPRLGPWIRDYLEGNGIPLKGKVYAIGLIWLSISLSCYLIAQPWARAFMLTSAVLVTIYIIRQKTRPPRK

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Crispr_ID: CP031225_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031225_3

4942524-4943153

Orphan

Consensus_repeat	Method
GTTGCNCCGGGCAACACT	CRT

17 spacers

The CRISPR arrays of CP031225_3

>merge|CP031225|3|4942524-4943153|CRT
GTTGCCCCGGGCAACACTCCGAACTCCGACCTGGGTGTTGCACCGGGCAACACTGCGAACACCGATCCAGGTGTTGCTCCGGGCAACACTCCGGACACCGATCTGGCTGTTGCCCCGGGCAACACTTCGAACTCCGACCCGGGTGTTGCCCCGGGCAACACTCCGAACTCCGACCTGGGTGTTGCACCGGGCAACACTCCGAACTCCGACCTGGGTGTTGCACCGGGCAACACTCCGAACTCCGACCTGGGTGTTGCACCGGGCAACACTGCGAACACCGATCCAAGTGTTGCCCAGGGCAACACTCCGGACGCCGAGCTGGCTGTTGCCCCGGGCAACACTTCGAACTCCGACCCGGGTGTTGCCCCGGGCAACACTCCGGACACCAATCTGGCTGTTGCCCCGGGCAACACTTCGAACTCCGACCCGGGTGTTGCCCCGGGCAACACTCCGGACGCCGACCTGGGTGTTGCACCGGGCAACACTCCGAACTCCGACCTGGGTGTTGCACCGGGCAACACTGCGAACGCCGATCCAGGTGTTGCCCCGGGCAACACTCCGGACGCCGAGCTGGCTGTTGCCACTGGCAACACTCCGGCCATCGATCTGGGTGATGCCCCGGGAATCACT

>CP031225|3|1|4942524-4943153|CRT
GTTGCCCCGGGCAACACT	CCGAACTCCGACCTGGGT
GTTGCACCGGGCAACACT	GCGAACACCGATCCAGGT
GTTGCTCCGGGCAACACT	CCGGACACCGATCTGGCT
GTTGCCCCGGGCAACACT	TCGAACTCCGACCCGGGT
GTTGCCCCGGGCAACACT	CCGAACTCCGACCTGGGT
GTTGCACCGGGCAACACT	CCGAACTCCGACCTGGGT
GTTGCACCGGGCAACACT	CCGAACTCCGACCTGGGT
GTTGCACCGGGCAACACT	GCGAACACCGATCCAAGT
GTTGCCCAGGGCAACACT	CCGGACGCCGAGCTGGCT
GTTGCCCCGGGCAACACT	TCGAACTCCGACCCGGGT
GTTGCCCCGGGCAACACT	CCGGACACCAATCTGGCT
GTTGCCCCGGGCAACACT	TCGAACTCCGACCCGGGT
GTTGCCCCGGGCAACACT	CCGGACGCCGACCTGGGT
GTTGCACCGGGCAACACT	CCGAACTCCGACCTGGGT
GTTGCACCGGGCAACACT	GCGAACGCCGATCCAGGT
GTTGCCCCGGGCAACACT	CCGGACGCCGAGCTGGCT
GTTGCCACTGGCAACACT	CCGGCCATCGATCTGGGT
GATGCCCCGGGAATCACT

Protein	Signature genes	Signature genes Name	Protein_function
CP031225.1\|AXH57996.1\|4941108_4942470_+\|hypothetical-protein	unknown	unknown	unknown
CP031225.1\|AXH57991.1\|4937362_4937692_+\|hypothetical-protein	unknown	unknown	unknown
CP031225.1\|AXH58006.1\|4952329_4952899_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163460
CP031225.1\|AXH58001.1\|4946256_4946544_+\|hypothetical-protein	unknown	unknown	unknown
CP031225.1\|AXH58004.1\|4948828_4950781_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350677
CP031225.1\|AXH58005.1\|4951102_4951786_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376158
CP031225.1\|AXH58002.1\|4946640_4946820_+\|hypothetical-protein	unknown	unknown	unknown
CP031225.1\|AXH57989.1\|4934848_4935253_-\|hypothetical-protein	unknown	unknown	unknown
CP031225.1\|AXH57998.1\|4944051_4944615_+\|DUF3158-family-protein	unknown	unknown	gnl\|CDD\|314329
CP031225.1\|AXH57992.1\|4937693_4938098_+\|hypothetical-protein	unknown	unknown	unknown
CP031225.1\|AXH57999.1\|4944620_4945454_+\|phage-regulatory-protein	unknown	unknown	gnl\|CDD\|378235
CP031225.1\|AXH58003.1\|4947257_4948826_+\|hypothetical-protein	unknown	unknown	unknown
CP031225.1\|AXH57994.1\|4938595_4940338_+\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|213858
CP031225.1\|AXH59300.1\|4938094_4938340_+\|hypothetical-protein	unknown	unknown	unknown
CP031225.1\|AXH57993.1\|4938275_4938593_+\|Arc-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|367702
CP031225.1\|AXH57995.1\|4940374_4941112_+\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
CP031225.1\|AXH57990.1\|4935496_4936183_+\|hypothetical-protein	unknown	unknown	unknown
CP031225.1\|AXH57988.1\|4933123_4934470_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
CP031225.1\|AXH58000.1\|4945465_4945927_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|169261
CP031225.1\|AXH57997.1\|4943275_4944055_+\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274771

Protein	Function_ID	Function_description	E-value
CP031225.1\|AXH58006.1\|4952329_4952899_+\|hypothetical-protein	gnl\|CDD\|163460	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family. This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions].	1.90212e-58
CP031225.1\|AXH57999.1\|4944620_4945454_+\|phage-regulatory-protein	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	2.07652e-30
CP031225.1\|AXH58004.1\|4948828_4950781_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350677	cd17919, DEXHc_Snf, DEXH/Q-box helicase domain of DEAD-like helicase Snf family proteins. Sucrose Non-Fermenting (SNF) proteins DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.3187e-43
CP031225.1\|AXH57994.1\|4938595_4940338_+\|chromosome-partitioning-protein-ParB	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	5.12922e-144
CP031225.1\|AXH58005.1\|4951102_4951786_-\|hypothetical-protein	gnl\|CDD\|376158	pfam18735, HEPN_RiboL-PSP, RiboL-PSP-HEPN. RiboL-PSP-HEPN. Fused to endoRNase L-PSP ; in operon with ParB.	0.00324488
CP031225.1\|AXH57993.1\|4938275_4938593_+\|Arc-family-DNA-binding-protein	gnl\|CDD\|367702	pfam03869, Arc, Arc-like DNA binding domain. Arc repressor act by he cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognize bases in the major groove.	8.28024e-08
CP031225.1\|AXH57995.1\|4940374_4941112_+\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	1.79878e-41
CP031225.1\|AXH57998.1\|4944051_4944615_+\|DUF3158-family-protein	gnl\|CDD\|314329	pfam11358, DUF3158, Protein of unknown function (DUF3158). Some members in this family of proteins are annotated as integrase regulator R however this cannot be confirmed. This family of proteins with unknown function appear to be restricted to Proteobacteria.	1.97993e-64
CP031225.1\|AXH57988.1\|4933123_4934470_+\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
CP031225.1\|AXH58000.1\|4945465_4945927_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|169261	PRK08182, PRK08182, single-stranded DNA-binding protein; Provisional.	3.26866e-65
CP031225.1\|AXH57997.1\|4943275_4944055_+\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|274771	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.	1.10603e-108

>CP031225.1|AXH57996.1|4941108_4942470_+|hypothetical-protein
MTKMNRRPPLAVAINAAAGTLQNHLLLQQMKLAQQQNAGSGSAPSDTESVRDEPYAGVVFSGNPHETVPRGLLLDDRLSPLERNVWQVFRLLINGDGVTAFPSYEKLRPYLGSSPGKSASKETVAKALTVLRLTRWLSLGQRVRDSVSGRVQGNVYILHDEPVGCAEAMEIDHHYMQLVGQALEHANKAVRVVADHAFKEFAAATGTMPSRLEVIEQRWQQQGWHDAPQAIEHAQDGTEFGIRTKGSDESDLLSSDSELSKKSPGANLKTPGSDSELSLNSASFGLVRIPNSYSTYTNTNTSVCKSFVPREAQESAPDLPSGFERFTQDQRDKAMIALQRVEPGLRTPLLDQWQHRCKSGSVKNPFGYLLSCTQKALSGEFNAQWQAPSAATQQPQVAASHSRSPTAQPPAPTQVPHPPVTRASPRERDASSLATGRDAMLSIKQMVRPRTQG
>CP031225.1|AXH57995.1|4940374_4941112_+|DUF2857-domain-containing-protein
MSKRHNPLNEAMVAQILHHLRNGEVKRCIDMGLDPEILVLLQQPSSQSVLLNSNVIWCQVAIDPDMVKRLLSNKERTDEEIRIVQRALRLGATTPMLQQFFGMSPQEVSLQRVLVGVPGKPGRFRDLPDDTPLWHRFVQLMADLNVDHTDGVALLDVAMLLTEEINIPAEEQDSHSPEPITLGLVWNKIQQWLAQDLYPPGKNRKSARLVLMSESRRLTKANPKGRAPERGLEESAAGKVEGERM
>CP031225.1|AXH57994.1|4938595_4940338_+|chromosome-partitioning-protein-ParB
MASKLTADEITGKLLQGSFSRSGPSVDRLPDPIADTPMVLTLDELSAYEHNPRTVTNIKYQEIKDSIRVRGLDQPPQVTRRPGEKKFIIRNGGNTRLSILRELYKETGDERFYRISVLFRPWDGERGEIIALTGHLAENDLRGNLMFIERAVGIENARAIYEQETGEPISQRELAKRLKADGYPVSQSHISKMQETIRCLLPVIPAALYSGLGKPQIERLLALRKAAAQTWQTHTEGKTNVTDFEVLFQDVLSMFDGDASEFVCERVQDELISHMKEGTGRTYEQVLLNVNENLTMARRSSVIETPLRLPPTPQVQPEAESESDAYRPQEDQEPKTLQSESLTQSPDTQVTAPSASALKTDKPLPPPLSDEERIARLEAHVVTPVSTTDRVFEIKRQVAALDGEELPDFKANALVSIPVQAGGLHPISDVWYIERIMDQPDQLRQVIAQLAHEIATTAGLNRDTVAQVPGGLGFICHEPPMDLELTELANNTLTLLQAISGVYAIALNQQTPEAPLDVAEFQFTAALGQLLLGSPRYEDREAVLAGRLDDACIVKLFRLIRLGRRLVELEAMNVDEPYTS
>CP031225.1|AXH57993.1|4938275_4938593_+|Arc-family-DNA-binding-protein
MLALNCAAHTPSAMMENAMLNSETVNIRDDDKDEKFVVRFPMGMRARLSMAAKASHRSMNSECVHRIDCSLKQDQEIARLKAVIDVLLNGGTPASNVVQLSEAGQ
>CP031225.1|AXH59300.1|4938094_4938340_+|hypothetical-protein
MSNMPASIRGAKKSLQALADFAISQGWAVHRTHGGHVKFTKGGCSPIFTSFTPSDHRAGLNARAQLRRAHPLSHDGERHVE
>CP031225.1|AXH57992.1|4937693_4938098_+|hypothetical-protein
MARHYNILEEDLPSQSDRERDRLRIEKAITEYFNRGGSIQRVEADQRVNAPSFIINAEKTALLKAGTESQKQKKANALSDTELARLLRAHCTAGSSLFSAAASLNQTRKRCEAIARRYQIPFRSAAFGNARARS
>CP031225.1|AXH57991.1|4937362_4937692_+|hypothetical-protein
MNTCAKALLITDECRNCGQHLPAHVAMTAAECPVCHSGDLVEVLTVETKALDAALNQMPRCMEYTVVFRMEDGCSRRSFMEKLTETFADQEVEILEIQAGNKLSGSEEQ
>CP031225.1|AXH57990.1|4935496_4936183_+|hypothetical-protein
MSPQPFALTDVRQAPSGWWLEMTTPPATLSAPKQVQGSLSIELLREALALAVRHTIENDPPEARKAWLTEHHVWALYPALYRDLARALIDLDPSLQVPNQKDLIRQLAQSHLIARPRAVAVRETGSTSFSHLNLAVEIAPEHVWGDGEQRPPLWYETFADGPALKQVADLMGLPPIPEDQPRLALGSLLPKPQSQPDQWAGSVNPRVVLAIYWQAAELAPEEETRSIF
>CP031225.1|AXH57989.1|4934848_4935253_-|hypothetical-protein
MKPREVQSYDALAEEIWKSAQALLGFNFVAQRQWYEQTFCLAALGDSLAVARNWDLSGLEAIEYALILRHSWFPDQIRQMTPRDKWLSLHEELAGLEMAYGAKQAWRDREATELDANDSPEDVWRVYLRGYPVP
>CP031225.1|AXH57988.1|4933123_4934470_+|replicative-DNA-helicase
MDISHMSPPHSVEAEQAVLGGLMLDNESWDLIADRIKADDFFRAEHRLIFQSIAALAESNRPFDVVTVSDSIAAIDAAGGLAYLSELAKNTPSVANIKAYADTVSNRAHLRRLISHGYACTREASDPQADAAVVQDVIEQQLFALGQGRHTSDFVDVNQMLLQVVDKIDLRFNAGESVVGVPTGLSDLDELTGGLQPADLIILAARPSMGKTSLALNFVDAALQKDDHSTVQIYSLEMPAEAIIYRLLSILGHLNLEKLIRGQLEDEDWSRLSLAVAKVNSYRDRLVIDDQADLTPSAIRARARRGARRFGKPALIMIDYLQMMKCPGTENRANEISEISRSLKALAKEFDCPVVALSQLNRELERRQNKRPINADLRDSGALEQDADLILFVYRDEVYNADTEHKGIAELILGKHRNGSLGTVRTAFIPQHTRFENLSASTWQGARA
>CP031225.1|AXH57997.1|4943275_4944055_+|TIGR03761-family-integrating-conjugative-element-protein
MADNFQLNLGSLRSSVNLTLHTHHASRLWFGRQRTEGKPGMIGLSGFANILNRIKRGCEQDDPYSDWFLLLIEEKIDTAEQEMKDIDNRLDEVMAALPAMLSIGENLSVQPVTLPLYLSTPLAFKAVYLLTAYDELVRRILLASHVGLIDNNAKGQWLDEGAAILRRLFGLSQRYKFSGASRGDFAAKNARAEQAREMYAPFGEIPQDILEGVRRSKFAPALATASNSPADVDDHEDSFDEAMTLGQSDHEQPGSESEE
>CP031225.1|AXH57998.1|4944051_4944615_+|DUF3158-family-protein
MIGVKQQTASGKKLQQGAFQSLQQDAFSTLQHAPFLKGLLKPFKGKGGMLQLTELCRSLEEDLNALAEDQVLAQANRHPYTLLPVRMVRQRTSAGTVFLRWQEMGTRQMGVNVWSSLLADPRTPESLLQDLHAMEQQRVALNMQISLIHSIGRQAAECAEKMAQADAVYAERLQQINQSRVANDSQE
>CP031225.1|AXH57999.1|4944620_4945454_+|phage-regulatory-protein
MAESIVTSSNANATSEVSIELVKGQPMTTSVDIASHFGKLHKNVIKAIKALECTDSFHKLNFEPIQIDVDLGMGRTRKDPAFRITRDGFTFLCMGFTGKEAARWKEAYINAFNQMELALKAQPVEVDNKAVLAFALKTLELMRGQSQGRPPRPNSEQVVQTYLDIQSLDQATAEQIKLALIFVQGQIIGEGSAAVNLPNVAGSSIAKDLLYGLLRSAHDAELMFNALYDKGVEALASDAFKNHMTGKLADTSRQARELLGYVASHAARTPYATKFTH
>CP031225.1|AXH58000.1|4945465_4945927_+|single-stranded-DNA-binding-protein
MGTSIDWEGNIGSAPEFKEFANGNKDPRRLLRLNVYFDNSIPKSDGTGFEDRGGFWANVEFWHKDAEHYANVYQKGMRVLIQGRAVMDTWTKDGEDFSALKVQASRVGILPARIEAVQIAQSHPQQAARTQQPQRAQNNNDDAPPDFDDDIPV
>CP031225.1|AXH58001.1|4946256_4946544_+|hypothetical-protein
MTNEIVKTETLPIIVELQYEVALQAPDVRAALFDCEGAQARRDSIGRKLCSGSTAVTVRDLERWEKALSDAKKVLMQIAPILERHPICASVVAHS
>CP031225.1|AXH58002.1|4946640_4946820_+|hypothetical-protein
MRDTPDRRRFNNPHHAVMRAGADAARSGIPLHACPYRHPAMRASWLQGFAQAQQQSFKF
>CP031225.1|AXH58003.1|4947257_4948826_+|hypothetical-protein
MKLVHQLITHGGAQALLTSFSKHARDLALHEAQLSIKPLMKLDFLAASEEGRNKRFYGPRNRFYLTCIGATLKKFCQSLDQELLHAVRSVQCPSAQLYNWLARGDRTRRLQALKAQPVLIPVLVIGHAMPWPKIADSLLLEQCPWKDLQEYCGSCDDDDCTRDGAGLVGHAADTGLPLNKVLAWLFSTPISAIRYLGQQRVYDTGSALSRLNAEGLEAGWGDLIAGARLGNRRPSTKAQWRSFYTFRSAIPWSLLRALPDMNALLAGCPTDWADPAWSNITTKLVDLRELFSSLDRAGSRAALNTKNRLNAFVGGLSFRQISNLTDAFHSELEAIRARLEKAIPPEPSDAFTRWPGLMLNTDTITCCETGLHIVELRCADDLDLEHRALGHCIDTYDYHAFLGNCRLLSIRSGATPLASVELALRAHGHEHKTGQSGKWTPRHLHVVQIRGHHNETSDTLSPVMKAFERFIAEVRNGRIPVNLDWPNLVAKMDRYADKTSIYNIRFAEEIIGWAERLMDRGL
>CP031225.1|AXH58004.1|4948828_4950781_+|DEAD/DEAH-box-helicase
MAAPRLMNKRPVLLRKAIYDGYDFGLSLSYLEGANKLLLRRGGFFIRRSDHPLNQFWRVPKAKLLDDLDVLYRELAELADGKHIESWQAFRDRITSAQSDLHRDAFTWGMKFRLAPLAEGGVILSGDFHPGAVAIAKRMRGVYLSAGKAWRVQGTAELVRSNLILDLGLAEDQFEILDTLQELLADGSVSPVREVTSISLGGYSPESTKSEEEVSDSGIYLASVPSIKNTELTNAEIDKALESFSLMDHQPAGIRHLLQRTSALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLIINWQREILMVFPEAQIALQTFDAQAGWIIVNYERLGDFVRHAGCFAVMVIDEAHRLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAELHTLLRLSGHPIGQLPLNEFCERFAGSPEFRKTLRTEIADWMLRRRKDVLPNLKGKQRQTVPVVLSQAERDEYNQIMRSDTHRFARLGALRQLLERVKVLIVADLMAELDVDDKVILFCEYQESVVTLREYCLKMGIGCVTLVGSDSPKKRQKAIDAFQQDQDCRVFIGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQLRMVVVKIPLAEDTIDQQLWQMLMDKRALASDLIDPEAEESSKKALAEIL
>CP031225.1|AXH58005.1|4951102_4951786_-|hypothetical-protein
MSPDIARQAALSFPRMGTYLSVNSTNPSPLSAGIALYAWNAQAAAAFMYPLHFCEVLVRNAVAEVLTATYGPQWPWNNGFFLSLPNPSSPSAFKPRTAVLAACRKAEDLAGADTPSTDKAIAEMSFAFWQSMFTARYDHGLWANHLKTVFPNAPASMPNHEIRSKIHKSLESIRKLRNRIAHHEPIFARHLAQDYSNILRLVEYRCKHTSKWMDDTQSVRQVLQARP
>CP031225.1|AXH58006.1|4952329_4952899_+|hypothetical-protein
MIKQLSTLSILALFAGCTSVADKPAGPAFDTSQNPELLSPDLYSNGAKTRQEPTVRYGRYALVNTAPEAEQRDLMAQIIDVSIPPNMHPSVQDAMQYVISRSGYALCPPTTDHVNILFTRPLPSAQYKLGPMSLRNTLQVLAGPAWQVKVNEVTRDVCFVLRPGYQLPDTPKPTAPVQTDPPSNTEKTR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP031225_3	3.17\|4943118\|18\|CP031225\|CRT	4943118-4943135	18	CP031225.1	2264827-2264844	0	1.0
CP031225_3	3.17\|4943118\|18\|CP031225\|CRT	4943118-4943135	18	CP031225.1	2265115-2265132	0	1.0
CP031225_3	3.17\|4943118\|18\|CP031225\|CRT	4943118-4943135	18	CP031225.1	2265583-2265600	0	1.0
CP031225_3	3.17\|4943118\|18\|CP031225\|CRT	4943118-4943135	18	CP031225.1	2265871-2265888	0	1.0
CP031225_3	3.17\|4943118\|18\|CP031225\|CRT	4943118-4943135	18	CP031225.1	2265331-2265348	1	0.944
CP031225_3	3.17\|4943118\|18\|CP031225\|CRT	4943118-4943135	18	CP031225.1	2265655-2265672	1	0.944
CP031225_3	3.3\|4942614\|18\|CP031225\|CRT	4942614-4942631	18	CP031226.1	200871-200888	2	0.889

1. spacer 3.17|4943118|18|CP031225|CRT matches to position: 2264827-2264844, mismatch: 0, identity: 1.0

ccggccatcgatctgggt	CRISPR spacer
ccggccatcgatctgggt	Protospacer
******************

2. spacer 3.17|4943118|18|CP031225|CRT matches to position: 2265115-2265132, mismatch: 0, identity: 1.0

ccggccatcgatctgggt	CRISPR spacer
ccggccatcgatctgggt	Protospacer
******************

3. spacer 3.17|4943118|18|CP031225|CRT matches to position: 2265583-2265600, mismatch: 0, identity: 1.0

ccggccatcgatctgggt	CRISPR spacer
ccggccatcgatctgggt	Protospacer
******************

4. spacer 3.17|4943118|18|CP031225|CRT matches to position: 2265871-2265888, mismatch: 0, identity: 1.0

ccggccatcgatctgggt	CRISPR spacer
ccggccatcgatctgggt	Protospacer
******************

5. spacer 3.17|4943118|18|CP031225|CRT matches to position: 2265331-2265348, mismatch: 1, identity: 0.944

ccggccatcgatctgggt	CRISPR spacer
ccggccaccgatctgggt	Protospacer
*******.**********

6. spacer 3.17|4943118|18|CP031225|CRT matches to position: 2265655-2265672, mismatch: 1, identity: 0.944

ccggccatcgatctgggt	CRISPR spacer
ccggccaccgatctgggt	Protospacer
*******.**********

7. spacer 3.3|4942614|18|CP031225|CRT matches to position: 200871-200888, mismatch: 2, identity: 0.889

ccggacaccgatctggct	CRISPR spacer
ccggaaacagatctggct	Protospacer
***** ** *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031225_1	1.1\|185059\|32\|CP031225\|CRISPRCasFinder	185059-185090	32	NC_017536	Oligotropha carboxidovorans OM4 plasmid pHCG3B, complete sequence	81080-81111	9	0.719
CP031225_1	1.1\|185059\|32\|CP031225\|CRISPRCasFinder	185059-185090	32	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	203166-203197	9	0.719
CP031225_1	1.1\|185059\|32\|CP031225\|CRISPRCasFinder	185059-185090	32	NC_015689	Oligotropha carboxidovorans OM5 plasmid pHCG3, complete sequence	81082-81113	9	0.719
CP031225_1	1.1\|185059\|32\|CP031225\|CRISPRCasFinder	185059-185090	32	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	129100-129131	9	0.719
CP031225_1	1.1\|185059\|32\|CP031225\|CRISPRCasFinder	185059-185090	32	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	164167-164198	10	0.688
CP031225_1	1.1\|185059\|32\|CP031225\|CRISPRCasFinder	185059-185090	32	NZ_CP016289	Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence	419013-419044	10	0.688
CP031225_1	1.1\|185059\|32\|CP031225\|CRISPRCasFinder	185059-185090	32	NZ_CP016290	Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence	194177-194208	10	0.688
CP031225_1	1.1\|185059\|32\|CP031225\|CRISPRCasFinder	185059-185090	32	NZ_CP016292	Rhizobium leguminosarum strain Vaf10 plasmid unnamed4, complete sequence	173398-173429	10	0.688
CP031225_1	1.1\|185059\|32\|CP031225\|CRISPRCasFinder	185059-185090	32	NZ_CP026528	Sinorhizobium meliloti strain AK21 plasmid pSmeAK21a, complete sequence	124725-124756	10	0.688
CP031225_1	1.1\|185059\|32\|CP031225\|CRISPRCasFinder	185059-185090	32	NZ_CP050090	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b4, complete sequence	70837-70868	10	0.688

1. spacer 1.1|185059|32|CP031225|CRISPRCasFinder matches to NC_017536 (Oligotropha carboxidovorans OM4 plasmid pHCG3B, complete sequence) position: , mismatch: 9, identity: 0.719

tgcgtccgatcttgaacaggcggcggggagaa	CRISPR spacer
ggattccgttctcgaacaggcggcgggcggcc	Protospacer
 *  **** ***.************** .*

2. spacer 1.1|185059|32|CP031225|CRISPRCasFinder matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 9, identity: 0.719

tgcgtccgatcttgaacaggcggcggggagaa	CRISPR spacer
cgatgccgatctggaaaaggcggcgggggcca	Protospacer
.*   ******* *** ***********.  *

3. spacer 1.1|185059|32|CP031225|CRISPRCasFinder matches to NC_015689 (Oligotropha carboxidovorans OM5 plasmid pHCG3, complete sequence) position: , mismatch: 9, identity: 0.719

tgcgtccgatcttgaacaggcggcggggagaa	CRISPR spacer
ggattccgttctcgaacaggcggcgggcggcc	Protospacer
 *  **** ***.************** .*

4. spacer 1.1|185059|32|CP031225|CRISPRCasFinder matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 9, identity: 0.719

tgcgtccgatcttgaacaggcggcggggagaa	CRISPR spacer
cgacgccgatctggaaaaggcggcgggggcca	Protospacer
.*   ******* *** ***********.  *

5. spacer 1.1|185059|32|CP031225|CRISPRCasFinder matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tgcgtccgatcttgaacaggcggcggggagaa	CRISPR spacer
ggcgtccgatctcgaacacgcggctttatgtg	Protospacer
 ***********.***** *****   . * .

6. spacer 1.1|185059|32|CP031225|CRISPRCasFinder matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

tgcgtccgatcttgaacaggcggcggggagaa	CRISPR spacer
ggcgtccgatctcgaacacgcggctttatgtg	Protospacer
 ***********.***** *****   . * .

7. spacer 1.1|185059|32|CP031225|CRISPRCasFinder matches to NZ_CP016290 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

tgcgtccgatcttgaacaggcggcggggagaa	CRISPR spacer
ggcgtccgatctcgaacacgcggctttatgtg	Protospacer
 ***********.***** *****   . * .

8. spacer 1.1|185059|32|CP031225|CRISPRCasFinder matches to NZ_CP016292 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.688

tgcgtccgatcttgaacaggcggcggggagaa	CRISPR spacer
ggcgtccgatctcgaacacgcggctttatgtg	Protospacer
 ***********.***** *****   . * .

9. spacer 1.1|185059|32|CP031225|CRISPRCasFinder matches to NZ_CP026528 (Sinorhizobium meliloti strain AK21 plasmid pSmeAK21a, complete sequence) position: , mismatch: 10, identity: 0.688

tgcgtccgatcttgaacaggcggcggggagaa	CRISPR spacer
ggcgtccgatctcgaacacgcggctttatgtg	Protospacer
 ***********.***** *****   . * .

10. spacer 1.1|185059|32|CP031225|CRISPRCasFinder matches to NZ_CP050090 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b4, complete sequence) position: , mismatch: 10, identity: 0.688

tgcgtccgatcttgaacaggcggcggggagaa	CRISPR spacer
ggcgtccgatctcgaacacgcggctttatgtg	Protospacer
 ***********.***** *****   . * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

23132 : 49082

Ralstonia_phage(50.0%)

transposase,integrase

attL 22974:23018|attR 47422:47466

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
22974:23018	attL	NA	NA	NA	NA
AXH58915.1\|23132_24206_+\|integrase	site-specific integrase	A0A1S6L1B6	Ralstonia_phage	3.9e-61	40.6
AXH53931.1\|24276_24513_-	hypothetical protein	NA	NA	NA	NA
AXH53932.1\|24572_24773_-	hypothetical protein	NA	NA	NA	NA
AXH53933.1\|24799_26011_+	nucleoside 2-deoxyribosyltransferase	NA	NA	NA	NA
AXH53934.1\|26007_26613_+	7-cyano-7-deazaguanine synthase	NA	NA	NA	NA
AXH53935.1\|26527_27271_+	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA
AXH53936.1\|27205_28039_-	8-oxoguanine DNA glycosylase	NA	NA	NA	NA
AXH53937.1\|28038_28716_-	DNA adenine methylase	A0A0M4S5U3	Salmonella_phage	9.8e-42	42.9
AXH53938.1\|29036_29339_+	hypothetical protein	NA	NA	NA	NA
AXH53939.1\|29385_30174_+	hypothetical protein	NA	NA	NA	NA
AXH58916.1\|31065_32043_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58917.1\|32830_33103_+	hypothetical protein	NA	NA	NA	NA
AXH53940.1\|33189_33381_-	hypothetical protein	NA	NA	NA	NA
AXH53941.1\|34376_34751_+	hypothetical protein	NA	NA	NA	NA
AXH53942.1\|34885_35863_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH53943.1\|36097_36382_+	hypothetical protein	NA	NA	NA	NA
AXH58918.1\|36627_37605_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH53944.1\|38024_40529_+	hypothetical protein	NA	NA	NA	NA
AXH53945.1\|40736_41399_-	hypothetical protein	NA	NA	NA	NA
AXH53946.1\|41991_42318_+	hypothetical protein	NA	NA	NA	NA
AXH53947.1\|42314_44438_+	hypothetical protein	NA	NA	NA	NA
AXH58919.1\|44564_45542_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH53948.1\|45735_46239_+	hypothetical protein	NA	NA	NA	NA
AXH58920.1\|48104_49082_+\|transposase	IS5 family transposase	NA	NA	NA	NA
47422:47466	attR	NA	NA	NA	NA

DBSCAN-SWA_2

270449 : 328008

Bacillus_virus(15.38%)

holin,protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH58937.1\|270449_271427_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH54135.1\|272164_273178_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.3e-47	36.7
AXH54136.1\|273459_274758_-	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
AXH54137.1\|274843_275035_-	protein GbcA	NA	NA	NA	NA
AXH54138.1\|275067_276168_+	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
AXH54139.1\|276448_276715_-	hypothetical protein	NA	NA	NA	NA
AXH54140.1\|276838_277069_-	DUF3077 domain-containing protein	NA	NA	NA	NA
AXH54141.1\|277448_278285_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
AXH54142.1\|278566_279214_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
AXH54143.1\|279361_282055_-	EAL domain-containing protein	G3MA91	Bacillus_virus	7.4e-16	31.3
AXH54144.1\|282305_283718_-	MFS transporter	NA	NA	NA	NA
AXH54145.1\|283727_285053_-	TldD/PmbA family protein	NA	NA	NA	NA
AXH54146.1\|285052_286495_-	TldD/PmbA family protein	NA	NA	NA	NA
AXH58938.1\|286621_287662_-	low specificity L-threonine aldolase	NA	NA	NA	NA
AXH54147.1\|287761_288508_+	conjugal transfer protein TraX	NA	NA	NA	NA
AXH54148.1\|288616_289813_-	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA
AXH54149.1\|289894_290434_-	type 1 glutamine amidotransferase	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	3.5e-18	34.9
AXH54150.1\|290618_291485_+	HDOD domain-containing protein	NA	NA	NA	NA
AXH54151.1\|291530_292343_+	formamidopyrimidine-DNA glycosylase	A0A127AWE5	Bacillus_phage	1.8e-18	28.5
AXH54152.1\|292441_292780_+	multidrug transporter	NA	NA	NA	NA
AXH54153.1\|292788_293040_-	ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.2e-21	61.4
AXH54154.1\|293138_293618_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	5.7e-28	43.0
AXH54155.1\|293932_294595_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AXH54156.1\|294649_295507_+	sulfurtransferase	NA	NA	NA	NA
AXH58939.1\|295523_296549_-	hydrolase	NA	NA	NA	NA
AXH54157.1\|297049_297640_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
AXH54158.1\|297639_299133_-	insulinase family protein	NA	NA	NA	NA
AXH54159.1\|299129_300479_-	insulinase family protein	G3MBJ8	Bacillus_virus	5.0e-21	25.3
AXH58940.1\|300604_301582_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH54160.1\|301948_303457_+	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
AXH54161.1\|303453_304125_+	cell division ATP-binding protein FtsE	W6JKT0	Anomala_cuprea_entomopoxvirus	3.0e-14	25.8
AXH54162.1\|304121_305156_+	cell division protein FtsX	NA	NA	NA	NA
AXH54163.1\|305273_306128_+	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	3.6e-41	38.5
AXH58941.1\|306230_306941_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
AXH54164.1\|307021_307402_+	DUF423 domain-containing protein	NA	NA	NA	NA
AXH54165.1\|307514_307715_+	sulfur carrier protein ThiS	NA	NA	NA	NA
AXH54166.1\|307767_308562_+	thiazole synthase	NA	NA	NA	NA
AXH54167.1\|308572_309307_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
AXH54168.1\|309359_310418_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
AXH54169.1\|310608_311121_-	dihydrofolate reductase	A0A142IIC1	Enterobacteria_phage	5.5e-29	47.0
AXH54170.1\|311230_312610_+	DUF2868 domain-containing protein	NA	NA	NA	NA
AXH54171.1\|312602_313991_+	DUF3482 domain-containing protein	A0A0R6PFW5	Moraxella_phage	4.3e-52	36.3
AXH54172.1\|314299_314893_+	transcriptional regulator	NA	NA	NA	NA
AXH54173.1\|314997_316470_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
AXH54174.1\|316481_316583_+	hypothetical protein	NA	NA	NA	NA
AXH54175.1\|316610_318317_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	3.2e-49	29.0
AXH54176.1\|318508_319027_+	RNA polymerase sigma factor	NA	NA	NA	NA
AXH54177.1\|319023_320007_+	FecR family protein	NA	NA	NA	NA
AXH54178.1\|320128_321262_+	PepSY domain-containing protein	NA	NA	NA	NA
AXH54179.1\|321258_321441_+	hypothetical protein	NA	NA	NA	NA
AXH54180.1\|321510_322140_+	glutathione S-transferase family protein	NA	NA	NA	NA
AXH54181.1\|322375_322879_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
AXH54182.1\|323072_323972_+	acyltransferase	NA	NA	NA	NA
AXH54183.1\|323951_324515_-	DUF2780 domain-containing protein	NA	NA	NA	NA
AXH58942.1\|324745_325726_+	RHS repeat-associated core domain-containing protein	B6SD27	Bacteriophage	1.1e-28	40.2
AXH58943.1\|327030_328008_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

404477 : 486598

Pseudomonas_phage(45.95%)

plate,tail,tRNA,transposase,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH58949.1\|404477_405455_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH54246.1\|405494_406058_-	DNA cytosine methyltransferase	R4TMW4	Halovirus	2.6e-11	34.6
AXH54247.1\|406210_406519_-	hypothetical protein	NA	NA	NA	NA
AXH54248.1\|406636_408301_+	hypothetical protein	A0A2P0VNJ1	Tetraselmis_virus	1.0e-07	31.8
AXH54249.1\|408527_409784_-	hypothetical protein	NA	NA	NA	NA
AXH54250.1\|409825_410035_+	hypothetical protein	NA	NA	NA	NA
AXH54251.1\|411047_413537_-	bifunctional diguanylate cyclase/phosphodiesterase	A0A127AWB9	Bacillus_phage	2.0e-15	33.7
AXH54252.1\|413802_415653_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	2.0e-36	34.7
AXH54253.1\|415720_417676_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.1e-72	38.0
AXH54254.1\|418184_418400_-	30S ribosomal protein S21	NA	NA	NA	NA
AXH54255.1\|418598_419624_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.7e-104	55.8
AXH54256.1\|419659_420238_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
AXH54257.1\|420303_420657_+	dihydroneopterin aldolase	NA	NA	NA	NA
AXH54258.1\|420647_421172_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
AXH54259.1\|421272_422502_-\|tRNA	multifunctional tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/2'phosphatase	A0A0F6YPT7	Sinorhizobium_phage	3.9e-81	46.8
AXH54260.1\|422598_424161_-	SpoVR family protein	NA	NA	NA	NA
AXH54261.1\|424157_425429_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	9.9e-11	41.2
AXH58950.1\|425550_427473_-	PrkA family serine protein kinase	NA	NA	NA	NA
AXH54262.1\|427757_428078_-	thiosulfate sulfurtransferase	NA	NA	NA	NA
AXH54263.1\|428074_428971_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A291L9W7	Bordetella_phage	1.4e-06	43.8
AXH54264.1\|428970_429351_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
AXH54265.1\|429464_430271_-	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA
AXH54266.1\|430267_431257_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
AXH58951.1\|431253_432540_-	molecular chaperone SurA	NA	NA	NA	NA
AXH54267.1\|432556_435337_-	LPS-assembly protein LptD	NA	NA	NA	NA
AXH54268.1\|435466_436492_+	aminoglycoside phosphotransferase	NA	NA	NA	NA
AXH54269.1\|436556_437228_+	nucleotidyltransferase family protein	NA	NA	NA	NA
AXH54270.1\|437228_437996_+	molecular chaperone DjlA	NA	NA	NA	NA
AXH54271.1\|438029_439016_-	DUF3530 family protein	NA	NA	NA	NA
AXH54272.1\|441185_441815_+	DNA-binding response regulator	NA	NA	NA	NA
AXH54273.1\|441855_441969_-	DUF1534 domain-containing protein	NA	NA	NA	NA
AXH54274.1\|442130_443255_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	2.3e-27	31.4
AXH54275.1\|443337_444372_+	extracellular solute-binding protein	NA	NA	NA	NA
AXH54276.1\|444449_445697_+	ABC transporter permease	NA	NA	NA	NA
AXH54277.1\|445708_446530_+	ABC transporter permease	NA	NA	NA	NA
AXH54278.1\|446656_447331_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
AXH54279.1\|447327_448146_+	phosphoglycolate phosphatase	NA	NA	NA	NA
AXH54280.1\|448215_449697_+	anthranilate synthase component I	NA	NA	NA	NA
AXH58952.1\|450052_451975_-	autotransporter domain-containing esterase	NA	NA	NA	NA
AXH54281.1\|452080_452347_-	transcriptional regulator	A0A2H4J8B4	uncultured_Caudovirales_phage	2.1e-16	51.2
AXH54282.1\|452444_452693_-	DUF1654 domain-containing protein	NA	NA	NA	NA
AXH54283.1\|452847_453537_-	helix-turn-helix domain-containing protein	Q8HAG7	Salmonella_phage	5.3e-51	47.4
AXH54284.1\|453648_454092_+	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	6.0e-24	45.8
AXH54285.1\|454364_454559_+	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	2.7e-13	92.1
AXH54286.1\|454561_455734_+	glycoside hydrolase	NA	NA	NA	NA
AXH54287.1\|455856_456246_+	chemotaxis protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
AXH54288.1\|456226_456565_+	hypothetical protein	A0A059VJW1	Pseudomonas_phage	9.0e-20	59.2
AXH54289.1\|456610_457201_+	hypothetical protein	B5TK65	Pseudomonas_phage	6.3e-53	52.6
AXH54290.1\|457197_457386_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	5.3e-14	61.0
AXH54291.1\|457404_458901_+\|tail	phage tail protein	B5TK67	Pseudomonas_phage	2.9e-235	80.7
AXH54292.1\|458961_459309_+\|tail	phage tail protein	B5TK68	Pseudomonas_phage	8.6e-42	70.4
AXH54293.1\|459305_459602_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	4.3e-34	77.4
AXH54294.1\|459526_459733_+	hypothetical protein	NA	NA	NA	NA
AXH54295.1\|459732_461877_+\|tail	phage tail tape measure protein	U5P420	Shigella_phage	2.1e-77	39.3
AXH54296.1\|461873_463298_+	hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	8.3e-107	43.9
AXH54297.1\|463301_464429_+\|plate	baseplate protein	B5TK72	Pseudomonas_phage	7.2e-114	60.8
AXH54298.1\|464425_464938_+\|plate	phage baseplate assembly protein V	B5TK73	Pseudomonas_phage	5.6e-66	75.6
AXH54299.1\|464934_465333_+	hypothetical protein	B5TK74	Pseudomonas_phage	3.1e-43	65.2
AXH54300.1\|465322_466363_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	1.6e-131	69.8
AXH54301.1\|466350_466950_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	7.5e-86	72.4
AXH58953.1\|467098_468421_+\|tail	phage tail protein	B5TK79	Pseudomonas_phage	3.0e-71	49.3
AXH54302.1\|468428_468995_+\|tail	phage tail protein	B5TK80	Pseudomonas_phage	2.7e-45	46.9
AXH54303.1\|469300_470302_+\|tail	phage tail protein	NA	NA	NA	NA
AXH54304.1\|470399_470945_+	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	1.1e-67	71.1
AXH58954.1\|470956_471451_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	5.0e-27	47.8
AXH54305.1\|471515_471701_+	hypothetical protein	NA	NA	NA	NA
AXH54306.1\|471860_472460_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.5e-73	64.7
AXH54307.1\|472481_473531_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	6.9e-111	57.7
AXH54308.1\|473527_474364_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.3e-69	56.2
AXH54309.1\|474393_475089_+	lipoate--protein ligase family protein	NA	NA	NA	NA
AXH54310.1\|475100_475745_-	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
AXH54311.1\|475954_476377_+	OsmC family protein	NA	NA	NA	NA
AXH54312.1\|476619_477414_+	adenosylmethionine decarboxylase	NA	NA	NA	NA
AXH54313.1\|477490_478138_-	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA
AXH54314.1\|478260_478599_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA
AXH54315.1\|478702_479479_-	SDR family oxidoreductase	NA	NA	NA	NA
AXH54316.1\|479542_480451_-	DUF805 domain-containing protein	NA	NA	NA	NA
AXH54317.1\|480559_480988_-	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
AXH54318.1\|481121_482156_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
AXH54319.1\|482255_482606_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	7.4e-25	50.5
AXH54320.1\|482668_483763_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
AXH54321.1\|483766_485185_-	peptidase M23	A8ATH6	Listeria_phage	4.2e-18	44.7
AXH54322.1\|485181_485283_-	hypothetical protein	NA	NA	NA	NA
AXH54323.1\|485386_486598_+\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_4

1003697 : 1047731

uncultured_virus(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH58980.1\|1003697_1004675_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58981.1\|1004910_1005888_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH54773.1\|1006321_1006654_-	hypothetical protein	NA	NA	NA	NA
AXH54774.1\|1006682_1008233_-	AmpG family muropeptide MFS transporter	NA	NA	NA	NA
AXH54775.1\|1008287_1008644_-	MGMT family protein	NA	NA	NA	NA
AXH54776.1\|1008808_1009816_+	DUF481 domain-containing protein	NA	NA	NA	NA
AXH54777.1\|1009869_1010628_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AXH54778.1\|1010906_1011401_+	membrane protein FxsA	NA	NA	NA	NA
AXH54779.1\|1011655_1011949_+	co-chaperone GroES	A0A221S322	uncultured_virus	1.1e-13	38.9
AXH58982.1\|1011998_1013642_+	molecular chaperone GroEL	A0A2I7SAK5	Vibrio_phage	2.5e-176	64.2
AXH54780.1\|1013722_1014463_-	phosphatase PAP2 family protein	NA	NA	NA	NA
AXH54781.1\|1014640_1015324_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	5.1e-30	34.5
AXH54782.1\|1015313_1016603_+	sensor histidine kinase	B5LWA6	Feldmannia_species_virus	6.7e-07	29.4
AXH54783.1\|1016804_1017485_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AXH54784.1\|1017489_1018212_+	InaA protein	NA	NA	NA	NA
AXH54785.1\|1018208_1018436_+	hypothetical protein	NA	NA	NA	NA
AXH54786.1\|1018460_1019567_-	DUF1513 domain-containing protein	NA	NA	NA	NA
AXH54787.1\|1019583_1020648_-	imelysin	NA	NA	NA	NA
AXH54788.1\|1020726_1022154_-	thiol oxidoreductase	NA	NA	NA	NA
AXH54789.1\|1022360_1022990_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
AXH54790.1\|1023115_1024474_-	peptidase	NA	NA	NA	NA
AXH54791.1\|1024643_1026695_-	GGDEF domain-containing protein	NA	NA	NA	NA
AXH54792.1\|1027083_1027665_-	superoxide dismutase [Fe]	NA	NA	NA	NA
AXH54793.1\|1027857_1028460_-	amino acid transporter	NA	NA	NA	NA
AXH54794.1\|1028554_1029454_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA
AXH54795.1\|1029528_1030521_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
AXH54796.1\|1030605_1031457_+	ATPase	NA	NA	NA	NA
AXH54797.1\|1031623_1032367_+	hypothetical protein	NA	NA	NA	NA
AXH54798.1\|1033510_1034677_-	MFS transporter	NA	NA	NA	NA
AXH54799.1\|1034705_1035020_-	transcriptional regulator	NA	NA	NA	NA
AXH54800.1\|1035184_1035784_+	ACP phosphodiesterase	NA	NA	NA	NA
AXH54801.1\|1035741_1036578_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
AXH54802.1\|1036577_1037333_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXH54803.1\|1037646_1038753_+	serine hydrolase	NA	NA	NA	NA
AXH54804.1\|1038749_1039088_+	amidase	NA	NA	NA	NA
AXH54805.1\|1039169_1039751_+	YceI family protein	NA	NA	NA	NA
AXH54806.1\|1039752_1040910_+	phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein	NA	NA	NA	NA
AXH54807.1\|1040951_1041185_-	DUF3077 domain-containing protein	NA	NA	NA	NA
AXH54808.1\|1041753_1042071_-	hypothetical protein	NA	NA	NA	NA
AXH58983.1\|1042317_1043295_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58984.1\|1044359_1045337_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH54809.1\|1045543_1046647_+\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
AXH58985.1\|1046753_1047731_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1104911 : 1187472

Pseudomonas_phage(48.89%)

terminase,head,portal,protease,holin,tRNA,transposase,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH58989.1\|1104911_1105889_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH54853.1\|1106403_1107624_+	SAM-dependent methyltransferase	NA	NA	NA	NA
AXH54854.1\|1107774_1108923_+	L-threonine dehydrogenase	NA	NA	NA	NA
AXH54855.1\|1108947_1109394_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXH54856.1\|1109517_1110774_+	pectate lyase	NA	NA	NA	NA
AXH54857.1\|1110914_1111496_-	hypothetical protein	NA	NA	NA	NA
AXH54858.1\|1111607_1112048_-	DedA family protein	NA	NA	NA	NA
AXH54859.1\|1112057_1112936_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
AXH54860.1\|1112944_1113238_-	metal resistance protein	NA	NA	NA	NA
AXH54861.1\|1113889_1114123_-	hypothetical protein	A0A2H4J5U9	uncultured_Caudovirales_phage	1.5e-18	73.1
AXH54862.1\|1114224_1114467_-	hypothetical protein	NA	NA	NA	NA
AXH58990.1\|1114456_1114957_-	HNH endonuclease	NA	NA	NA	NA
AXH54863.1\|1115012_1115213_-	hypothetical protein	NA	NA	NA	NA
AXH54864.1\|1115209_1115590_-	hypothetical protein	NA	NA	NA	NA
AXH54865.1\|1115579_1115774_-	carbon storage regulator	A0A0U1UNS3	Pseudomonas_phage	5.0e-07	55.1
AXH54866.1\|1115851_1116232_-	DNA-binding response regulator	A0A1W6JTA9	Pseudomonas_phage	4.2e-18	47.2
AXH54867.1\|1116318_1117071_-	helix-turn-helix domain-containing protein	A0A1W6JTC8	Pseudomonas_phage	4.4e-51	63.4
AXH54868.1\|1117179_1117467_+	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
AXH54869.1\|1117603_1117939_+	hypothetical protein	NA	NA	NA	NA
AXH54870.1\|1117935_1118307_+	hypothetical protein	NA	NA	NA	NA
AXH54871.1\|1118303_1118549_+	hypothetical protein	NA	NA	NA	NA
AXH54872.1\|1118545_1119268_+	hypothetical protein	A0A1W6JTB2	Pseudomonas_phage	1.6e-37	44.3
AXH54873.1\|1119264_1119855_+	hypothetical protein	NA	NA	NA	NA
AXH54874.1\|1119851_1120679_+	helix-turn-helix domain-containing protein	A0A1W6JTD5	Pseudomonas_phage	1.2e-46	58.8
AXH54875.1\|1120675_1121464_+	AAA family ATPase	A0A0A0YRV1	Pseudomonas_phage	4.3e-65	49.6
AXH54876.1\|1121460_1122849_+	replicative DNA helicase	A0A2H4J8N1	uncultured_Caudovirales_phage	1.3e-144	58.6
AXH54877.1\|1123323_1123608_+	hypothetical protein	NA	NA	NA	NA
AXH54878.1\|1123604_1123979_+	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	8.4e-35	56.7
AXH54879.1\|1124452_1125373_+	hypothetical protein	NA	NA	NA	NA
AXH54880.1\|1125409_1125733_+\|holin	phage holin, lambda family	A0A2D1GNJ3	Pseudomonas_phage	8.6e-12	38.0
AXH54881.1\|1125729_1126149_+	hypothetical protein	NA	NA	NA	NA
AXH58991.1\|1126276_1126504_+	hypothetical protein	NA	NA	NA	NA
AXH54882.1\|1126788_1127127_+	HNH endonuclease	C4ML58	Xanthomonas_virus	6.6e-23	50.0
AXH54883.1\|1127265_1127772_+\|terminase	terminase small subunit	Q3HQS6	Burkholderia_phage	3.5e-20	46.3
AXH54884.1\|1127771_1129457_+\|terminase	terminase large subunit	A0A2H4JDK9	uncultured_Caudovirales_phage	6.3e-255	83.6
AXH54885.1\|1129459_1130674_+\|portal	phage portal protein	A0A2H4JFN7	uncultured_Caudovirales_phage	7.4e-173	74.0
AXH54886.1\|1130660_1131302_+\|head,protease	HK97 family phage prohead protease	A0A2H4JA51	uncultured_Caudovirales_phage	6.2e-86	76.1
AXH54887.1\|1131298_1132504_+\|capsid	phage major capsid protein	A0A2H4J8D1	uncultured_Caudovirales_phage	2.2e-132	61.7
AXH54888.1\|1132563_1132902_+	hypothetical protein	A0A2H4JG33	uncultured_Caudovirales_phage	4.6e-08	50.8
AXH54889.1\|1132901_1133201_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J8C5	uncultured_Caudovirales_phage	2.1e-36	75.8
AXH54890.1\|1133200_1133521_+\|head,tail	head-tail adaptor protein	A0A2D1GNG1	Pseudomonas_phage	2.6e-29	64.6
AXH54891.1\|1133698_1134199_+	HK97 gp10 family phage protein	A0A2D1GNN2	Pseudomonas_phage	5.3e-61	70.9
AXH54892.1\|1134191_1134578_+	DUF3168 domain-containing protein	A0A2D1GNT4	Pseudomonas_phage	2.0e-55	84.4
AXH54893.1\|1134632_1135130_+	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	1.5e-71	79.4
AXH54894.1\|1135141_1135477_+	hypothetical protein	A0A2D1GNT5	Pseudomonas_phage	1.2e-27	59.4
AXH54895.1\|1135509_1135719_+	hypothetical protein	A0A2D1GNK2	Pseudomonas_phage	9.8e-09	63.3
AXH54896.1\|1139237_1139576_+\|tail	phage tail protein	I6PBN7	Cronobacter_phage	1.8e-15	39.7
AXH54897.1\|1139572_1140322_+\|tail	phage minor tail protein L	A0A2H4J4Q5	uncultured_Caudovirales_phage	2.2e-119	79.1
AXH54898.1\|1140324_1141089_+\|tail	phage tail protein	A0A2H4J1J7	uncultured_Caudovirales_phage	3.5e-128	81.2
AXH54899.1\|1141150_1141498_+	hypothetical protein	A0A1B0VMC6	Pseudomonas_phage	2.9e-29	66.7
AXH58992.1\|1141552_1142140_+\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	1.1e-70	70.5
AXH54900.1\|1142197_1145899_+	DUF1983 domain-containing protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	62.7
AXH54901.1\|1145895_1146264_+	hypothetical protein	A0A059VJS9	Pseudomonas_phage	1.8e-61	96.7
AXH54902.1\|1146260_1146923_+	hypothetical protein	A0A059VF40	Pseudomonas_phage	3.3e-119	94.1
AXH54903.1\|1146952_1148491_+\|tail	tail fiber domain-containing protein	A0A059VJZ6	Pseudomonas_phage	5.3e-43	61.0
AXH54904.1\|1148550_1149084_+	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	9.0e-91	92.7
AXH54905.1\|1149080_1149596_+	DUF2514 domain-containing protein	A0A059VF51	Pseudomonas_phage	5.2e-59	80.1
AXH54906.1\|1149608_1149821_+	hypothetical protein	A0A059VK06	Pseudomonas_phage	1.3e-11	55.7
AXH54907.1\|1149817_1151062_+	SGNH/GDSL hydrolase family protein	A0A059VA35	Pseudomonas_phage	2.0e-218	92.5
AXH54908.1\|1151076_1151421_-	hypothetical protein	NA	NA	NA	NA
AXH54909.1\|1153113_1154928_-	allophanate hydrolase	NA	NA	NA	NA
AXH54910.1\|1154963_1158656_-	urea carboxylase	NA	NA	NA	NA
AXH54911.1\|1158765_1159383_-	urea carboxylase-associated family protein	NA	NA	NA	NA
AXH54912.1\|1159394_1160120_-	urea carboxylase-associated family protein	NA	NA	NA	NA
AXH54913.1\|1160116_1160899_-	ABC transporter ATP-binding protein	A0A140XAK6	Dickeya_phage	3.0e-18	50.5
AXH54914.1\|1160895_1161711_-	ABC transporter permease	G3M9Y4	Bacillus_virus	4.3e-07	24.1
AXH54915.1\|1161738_1162806_-	lipid kinase	NA	NA	NA	NA
AXH54916.1\|1162824_1163220_+	hypothetical protein	NA	NA	NA	NA
AXH54917.1\|1163368_1163860_+	hypothetical protein	NA	NA	NA	NA
AXH54918.1\|1164052_1164745_+	uracil-DNA glycosylase	S4VYQ4	Pandoravirus	6.1e-55	46.5
AXH54919.1\|1164766_1165801_-	AbrB family transcriptional regulator	NA	NA	NA	NA
AXH54920.1\|1165793_1167308_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
AXH54921.1\|1167309_1167768_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
AXH54922.1\|1167830_1168811_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
AXH54923.1\|1168809_1169040_+	hypothetical protein	NA	NA	NA	NA
AXH58993.1\|1169291_1169963_+	DNA-binding response regulator	NA	NA	NA	NA
AXH54924.1\|1169955_1171338_+	sensor histidine kinase	W8CYF6	Bacillus_phage	5.0e-16	25.9
AXH54925.1\|1171340_1172162_-	HDOD domain-containing protein	A0A1C3NFB0	Phage_NCTB	3.9e-24	31.4
AXH54926.1\|1172276_1173224_-	folate-binding protein	NA	NA	NA	NA
AXH54927.1\|1173371_1173626_+	succinate dehydrogenase assembly factor 2 family protein	NA	NA	NA	NA
AXH54928.1\|1173609_1174074_+	hypothetical protein	NA	NA	NA	NA
AXH54929.1\|1174042_1175659_-	L-aspartate oxidase	NA	NA	NA	NA
AXH54930.1\|1176156_1176738_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
AXH54931.1\|1176771_1177362_+	RNA polymerase subunit sigma	NA	NA	NA	NA
AXH54932.1\|1177370_1178330_+	RNA polymerase subunit sigma	NA	NA	NA	NA
AXH54933.1\|1178613_1180053_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	7.7e-28	31.2
AXH54934.1\|1180224_1182021_+	elongation factor 4	A0A2K9L2P9	Tupanvirus	5.7e-20	40.0
AXH54935.1\|1182030_1182885_+	signal peptidase I	NA	NA	NA	NA
AXH54936.1\|1183001_1183379_+	DUF4845 domain-containing protein	NA	NA	NA	NA
AXH54937.1\|1183375_1184065_+	ribonuclease 3	A0A1C9C5A7	Heterosigma_akashiwo_virus	2.1e-23	38.3
AXH54938.1\|1184057_1184960_+	GTPase Era	NA	NA	NA	NA
AXH54939.1\|1185019_1185703_+	DNA repair protein RecO	NA	NA	NA	NA
AXH58994.1\|1185762_1186503_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
AXH54940.1\|1186512_1187472_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA

DBSCAN-SWA_6

1216869 : 1258580

Planktothrix_phage(50.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH54963.1\|1216869_1217973_-\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
AXH59001.1\|1218179_1219157_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH54964.1\|1219432_1220146_-	hypothetical protein	NA	NA	NA	NA
AXH59002.1\|1220427_1221405_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH54965.1\|1221563_1222496_+	hypothetical protein	NA	NA	NA	NA
AXH54966.1\|1222561_1223692_-	OpgC domain-containing protein	NA	NA	NA	NA
AXH54967.1\|1223986_1224268_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
AXH54968.1\|1224420_1225512_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
AXH54969.1\|1225508_1225919_+	NUDIX domain-containing protein	NA	NA	NA	NA
AXH54970.1\|1225957_1226875_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXH59003.1\|1226918_1227716_+	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase	NA	NA	NA	NA
AXH59004.1\|1227839_1228832_+	alpha/beta hydrolase	NA	NA	NA	NA
AXH54971.1\|1228913_1229561_+	DsbA family oxidoreductase	NA	NA	NA	NA
AXH54972.1\|1229692_1231021_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
AXH54973.1\|1231036_1232962_-	sensor histidine kinase	NA	NA	NA	NA
AXH54974.1\|1233017_1233752_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.4e-32	38.2
AXH54975.1\|1233748_1234414_-	ABC transporter permease subunit	NA	NA	NA	NA
AXH54976.1\|1234413_1235160_-	amino acid ABC transporter permease	NA	NA	NA	NA
AXH59005.1\|1235290_1236205_-	glutamate/aspartate ABC transporter substrate-binding protein	NA	NA	NA	NA
AXH54977.1\|1236553_1238092_-	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
AXH59006.1\|1238274_1238529_+	DUF1534 domain-containing protein	NA	NA	NA	NA
AXH54978.1\|1238532_1239288_-	DeoR/GlpR family transcriptional regulator	A0A077SK06	Escherichia_phage	1.0e-23	30.7
AXH54979.1\|1239387_1240893_-	glycerol kinase	NA	NA	NA	NA
AXH54980.1\|1240953_1241811_-	aquaporin	NA	NA	NA	NA
AXH54981.1\|1242151_1242622_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
AXH54982.1\|1242630_1243704_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-24	31.9
AXH54983.1\|1243700_1244621_-	ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	7.1e-19	27.5
AXH54984.1\|1245071_1245365_+	hypothetical protein	NA	NA	NA	NA
AXH54985.1\|1245497_1247606_+	molybdopterin oxidoreductase family protein	NA	NA	NA	NA
AXH54986.1\|1247694_1248021_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
AXH54987.1\|1248149_1248620_-	bacterioferritin	NA	NA	NA	NA
AXH54988.1\|1248820_1249039_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
AXH54989.1\|1249237_1249915_-	ribonuclease T	NA	NA	NA	NA
AXH54990.1\|1249911_1250955_-	dihydroorotase	NA	NA	NA	NA
AXH54991.1\|1251104_1252010_+	OmpA family protein	NA	NA	NA	NA
AXH54992.1\|1252130_1253348_+	argininosuccinate synthase	NA	NA	NA	NA
AXH59007.1\|1253782_1254193_-	hypothetical protein	NA	NA	NA	NA
AXH59008.1\|1254583_1255561_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH54993.1\|1255738_1256320_+	hypothetical protein	NA	NA	NA	NA
AXH54994.1\|1256334_1257438_+\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
AXH59009.1\|1257602_1258580_-\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

1573710 : 1616981

Antheraea_pernyi_nuclear_polyhedrosis_virus(12.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH59033.1\|1573710_1574688_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH59034.1\|1574923_1575901_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH55239.1\|1576133_1576319_+	hypothetical protein	NA	NA	NA	NA
AXH55240.1\|1576845_1577595_-	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
AXH55241.1\|1577709_1578276_+	cysteine hydrolase	NA	NA	NA	NA
AXH55242.1\|1578288_1581033_-	helicase	A8C6A2	Antheraea_pernyi_nuclear_polyhedrosis_virus	6.2e-42	29.4
AXH55243.1\|1581108_1581633_-	hypothetical protein	NA	NA	NA	NA
AXH55244.1\|1581644_1585097_-	transcription-repair coupling factor	NA	NA	NA	NA
AXH55245.1\|1585287_1586751_+	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
AXH55246.1\|1586898_1588161_+	MFS transporter	NA	NA	NA	NA
AXH55247.1\|1588245_1589538_-	MFS transporter	Q6JIH2	Burkholderia_virus	3.3e-70	38.7
AXH55248.1\|1589916_1590948_+	FAD:protein FMN transferase	NA	NA	NA	NA
AXH55249.1\|1591114_1592509_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA
AXH55250.1\|1592551_1593274_-	glycerophosphodiester phosphodiesterase	A0A292GJA3	Xanthomonas_phage	2.1e-05	38.6
AXH55251.1\|1593346_1593934_-	PilZ domain-containing protein	NA	NA	NA	NA
AXH55252.1\|1594036_1595287_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
AXH55253.1\|1595279_1595978_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	2.3e-38	41.6
AXH55254.1\|1596055_1597300_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
AXH55255.1\|1597429_1598260_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A2I7SAX1	Vibrio_phage	2.4e-37	37.2
AXH55256.1\|1598515_1598785_-	DUF4404 family protein	NA	NA	NA	NA
AXH55257.1\|1598888_1599497_-	HAD family phosphatase	NA	NA	NA	NA
AXH55258.1\|1599695_1600397_+	VacJ family lipoprotein	NA	NA	NA	NA
AXH55259.1\|1600485_1600785_-	PilZ domain-containing protein	NA	NA	NA	NA
AXH55260.1\|1601052_1602237_+	response regulator	NA	NA	NA	NA
AXH55261.1\|1602233_1602719_+	anti-sigma factor antagonist	NA	NA	NA	NA
AXH55262.1\|1602804_1603731_-	transaldolase	A0A1D7SEQ4	Cyanophage	6.5e-12	34.4
AXH55263.1\|1603939_1606309_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
AXH55264.1\|1606549_1607794_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
AXH55265.1\|1607928_1608372_+	RulA protein	A0A1L5C2A3	Pseudoalteromonas_phage	2.9e-10	33.7
AXH55266.1\|1608450_1608690_+	hypothetical protein	NA	NA	NA	NA
AXH59035.1\|1608818_1609952_+	sensor histidine kinase	A0A1B0VMK3	Pseudomonas_phage	6.5e-123	60.3
AXH55267.1\|1609929_1610286_-	hypothetical protein	NA	NA	NA	NA
AXH59036.1\|1611163_1612141_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH55268.1\|1612423_1612963_+	hypothetical protein	NA	NA	NA	NA
AXH59037.1\|1613030_1614008_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH55269.1\|1614221_1614566_+	hypothetical protein	NA	NA	NA	NA
AXH59038.1\|1614794_1615772_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH55270.1\|1615877_1616981_-\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

1870167 : 1926710

Pseudomonas_phage(41.3%)

terminase,head,integrase,portal,protease,transposase,capsid,tail

attL 1866046:1866061|attR 1903396:1903411

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1866046:1866061	attL	NA	NA	NA	NA
AXH55437.1\|1870167_1872558_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	4.1e-18	32.5
AXH55438.1\|1872610_1874077_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
AXH55439.1\|1874407_1874752_+	DUF469 domain-containing protein	NA	NA	NA	NA
AXH55440.1\|1874834_1875401_-	response regulator	NA	NA	NA	NA
AXH55441.1\|1875494_1876598_-\|integrase	integrase	A0A0U4JIT5	Pseudomonas_phage	7.0e-130	61.3
AXH55442.1\|1876578_1876821_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	3.0e-09	45.6
AXH55443.1\|1876857_1877592_-	serine/threonine protein phosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	4.8e-119	77.5
AXH59048.1\|1877639_1878374_-	site-specific DNA-methyltransferase	Q6UJ22	Burkholderia_virus	7.1e-70	56.2
AXH55444.1\|1878478_1879096_-	hypothetical protein	NA	NA	NA	NA
AXH55445.1\|1879281_1879710_-	hypothetical protein	V9VCU4	Achromobacter_phage	1.2e-05	40.5
AXH55446.1\|1879880_1880369_-	HNH endonuclease	A0A1J0GWA4	Alteromonas_phage	8.7e-32	44.8
AXH59049.1\|1880414_1881482_-	reverse transcriptase	A0A0N7AE80	Bacillus_phage	4.7e-46	34.5
AXH55447.1\|1881788_1882145_-	four helix bundle protein	NA	NA	NA	NA
AXH55448.1\|1882196_1882814_-	DUF1566 domain-containing protein	NA	NA	NA	NA
AXH55449.1\|1882890_1883502_-	DUF1566 domain-containing protein	NA	NA	NA	NA
AXH55450.1\|1883607_1883832_+	hypothetical protein	NA	NA	NA	NA
AXH55451.1\|1883839_1884151_-	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	1.8e-22	55.3
AXH55452.1\|1884232_1884592_-	hypothetical protein	NA	NA	NA	NA
AXH55453.1\|1884588_1886220_-	Heme peroxidase	A0A2H4J6P1	uncultured_Caudovirales_phage	1.2e-183	63.3
AXH55454.1\|1886216_1886972_-	hypothetical protein	A0A2H4IZU8	uncultured_Caudovirales_phage	1.3e-122	88.8
AXH55455.1\|1887495_1888086_-	hypothetical protein	A0A127KN62	Pseudomonas_phage	8.9e-15	30.4
AXH55456.1\|1888082_1888277_-	hypothetical protein	NA	NA	NA	NA
AXH55457.1\|1888273_1888675_-	hypothetical protein	A0A2H4J9E7	uncultured_Caudovirales_phage	8.2e-12	37.8
AXH55458.1\|1888695_1888938_-	DUF551 domain-containing protein	NA	NA	NA	NA
AXH55459.1\|1889639_1889819_-	hypothetical protein	NA	NA	NA	NA
AXH55460.1\|1889875_1890100_-	hypothetical protein	NA	NA	NA	NA
AXH55461.1\|1890145_1890619_-	hypothetical protein	A0A173GC65	Salmonella_phage	3.7e-27	41.1
AXH55462.1\|1891125_1891389_+	DUF1652 domain-containing protein	NA	NA	NA	NA
AXH55463.1\|1891644_1892718_-	ImmA/IrrE family metallo-endopeptidase	B6SBZ6	Clostridium_virus	3.3e-23	27.1
AXH55464.1\|1892704_1893370_-	hypothetical protein	NA	NA	NA	NA
AXH55465.1\|1893551_1893767_-	hypothetical protein	NA	NA	NA	NA
AXH55466.1\|1893763_1894075_-	hypothetical protein	NA	NA	NA	NA
AXH55467.1\|1894110_1894383_-	hypothetical protein	NA	NA	NA	NA
AXH59050.1\|1894395_1894788_-	peptidase S24	K7PH71	Enterobacterial_phage	3.7e-33	53.4
AXH55468.1\|1895186_1895411_+	hypothetical protein	NA	NA	NA	NA
AXH55469.1\|1895439_1895640_+	hypothetical protein	A0A2H4J115	uncultured_Caudovirales_phage	3.1e-12	57.8
AXH55470.1\|1895660_1895864_+	hypothetical protein	NA	NA	NA	NA
AXH55471.1\|1895945_1896176_-	hypothetical protein	NA	NA	NA	NA
AXH55472.1\|1896314_1897112_+	DNA-binding protein	A0A2D1GNK4	Pseudomonas_phage	1.1e-39	45.0
AXH55473.1\|1897108_1897429_+	hypothetical protein	A0A2H4J5Q4	uncultured_Caudovirales_phage	3.2e-11	44.8
AXH55474.1\|1897425_1898223_+	DUF1376 domain-containing protein	A0A059VF77	Pseudomonas_phage	4.1e-63	93.3
AXH55475.1\|1898212_1899031_+	AAA family ATPase	A0A059VK34	Pseudomonas_phage	1.0e-146	98.2
AXH55476.1\|1900000_1900417_+	NinB family protein	A0A2H4JA22	uncultured_Caudovirales_phage	3.9e-65	84.1
AXH55477.1\|1900416_1900749_+	hypothetical protein	NA	NA	NA	NA
AXH55478.1\|1900748_1901330_+	recombination protein NinG	A0A059VA66	Pseudomonas_phage	1.6e-80	74.0
AXH55479.1\|1901326_1901872_+	hypothetical protein	A0A0H5AWB8	Pseudomonas_phage	1.2e-58	62.5
AXH55480.1\|1902127_1902499_+	chemotaxis protein	A0A059VK40	Pseudomonas_phage	4.4e-44	77.2
AXH55481.1\|1902498_1902858_+	hypothetical protein	A0A059VJW1	Pseudomonas_phage	2.1e-27	72.8
AXH59051.1\|1902890_1903103_+	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	1.6e-14	60.9
AXH55482.1\|1903163_1903343_+	hypothetical protein	NA	NA	NA	NA
AXH55483.1\|1903333_1903729_+	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	2.8e-57	75.2
1903396:1903411	attR	NA	NA	NA	NA
AXH55484.1\|1903896_1904382_+\|terminase	phage terminase small subunit P27 family	A0A2D1GNP3	Pseudomonas_phage	1.2e-78	90.7
AXH55485.1\|1904382_1906116_+\|terminase	terminase large subunit	A0A2D1GNU5	Pseudomonas_phage	0.0e+00	92.8
AXH55486.1\|1906124_1906436_-	hypothetical protein	NA	NA	NA	NA
AXH55487.1\|1906434_1907580_+\|portal	phage portal protein	A0A1V0E8B9	Vibrio_phage	7.1e-125	57.8
AXH55488.1\|1907583_1908426_+\|protease	Clp protease ClpP	A0A1V0E8B8	Vibrio_phage	3.5e-89	62.4
AXH55489.1\|1908437_1909823_+\|capsid	phage major capsid protein	H2BDB0	Pseudomonas_virus	2.7e-131	63.6
AXH55490.1\|1909873_1910290_+	hypothetical protein	NA	NA	NA	NA
AXH55491.1\|1910293_1910770_+\|head,tail	phage gp6-like head-tail connector protein	G3ENA1	Psychrobacter_phage	1.2e-14	35.7
AXH55492.1\|1910769_1911108_+\|head,tail	head-tail adaptor protein	A0A1J0GUY4	Halomonas_phage	2.4e-28	59.1
AXH55493.1\|1911100_1911586_+	hypothetical protein	A0A0U3TGT7	Pseudomonas_phage	2.3e-56	67.3
AXH55494.1\|1911585_1911954_+	DUF3168 domain-containing protein	A0A1J0GUW9	Halomonas_phage	2.6e-41	66.9
AXH55495.1\|1912018_1912516_+\|tail	phage tail protein	H2BDC0	Pseudomonas_virus	4.7e-57	66.5
AXH55496.1\|1912525_1912963_+\|tail	phage tail protein	K7PJU9	Enterobacteria_phage	7.2e-38	65.9
AXH55497.1\|1913225_1914032_+	hypothetical protein	A0A2H4J8D6	uncultured_Caudovirales_phage	4.7e-59	47.5
AXH55498.1\|1914088_1916662_+\|tail	phage tail tape measure protein	A0A2H4PI09	Pseudomonas_phage	6.6e-179	50.6
AXH55499.1\|1916661_1917006_+\|tail	phage tail protein	A0A2D1GNJ1	Pseudomonas_phage	6.7e-31	52.6
AXH55500.1\|1917140_1917371_-	hypothetical protein	NA	NA	NA	NA
AXH55501.1\|1917452_1917707_-	protein L	NA	NA	NA	NA
AXH59052.1\|1917864_1918563_+\|tail	phage minor tail protein L	A0A2D1GNF3	Pseudomonas_phage	4.3e-109	81.8
AXH55502.1\|1918565_1919348_+\|tail	phage tail protein	A0A2D1GNP8	Pseudomonas_phage	1.1e-118	72.7
AXH55503.1\|1919344_1919932_+\|tail	tail assembly protein	A0A2D1GNM2	Pseudomonas_phage	1.5e-75	74.6
AXH55504.1\|1919986_1923715_+	DUF1983 domain-containing protein	A0A2D1GNE3	Pseudomonas_phage	0.0e+00	59.5
AXH55505.1\|1923716_1924019_+	hypothetical protein	NA	NA	NA	NA
AXH55506.1\|1924018_1924885_+	hypothetical protein	NA	NA	NA	NA
AXH59053.1\|1925732_1926710_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1983526 : 1990023

Geobacillus_virus(16.67%)

integrase

attL 1982053:1982067|attR 1998680:1998694

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1982053:1982067	attL	NA	NA	NA	NA
AXH55566.1\|1983526_1983829_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	1.8e-11	38.9
AXH55567.1\|1983809_1984166_+	MerR family transcriptional regulator	NA	NA	NA	NA
AXH55568.1\|1984413_1985598_-\|integrase	site-specific integrase	A0A059VF45	Pseudomonas_phage	3.8e-222	96.2
AXH59056.1\|1985921_1986656_-	serine/threonine protein phosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	6.3e-119	76.6
AXH55569.1\|1986704_1986893_-	hypothetical protein	NA	NA	NA	NA
AXH55570.1\|1986889_1987282_-	ASCH domain-containing protein	A0A291AUQ6	Sinorhizobium_phage	1.6e-28	46.9
AXH55571.1\|1987708_1988251_-	hypothetical protein	NA	NA	NA	NA
AXH55572.1\|1988421_1988910_-	HNH endonuclease	A0A1J0GWA4	Alteromonas_phage	8.7e-32	44.8
AXH59057.1\|1988955_1990023_-	reverse transcriptase	A0A0N7AE80	Bacillus_phage	4.7e-46	34.5
1998680:1998694	attR	NA	NA	NA	NA

DBSCAN-SWA_10

2024153 : 2094109

Bacillus_phage(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH55604.1\|2024153_2026160_-\|protease	collagenase-like protease	Q6DW11	Phage_TP	7.2e-24	29.0
AXH55605.1\|2026266_2027058_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.9e-13	32.0
AXH55606.1\|2027054_2028077_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	8.0e-11	22.8
AXH55607.1\|2028073_2029087_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXH55608.1\|2029435_2030152_-	FadR family transcriptional regulator	NA	NA	NA	NA
AXH55609.1\|2030260_2030995_+	FadR family transcriptional regulator	NA	NA	NA	NA
AXH55610.1\|2031099_2031822_-	porin	NA	NA	NA	NA
AXH55611.1\|2031957_2032722_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.0e-26	35.6
AXH59058.1\|2032732_2033572_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.1e-13	26.0
AXH55612.1\|2033620_2034526_-	ABC transporter permease	NA	NA	NA	NA
AXH55613.1\|2034525_2035563_-	ABC transporter permease	NA	NA	NA	NA
AXH55614.1\|2035603_2037226_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXH55615.1\|2037312_2038479_-	enolase	NA	NA	NA	NA
AXH55616.1\|2038985_2039681_+	histidine phosphatase family protein	NA	NA	NA	NA
AXH55617.1\|2039677_2040550_+	PAP2 family protein	NA	NA	NA	NA
AXH55618.1\|2040570_2041245_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.7e-25	31.8
AXH55619.1\|2041252_2042290_-	AraC family transcriptional regulator	NA	NA	NA	NA
AXH55620.1\|2042299_2043214_-	GGDEF domain-containing protein	NA	NA	NA	NA
AXH55621.1\|2043737_2046254_+	TonB-dependent receptor	NA	NA	NA	NA
AXH55622.1\|2046291_2048220_+	3-phytase	NA	NA	NA	NA
AXH55623.1\|2048275_2048986_+	protein TolQ	NA	NA	NA	NA
AXH55624.1\|2048995_2049442_+	protein TolR	NA	NA	NA	NA
AXH55625.1\|2049438_2050281_+	energy transducer TonB	NA	NA	NA	NA
AXH55626.1\|2050322_2052320_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-37	35.0
AXH55627.1\|2052807_2053221_-	AraC family transcriptional regulator	NA	NA	NA	NA
AXH55628.1\|2053638_2055057_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
AXH55629.1\|2055439_2056927_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.4e-213	77.6
AXH55630.1\|2058141_2058831_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.6e-26	34.8
AXH55631.1\|2058929_2060402_+	RND transporter	NA	NA	NA	NA
AXH55632.1\|2060421_2061273_+	MipA/OmpV family protein	NA	NA	NA	NA
AXH55633.1\|2061289_2062423_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AXH55634.1\|2062440_2065473_+	AcrB/AcrD/AcrF family protein	NA	NA	NA	NA
AXH55635.1\|2065546_2066788_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
AXH55636.1\|2067487_2069197_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
AXH55637.1\|2081272_2082376_+\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
AXH59059.1\|2082540_2083518_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH55638.1\|2083585_2083873_-	hypothetical protein	NA	NA	NA	NA
AXH59060.1\|2084310_2085288_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH59061.1\|2085802_2086780_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH55639.1\|2087396_2088053_-	hypothetical protein	NA	NA	NA	NA
AXH55640.1\|2088021_2093058_-	hypothetical protein	NA	NA	NA	NA
AXH59062.1\|2093131_2094109_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

2718796 : 2729265

uncultured_Caudovirales_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH56160.1\|2718796_2720077_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.3e-97	45.8
AXH56161.1\|2720077_2721472_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
AXH56162.1\|2721523_2722522_-	glutathione S-transferase family protein	NA	NA	NA	NA
AXH56163.1\|2722630_2723632_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.0e-163	83.2
AXH56164.1\|2723628_2723964_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	9.8e-43	76.6
AXH56165.1\|2723960_2724260_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.9e-30	62.6
AXH56166.1\|2724259_2724622_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.1e-35	62.8
AXH59110.1\|2724623_2725016_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	8.2e-57	82.3
AXH56167.1\|2725250_2726552_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.6e-61	36.1
AXH56168.1\|2726566_2727346_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXH56169.1\|2727331_2728240_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXH56170.1\|2728593_2729265_+	BAX inhibitor (BI)-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	8.7e-107	92.8

DBSCAN-SWA_12

2853993 : 2906789

Pseudomonas_phage(66.67%)

terminase,tail,head,integrase

attL 2853809:2853868|attR 2907566:2907631

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2853809:2853868	attL	NA	NA	NA	NA
AXH56261.1\|2853993_2854971_+\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	4.0e-113	65.8
AXH56262.1\|2854967_2855213_-	hypothetical protein	B5WZU8	Pseudomonas_phage	5.1e-25	70.1
AXH56263.1\|2855290_2856025_-	serine/threonine protein phosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	2.8e-119	77.0
AXH59122.1\|2856072_2856807_-	site-specific DNA-methyltransferase	Q6UJ22	Burkholderia_virus	7.1e-70	56.2
AXH56264.1\|2856911_2857529_-	hypothetical protein	NA	NA	NA	NA
AXH56265.1\|2857714_2858143_-	hypothetical protein	V9VCU4	Achromobacter_phage	1.2e-05	40.5
AXH56266.1\|2858139_2858403_-	hypothetical protein	NA	NA	NA	NA
AXH56267.1\|2858305_2859844_-	DNA cytosine methyltransferase	Q6V7R9	Burkholderia_virus	1.1e-109	46.5
AXH56268.1\|2859846_2860335_-	HNH endonuclease	A0A1J0GWA4	Alteromonas_phage	2.5e-31	44.7
AXH56269.1\|2860681_2861029_-	hypothetical protein	A0A059VA62	Pseudomonas_phage	1.2e-59	100.0
AXH59123.1\|2861116_2861305_-	hypothetical protein	NA	NA	NA	NA
AXH56270.1\|2861806_2862304_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	1.6e-44	70.1
AXH56271.1\|2862312_2862930_-	exonuclease	A0A1B0VMB3	Pseudomonas_phage	9.8e-89	78.6
AXH59124.1\|2862926_2863676_-	single-stranded DNA-binding protein	A0A125RNR3	Pseudomonas_phage	3.5e-80	64.2
AXH56272.1\|2863701_2864859_-	hypothetical protein	A0A059VK18	Pseudomonas_phage	3.8e-86	84.4
AXH56273.1\|2864915_2865107_-	hypothetical protein	NA	NA	NA	NA
AXH56274.1\|2865093_2865282_-	hypothetical protein	NA	NA	NA	NA
AXH56275.1\|2865278_2865473_-	hypothetical protein	NA	NA	NA	NA
AXH56276.1\|2865469_2865871_-	hypothetical protein	A0A2H4J9E7	uncultured_Caudovirales_phage	4.1e-11	36.4
AXH56277.1\|2865891_2866125_-	hypothetical protein	A0A2H4JA69	uncultured_Caudovirales_phage	1.1e-11	48.6
AXH56278.1\|2866124_2866328_-	hypothetical protein	NA	NA	NA	NA
AXH56279.1\|2866586_2866766_-	hypothetical protein	NA	NA	NA	NA
AXH56280.1\|2866822_2867047_-	hypothetical protein	NA	NA	NA	NA
AXH56281.1\|2867092_2867566_-	hypothetical protein	A0A173GC65	Salmonella_phage	3.7e-27	41.1
AXH56282.1\|2868072_2868336_+	DUF1652 domain-containing protein	NA	NA	NA	NA
AXH56283.1\|2868591_2869665_-	ImmA/IrrE family metallo-endopeptidase	B6SBZ6	Clostridium_virus	3.3e-23	27.1
AXH56284.1\|2869651_2870317_-	hypothetical protein	NA	NA	NA	NA
AXH56285.1\|2870498_2870714_-	hypothetical protein	NA	NA	NA	NA
AXH56286.1\|2870710_2871022_-	hypothetical protein	NA	NA	NA	NA
AXH56287.1\|2871057_2871330_-	hypothetical protein	NA	NA	NA	NA
AXH56288.1\|2871342_2872002_-	helix-turn-helix domain-containing protein	K7P850	Enterobacteria_phage	5.4e-37	41.6
AXH56289.1\|2872091_2872301_+	hypothetical protein	A0A1B0Z2M2	Pseudomonas_phage	1.6e-14	61.9
AXH56290.1\|2872332_2872539_+	hypothetical protein	NA	NA	NA	NA
AXH56291.1\|2872558_2872783_+	hypothetical protein	NA	NA	NA	NA
AXH56292.1\|2872860_2873595_+	phage antirepressor protein	A0A059VF66	Pseudomonas_phage	8.9e-89	70.2
AXH56293.1\|2874621_2875440_+	AAA family ATPase	A0A059VK34	Pseudomonas_phage	4.7e-147	98.5
AXH56294.1\|2876409_2876826_+	NinB family protein	A0A2H4JA22	uncultured_Caudovirales_phage	3.9e-65	84.1
AXH56295.1\|2876825_2877158_+	hypothetical protein	NA	NA	NA	NA
AXH56296.1\|2877157_2877739_+	recombination protein NinG	A0A059VA66	Pseudomonas_phage	1.6e-80	74.0
AXH56297.1\|2877735_2878281_+	hypothetical protein	A0A0H5AWB8	Pseudomonas_phage	1.2e-58	62.5
AXH56298.1\|2878536_2878908_+	chemotaxis protein	A0A059VK40	Pseudomonas_phage	4.4e-44	77.2
AXH56299.1\|2878907_2879246_+	hypothetical protein	A0A059VJW1	Pseudomonas_phage	9.0e-28	74.7
AXH56300.1\|2879291_2879510_+	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	1.5e-15	55.7
AXH56301.1\|2879803_2880427_+	hypothetical protein	A0A059VJU8	Pseudomonas_phage	2.8e-112	94.7
AXH56302.1\|2880459_2880921_+	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	1.1e-49	77.7
AXH56303.1\|2880907_2882209_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.5e-147	58.3
AXH56304.1\|2882217_2883657_+	DUF4055 domain-containing protein	A0A2H4J5M6	uncultured_Caudovirales_phage	4.2e-74	37.4
AXH56305.1\|2883646_2884696_+\|head	phage head morphogenesis protein	D2XJ68	Escherichia_phage	2.0e-41	32.0
AXH56306.1\|2884811_2885522_+	hypothetical protein	A0A2H4J0Y0	uncultured_Caudovirales_phage	2.1e-34	56.3
AXH56307.1\|2885534_2886503_+	hypothetical protein	R9TJ64	Synechococcus_phage	1.2e-114	66.4
AXH56308.1\|2886554_2887130_+	hypothetical protein	A0A1B0VMF7	Pseudomonas_phage	2.6e-11	38.5
AXH56309.1\|2887181_2887571_+	protein singed	A0A0S2SYB7	Pseudomonas_phage	1.0e-14	43.4
AXH56310.1\|2887574_2887934_+	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	2.1e-19	45.8
AXH56311.1\|2887933_2888314_+	HK97 gp10 family phage protein	A0A059VF88	Pseudomonas_phage	3.6e-33	56.2
AXH56312.1\|2888310_2888733_+	hypothetical protein	A0A059VK45	Pseudomonas_phage	1.7e-63	86.4
AXH56313.1\|2888729_2889599_+	hypothetical protein	NA	NA	NA	NA
AXH56314.1\|2889665_2890826_+	hypothetical protein	A0A059VG08	Pseudomonas_phage	3.2e-165	97.0
AXH56315.1\|2890905_2891379_+	hypothetical protein	A0A059VF34	Pseudomonas_phage	1.2e-73	89.2
AXH56316.1\|2891396_2891648_+	hypothetical protein	A0A059VJS3	Pseudomonas_phage	2.2e-31	78.3
AXH56317.1\|2891751_2891982_+	hypothetical protein	A0A059VJS3	Pseudomonas_phage	3.0e-11	81.4
AXH56318.1\|2892056_2892743_+	hypothetical protein	NA	NA	NA	NA
AXH56319.1\|2892809_2896844_+\|tail	phage tail tape measure protein	A0A059VJZ1	Pseudomonas_phage	0.0e+00	79.4
AXH56320.1\|2896861_2897446_+	hypothetical protein	A0A059VJR9	Pseudomonas_phage	3.3e-102	95.9
AXH56321.1\|2897445_2898048_+	hypothetical protein	A0A059VA31	Pseudomonas_phage	2.8e-112	99.5
AXH56322.1\|2898050_2898449_+	hypothetical protein	A0A059VK01	Pseudomonas_phage	2.7e-71	93.9
AXH56323.1\|2898448_2901625_+	DUF1983 domain-containing protein	A0A059VFW9	Pseudomonas_phage	0.0e+00	81.1
AXH56324.1\|2901621_2901990_+	hypothetical protein	A0A059VJS9	Pseudomonas_phage	1.8e-61	96.7
AXH56325.1\|2901986_2902649_+	hypothetical protein	A0A059VF40	Pseudomonas_phage	3.3e-119	94.1
AXH56326.1\|2902678_2904217_+\|tail	tail fiber domain-containing protein	A0A059VJZ6	Pseudomonas_phage	5.3e-43	61.0
AXH56327.1\|2904277_2904811_+	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	5.8e-90	93.2
AXH56328.1\|2904807_2905323_+	DUF2514 domain-containing protein	A0A059VF51	Pseudomonas_phage	5.2e-59	80.1
AXH56329.1\|2905335_2905548_+	hypothetical protein	A0A059VK06	Pseudomonas_phage	1.3e-11	55.7
AXH56330.1\|2905544_2906789_+	SGNH/GDSL hydrolase family protein	A0A059VA35	Pseudomonas_phage	2.5e-208	87.4
2907566:2907631	attR	NA	NA	NA	NA

DBSCAN-SWA_13

3483115 : 3536166

uncultured_Caudovirales_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH59168.1\|3483115_3484093_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH56793.1\|3484199_3485303_-\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
AXH59169.1\|3485509_3486487_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH56794.1\|3487217_3487589_+	hypothetical protein	NA	NA	NA	NA
AXH56795.1\|3487590_3487773_+	DUF1289 domain-containing protein	NA	NA	NA	NA
AXH56796.1\|3487879_3489133_+	MFS transporter	NA	NA	NA	NA
AXH56797.1\|3489139_3489880_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
AXH56798.1\|3490042_3491344_+	Mn2+/Fe2+ transporter	NA	NA	NA	NA
AXH56799.1\|3491569_3493681_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
AXH56800.1\|3493719_3494448_+	DUF4198 domain-containing protein	NA	NA	NA	NA
AXH56801.1\|3494720_3495587_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
AXH56802.1\|3495583_3496486_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	3.0e-30	34.5
AXH56803.1\|3496467_3497709_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
AXH56804.1\|3497722_3498028_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
AXH56805.1\|3498024_3500931_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
AXH56806.1\|3500934_3501507_+	sarcosine oxidase	NA	NA	NA	NA
AXH56807.1\|3501721_3503662_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	8.5e-22	45.5
AXH56808.1\|3503782_3504679_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXH56809.1\|3504788_3505664_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
AXH56810.1\|3505758_3506157_+	hypothetical protein	NA	NA	NA	NA
AXH59170.1\|3506244_3506370_-	hypothetical protein	NA	NA	NA	NA
AXH56811.1\|3506435_3507917_-	chemotaxis protein CheW	NA	NA	NA	NA
AXH59171.1\|3507913_3510046_-	PAS domain S-box protein	A0A2H4J162	uncultured_Caudovirales_phage	1.6e-13	38.5
AXH56812.1\|3511195_3512542_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
AXH56813.1\|3512538_3513498_+	dihydrofolate reductase	A0A1J0F959	Only_Syngen_Nebraska_virus	6.7e-12	26.5
AXH56814.1\|3513574_3514549_+	aliphatic sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
AXH59172.1\|3514609_3516145_-	amidase	NA	NA	NA	NA
AXH56815.1\|3516368_3517001_-	ANTAR domain-containing protein	NA	NA	NA	NA
AXH56816.1\|3516997_3518146_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AXH56817.1\|3518888_3520070_+	urea ABC transporter substrate-binding protein	NA	NA	NA	NA
AXH56818.1\|3520136_3521039_+	urea ABC transporter permease subunit UrtB	NA	NA	NA	NA
AXH56819.1\|3521040_3522183_+	urea ABC transporter permease subunit UrtC	NA	NA	NA	NA
AXH56820.1\|3522179_3522917_+	urea ABC transporter ATP-binding protein UrtD	A0A2H4PQG7	Staphylococcus_phage	5.7e-19	28.4
AXH56821.1\|3522919_3523609_+	urea ABC transporter ATP-binding subunit UrtE	G9BWD6	Planktothrix_phage	1.2e-18	29.8
AXH56822.1\|3523631_3524072_+	urease accessory protein UreE	NA	NA	NA	NA
AXH59173.1\|3524068_3524800_+	urease accessory protein UreF	NA	NA	NA	NA
AXH56823.1\|3524827_3525523_+	urease subunit beta	NA	NA	NA	NA
AXH56824.1\|3525526_3527239_+	urease subunit alpha	NA	NA	NA	NA
AXH56825.1\|3527265_3527928_+	urease accessory protein UreG	NA	NA	NA	NA
AXH56826.1\|3527924_3528782_+	urease accessory protein UreD	NA	NA	NA	NA
AXH56827.1\|3528850_3529942_-	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
AXH56828.1\|3530001_3530337_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AXH56829.1\|3530478_3532101_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	5.1e-20	29.8
AXH59174.1\|3532320_3533298_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH56830.1\|3533903_3534881_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH59175.1\|3535188_3536166_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_14

3541186 : 3600510

Streptococcus_phage(50.0%)

protease,integrase,transposase

attL 3540096:3540110|attR 3604134:3604148

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3540096:3540110	attL	NA	NA	NA	NA
AXH59176.1\|3541186_3542164_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH56831.1\|3542328_3543432_-\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
AXH59177.1\|3543580_3544558_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH59178.1\|3544995_3545973_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH56832.1\|3546126_3548148_+	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	1.0e-38	30.0
AXH56833.1\|3549220_3549754_+	regulator	NA	NA	NA	NA
AXH56834.1\|3549961_3550330_+	hypothetical protein	NA	NA	NA	NA
AXH56835.1\|3550949_3551366_+	DUF3577 domain-containing protein	NA	NA	NA	NA
AXH59179.1\|3551492_3552470_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH56836.1\|3552721_3552943_+	hypothetical protein	NA	NA	NA	NA
AXH56837.1\|3553044_3553407_+	hypothetical protein	NA	NA	NA	NA
AXH56838.1\|3553507_3554119_+	DUF3275 family protein	NA	NA	NA	NA
AXH56839.1\|3554244_3554844_+	hypothetical protein	NA	NA	NA	NA
AXH56840.1\|3554874_3556326_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AXH56841.1\|3556433_3558692_+	DEAD/DEAH box helicase	NA	NA	NA	NA
AXH56842.1\|3558786_3559149_+	hypothetical protein	NA	NA	NA	NA
AXH59180.1\|3559986_3560964_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH56843.1\|3561762_3562467_+	hypothetical protein	NA	NA	NA	NA
AXH56844.1\|3562475_3563222_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA
AXH56845.1\|3563760_3564267_+	integrating conjugative element protein	NA	NA	NA	NA
AXH56846.1\|3564278_3566438_+	conjugative coupling factor TraD, PFGI-1 class	NA	NA	NA	NA
AXH56847.1\|3566477_3567227_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA
AXH56848.1\|3567236_3568694_+	ATP-dependent helicase	A0A088C4M0	Shewanella_sp._phage	3.3e-42	30.7
AXH56849.1\|3568716_3569148_-	hypothetical protein	NA	NA	NA	NA
AXH56850.1\|3569317_3569650_+	DUF4177 domain-containing protein	NA	NA	NA	NA
AXH56851.1\|3569729_3570095_+	conjugal transfer protein	NA	NA	NA	NA
AXH56852.1\|3570091_3570331_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA
AXH56853.1\|3570350_3570719_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA
AXH56854.1\|3570734_3571127_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA
AXH56855.1\|3571123_3571792_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA
AXH56856.1\|3571788_3572712_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA
AXH56857.1\|3572701_3574198_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA
AXH56858.1\|3574175_3574631_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA
AXH59181.1\|3574840_3577588_+	conjugative transfer ATPase	NA	NA	NA	NA
AXH56859.1\|3577584_3577884_+	hypothetical protein	NA	NA	NA	NA
AXH56860.1\|3577880_3578579_+	protein-disulfide isomerase	NA	NA	NA	NA
AXH56861.1\|3578889_3579435_+	hypothetical protein	NA	NA	NA	NA
AXH56862.1\|3580486_3580624_+	stability/partitioning determinant	NA	NA	NA	NA
AXH56863.1\|3580656_3580875_+	hypothetical protein	NA	NA	NA	NA
AXH59182.1\|3580768_3581425_-\|protease	YopT-type cysteine protease domain-containing protein	NA	NA	NA	NA
AXH56864.1\|3581787_3582684_-	hypothetical protein	NA	NA	NA	NA
AXH56865.1\|3583367_3584471_-\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
AXH56866.1\|3584515_3584704_+	hypothetical protein	NA	NA	NA	NA
AXH56867.1\|3584902_3585457_-	hypothetical protein	NA	NA	NA	NA
AXH56868.1\|3585497_3586037_-	hypothetical protein	NA	NA	NA	NA
AXH56869.1\|3586054_3586243_-	hypothetical protein	NA	NA	NA	NA
AXH56870.1\|3586239_3586542_-	hypothetical protein	NA	NA	NA	NA
AXH56871.1\|3586606_3587017_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA
AXH56872.1\|3587013_3587952_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA
AXH56873.1\|3587972_3589340_+	integrating conjugative element protein	NA	NA	NA	NA
AXH56874.1\|3589342_3589717_+	hypothetical protein	NA	NA	NA	NA
AXH56875.1\|3589713_3591252_+	conjugal transfer protein TraG	NA	NA	NA	NA
AXH59183.1\|3591291_3591678_-	DUF3742 family protein	NA	NA	NA	NA
AXH56876.1\|3592272_3593466_-	MFS transporter	NA	NA	NA	NA
AXH56877.1\|3593486_3594089_-	DUF1349 domain-containing protein	NA	NA	NA	NA
AXH56878.1\|3594090_3594744_-	HAD family phosphatase	NA	NA	NA	NA
AXH56879.1\|3594743_3595418_-	riboflavin biosynthesis protein RibD	NA	NA	NA	NA
AXH59184.1\|3595479_3596439_-	alcohol dehydrogenase	NA	NA	NA	NA
AXH56880.1\|3597130_3599059_+	integrating conjugative element relaxase	NA	NA	NA	NA
AXH56881.1\|3599055_3600510_+\|integrase	site-specific integrase	NA	NA	NA	NA
3604134:3604148	attR	NA	NA	NA	NA

DBSCAN-SWA_15

3611432 : 3717563

106

Pseudomonas_phage(45.83%)

terminase,head,integrase,portal,protease,tail,tRNA,transposase,capsid,lysis

attL 3622132:3622148|attR 3718136:3718152

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH56894.1\|3611432_3613208_-\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	3.3e-12	27.0
AXH59186.1\|3613488_3613833_-	hypothetical protein	NA	NA	NA	NA
AXH56895.1\|3614182_3614656_-	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	3.9e-21	40.0
AXH59187.1\|3615075_3615351_-	hypothetical protein	NA	NA	NA	NA
AXH56896.1\|3615501_3615723_+	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	3.8e-11	47.6
AXH56897.1\|3615788_3615995_-	protein SlyX	NA	NA	NA	NA
AXH56898.1\|3615991_3616423_-	HIT domain-containing protein	NA	NA	NA	NA
AXH56899.1\|3616904_3617090_+	hypothetical protein	NA	NA	NA	NA
AXH56900.1\|3617286_3618633_+	outer membrane porin, OprD family	NA	NA	NA	NA
AXH56901.1\|3618804_3620520_+\|tRNA	proline--tRNA ligase	A0A2K9L0T2	Tupanvirus	9.9e-06	23.9
AXH56902.1\|3620590_3621547_+	hypothetical protein	NA	NA	NA	NA
AXH56903.1\|3621586_3622648_-	DNA polymerase IV	NA	NA	NA	NA
3622132:3622148	attL	NA	NA	NA	NA
AXH56904.1\|3623640_3626283_+	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
AXH56905.1\|3626282_3627617_+	virulence factor family protein	NA	NA	NA	NA
AXH56906.1\|3627714_3629610_-	potassium transporter Kup	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	5.2e-72	33.3
AXH59188.1\|3631119_3631419_-	hypothetical protein	NA	NA	NA	NA
AXH59189.1\|3631657_3631837_+	hypothetical protein	NA	NA	NA	NA
AXH56907.1\|3631820_3632216_+	hypothetical protein	NA	NA	NA	NA
AXH56908.1\|3632266_3633061_-	DNA adenine methylase	Q5ZQW7	Pseudomonas_phage	6.7e-98	66.3
AXH56909.1\|3633654_3634089_+	peptidase S24	A0A1W6JNS2	Morganella_phage	2.3e-15	36.9
AXH56910.1\|3634072_3634321_+	DNA-directed DNA polymerase	A0A218MNF2	uncultured_virus	2.6e-24	68.4
AXH56911.1\|3634381_3635392_+\|integrase	site-specific integrase	NA	NA	NA	NA
AXH56912.1\|3635415_3637557_+\|integrase	integrase	NA	NA	NA	NA
AXH56913.1\|3637722_3638811_-	type III secretion system YopJ family effector HopZ2	NA	NA	NA	NA
AXH59190.1\|3638895_3640011_+	DUF4113 domain-containing protein	I6RSM4	Salmonella_phage	9.7e-79	45.8
AXH59191.1\|3640908_3641886_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH56914.1\|3642092_3643196_+\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
AXH59192.1\|3643365_3644190_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
AXH56915.1\|3644204_3645176_-	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	9.2e-126	66.8
AXH56916.1\|3645148_3645859_-	hypothetical protein	A0A2I7RNK1	Vibrio_phage	2.6e-37	38.3
AXH56917.1\|3645855_3646386_-	DNA-binding protein	A0A0U4J942	Pseudomonas_phage	3.2e-48	57.3
AXH56918.1\|3646382_3647315_-	hypothetical protein	NA	NA	NA	NA
AXH56919.1\|3647304_3647775_-	hypothetical protein	NA	NA	NA	NA
AXH56920.1\|3647771_3649769_-\|tail	phage tail protein	A0A0U4K5K2	Pseudomonas_phage	1.0e-107	56.4
AXH56921.1\|3649777_3650302_-\|tail	phage tail protein	A0A0U4JVX3	Pseudomonas_phage	3.2e-72	73.0
AXH56922.1\|3650298_3651468_-	hypothetical protein	A0A0U4JJ14	Pseudomonas_phage	6.7e-155	69.4
AXH56923.1\|3651464_3651782_-	DUF2590 family protein	A0A0U4B0N5	Pseudomonas_phage	4.4e-37	78.4
AXH56924.1\|3651781_3653947_-\|tail	phage tail tape measure protein	A0A0U4IJ81	Pseudomonas_phage	1.2e-125	39.3
AXH56925.1\|3654116_3654407_-	hypothetical protein	A0A0U4B0P2	Pseudomonas_phage	4.1e-21	63.6
AXH56926.1\|3654440_3654920_-\|lysis	lysis protein	A0A0U4JXC2	Pseudomonas_phage	1.5e-20	45.6
AXH56927.1\|3654916_3655444_-	lysozyme	NA	NA	NA	NA
AXH56928.1\|3655440_3655647_-	hypothetical protein	NA	NA	NA	NA
AXH56929.1\|3655646_3655856_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
AXH56930.1\|3655855_3656308_-	DUF2597 family protein	A0A0U3TH58	Pseudomonas_phage	7.2e-57	72.8
AXH56931.1\|3656311_3657424_-	DUF2586 family protein	A0A0U4KLE6	Pseudomonas_phage	1.0e-136	66.6
AXH56932.1\|3657438_3658107_-	virion morphogenesis protein	A0A0U4ISN1	Pseudomonas_phage	1.7e-54	55.2
AXH56933.1\|3658096_3658540_-\|tail	phage tail protein	A0A0U4IBS7	Pseudomonas_phage	1.6e-48	63.7
AXH56934.1\|3658536_3658998_-\|head	head protein	A0A0U4J933	Pseudomonas_phage	5.5e-44	60.8
AXH56935.1\|3659101_3659824_-\|terminase	terminase	A0A0U4JEJ1	Pseudomonas_phage	5.5e-83	70.7
AXH56936.1\|3659820_3660843_-\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	4.5e-123	66.5
AXH59193.1\|3660844_3661768_-\|capsid	capsid scaffolding protein	A0A0U4JVV6	Pseudomonas_phage	3.4e-61	55.9
AXH56937.1\|3661929_3663984_+\|terminase	terminase	A0A0U4JIZ9	Pseudomonas_phage	1.9e-266	71.9
AXH59194.1\|3663910_3664765_+\|portal	phage portal protein	A0A0U4B0L9	Pseudomonas_phage	3.1e-101	76.9
AXH56938.1\|3664842_3665112_+	transcriptional regulator	U3PB63	Vibrio_phage	1.9e-09	41.8
AXH56939.1\|3665766_3666471_-	hypothetical protein	NA	NA	NA	NA
AXH56940.1\|3666662_3667286_-	hypothetical protein	NA	NA	NA	NA
AXH56941.1\|3667282_3667507_-	Cro/Cl family transcriptional regulator	A0A2H4J1L8	uncultured_Caudovirales_phage	3.1e-08	45.2
AXH56942.1\|3667654_3668374_+	helix-turn-helix domain-containing protein	A0A1W6JTC8	Pseudomonas_phage	5.0e-44	56.4
AXH56943.1\|3668440_3668758_-	hypothetical protein	NA	NA	NA	NA
AXH56944.1\|3668823_3669096_-	hypothetical protein	A8YQQ5	Burkholderia_virus	1.5e-09	46.2
AXH59195.1\|3669095_3669314_-	hypothetical protein	NA	NA	NA	NA
AXH56945.1\|3670411_3670987_-	hypothetical protein	NA	NA	NA	NA
AXH56946.1\|3671104_3671362_-	DUF1654 domain-containing protein	NA	NA	NA	NA
AXH56947.1\|3671425_3673045_-	recombinase family protein	Q3HQV4	Burkholderia_phage	1.2e-162	57.4
AXH59196.1\|3673079_3674411_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
AXH59197.1\|3674513_3674954_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXH56948.1\|3675046_3675757_+	RNA-binding protein	NA	NA	NA	NA
AXH56949.1\|3675837_3676299_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	4.2e-36	49.3
AXH59198.1\|3676312_3677005_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
AXH56950.1\|3677084_3677864_-	ferredoxin--NADP reductase	NA	NA	NA	NA
AXH56951.1\|3677987_3678914_+	LysR family transcriptional regulator	NA	NA	NA	NA
AXH56952.1\|3678921_3679287_-	diacylglycerol kinase	NA	NA	NA	NA
AXH56953.1\|3679370_3680018_-	DNA-binding response regulator	NA	NA	NA	NA
AXH56954.1\|3680263_3680974_-	DTW domain-containing protein	NA	NA	NA	NA
AXH56955.1\|3681253_3681670_+	hypothetical protein	NA	NA	NA	NA
AXH56956.1\|3681863_3682985_+	LOG family protein	NA	NA	NA	NA
AXH56957.1\|3682989_3683457_-	regulatory protein RecX	NA	NA	NA	NA
AXH56958.1\|3683462_3684527_-	DNA recombination/repair protein RecA	A0A0S2MVG1	Bacillus_phage	1.4e-111	62.4
AXH59199.1\|3684620_3685121_-	CinA family protein	B5TK85	Pseudomonas_phage	3.0e-56	71.1
AXH56959.1\|3685594_3688174_+	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	8.1e-28	24.0
AXH56960.1\|3688433_3688757_+	ferredoxin family protein	NA	NA	NA	NA
AXH56961.1\|3689273_3690281_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	8.6e-34	35.8
AXH56962.1\|3690384_3691251_-	LysM peptidoglycan-binding domain-containing protein	I3PV79	Clostridium_phage	5.5e-13	35.3
AXH56963.1\|3691459_3692137_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	8.0e-44	53.7
AXH56964.1\|3692136_3692886_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.6e-64	49.8
AXH56965.1\|3692873_3693932_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
AXH56966.1\|3693928_3694402_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AXH56967.1\|3694454_3695300_-	S-formylglutathione hydrolase	NA	NA	NA	NA
AXH56968.1\|3695375_3696488_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	4.0e-32	28.5
AXH56969.1\|3696592_3697489_+	LysR family transcriptional regulator	NA	NA	NA	NA
AXH56970.1\|3697489_3698200_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
AXH56971.1\|3698213_3698492_-	cell division protein FtsB	NA	NA	NA	NA
AXH56972.1\|3698682_3699969_-	enolase	A0A1X9I5Z8	Streptococcus_phage	1.6e-138	60.0
AXH56973.1\|3700108_3700954_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.2e-49	42.0
AXH56974.1\|3700968_3702600_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	8.2e-159	53.3
AXH56975.1\|3702863_3704201_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
AXH56976.1\|3704353_3705301_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
AXH56977.1\|3705429_3708951_-	DNA polymerase III subunit alpha	A0A1C9LWZ5	Streptomyces_phage	1.4e-195	37.4
AXH56978.1\|3709020_3709674_-	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	3.0e-27	40.5
AXH56979.1\|3709685_3710828_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
AXH56980.1\|3710830_3711607_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
AXH56981.1\|3711603_3712044_-	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
AXH56982.1\|3712153_3713209_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
AXH56983.1\|3713211_3713715_-	OmpH family outer membrane protein	NA	NA	NA	NA
AXH56984.1\|3713760_3716136_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
AXH56985.1\|3716210_3717563_-\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
3718136:3718152	attR	NA	NA	NA	NA

DBSCAN-SWA_16

3850920 : 3856909

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH57099.1\|3850920_3851256_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.2e-10	44.6
AXH57100.1\|3851309_3852425_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.7e-95	49.3
AXH57101.1\|3852439_3853504_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AXH57102.1\|3853887_3854163_+	DUF4102 domain-containing protein	A0A2H4JAT5	uncultured_Caudovirales_phage	1.1e-28	65.6
AXH57103.1\|3854516_3855026_-	lysozyme	Q6V7L5	Burkholderia_virus	1.2e-52	59.8
AXH57104.1\|3855389_3855875_-	hypothetical protein	NA	NA	NA	NA
AXH57105.1\|3855952_3856195_-	hypothetical protein	A0A2H4JEE3	uncultured_Caudovirales_phage	1.4e-22	62.0
AXH57106.1\|3856534_3856909_+	hypothetical protein	H2BD46	Pseudomonas_phage	1.4e-21	51.4

DBSCAN-SWA_17

4120982 : 4177138

Cyanophage(50.0%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH57337.1\|4120982_4121594_-\|tRNA	tRNA-(ms[2]io[6]A)-hydroxylase	NA	NA	NA	NA
AXH57338.1\|4121690_4122161_-	DUF1289 domain-containing protein	NA	NA	NA	NA
AXH57339.1\|4122563_4125164_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
AXH57340.1\|4125442_4126015_+	manganese efflux pump MntP	NA	NA	NA	NA
AXH57341.1\|4126314_4127478_+	hypothetical protein	NA	NA	NA	NA
AXH57342.1\|4127458_4127869_+	hypothetical protein	NA	NA	NA	NA
AXH57343.1\|4127944_4128280_+	hypothetical protein	NA	NA	NA	NA
AXH59229.1\|4128414_4129392_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH57344.1\|4129484_4129679_-	hypothetical protein	NA	NA	NA	NA
AXH57345.1\|4129722_4134582_-	NAD-glutamate dehydrogenase	NA	NA	NA	NA
AXH57346.1\|4134950_4135310_+	hypothetical protein	NA	NA	NA	NA
AXH57347.1\|4135356_4136103_+	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA
AXH57348.1\|4136313_4137273_+	MoxR family ATPase	NA	NA	NA	NA
AXH57349.1\|4137277_4138222_+	DUF58 domain-containing protein	NA	NA	NA	NA
AXH57350.1\|4138218_4138713_+	DUF4381 domain-containing protein	NA	NA	NA	NA
AXH57351.1\|4138705_4139764_+	VWA domain-containing protein	NA	NA	NA	NA
AXH57352.1\|4139760_4141479_+	VWA domain-containing protein	NA	NA	NA	NA
AXH57353.1\|4141475_4143134_+	protein BatD	NA	NA	NA	NA
AXH57354.1\|4143176_4144421_+	exonuclease subunit SbcD	NA	NA	NA	NA
AXH57355.1\|4144417_4148062_+	chromosome segregation protein SMC	A0A127KLF3	Cyanophage	1.1e-06	28.9
AXH57356.1\|4148009_4148129_-	DUF1534 domain-containing protein	NA	NA	NA	NA
AXH57357.1\|4148349_4148544_-	hypothetical protein	NA	NA	NA	NA
AXH57358.1\|4148719_4149892_-	lactonase family protein	NA	NA	NA	NA
AXH57359.1\|4149972_4150266_-	hypothetical protein	NA	NA	NA	NA
AXH57360.1\|4150384_4151377_-	FAH family protein	NA	NA	NA	NA
AXH57361.1\|4151412_4152726_-	MFS transporter	NA	NA	NA	NA
AXH57362.1\|4152940_4154683_+	dihydroxy-acid dehydratase	NA	NA	NA	NA
AXH57363.1\|4154776_4155490_+	FadR family transcriptional regulator	NA	NA	NA	NA
AXH57364.1\|4155820_4156405_+	PAAR domain-containing protein	NA	NA	NA	NA
AXH59230.1\|4157148_4158126_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH57365.1\|4158291_4159395_-\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
AXH59231.1\|4159543_4160521_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH57366.1\|4160941_4161382_+	hypothetical protein	NA	NA	NA	NA
AXH59232.1\|4161428_4161533_-	DUF1534 domain-containing protein	NA	NA	NA	NA
AXH57367.1\|4161569_4163960_-	RND family transporter	NA	NA	NA	NA
AXH57368.1\|4163987_4165037_-	hypothetical protein	NA	NA	NA	NA
AXH57369.1\|4165269_4166625_-	DUF1329 domain-containing protein	NA	NA	NA	NA
AXH57370.1\|4167130_4168288_-	glutathionylspermidine synthase family protein	A0A219Y9C1	Aeromonas_phage	3.2e-64	38.8
AXH57371.1\|4168299_4169046_-	DUF1190 domain-containing protein	NA	NA	NA	NA
AXH57372.1\|4169073_4169499_-	DUF350 domain-containing protein	NA	NA	NA	NA
AXH57373.1\|4169512_4170178_-	DUF2491 family protein	NA	NA	NA	NA
AXH57374.1\|4170258_4170813_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
AXH57375.1\|4170843_4171551_-	PspA/IM30 family protein	NA	NA	NA	NA
AXH57376.1\|4171577_4172231_-	DUF2170 family protein	NA	NA	NA	NA
AXH57377.1\|4172467_4175134_-	aminopeptidase N	NA	NA	NA	NA
AXH57378.1\|4175146_4175947_-	DUF2797 domain-containing protein	NA	NA	NA	NA
AXH57379.1\|4175976_4176237_-	DUF1315 family protein	NA	NA	NA	NA
AXH57380.1\|4176265_4177138_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_18

4903493 : 5027637

115

uncultured_virus(27.27%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH59296.1\|4903493_4904471_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH57966.1\|4904616_4904865_-	hypothetical protein	NA	NA	NA	NA
AXH57967.1\|4905322_4906336_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
AXH57968.1\|4906594_4907539_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
AXH57969.1\|4907550_4908327_+	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.0e-15	26.2
AXH57970.1\|4908341_4909361_+	ABC transporter permease	NA	NA	NA	NA
AXH57971.1\|4909357_4910473_+	phosphotriesterase-related protein	NA	NA	NA	NA
AXH57972.1\|4910469_4911225_+	hypothetical protein	NA	NA	NA	NA
AXH57973.1\|4911237_4912401_+	M20 family peptidase	NA	NA	NA	NA
AXH59297.1\|4912539_4913517_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH57974.1\|4913809_4914007_+	hypothetical protein	NA	NA	NA	NA
AXH57975.1\|4914422_4914647_+	hypothetical protein	NA	NA	NA	NA
AXH57976.1\|4914681_4916298_-	hybrid sensor histidine kinase/response regulator	NA	NA	NA	NA
AXH57977.1\|4916374_4917739_-	TolC family protein	NA	NA	NA	NA
AXH57978.1\|4917750_4919889_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	7.7e-32	27.2
AXH57979.1\|4919885_4921142_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
AXH59298.1\|4921415_4922393_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH57980.1\|4922604_4922829_+	hypothetical protein	NA	NA	NA	NA
AXH57981.1\|4922891_4923392_-	hypothetical protein	NA	NA	NA	NA
AXH59299.1\|4923982_4924960_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH57982.1\|4925033_4927952_+	autotransporter domain-containing protein	NA	NA	NA	NA
AXH57983.1\|4927923_4928439_-	hypothetical protein	NA	NA	NA	NA
AXH57984.1\|4928558_4928930_+	LacI family transcriptional regulator	NA	NA	NA	NA
AXH57985.1\|4929012_4929171_-	hypothetical protein	NA	NA	NA	NA
AXH57986.1\|4929531_4931616_+	calcium-binding protein	NA	NA	NA	NA
AXH57987.1\|4932205_4933066_+	ParA family protein	NA	NA	NA	NA
AXH57988.1\|4933123_4934470_+	replicative DNA helicase	O80281	Escherichia_phage	1.6e-107	48.9
AXH57989.1\|4934848_4935253_-	hypothetical protein	NA	NA	NA	NA
AXH57990.1\|4935496_4936183_+	hypothetical protein	NA	NA	NA	NA
AXH57991.1\|4937362_4937692_+	hypothetical protein	NA	NA	NA	NA
AXH57992.1\|4937693_4938098_+	hypothetical protein	NA	NA	NA	NA
AXH59300.1\|4938094_4938340_+	hypothetical protein	NA	NA	NA	NA
AXH57993.1\|4938275_4938593_+	Arc family DNA-binding protein	NA	NA	NA	NA
AXH57994.1\|4938595_4940338_+	chromosome partitioning protein ParB	NA	NA	NA	NA
AXH57995.1\|4940374_4941112_+	DUF2857 domain-containing protein	NA	NA	NA	NA
AXH57996.1\|4941108_4942470_+	hypothetical protein	NA	NA	NA	NA
AXH57997.1\|4943275_4944055_+	TIGR03761 family integrating conjugative element protein	NA	NA	NA	NA
AXH57998.1\|4944051_4944615_+	DUF3158 family protein	NA	NA	NA	NA
AXH57999.1\|4944620_4945454_+	phage regulatory protein	Q8HA97	Salmonella_phage	1.3e-22	46.3
AXH58000.1\|4945465_4945927_+	single-stranded DNA-binding protein	NA	NA	NA	NA
AXH58001.1\|4946256_4946544_+	hypothetical protein	NA	NA	NA	NA
AXH58002.1\|4946640_4946820_+	hypothetical protein	NA	NA	NA	NA
AXH58003.1\|4947257_4948826_+	hypothetical protein	NA	NA	NA	NA
AXH58004.1\|4948828_4950781_+	DEAD/DEAH box helicase	B3GAN0	uncultured_virus	5.7e-34	28.6
AXH58005.1\|4951102_4951786_-	hypothetical protein	NA	NA	NA	NA
AXH58006.1\|4952329_4952899_+	hypothetical protein	NA	NA	NA	NA
AXH58007.1\|4953021_4955043_+	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	7.5e-37	29.2
AXH58008.1\|4955767_4955980_+	hypothetical protein	NA	NA	NA	NA
AXH58009.1\|4956495_4957029_+	regulator	NA	NA	NA	NA
AXH58010.1\|4957236_4957584_+	hypothetical protein	NA	NA	NA	NA
AXH59301.1\|4957710_4958688_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58011.1\|4959448_4960018_+	DUF3577 domain-containing protein	NA	NA	NA	NA
AXH58012.1\|4960351_4960714_+	hypothetical protein	NA	NA	NA	NA
AXH58013.1\|4960809_4961421_+	DUF3275 family protein	NA	NA	NA	NA
AXH58014.1\|4961509_4962034_+	hypothetical protein	NA	NA	NA	NA
AXH58015.1\|4962100_4962700_+	hypothetical protein	NA	NA	NA	NA
AXH58016.1\|4962730_4964182_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AXH58017.1\|4966270_4967797_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	5.0e-126	50.7
AXH59302.1\|4969410_4970388_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58018.1\|4970598_4971516_-	XamI family restriction endonuclease	NA	NA	NA	NA
AXH58019.1\|4971512_4973099_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AXH58020.1\|4973095_4973284_-	plasmid-related protein	NA	NA	NA	NA
AXH58021.1\|4973505_4974546_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58022.1\|4975153_4975858_+	hypothetical protein	NA	NA	NA	NA
AXH58023.1\|4975866_4976613_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA
AXH58024.1\|4977151_4977658_+	integrating conjugative element protein	NA	NA	NA	NA
AXH58025.1\|4977669_4979829_+	conjugative coupling factor TraD, PFGI-1 class	NA	NA	NA	NA
AXH58026.1\|4979868_4980618_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA
AXH58027.1\|4980627_4982085_+	ATP-dependent helicase	A0A088C4M0	Shewanella_sp._phage	3.3e-42	30.7
AXH58028.1\|4982107_4982539_-	hypothetical protein	NA	NA	NA	NA
AXH58029.1\|4982708_4983041_+	DUF4177 domain-containing protein	NA	NA	NA	NA
AXH58030.1\|4983120_4983486_+	conjugal transfer protein	NA	NA	NA	NA
AXH58031.1\|4983482_4983722_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA
AXH58032.1\|4983741_4984110_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA
AXH58033.1\|4984125_4984518_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA
AXH58034.1\|4984514_4985183_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA
AXH58035.1\|4985179_4986103_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA
AXH58036.1\|4986092_4987589_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA
AXH58037.1\|4987566_4988022_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA
AXH59303.1\|4988231_4990979_+	conjugative transfer ATPase	NA	NA	NA	NA
AXH58038.1\|4990975_4991275_+	hypothetical protein	NA	NA	NA	NA
AXH58039.1\|4991271_4991964_+	DsbA family protein	NA	NA	NA	NA
AXH58040.1\|4992538_4993546_+	type III secretion system YopJ family effector HopZ4	NA	NA	NA	NA
AXH58041.1\|4994121_4994595_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA
AXH58042.1\|4994591_4995530_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA
AXH58043.1\|4995550_4996918_+	integrating conjugative element protein	NA	NA	NA	NA
AXH58044.1\|4996920_4997289_+	hypothetical protein	NA	NA	NA	NA
AXH59304.1\|4998645_4999623_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58045.1\|5000099_5000510_-	DUF3742 family protein	NA	NA	NA	NA
AXH59305.1\|5001090_5002068_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH59306.1\|5004240_5005218_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH59307.1\|5005683_5006661_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58046.1\|5006780_5007017_+	hypothetical protein	NA	NA	NA	NA
AXH58047.1\|5007264_5007975_+	hypothetical protein	NA	NA	NA	NA
AXH58048.1\|5007983_5008730_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA
AXH58049.1\|5008714_5009272_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
AXH58050.1\|5009268_5009775_+	integrating conjugative element protein	NA	NA	NA	NA
AXH58051.1\|5009786_5011946_+	conjugative coupling factor TraD, PFGI-1 class	NA	NA	NA	NA
AXH58052.1\|5011984_5012734_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA
AXH58053.1\|5012743_5014180_+	ATP-dependent helicase	A0A088C4M0	Shewanella_sp._phage	4.2e-42	30.9
AXH58054.1\|5014345_5015590_-	serine kinase	NA	NA	NA	NA
AXH58055.1\|5015642_5016899_-	serine kinase	NA	NA	NA	NA
AXH58056.1\|5016985_5018086_-	amidinotransferase	D5GV78	Campylobacter_virus	1.0e-35	30.0
AXH59308.1\|5019029_5020217_-	MFS transporter	NA	NA	NA	NA
AXH58057.1\|5020791_5021124_+	DUF4177 domain-containing protein	NA	NA	NA	NA
AXH58058.1\|5021097_5021280_-	hypothetical protein	NA	NA	NA	NA
AXH58059.1\|5021203_5021566_+	conjugal transfer protein	NA	NA	NA	NA
AXH58060.1\|5021562_5021802_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA
AXH58061.1\|5021821_5022187_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA
AXH58062.1\|5022202_5022595_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA
AXH58063.1\|5022591_5023260_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA
AXH58064.1\|5023256_5024180_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA
AXH58065.1\|5024169_5025654_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA
AXH58066.1\|5025631_5026087_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA
AXH58067.1\|5026086_5027637_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.7e-118	54.5

DBSCAN-SWA_19

5521549 : 5563016

Staphylococcus_phage(20.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH59328.1\|5521549_5522527_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH59329.1\|5522762_5523740_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58467.1\|5523906_5524329_+	hypothetical protein	NA	NA	NA	NA
AXH58468.1\|5524383_5524569_+	hypothetical protein	NA	NA	NA	NA
AXH58469.1\|5524714_5526259_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	6.4e-129	49.2
AXH58470.1\|5526438_5527341_-	redox-regulated molecular chaperone Hsp33	NA	NA	NA	NA
AXH58471.1\|5527512_5527920_-	RNA-binding protein	NA	NA	NA	NA
AXH59330.1\|5528090_5528873_+	EAL domain-containing protein	NA	NA	NA	NA
AXH58472.1\|5528889_5529366_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
AXH58473.1\|5529362_5530268_+	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	3.6e-39	33.7
AXH58474.1\|5530724_5532056_+	glutamate/aspartate:proton symporter GltP	NA	NA	NA	NA
AXH58475.1\|5532147_5532423_+	hypothetical protein	NA	NA	NA	NA
AXH58476.1\|5532640_5532889_+	TIGR02647 family protein	NA	NA	NA	NA
AXH58477.1\|5533072_5535919_+	class I adenylate cyclase	NA	NA	NA	NA
AXH58478.1\|5535984_5536119_+	DUF1534 domain-containing protein	NA	NA	NA	NA
AXH58479.1\|5536088_5536496_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA
AXH58480.1\|5536633_5536864_-	DUF1289 domain-containing protein	NA	NA	NA	NA
AXH58481.1\|5536866_5537199_-	iron donor protein CyaY	NA	NA	NA	NA
AXH58482.1\|5537437_5537584_+	hypothetical protein	NA	NA	NA	NA
AXH58483.1\|5537593_5538841_+	diaminopimelate decarboxylase	NA	NA	NA	NA
AXH58484.1\|5538845_5539676_+	diaminopimelate epimerase	NA	NA	NA	NA
AXH58485.1\|5539689_5540424_+	DUF484 family protein	NA	NA	NA	NA
AXH58486.1\|5540426_5541326_+	tyrosine recombinase XerC	A0A166YH27	Gordonia_phage	7.0e-11	34.5
AXH58487.1\|5541318_5542011_+	HAD family hydrolase	NA	NA	NA	NA
AXH58488.1\|5542085_5542415_-	hypothetical protein	NA	NA	NA	NA
AXH59331.1\|5542513_5542939_-	YjbQ family protein	NA	NA	NA	NA
AXH59332.1\|5542930_5543194_+	hypothetical protein	NA	NA	NA	NA
AXH58489.1\|5543181_5544519_-	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	4.1e-31	29.6
AXH58490.1\|5544552_5544891_-	P-II family nitrogen regulator	NA	NA	NA	NA
AXH58491.1\|5545309_5545576_+	hypothetical protein	NA	NA	NA	NA
AXH58492.1\|5545617_5546499_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXH58493.1\|5546603_5547848_+	MFS transporter	NA	NA	NA	NA
AXH59333.1\|5549779_5550757_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58494.1\|5551502_5553023_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	3.2e-32	40.9
AXH58495.1\|5553047_5553920_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA
AXH58496.1\|5553946_5554780_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXH58497.1\|5554838_5555570_+	hypothetical protein	NA	NA	NA	NA
AXH59334.1\|5555579_5555771_-	hypothetical protein	NA	NA	NA	NA
AXH58498.1\|5555696_5556992_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
AXH58499.1\|5557023_5557440_+	RidA family protein	NA	NA	NA	NA
AXH58500.1\|5557452_5558130_+	DUF1028 domain-containing protein	NA	NA	NA	NA
AXH58501.1\|5558126_5559281_+	acetylornithine deacetylase	NA	NA	NA	NA
AXH58502.1\|5559382_5560012_+	hypothetical protein	NA	NA	NA	NA
AXH59335.1\|5560825_5561803_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH59336.1\|5562038_5563016_-\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_20

5663214 : 5776979

105

Escherichia_phage(15.79%)

protease,plate,bacteriocin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH59348.1\|5663214_5664192_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58589.1\|5664420_5665071_+	hypothetical protein	NA	NA	NA	NA
AXH58590.1\|5665193_5666726_-	SulP family inorganic anion transporter	NA	NA	NA	NA
AXH58591.1\|5666830_5667571_-	carbonic anhydrase	NA	NA	NA	NA
AXH58592.1\|5667776_5668835_-	radical SAM protein	NA	NA	NA	NA
AXH58593.1\|5668958_5669627_-	isoprenoid biosynthesis protein ElbB	NA	NA	NA	NA
AXH58594.1\|5669834_5670497_-	DedA family protein	NA	NA	NA	NA
AXH58595.1\|5670728_5671739_+	porphobilinogen synthase	NA	NA	NA	NA
AXH58596.1\|5671755_5673966_+	polyphosphate kinase 1	NA	NA	NA	NA
AXH58597.1\|5673952_5675455_-	exopolyphosphatase	NA	NA	NA	NA
AXH58598.1\|5675860_5676595_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-32	39.2
AXH58599.1\|5676581_5677229_-	amino acid ABC transporter permease	NA	NA	NA	NA
AXH58600.1\|5677228_5677894_-	amino acid ABC transporter permease	NA	NA	NA	NA
AXH58601.1\|5677923_5678709_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AXH58602.1\|5678958_5679663_+	FadR family transcriptional regulator	NA	NA	NA	NA
AXH59349.1\|5679784_5680114_+	thioredoxin TrxA	A0A1V0SD63	Indivirus	4.6e-13	41.7
AXH58603.1\|5680345_5681605_+	transcription termination factor Rho	NA	NA	NA	NA
AXH59350.1\|5681733_5683200_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA
AXH58604.1\|5683199_5684168_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
AXH58605.1\|5684376_5685045_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
AXH58606.1\|5685057_5686407_-	glycerol-3-phosphate transporter	NA	NA	NA	NA
AXH58607.1\|5687343_5687979_+	energy transducer TonB	NA	NA	NA	NA
AXH58608.1\|5688269_5688659_-	hypothetical protein	NA	NA	NA	NA
AXH58609.1\|5689057_5689849_-	hypothetical protein	NA	NA	NA	NA
AXH58610.1\|5689897_5690167_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AXH58611.1\|5690347_5690620_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AXH58612.1\|5690616_5690928_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AXH59351.1\|5691222_5692200_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58613.1\|5692326_5693283_-	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	6.1e-29	39.4
AXH58614.1\|5693353_5694304_-	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	2.8e-34	45.1
AXH59352.1\|5694415_5694631_-	hypothetical protein	NA	NA	NA	NA
AXH58615.1\|5694881_5695100_-	DUF1534 domain-containing protein	NA	NA	NA	NA
AXH58616.1\|5695116_5696136_-	sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
AXH58617.1\|5696174_5697041_-	ABC transporter permease	NA	NA	NA	NA
AXH58618.1\|5697131_5698013_-	ABC transporter ATP-binding protein	A0A076FI99	Aureococcus_anophage	1.5e-05	25.0
AXH58619.1\|5698029_5698926_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA
AXH59353.1\|5699283_5702244_+	autotransporter domain-containing protein	NA	NA	NA	NA
AXH58620.1\|5702358_5703585_-	MFS transporter	NA	NA	NA	NA
AXH58621.1\|5703701_5704964_+	alpha/beta fold hydrolase	NA	NA	NA	NA
AXH58622.1\|5705125_5705908_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXH58623.1\|5706078_5707029_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
AXH58624.1\|5707109_5707691_-	alpha/beta hydrolase	NA	NA	NA	NA
AXH58625.1\|5707905_5709216_-	MFS transporter	NA	NA	NA	NA
AXH58626.1\|5709823_5710816_+	AraC family transcriptional regulator	NA	NA	NA	NA
AXH58627.1\|5710981_5712220_-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	NA	NA	NA	NA
AXH58628.1\|5712271_5713459_-	2-octaprenyl-6-methoxyphenyl hydroxylase	NA	NA	NA	NA
AXH58629.1\|5713455_5714790_-	Xaa-Pro aminopeptidase	NA	NA	NA	NA
AXH58630.1\|5714865_5715420_-	hypothetical protein	NA	NA	NA	NA
AXH58631.1\|5715570_5715780_+	TIGR02449 family protein	NA	NA	NA	NA
AXH58632.1\|5715776_5716106_+	cell division protein ZapA	NA	NA	NA	NA
AXH58633.1\|5716409_5717021_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
AXH58634.1\|5717066_5717219_-	hypothetical protein	NA	NA	NA	NA
AXH59354.1\|5717321_5718299_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH59355.1\|5718704_5719433_-	hypothetical protein	NA	NA	NA	NA
AXH59356.1\|5720558_5721536_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58635.1\|5721864_5722968_-\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
AXH59357.1\|5723174_5724152_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58636.1\|5724615_5724951_-	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	6.0e-24	64.0
AXH58637.1\|5724923_5725634_-	hypothetical protein	A0A2I7RNK1	Vibrio_phage	1.3e-36	38.2
AXH58638.1\|5725873_5726809_+\|protease	YopT-type cysteine protease domain-containing protein	NA	NA	NA	NA
AXH58639.1\|5727212_5727611_-	transcriptional regulator	NA	NA	NA	NA
AXH58640.1\|5727735_5728482_+	NADP oxidoreductase	NA	NA	NA	NA
AXH58641.1\|5728917_5729940_+\|transposase	IS21-like element ISPsy4 family transposase	A0A2L1IVA1	Escherichia_phage	1.7e-77	46.1
AXH58642.1\|5729936_5730746_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.3e-77	62.0
AXH59358.1\|5732746_5733724_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH59359.1\|5733975_5734506_+	hypothetical protein	NA	NA	NA	NA
AXH58643.1\|5734735_5735350_-	histidine phosphatase family protein	NA	NA	NA	NA
AXH58644.1\|5735453_5735795_-	hypothetical protein	NA	NA	NA	NA
AXH58645.1\|5735984_5736407_+	DUF1493 family protein	NA	NA	NA	NA
AXH58646.1\|5736958_5738044_+	restriction endonuclease	A0A1S5SAB0	Streptococcus_phage	2.6e-68	39.9
AXH58647.1\|5738177_5738915_+	hypothetical protein	NA	NA	NA	NA
AXH58648.1\|5738821_5739202_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	2.3e-32	84.1
AXH58649.1\|5739191_5739431_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	A0A2H4JBG1	uncultured_Caudovirales_phage	5.7e-29	81.0
AXH58650.1\|5739594_5740068_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXH58651.1\|5740168_5740717_-	N-acetyltransferase	NA	NA	NA	NA
AXH58652.1\|5740840_5741371_+	hypothetical protein	NA	NA	NA	NA
AXH58653.1\|5741404_5742679_-	outer membrane porin, OprD family	NA	NA	NA	NA
AXH58654.1\|5742893_5743127_-	hypothetical protein	NA	NA	NA	NA
AXH58655.1\|5743350_5744457_-	agmatine deiminase	A7IVE6	Paramecium_bursaria_Chlorella_virus	2.7e-105	50.6
AXH58656.1\|5744462_5745341_-	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	6.1e-76	48.1
AXH58657.1\|5745505_5745601_-	DUF1534 domain-containing protein	NA	NA	NA	NA
AXH58658.1\|5745765_5748678_-	aminotransferase	A0A1V0SKB7	Klosneuvirus	1.0e-18	24.3
AXH58659.1\|5748918_5750001_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.4e-98	53.6
AXH58660.1\|5750081_5750627_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.6e-53	58.0
AXH58661.1\|5750791_5752609_+	sensor histidine kinase	NA	NA	NA	NA
AXH58662.1\|5752605_5753991_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
AXH58663.1\|5753977_5754451_+	thioesterase	NA	NA	NA	NA
AXH58664.1\|5754826_5755669_-	3'(2'),5'-bisphosphate nucleotidase	NA	NA	NA	NA
AXH58665.1\|5755665_5756232_-	ADP compounds hydrolase NudE	NA	NA	NA	NA
AXH58666.1\|5756328_5756985_+	GMP/IMP nucleotidase	NA	NA	NA	NA
AXH58667.1\|5757026_5757908_+	LysR family transcriptional regulator	NA	NA	NA	NA
AXH58668.1\|5758011_5758848_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
AXH58669.1\|5758844_5761181_+	CbbBc protein	NA	NA	NA	NA
AXH58670.1\|5761390_5761852_+	hypothetical protein	NA	NA	NA	NA
AXH58671.1\|5761910_5763839_-	RecQ family ATP-dependent DNA helicase	F2NZ48	Diadromus_pulchellus_ascovirus	7.6e-55	40.7
AXH58672.1\|5764014_5764836_+	hypothetical protein	NA	NA	NA	NA
AXH58673.1\|5766000_5766750_+	hypothetical protein	NA	NA	NA	NA
AXH58674.1\|5766818_5767352_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AXH58675.1\|5767366_5768869_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AXH58676.1\|5768900_5769383_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AXH58677.1\|5769379_5771215_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AXH58678.1\|5771178_5772249_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AXH58679.1\|5772245_5774849_+	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	1.7e-89	28.6
AXH58680.1\|5774928_5775639_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AXH58681.1\|5775635_5776979_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_21

5968460 : 6027542

Rhizobium_phage(16.67%)

holin,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH59371.1\|5968460_5970353_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
AXH58835.1\|5970929_5972300_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
AXH58836.1\|5972378_5974070_-	membrane protein insertase YidC	NA	NA	NA	NA
AXH58837.1\|5974072_5974318_-	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
AXH58838.1\|5974310_5974712_-	ribonuclease P protein component	NA	NA	NA	NA
AXH58839.1\|5974728_5974863_-	50S ribosomal protein L34	NA	NA	NA	NA
AXH58840.1\|5975446_5976982_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
AXH58841.1\|5977020_5978124_+	DNA polymerase III subunit beta	B4UTW9	Rhizobium_phage	7.9e-57	36.8
AXH58842.1\|5978146_5979250_+	DNA replication/repair protein RecF	NA	NA	NA	NA
AXH58843.1\|5979254_5981672_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	1.3e-115	35.2
AXH58844.1\|5982305_5985842_+	DUF3883 domain-containing protein	A0A1B1IUI1	uncultured_Mediterranean_phage	5.7e-56	26.4
AXH58845.1\|5985999_5986620_+	NYN domain-containing protein	NA	NA	NA	NA
AXH58846.1\|5986629_5987937_+	DUF1156 domain-containing protein	NA	NA	NA	NA
AXH59372.1\|5987976_5988954_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58847.1\|5989160_5990264_+\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
AXH59373.1\|5991647_5992625_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58848.1\|5993850_5994099_+	hypothetical protein	NA	NA	NA	NA
AXH59374.1\|5994469_5995447_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AXH58849.1\|5997404_5997980_+	recombinase family protein	A0JC18	Ralstonia_phage	3.0e-23	36.9
AXH58850.1\|6000988_6001702_+	YecA family protein	NA	NA	NA	NA
AXH58851.1\|6001778_6003104_+	FAD-binding oxidoreductase	NA	NA	NA	NA
AXH58852.1\|6003691_6004462_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
AXH59375.1\|6004519_6005071_-	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
AXH58853.1\|6005084_6007139_-\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
AXH59376.1\|6007135_6008083_-\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
AXH58854.1\|6008163_6008715_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
AXH58855.1\|6008753_6009641_+	lysophospholipid acyltransferase	NA	NA	NA	NA
AXH58856.1\|6010201_6012565_-	formate dehydrogenase	NA	NA	NA	NA
AXH58857.1\|6012719_6014093_-	Trk system potassium transporter TrkA	NA	NA	NA	NA
AXH58858.1\|6014089_6015436_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
AXH58859.1\|6015432_6016377_-\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA
AXH58860.1\|6016436_6016943_-	peptide deformylase	E3SLL2	Synechococcus_phage	5.1e-19	42.3
AXH58861.1\|6017068_6018094_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
AXH58862.1\|6018217_6019336_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	1.1e-26	38.1
AXH58863.1\|6019374_6019932_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
AXH58864.1\|6019939_6020917_-	NADPH:quinone reductase	NA	NA	NA	NA
AXH59377.1\|6021010_6021295_-	DUF3630 family protein	NA	NA	NA	NA
AXH58865.1\|6021526_6022441_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
AXH58866.1\|6022440_6023265_+	shikimate dehydrogenase	NA	NA	NA	NA
AXH58867.1\|6023326_6024895_-	SulP family inorganic anion transporter	NA	NA	NA	NA
AXH58868.1\|6025072_6025999_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
AXH58869.1\|6026036_6027542_-\|holin	choline-sulfatase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP031227

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

38762 : 55205

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH60455.1\|38762_41789_-\|transposase	Tn3-like element ISPsy30 family transposase	NA	NA	NA	NA
AXH60456.1\|41778_42375_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.2e-40	50.3
AXH60457.1\|42691_43534_-	type III effector	NA	NA	NA	NA
AXH60458.1\|44167_45694_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	5.0e-126	50.7
AXH60459.1\|45755_45914_-	hypothetical protein	NA	NA	NA	NA
AXH60460.1\|45961_46771_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.3e-77	62.0
AXH60461.1\|46767_47790_-\|transposase	IS21-like element ISPsy4 family transposase	A0A2L1IVA1	Escherichia_phage	1.7e-77	46.1
AXH60462.1\|47858_48059_-	hypothetical protein	NA	NA	NA	NA
AXH60463.1\|48055_48388_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
AXH60464.1\|48695_49448_+	hypothetical protein	NA	NA	NA	NA
AXH60475.1\|49582_50560_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	4.1e-97	57.9
AXH60465.1\|50708_51812_+\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
AXH60476.1\|51977_52955_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	4.1e-97	57.9
AXH60466.1\|53975_55205_+\|transposase	IS91 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP031226

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

57625 : 66170

Ralstonia_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH59432.1\|57625_58423_-	serine/threonine protein phosphatase	A0A120MVX3	Ralstonia_phage	2.0e-09	28.2
AXH59433.1\|58531_59353_+	EAL domain-containing protein	NA	NA	NA	NA
AXH59434.1\|59366_59792_-	hypothetical protein	G3KB11	Pseudomonas_phage	6.8e-25	44.2
AXH59435.1\|59794_62416_-	DNA topoisomerase III	A0A0N9R437	Chrysochromulina_ericina_virus	1.6e-07	29.0
AXH59436.1\|62412_63153_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
AXH59437.1\|63137_63611_-	DUF1064 domain-containing protein	B8Q5A6	Abalone_shriveling_syndrome-associated_virus	2.5e-12	43.0
AXH59438.1\|63614_63884_-	hypothetical protein	M4SM17	Vibrio_phage	2.6e-06	40.0
AXH59439.1\|64067_66170_+	ATP-dependent helicase	A7KV33	Bacillus_phage	8.5e-68	28.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031225

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP031227

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP031226

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection