CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP019187	Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729 plasmid pATCC10729_01, complete sequence	0 crisprs	csa3,DEDDh	0	6
CP019188	Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729 plasmid pATCC10729_02, complete sequence	0 crisprs	NA	0	1
CP019186	Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729 chromosome, complete genome	3 crisprs	PD-DExK,WYL,cas3,csa3,DEDDh,DinG	4	8

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 10484

uncultured_Caudovirales_phage(60.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM38183.1\|1376_1742_+	transcriptional regulator	NA	NA	NA	NA
AUM38184.1\|1738_1975_+	mercury resistance protein	NA	NA	NA	NA
AUM38292.1\|1958_2096_-	mercury resistance protein	NA	NA	NA	NA
AUM38185.1\|2040_2253_+\|transposase	transposase	NA	NA	NA	NA
AUM38186.1\|2382_2940_+	resolvase	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
AUM38187.1\|2942_5915_+\|transposase	DDE transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.0
AUM38188.1\|6179_6533_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.7e-24	49.6
AUM38189.1\|6580_6943_+	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA
AUM38190.1\|6960_8712_+	arsenical pump-driving ATPase	NA	NA	NA	NA
AUM38191.1\|8756_10046_+	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	8.7e-172	74.0
AUM38192.1\|10058_10484_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.2e-50	70.7

DBSCAN-SWA_2

16462 : 17026

Wolbachia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM38198.1\|16462_17026_-	endonuclease	A0A1B2LRT6	Wolbachia_phage	1.7e-18	34.5

DBSCAN-SWA_3

49429 : 50263

unidentified_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM38229.1\|49429_50263_-	N-6 DNA methylase	H7BVT3	unidentified_phage	4.5e-12	37.4

DBSCAN-SWA_4

56762 : 73236

Enterobacteria_phage(23.08%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM38239.1\|56762_57317_-	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	3.3e-51	74.0
AUM38290.1\|57680_57869_+	hypothetical protein	NA	NA	NA	NA
AUM38240.1\|57991_58309_-	hypothetical protein	NA	NA	NA	NA
AUM38241.1\|58343_58604_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	5.3e-12	47.5
AUM38242.1\|58790_58982_-	hypothetical protein	NA	NA	NA	NA
AUM38243.1\|59024_59531_-	antirestriction protein	A0A1I9S7Y0	Rhodococcus_phage	3.7e-09	29.8
AUM38244.1\|60768_61188_-	adenine-specific methyltransferase	NA	NA	NA	NA
AUM38245.1\|61198_61420_-	hypothetical protein	NA	NA	NA	NA
AUM38246.1\|61419_62097_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.9e-29	37.4
AUM38247.1\|62448_63120_+	DNA breaking-rejoining protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.5e-79	59.5
AUM38248.1\|63299_63722_+	protein samA'	A0A1W6JNS2	Morganella_phage	3.1e-30	51.5
AUM38249.1\|63721_64993_+	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	2.7e-157	64.2
AUM38250.1\|65138_66110_-	chromosome partitioning protein ParB	Q1MVJ4	Enterobacteria_phage	9.6e-115	68.9
AUM38251.1\|66106_67312_-	chromosome partitioning protein ParA	Q1MVJ3	Enterobacteria_phage	1.7e-206	90.5
AUM38252.1\|67919_69746_+	OLD family endonuclease	E5E3R2	Burkholderia_phage	1.5e-12	23.2
AUM38253.1\|69917_70268_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	2.4e-20	55.2
AUM38254.1\|70416_70848_-	copper-binding protein	NA	NA	NA	NA
AUM38255.1\|71084_72563_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	1.8e-27	31.0
AUM38256.1\|72555_73236_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.9e-32	36.5

DBSCAN-SWA_5

76587 : 83832

Leptospira_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM38261.1\|76587_79734_+	cation transporter	S5VTK5	Leptospira_phage	2.3e-61	22.5
AUM38262.1\|79820_80261_+	hypothetical protein	NA	NA	NA	NA
AUM38263.1\|80379_82833_+	copper-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.3e-80	34.9
AUM38264.1\|82863_83061_+	hypothetical protein	NA	NA	NA	NA
AUM38265.1\|83091_83832_-	peptidase M23	E5G070	Clostridium_phage	8.0e-13	33.3

DBSCAN-SWA_6

88914 : 95613

Bacillus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM38272.1\|88914_89595_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.1e-31	35.4
AUM38273.1\|89591_90992_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	8.3e-19	26.7
AUM38274.1\|91200_91635_+	copper-binding protein	NA	NA	NA	NA
AUM38291.1\|91931_92156_+	hypothetical protein	NA	NA	NA	NA
AUM38275.1\|92047_92644_+	resolvase	A0A219Y912	Aeromonas_phage	1.4e-20	35.4
AUM38276.1\|92767_93697_+	hypothetical protein	Q2A0A7	Sodalis_phage	1.9e-75	52.8
AUM38277.1\|93693_94305_-	hypothetical protein	NA	NA	NA	NA
AUM38278.1\|94301_94697_-	hypothetical protein	NA	NA	NA	NA
AUM38279.1\|94749_95613_-	DNA polymerase III subunit epsilon	K7RFY5	Vibrio_phage	1.1e-26	35.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP019188

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1202 : 94563

113

Escherichia_phage(60.91%)

plate,holin,terminase,lysis,head,portal,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM38293.1\|1202_1805_-	odaE	Q1MVM6	Enterobacteria_phage	5.4e-100	100.0
AUM38294.1\|1791_2235_-\|lysis	lysis protein	A0A077SK09	Escherichia_phage	1.3e-82	100.0
AUM38295.1\|2231_2561_-\|holin	holin	Q37876	Escherichia_phage	1.3e-52	100.0
AUM38296.1\|2635_2899_-	hypothetical protein	Q71TD9	Escherichia_phage	1.1e-22	67.1
AUM38297.1\|3334_3907_-	DNA-invertase	A0A0A7NPV4	Enterobacteria_phage	4.4e-83	85.0
AUM38298.1\|4438_4867_+\|tail	phage tail protein	K7PH60	Enterobacterial_phage	1.8e-49	69.3
AUM38299.1\|4895_5354_+\|tail	phage tail protein	A0A0F7LCR3	Escherichia_phage	3.2e-44	57.9
AUM38300.1\|5364_5826_+\|tail	phage tail protein	Q9MCR6	Enterobacteria_phage	2.9e-53	68.9
AUM38402.1\|5866_6340_+\|tail	phage tail protein	Q9MCR6	Enterobacteria_phage	9.0e-34	51.4
AUM38301.1\|6350_6779_+\|tail	phage tail protein	A0A0F7LCR3	Escherichia_phage	1.3e-39	54.9
AUM38302.1\|6789_7296_+\|tail	phage tail protein	Q9MCR6	Enterobacteria_phage	3.2e-53	64.1
AUM38303.1\|7306_7765_+\|tail	phage tail protein	A0A0F7LCR3	Escherichia_phage	2.2e-45	58.0
AUM38304.1\|7764_8376_+	Tail fiber assembly protein-like protein	M1SV83	Escherichia_phage	3.6e-83	78.6
AUM38305.1\|8381_10832_-\|tail	phage tail protein	A0A1B0V7G4	Salmonella_phage	3.4e-07	63.5
AUM38306.1\|10843_11278_-\|tail	phage tail protein	A0A077SLL3	Escherichia_phage	7.4e-75	99.3
AUM38307.1\|11356_12193_-\|tail	phage tail protein	A0A1B0V7F2	Salmonella_phage	1.4e-154	100.0
AUM38308.1\|12192_13626_-	bleomycin hydrolase	A0A1B0VAD6	Salmonella_phage	3.7e-272	100.0
AUM38309.1\|13622_13979_-	hypothetical protein	Q71TP1	Escherichia_phage	1.0e-61	100.0
AUM38310.1\|13978_17371_-	transglycosylase	Q1MVL3	Enterobacteria_phage	0.0e+00	97.9
AUM38311.1\|17452_18334_-	morphogenetic protein	Q71TC9	Escherichia_phage	6.3e-174	99.7
AUM38312.1\|18348_18960_-\|tail	phage tail protein	Q71TN8	Escherichia_phage	2.9e-109	99.5
AUM38313.1\|18970_19537_-	hypothetical protein	Q71TN7	Escherichia_phage	3.3e-99	98.9
AUM38314.1\|19595_19865_-	hypothetical protein	NA	NA	NA	NA
AUM38315.1\|20133_20808_-	hypothetical protein	Q71TC4	Escherichia_phage	6.8e-19	94.0
AUM38316.1\|21206_21428_+	host cell division inhibitor Icd-like protein	A0A077SLM6	Escherichia_phage	1.3e-38	100.0
AUM38317.1\|21424_22468_+	phage antirepressor Ant	Q71TN2	Escherichia_phage	1.6e-176	95.1
AUM38318.1\|22632_23433_+	DNA-binding protein	Q1MVK4	Enterobacteria_phage	9.2e-148	99.2
AUM38319.1\|23462_24308_+	Replication protein repL	Q1MVK3	Enterobacteria_phage	1.1e-151	98.9
AUM38403.1\|24358_24604_+	hypothetical protein	A0A1B0VDM5	Salmonella_phage	3.5e-13	45.0
AUM38320.1\|25057_25567_-\|plate	baseplate protein	Q1MVJ9	Enterobacteria_phage	1.3e-91	100.0
AUM38321.1\|25578_26160_-	hypothetical protein	Q1MVJ8	Enterobacteria_phage	7.3e-102	97.4
AUM38322.1\|26195_27011_-	hypothetical protein	A0A1B0V835	Salmonella_phage	1.4e-111	98.5
AUM38323.1\|27020_28610_-	hypothetical protein	A0A1B0V7E4	Salmonella_phage	4.0e-304	98.9
AUM38324.1\|28670_30377_-	hypothetical protein	Q71TM1	Escherichia_phage	0.0e+00	100.0
AUM38325.1\|30602_31604_-	chromosome partitioning protein ParB	Q38420	Escherichia_phage	1.7e-178	100.0
AUM38326.1\|31620_32817_-	chromosome partitioning protein ParA	A0A077SL49	Escherichia_phage	1.6e-225	100.0
AUM38327.1\|34086_34971_-	RepB family plasmid replication initiator protein	A0A077SLP3	Escherichia_phage	2.1e-161	100.0
AUM38328.1\|35305_35698_-	hypothetical protein	A0A1B0VBK3	Salmonella_phage	2.4e-72	100.0
AUM38329.1\|35875_36298_-	ppfA	A0A1B0VCB0	Salmonella_phage	2.7e-58	100.0
AUM38330.1\|36337_37126_-	hypothetical protein	A0A1B0V830	Salmonella_phage	7.3e-121	99.6
AUM38331.1\|37134_37419_-	alanine racemase	Q71TL3	Escherichia_phage	1.7e-48	100.0
AUM38332.1\|37588_37873_+	hypothetical protein	Q71TA2	Escherichia_phage	3.5e-49	100.0
AUM38333.1\|37865_38771_+	recombination-associated protein RdgC	A0A077SK17	Escherichia_phage	1.6e-159	99.7
AUM38334.1\|38767_41032_+	multidrug DMT transporter permease	A0A077SL51	Escherichia_phage	0.0e+00	68.4
AUM38335.1\|41829_42015_-	hypothetical protein	Q71T99	Escherichia_phage	1.5e-16	100.0
AUM38336.1\|42403_42595_-	hypothetical protein	Q71T98	Escherichia_phage	6.0e-29	100.0
AUM38337.1\|42786_43212_+	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	1.8e-70	100.0
AUM38338.1\|43843_45208_+	replicative DNA helicase	A0A1B0VG30	Salmonella_phage	1.2e-253	100.0
AUM38339.1\|45207_46206_+	hypothetical protein	A0A1B0VCH7	Salmonella_phage	1.1e-195	100.0
AUM38340.1\|46252_46885_-\|plate	baseplate protein	Q71TK2	Escherichia_phage	6.9e-90	100.0
AUM38341.1\|46877_47894_-\|tail	phage tail tape measure protein	Q1MVH7	Enterobacteria_phage	1.0e-191	99.7
AUM38342.1\|47895_48681_-\|plate	baseplate	Q71T90	Escherichia_phage	4.6e-144	99.6
AUM38343.1\|48667_49396_-\|tail	phage tail protein	A0A077SK19	Escherichia_phage	1.0e-137	99.6
AUM38344.1\|49399_50617_-\|tail	phage tail protein	Q71T88	Escherichia_phage	1.4e-224	100.0
AUM38345.1\|50626_51004_-	hypothetical protein	Q38620	Escherichia_phage	2.2e-67	100.0
AUM38346.1\|51150_51396_+	hypothetical protein	Q71T86	Escherichia_phage	5.7e-40	100.0
AUM38347.1\|51398_51977_+	norphogenetic protein	Q71T85	Escherichia_phage	5.7e-107	99.5
AUM38348.1\|52043_52199_+	norphogenetic protein	Q71TJ4	Escherichia_phage	7.0e-20	100.0
AUM38349.1\|52140_52803_+	norphogenetic protein	Q71T83	Escherichia_phage	4.5e-124	100.0
AUM38350.1\|52700_53327_+	norphogenetic protein	Q71T82	Escherichia_phage	6.1e-123	100.0
AUM38351.1\|53323_54001_+	serine/threonine protein phosphatase	A0A077SLQ6	Escherichia_phage	7.6e-135	100.0
AUM38352.1\|53997_54699_+	hypothetical protein	Q71TJ0	Escherichia_phage	4.6e-143	99.1
AUM38353.1\|54780_54999_+	hypothetical protein	Q71TI9	Escherichia_phage	3.4e-36	100.0
AUM38354.1\|55000_56263_+	hypothetical protein	A0A1B0V7L1	Salmonella_phage	7.8e-234	99.3
AUM38355.1\|56335_56842_+	3'-phosphatase	A0A077SK53	Escherichia_phage	5.4e-93	98.8
AUM38356.1\|57036_57762_+	hypothetical protein	Q71T76	Escherichia_phage	3.4e-141	100.0
AUM38404.1\|57801_57993_+	hypothetical protein	A0A0P0ZC60	Stx2-converting_phage	9.5e-19	83.1
AUM38357.1\|57989_58205_+	hypothetical protein	NA	NA	NA	NA
AUM38358.1\|58197_58842_+	hypothetical protein	Q1MVG0	Enterobacteria_phage	1.7e-131	98.6
AUM38359.1\|58838_59492_+	hypothetical protein	A5VWB1	Enterobacteria_phage	2.3e-35	58.1
AUM38360.1\|59488_60241_+	hypothetical protein	Q1MVF9	Enterobacteria_phage	8.8e-108	89.0
AUM38361.1\|60586_61279_+	hypothetical protein	G9L6B3	Escherichia_phage	8.1e-100	99.4
AUM38362.1\|61275_61992_+	hypothetical protein	A0A2D1GLX9	Escherichia_phage	9.3e-67	60.1
AUM38363.1\|62074_62308_+	hypothetical protein	A0A1B0V7L5	Salmonella_phage	4.3e-37	98.7
AUM38364.1\|62486_62780_+	hypothetical protein	A0A077SK23	Escherichia_phage	1.6e-44	91.8
AUM38365.1\|62786_63161_+	hypothetical protein	A0A1B0VBU7	Salmonella_phage	7.5e-68	99.2
AUM38366.1\|63142_63817_+	hypothetical protein	A0A077SK55	Escherichia_phage	1.2e-116	98.6
AUM38367.1\|63813_64176_+	hypothetical protein	Q71TI4	Escherichia_phage	4.9e-56	99.2
AUM38368.1\|64486_64684_+	hypothetical protein	Q71TI2	Escherichia_phage	7.5e-27	98.5
AUM38369.1\|64661_64802_+	upfO	Q71TI1	Escherichia_phage	1.5e-16	100.0
AUM38370.1\|64837_65089_+	DNA polymerase III subunit theta	Q71T70	Escherichia_phage	7.6e-40	100.0
AUM38371.1\|65095_65668_-	DNA-binding protein	Q71TH9	Escherichia_phage	6.7e-108	100.0
AUM38372.1\|65842_66232_+	DNA repair protein	A0A077SK24	Escherichia_phage	6.4e-70	99.2
AUM38373.1\|66304_66526_+	prevent-host-death family protein	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
AUM38374.1\|66525_66906_+	death-on-curing family protein	Q71T66	Escherichia_phage	1.9e-63	100.0
AUM38375.1\|66910_67090_+	PdcA protein	Q71TH5	Escherichia_phage	1.2e-23	98.3
AUM38376.1\|67117_68161_+	hypothetical protein	A0A077SLM1	Escherichia_phage	4.3e-206	99.4
AUM38377.1\|68249_68702_+	Late promoter-activating protein	Q71T63	Escherichia_phage	3.0e-79	100.0
AUM38378.1\|68787_69981_+\|terminase	terminase	A0A077SL59	Escherichia_phage	4.7e-180	99.7
AUM38379.1\|69980_71465_+\|terminase	terminase	Q5QBP2	Enterobacteria_phage	4.3e-292	99.8
AUM38380.1\|71489_72341_-	hypothetical protein	A0A077SLM8	Escherichia_phage	6.1e-158	99.6
AUM38381.1\|72451_72661_-	c1 repressor inactivator	Q5XLQ8	Enterobacteria_phage	4.8e-32	100.0
AUM38382.1\|72626_72722_-	peptidase	Q38402	Escherichia_phage	2.8e-11	100.0
AUM38383.1\|72740_72854_-	peptidase	Q5XLQ7	Enterobacteria_phage	3.2e-14	100.0
AUM38384.1\|73265_73487_+	creatininase	Q5QBN7	Enterobacteria_phage	2.2e-35	98.6
AUM38385.1\|73494_74526_+	recombinase	Q71TG5	Escherichia_phage	9.9e-195	100.0
AUM38386.1\|74576_74888_+	lysogeny establishment protein	Q5XLQ4	Enterobacteria_phage	1.3e-44	94.2
AUM38387.1\|75135_75696_+	recombinase	Q71TG3	Escherichia_phage	1.2e-101	98.9
AUM38388.1\|75884_76526_+	maturation control protein	A0A077SK30	Escherichia_phage	2.5e-111	97.2
AUM38389.1\|76724_77333_+	N-acetyltransferase	NA	NA	NA	NA
AUM38390.1\|77415_77664_-	modulator protein	Q71TG0	Escherichia_phage	1.8e-41	100.0
AUM38391.1\|77660_78101_-	peptide-binding protein	A0A077SLF0	Escherichia_phage	1.7e-79	100.0
AUM38392.1\|78134_84902_-	helicase	Q1MVN7	Enterobacteria_phage	0.0e+00	98.7
AUM38393.1\|84977_86687_+\|portal	phage portal protein	A0A1B0V850	Salmonella_phage	0.0e+00	99.5
AUM38394.1\|86679_87699_+\|head	head processing protein	Q1MVN5	Enterobacteria_phage	6.4e-178	97.3
AUM38395.1\|87678_87855_-\|holin	antiholin	Q71TR5	Escherichia_phage	7.9e-28	96.6
AUM38405.1\|87990_88548_-	lysozyme	Q71TF3	Escherichia_phage	1.0e-105	98.9
AUM38396.1\|88717_89206_+	ssDNA-binding protein	A0A1B0VAF5	Salmonella_phage	1.9e-87	99.4
AUM38397.1\|89403_90081_+	hypothetical protein	A0A1B0VBT1	Salmonella_phage	4.9e-126	98.2
AUM38398.1\|90087_90870_+	hypothetical protein	A0A1B0VDP8	Salmonella_phage	2.7e-144	99.2
AUM38399.1\|90899_91208_-	hypothetical protein	O21974	Escherichia_phage	5.4e-48	97.1
AUM38400.1\|91197_94185_-	hypothetical protein	A0A1B0VFX4	Salmonella_phage	0.0e+00	99.4
AUM38401.1\|94197_94563_-	ddrA	Q1MVM8	Enterobacteria_phage	2.3e-45	99.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP019186

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP019186_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP019186_2

913074-913773

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

11 spacers

cas3

The CRISPR arrays of CP019186_2

>merge|CP019186|2|913074-913773|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCCAGAAAAGTTTGTTTAGGCAATCAAGCCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTATGAGGGCGCGCAACAGGCGATGCGTGAGTGTTCCCCGCGTCAGCGGGGATAAACCGCCGAAATACGATGCCGGAATATCGTAAACGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGGACGCTACTATCGGATTCGCTCCGGGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGATTTACTAAGGTCAACAAGGGATTGAATTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCATGCGCAGCACTGGATCGAGAGCGAAGGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTGAGAACAGGGTGCATGGGAGGGAATAATTGTGTTTCCCGCGCCAGCGGGGATAAACCGCGTTACAGCCAGTTCATGGAAAGTTTCAGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGATCCCAAAACATCTTTCCCTGGTTCCTCTCAGGTGTTCGCCGCGCCAGCGGGGATAAACCGGGGATCGCGTTGGCGGTCGCATCCGTTGCCGTGTGTTACCCGCGTCAGCGGGGATAAACCGTACCAACAATTCAGCGTTACGCCAACGGTAACGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP019186|2|1|913074-913712|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTATGAGGGCGCGCAACAGGCGATGCGTGA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CCGAAATACGATGCCGGAATATCGTAAACGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGGACGCTACTATCGGATTCGCTCCGGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTTACTAAGGTCAACAAGGGATTGAATTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATGCGCAGCACTGGATCGAGAGCGAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGAGAACAGGGTGCATGGGAGGGAATAATT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG
GTGTTCGCCGCGCCAGCGGGGATAAACCG	GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT
GTGTTACCCGCGTCAGCGGGGATAAACCG

>CP019186|2|2|913074-913773|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTATGAGGGCGCGCAACAGGCGATGCGTGA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CCGAAATACGATGCCGGAATATCGTAAACGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGGACGCTACTATCGGATTCGCTCCGGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTTACTAAGGTCAACAAGGGATTGAATTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATGCGCAGCACTGGATCGAGAGCGAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGAGAACAGGGTGCATGGGAGGGAATAATT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG
GTGTTCGCCGCGCCAGCGGGGATAAACCG	GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT
GTGTTACCCGCGTCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP019186|2|1|913074-913773|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTATGAGGGCGCGCAACAGGCGATGCGTGA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CCGAAATACGATGCCGGAATATCGTAAACGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGGACGCTACTATCGGATTCGCTCCGGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTTACTAAGGTCAACAAGGGATTGAATTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATGCGCAGCACTGGATCGAGAGCGAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGAGAACAGGGTGCATGGGAGGGAATAATT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG
GTGTTCGCCGCGCCAGCGGGGATAAACCG	GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT
GTGTTACCCGCGTCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP019186.1\|AUM34767.1\|908951_910589_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP019186.1\|AUM34761.1\|902871_904167_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase	unknown	unknown	gnl\|CDD\|237291
CP019186.1\|AUM34766.1\|907923_908724_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP019186.1\|AUM34768.1\|910671_911970_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP019186.1\|AUM34765.1\|907165_907318_-\|fimbrial-assembly-protein	unknown	unknown	gnl\|CDD\|185169
CP019186.1\|AUM34771.1\|914755_915118_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP019186.1\|AUM34772.1\|915553_917353_+\|sulfite-reductase-[NADPH]-flavoprotein,-alpha-component	unknown	unknown	gnl\|CDD\|182862
CP019186.1\|AUM38052.1\|915046_915217_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP019186.1\|AUM34776.1\|921299_922877_-\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP019186.1\|AUM34775.1\|919962_920916_-\|pathogenicity-island-1-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP019186.1\|AUM34769.1\|912105_912777_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP019186.1\|AUM34778.1\|924290_925199_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP019186.1\|AUM34763.1\|906537_906894_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|226136
CP019186.1\|AUM34762.1\|904218_906453_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
CP019186.1\|AUM34760.1\|900057_902814_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP019186.1\|AUM34764.1\|906859_907156_+\|plasmid-stabilization-protein-ParE	unknown	unknown	gnl\|CDD\|226194
CP019186.1\|AUM34777.1\|922993_924040_-\|Zn-dependent-exopeptidase-M28	unknown	unknown	gnl\|CDD\|182299
CP019186.1\|AUM34774.1\|919140_919875_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP019186.1\|AUM34770.1\|913870_914668_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP019186.1\|AUM34773.1\|917352_919065_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402

Protein	Function_ID	Function_description	E-value
CP019186.1\|AUM34767.1\|908951_910589_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP019186.1\|AUM34761.1\|902871_904167_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP019186.1\|AUM34766.1\|907923_908724_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.26268e-157
CP019186.1\|AUM34768.1\|910671_911970_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP019186.1\|AUM34765.1\|907165_907318_-\|fimbrial-assembly-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	2.22026e-21
CP019186.1\|AUM34771.1\|914755_915118_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.66978e-58
CP019186.1\|AUM34772.1\|915553_917353_+\|sulfite-reductase-[NADPH]-flavoprotein,-alpha-component	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP019186.1\|AUM34778.1\|924290_925199_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP019186.1\|AUM34776.1\|921299_922877_-\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.94504e-91
CP019186.1\|AUM34775.1\|919962_920916_-\|pathogenicity-island-1-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP019186.1\|AUM34769.1\|912105_912777_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
CP019186.1\|AUM34763.1\|906537_906894_+\|transcriptional-regulator	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	7.81781e-20
CP019186.1\|AUM34762.1\|904218_906453_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP019186.1\|AUM34760.1\|900057_902814_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP019186.1\|AUM34764.1\|906859_907156_+\|plasmid-stabilization-protein-ParE	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	6.68104e-12
CP019186.1\|AUM34777.1\|922993_924040_-\|Zn-dependent-exopeptidase-M28	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP019186.1\|AUM34774.1\|919140_919875_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.30149e-138
CP019186.1\|AUM34770.1\|913870_914668_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.4605e-101
CP019186.1\|AUM34773.1\|917352_919065_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0

>CP019186.1|AUM34769.1|912105_912777_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP019186.1|AUM34768.1|910671_911970_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP019186.1|AUM34767.1|908951_910589_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPGNERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>CP019186.1|AUM34766.1|907923_908724_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFTSIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP019186.1|AUM34765.1|907165_907318_-|fimbrial-assembly-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSITLVF
>CP019186.1|AUM34764.1|906859_907156_+|plasmid-stabilization-protein-ParE
MITVKLTPKASEDLENIWHYGWLYFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>CP019186.1|AUM34763.1|906537_906894_+|transcriptional-regulator
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDDNGKINAKGQ
>CP019186.1|AUM34762.1|904218_906453_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>CP019186.1|AUM34761.1|902871_904167_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVILTEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSITLQQRSKSAALARLMKHEVNDIIAGEPWGYRRRARLSLNCLPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATCAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>CP019186.1|AUM34760.1|900057_902814_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>CP019186.1|AUM34770.1|913870_914668_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP019186.1|AUM34771.1|914755_915118_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>CP019186.1|AUM38052.1|915046_915217_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP019186.1|AUM34772.1|915553_917353_+|sulfite-reductase-[NADPH]-flavoprotein,-alpha-component
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>CP019186.1|AUM34773.1|917352_919065_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP019186.1|AUM34774.1|919140_919875_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNVQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP019186.1|AUM34775.1|919962_920916_-|pathogenicity-island-1-effector-protein-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>CP019186.1|AUM34776.1|921299_922877_-|CRISPR-associated-helicase-Cas3
MSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>CP019186.1|AUM34777.1|922993_924040_-|Zn-dependent-exopeptidase-M28
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP019186.1|AUM34778.1|924290_925199_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF

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Crispr_ID: CP019186_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP019186_3

922890-922977

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP019186_3

>merge|CP019186|3|922890-922977|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCTTAACGGATTAGGTAGTAACCTGAAACAGGGTGTTCCCCGCGCCAGCGGGGATAAAC

>CP019186|3|3|922890-922977|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCCTTAACGGATTAGGTAGTAACCTGAAACAGG
GTGTTCCCCGCGCCAGCGGGGATAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP019186.1\|AUM34782.1\|927804_928116_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP019186.1\|AUM34771.1\|914755_915118_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP019186.1\|AUM34780.1\|926634_927240_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP019186.1\|AUM34785.1\|929320_930370_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP019186.1\|AUM34768.1\|910671_911970_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP019186.1\|AUM34772.1\|915553_917353_+\|sulfite-reductase-[NADPH]-flavoprotein,-alpha-component	unknown	unknown	gnl\|CDD\|182862
CP019186.1\|AUM38052.1\|915046_915217_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP019186.1\|AUM34776.1\|921299_922877_-\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP019186.1\|AUM34786.1\|930350_931112_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP019186.1\|AUM34769.1\|912105_912777_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP019186.1\|AUM34781.1\|927257_927614_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371891
CP019186.1\|AUM34770.1\|913870_914668_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP019186.1\|AUM34784.1\|928844_929324_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP019186.1\|AUM34777.1\|922993_924040_-\|Zn-dependent-exopeptidase-M28	unknown	unknown	gnl\|CDD\|182299
CP019186.1\|AUM34779.1\|925208_926648_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP019186.1\|AUM34778.1\|924290_925199_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP019186.1\|AUM34783.1\|928134_928845_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP019186.1\|AUM34774.1\|919140_919875_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP019186.1\|AUM34775.1\|919962_920916_-\|pathogenicity-island-1-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP019186.1\|AUM34773.1\|917352_919065_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402

Protein	Function_ID	Function_description	E-value
CP019186.1\|AUM34782.1\|927804_928116_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP019186.1\|AUM34771.1\|914755_915118_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.66978e-58
CP019186.1\|AUM34780.1\|926634_927240_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP019186.1\|AUM34785.1\|929320_930370_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP019186.1\|AUM34768.1\|910671_911970_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP019186.1\|AUM34772.1\|915553_917353_+\|sulfite-reductase-[NADPH]-flavoprotein,-alpha-component	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP019186.1\|AUM34778.1\|924290_925199_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP019186.1\|AUM34776.1\|921299_922877_-\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.94504e-91
CP019186.1\|AUM34786.1\|930350_931112_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP019186.1\|AUM34769.1\|912105_912777_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
CP019186.1\|AUM34781.1\|927257_927614_+\|hypothetical-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP019186.1\|AUM34770.1\|913870_914668_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.4605e-101
CP019186.1\|AUM34784.1\|928844_929324_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP019186.1\|AUM34777.1\|922993_924040_-\|Zn-dependent-exopeptidase-M28	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP019186.1\|AUM34779.1\|925208_926648_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP019186.1\|AUM34783.1\|928134_928845_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.63431e-118
CP019186.1\|AUM34774.1\|919140_919875_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.30149e-138
CP019186.1\|AUM34775.1\|919962_920916_-\|pathogenicity-island-1-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP019186.1\|AUM34773.1\|917352_919065_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0

>CP019186.1|AUM34776.1|921299_922877_-|CRISPR-associated-helicase-Cas3
MSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>CP019186.1|AUM34775.1|919962_920916_-|pathogenicity-island-1-effector-protein-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>CP019186.1|AUM34774.1|919140_919875_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNVQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP019186.1|AUM34773.1|917352_919065_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP019186.1|AUM34772.1|915553_917353_+|sulfite-reductase-[NADPH]-flavoprotein,-alpha-component
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>CP019186.1|AUM38052.1|915046_915217_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP019186.1|AUM34771.1|914755_915118_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>CP019186.1|AUM34770.1|913870_914668_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP019186.1|AUM34769.1|912105_912777_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP019186.1|AUM34768.1|910671_911970_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP019186.1|AUM34777.1|922993_924040_-|Zn-dependent-exopeptidase-M28
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP019186.1|AUM34778.1|924290_925199_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP019186.1|AUM34779.1|925208_926648_+|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP019186.1|AUM34780.1|926634_927240_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP019186.1|AUM34781.1|927257_927614_+|hypothetical-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP019186.1|AUM34782.1|927804_928116_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP019186.1|AUM34783.1|928134_928845_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAALQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP019186.1|AUM34784.1|928844_929324_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP019186.1|AUM34785.1|929320_930370_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDSGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP019186.1|AUM34786.1|930350_931112_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: CP019186_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP019186_4

3171163-3171252

Orphan

Consensus_repeat	Method
AAACAGTACTCGTCCGTAGGCCGGATAAGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP019186_4

>merge|CP019186|4|3171163-3171252|CRISPRCasFinder
AAACAGTACTCGTCCGTAGGCCGGATAAGACGCTTCGCGTCGCCATCCGGCAGTCACAAAACAGTACTCGCCCGTAGGCCGGATAAGACG

>CP019186|4|4|3171163-3171252|CRISPRCasFinder
AAACAGTACTCGTCCGTAGGCCGGATAAGACG	CTTCGCGTCGCCATCCGGCAGTCACA
AAACAGTACTCGCCCGTAGGCCGGATAAGACG

Protein	Signature genes	Signature genes Name	Protein_function
CP019186.1\|AUM36886.1\|3176913_3177021_-\|adenine-phosphoribosyltransferase	unknown	unknown	unknown
CP019186.1\|AUM36879.1\|3169153_3170116_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
CP019186.1\|AUM36873.1\|3160151_3160946_+\|polysaccharide-biosynthesis-protein-GumN	unknown	unknown	gnl\|CDD\|226258
CP019186.1\|AUM36881.1\|3171287_3173162_-\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
CP019186.1\|AUM36880.1\|3170343_3170988_-\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
CP019186.1\|AUM36887.1\|3176998_3177376_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182520
CP019186.1\|AUM36875.1\|3161743_3163396_-\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|236566
CP019186.1\|AUM36877.1\|3165003_3166680_+\|Kef-family-K(+)-transporter	unknown	unknown	gnl\|CDD\|182633
CP019186.1\|AUM36878.1\|3168185_3169157_+\|acetylesterase	unknown	unknown	gnl\|CDD\|236660
CP019186.1\|AUM36890.1\|3178222_3179146_+\|transposase	unknown	unknown	gnl\|CDD\|368098
CP019186.1\|AUM36876.1\|3163568_3164789_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
CP019186.1\|AUM36888.1\|3177444_3177972_+\|primosomal-replication-protein-N''	unknown	unknown	gnl\|CDD\|182236
CP019186.1\|AUM36884.1\|3174252_3176181_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|236138
CP019186.1\|AUM36874.1\|3161147_3161627_+\|aminoacyl-tRNA-deacylase	unknown	unknown	gnl\|CDD\|182634
CP019186.1\|AUM38133.1\|3170904_3171126_+\|hypothetical-protein	unknown	unknown	unknown
CP019186.1\|AUM36885.1\|3176294_3176846_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
CP019186.1\|AUM36889.1\|3177985_3178153_+\|DUF2496-domain-containing-protein	unknown	unknown	gnl\|CDD\|182920
CP019186.1\|AUM36882.1\|3173272_3173878_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
CP019186.1\|AUM38132.1\|3166728_3168033_-\|inosine/guanosine-kinase	unknown	unknown	gnl\|CDD\|185033
CP019186.1\|AUM36883.1\|3173877_3174207_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669

Protein	Function_ID	Function_description	E-value
CP019186.1\|AUM36879.1\|3169153_3170116_-\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	1.57177e-165
CP019186.1\|AUM36873.1\|3160151_3160946_+\|polysaccharide-biosynthesis-protein-GumN	gnl\|CDD\|226258	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown].	2.26283e-107
CP019186.1\|AUM36881.1\|3171287_3173162_-\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
CP019186.1\|AUM36880.1\|3170343_3170988_-\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	1.31162e-134
CP019186.1\|AUM36887.1\|3176998_3177376_-\|hypothetical-protein	gnl\|CDD\|182520	PRK10527, PRK10527, DUF454 family protein.	1.23989e-73
CP019186.1\|AUM36875.1\|3161743_3163396_-\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	gnl\|CDD\|236566	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed.	0
CP019186.1\|AUM36877.1\|3165003_3166680_+\|Kef-family-K(+)-transporter	gnl\|CDD\|182633	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional.	0
CP019186.1\|AUM36878.1\|3168185_3169157_+\|acetylesterase	gnl\|CDD\|236660	PRK10162, PRK10162, acetyl esterase.	0
CP019186.1\|AUM36890.1\|3178222_3179146_+\|transposase	gnl\|CDD\|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	2.0344e-116
CP019186.1\|AUM36876.1\|3163568_3164789_+\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.44171e-112
CP019186.1\|AUM36888.1\|3177444_3177972_+\|primosomal-replication-protein-N''	gnl\|CDD\|182236	PRK10093, PRK10093, primosomal replication protein N''; Provisional.	2.77698e-81
CP019186.1\|AUM36884.1\|3174252_3176181_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	0
CP019186.1\|AUM36874.1\|3161147_3161627_+\|aminoacyl-tRNA-deacylase	gnl\|CDD\|182634	PRK10670, PRK10670, Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK.	6.60949e-111
CP019186.1\|AUM36885.1\|3176294_3176846_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	8.05731e-100
CP019186.1\|AUM36889.1\|3177985_3178153_+\|DUF2496-domain-containing-protein	gnl\|CDD\|182920	PRK11038, PRK11038, hypothetical protein; Provisional.	8.73514e-19
CP019186.1\|AUM36882.1\|3173272_3173878_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	2.38799e-120
CP019186.1\|AUM38132.1\|3166728_3168033_-\|inosine/guanosine-kinase	gnl\|CDD\|185033	PRK15074, PRK15074, inosine/guanosine kinase; Provisional.	0
CP019186.1\|AUM36883.1\|3173877_3174207_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	3.74574e-46

>CP019186.1|AUM38133.1|3170904_3171126_+|hypothetical-protein
MRNTIFLHDELSLSSFTRARSAKQNNTHYENPLKGCRYFLKSAKRYHHHAFRSRKPPDAETVNEEKSRKEKVL
>CP019186.1|AUM36880.1|3170343_3170988_-|adenylate-kinase
MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIVVDYVLEFDVPDELIVDRIVGRRVHAASGRVYHVKFNPPKVEGKDDVTGEDLTTRKDDQEETVRKRLVEYHQMTAPLIGYYQKEAEAGNTKYAKVDGTQAVADVRAALEKILG
>CP019186.1|AUM36879.1|3169153_3170116_-|ferrochelatase
MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTPRLLWWPLLRGVILPLRSPRVAKLYQSIWMDGGSPLMVYSREQQQALAARLPDTPVALGMSYGSPSLESAVDELLASDVDHIVVLPLYPQYSCSTVGAVWDELGRILARKRRIPGISFIRDYADDGAYIDALAKSARESFARHGEPDVLLLSYHGIPQRYADEGDDYPQRCRDTTRELVSALGLPPEKVMMTFQSRFGREPWLTPYTDETLKMLGEKGTGHIQVMCPGFAADCLETLEEIAEQNREIFLEAGGKKYAYIPALNATPEHIDMMLKLTAPYR
>CP019186.1|AUM36878.1|3168185_3169157_+|acetylesterase
MKPENKIPVLTRLSDEMTAVVNFQQPDLPPWPADGDIETQRQYYLLERRFWNADAPSMTTRTCVVPTPYGDVTTRLYSPQPTSQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQARYPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLYGLQDSVSRRLFGGAWDGLTREDLDTYEKAYLRNDEDRESPWYCLFNNDLTHDVPPCFIASAEFDPLIDDSRLLHQTLQAHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMKTPR
>CP019186.1|AUM38132.1|3166728_3168033_-|inosine/guanosine-kinase
MKFPGKRKSKHYFPVNARDPLLQQIQPEQETNASWVVGIDQTLVDIEAKVDDDFITRYGLSAGHSLVIEDEVAEKLYQELTRENLITHQFAGGTIGNTMHNYSVLADDRSVLLGVMCSNIEIGSYAYRYLCNTSSRTDLNYLQAVDGPIGRCFTLIGESGERTFAISPGHMNQLRAESIPEAVIAGASALVLTSYLVRCKPGEPMPDATMKAIEYAKKHNVPVVMTLGTKFVIADNPQWWQAFLKENVSILAMNEEEAEALTGENDPLLAADKALDWVDLVLCTAGPIGLYMAGFTEEEAKRKTQHPLLPGAIAEFNQYEFSRAMRHKDCINPLRVYSHIAPYMGGPEKIMNTNGAGDGALAALLHDITANSYHRSNVPNSSKHKFTWLTYSSLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSLEESYWDR
>CP019186.1|AUM36877.1|3165003_3166680_+|Kef-family-K(+)-transporter
MHHATPLITTIVGGLVLAFILGMIANKLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAVAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLLDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMVEKGDVGIASLAVDMGITIGKVVAFIAIMMLVGRRLVPWIMARSAATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPLVLIQQPLAVLATLAIIVFGKSIAAFFLVRMFGHSPRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLEKYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGFGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMNLAHLDCARWLLLTIPNGYEAGEIVASAREKSPDIEIIARAHYDDEVKYITERGANQVVMGEREIARAMLELLETPPAGEVVAS
>CP019186.1|AUM36876.1|3163568_3164789_+|MFS-transporter
MAMSEPTQPLAGAPAAAAKARTSFGILGAISLSHLLNDMIQSLILAIYPLLQAEFSLTFVQIGLITLTFQLASSLLQPVVGYWTDKYPMPWSLPVGMCFTLSGLVLLAMAGSFGGVLLAAALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFGSSLGPLLAAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYAAQHRIAKGKPKAIIANPLPRNKVVLAVSVLLLLIFSKYFYMASISSYYTFYLMQKFGLSIQNAQLHLFAFLFAVAAGTVIGGPVGDKIGRKYVIWGSILGVAPFTLVLPYATLYWTGILTVIIGFILASAFSAILVYAQELLPGRIGMVSGLFFGFAFGMGGLGAAVLGLIADHTSIYLVYKICAFLPLLGILTIFLPDNRHKA
>CP019186.1|AUM36875.1|3161743_3163396_-|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase
MKFLKRGVALALLAAFALTTQPAQAYEKDKTYKITILHTNDHHGHFWRSEYGEYGLAAQKTLVDSIRKEVAQEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGYDAMAVGNHEFDNPLTVLRQQEKWAKFPFLSANIYQKSTGERLFKPWAIFTRQDIKIAVIGLTTDDTAKIGNPEYFTDIEFRKPAEEANVVIQELNMNEKPDVIIATTHMGHYDNGDHGSNAPGDVEMARSLPAGSLAMIVGGHSQDPVCMASENKKQVNYVPGTPCAPDKQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWDNGKSERVLYTPEIAENPQMLSLLTPFQNKGKAQLEVKIGSVNGLLEGDRSKVRFVQTNMGRVILAAQIARTGADFGVMSGGGIRDSIEAGDITYKSVLKVQPFGNIVVYADMSGKEVVDYLTAVAQMKPDSGAYPQFANVSFVAKAGKLTDLKIKGEPVDPAKTYRMATLSFNATGGDGYPRIDNKPGYVNTGFIDAEVLKEFIQQNSPLDAAAFTPKGEVSWL
>CP019186.1|AUM36874.1|3161147_3161627_+|aminoacyl-tRNA-deacylase
MTPAVKLLEKNKIPFNIHTYDHDPNETNFGDEVVRKLGLNADQVYKTLLVAVNGDMKQLAVAVTPVAGQLDLKKVAKALGAKKVDMADPMVAQRTTGYLVGGISPLGQKKRLPTLIDAPARTFATIYVSGGKRGLDIELAADDLAAILGAKFADIARRD
>CP019186.1|AUM36873.1|3160151_3160946_+|polysaccharide-biosynthesis-protein-GumN
MELLNQLKRLWRALRGTSNSWPAIDLSLPGGRHLHLVGSIHMGTRDMAPLPAKLVKKLRQADALVVEADISGNETPFSNLPKCPPLVERLSAGQLSALEKRVSELGMPLIHFDNQPLWQIAMVLQATQSQRLGLRPDYGIDYQLLQAAREVSLPVQELEGAKHQLELLCDLPDGGMALLDDTLTHWHTNARLLQVMIGWWLEQPPTSVGASLPRTFSQPLYDVLMVKRNEAWRDALLALPPGRYVVAVGALHLYGEGNLPQILK
>CP019186.1|AUM36881.1|3171287_3173162_-|molecular-chaperone-HtpG
MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTIADNGVGMNRDEVIDHLGTIAKSGTKSFLESMGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGDKPENGVFWESAGEGEYTVADITKNDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDGETVISWEKINKAQALWTRNKSEIKDDEYNEFYKHIAHDFTDPLTWSHNRVEGKQEYTSLLYIPSQAPWDLWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSNDLPLNVSREILQDSTVTRNLRSALTKRVLQMLEKLAKDDAEKYQTFWKQFGLVLKEGPAEDHANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKNSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKAFQSVAKADESIEKLADEVDENAKEAEKALEPFVERVKTLLGDRVKEVRLTHRLTDTPAIVTTDADEMSTQMAKLFAAAGQSVPEVKYIFELNPDHVLVKRTADTEDEAQFKEWVELLLDQALFAERGTLEDPNQFIRRMNQLLVS
>CP019186.1|AUM36882.1|3173272_3173878_-|recombination-protein-RecR
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQDVCNICSNPRRQENGQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLASEKISELILATNPTVEGEATANYIAELCAEAGVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIIF
>CP019186.1|AUM36883.1|3173877_3174207_-|YbaB/EbfC-family-nucleoid-associated-protein
MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF
>CP019186.1|AUM36884.1|3174252_3176181_-|DNA-polymerase-III-subunit-gamma/tau
MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIAMVQLSPAALGSDMAAIEQRMRELARTVPPGDLQLYYQTLLIGRKELPWAPDRRMGVEMTLLRALAFHPRMPLPEPETPRQSFAPVAPTAVMTPPQVQQQSAPAPQTSPAPLPASTSQVLAARNQLQRAQGVTKTKKSEPAAASRARPVNNSALERLASVSERVQARPAPSALETAPVKKEAYRWKATTPVVQTKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEQNGNAVCLHLRSTQRHLNSSGAQQKLAQALSDLTGETVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI
>CP019186.1|AUM36885.1|3176294_3176846_-|adenine-phosphoribosyltransferase
MTATAQQLEFLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIAETYELEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFDLGGEQRLEKQGITCYSLVPFPGH
>CP019186.1|AUM36886.1|3176913_3177021_-|adenine-phosphoribosyltransferase
MKSNKSAEAHESLLQLSFTASKFDRFRAQAQAVKE
>CP019186.1|AUM36887.1|3176998_3177376_-|hypothetical-protein
MQRTILIIIGWLAVVLGTLGVVLPLLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGGYLRHWQRYRAMPPGAKPRAIALILLTFGISLWLVNMMWVRVLLLVILACLLIFMWRIPVIDEKQQKR
>CP019186.1|AUM36888.1|3177444_3177972_+|primosomal-replication-protein-N''
MKTAMLLQTLEERLATLRQRCAPLAQHATLSARFDRHLFRTRSTLLQGYLEEADANLATLRQAVKHEQLPQVAWLAEHLASQLEAISRETAAWSLRQWDTAAPGLGRWQRRRIQHQEFERRLLAMTQERKIRLAQATSLVEQQTLQKEVEIYEGRLARCRHALEKIENVLARLTR
>CP019186.1|AUM36889.1|3177985_3178153_+|DUF2496-domain-containing-protein
MSLENAPDEVKLAVDLIVLLEENRLPARTVLRALEIVMRDYENKLKSTEDDSQTE
>CP019186.1|AUM36890.1|3178222_3179146_+|transposase
MERLPTTPHDAVFRQMLMQKEVARDFLAIHLPEDFLAICDLDSLKLESGSFVEDNLRSRYSDILYSLHTQHGPGYVYALIEHQSKSDRLMAFRLMRYAIAAMQRHLDAGHDTLPLVVPILFYHGPESPWPYSLNWHNMFVKPDMAKALYSCEFALVDLTIMPDNQLLQHRRIAMLELLQKHIRQRDLSELLDPLITLLTQDHLTDTQLSVLINYMLKAGNATEPRALIRQLAQGAPQYKEQLMTIAEWLEEKGRTEGLRKGLEQGLAQGREAEARAIARKMLANGLEPGLIASVTGITPEELSTLSH

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP019186_4	4.1\|3171195\|26\|CP019186\|CRISPRCasFinder	3171195-3171220	26	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	641392-641417	4	0.846
CP019186_4	4.1\|3171195\|26\|CP019186\|CRISPRCasFinder	3171195-3171220	26	NC_009468	Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence	142307-142332	5	0.808
CP019186_2	2.10\|913652\|32\|CP019186\|PILER-CR,CRISPRCasFinder,CRT	913652-913683	32	NZ_CP041606	Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence	6595-6626	6	0.812
CP019186_2	2.10\|913652\|32\|CP019186\|PILER-CR,CRISPRCasFinder,CRT	913652-913683	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	7	0.781
CP019186_2	2.1\|913103\|32\|CP019186\|PILER-CR,CRISPRCasFinder,CRT	913103-913134	32	MK605244	Nodularia phage vB_NspS-kac65v162, complete genome	141954-141985	8	0.75
CP019186_2	2.1\|913103\|32\|CP019186\|PILER-CR,CRISPRCasFinder,CRT	913103-913134	32	MK605242	Nodularia phage vB_NspS-kac65v151, complete genome	141539-141570	8	0.75
CP019186_2	2.1\|913103\|32\|CP019186\|PILER-CR,CRISPRCasFinder,CRT	913103-913134	32	MK605243	Nodularia phage vB_NspS-kac65v161, complete genome	141656-141687	8	0.75
CP019186_2	2.10\|913652\|32\|CP019186\|PILER-CR,CRISPRCasFinder,CRT	913652-913683	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	20537-20568	9	0.719
CP019186_2	2.10\|913652\|32\|CP019186\|PILER-CR,CRISPRCasFinder,CRT	913652-913683	32	NZ_CP038639	Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence	222471-222502	9	0.719
CP019186_2	2.10\|913652\|32\|CP019186\|PILER-CR,CRISPRCasFinder,CRT	913652-913683	32	MT075871	Klebsiella phage vB_KleS-HSE3, complete genome	29026-29057	9	0.719
CP019186_2	2.3\|913225\|32\|CP019186\|PILER-CR,CRISPRCasFinder,CRT	913225-913256	32	NZ_AP019800	Vibrio rotiferianus strain AM7 plasmid pAM7, complete sequence	202595-202626	10	0.688
CP019186_2	2.10\|913652\|32\|CP019186\|PILER-CR,CRISPRCasFinder,CRT	913652-913683	32	MN694675	Marine virus AFVG_250M635, complete genome	6608-6639	10	0.688

1. spacer 4.1|3171195|26|CP019186|CRISPRCasFinder matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.846

cttcgcgtcgccatccggcagtcaca	CRISPR spacer
cctcgcgtcgccatccggccgacacc	Protospacer
*.***************** * ***

2. spacer 4.1|3171195|26|CP019186|CRISPRCasFinder matches to NC_009468 (Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence) position: , mismatch: 5, identity: 0.808

cttcgcgtcgccatccggcagtcaca	CRISPR spacer
tcatgcgtcgccatccggcagtcgca	Protospacer
.. .*******************.**

3. spacer 2.10|913652|32|CP019186|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041606 (Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence) position: , mismatch: 6, identity: 0.812

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gggatcgcgttggaggtcgcctccgacgactt	Protospacer
************* ****** **** .* * *

4. spacer 2.10|913652|32|CP019186|PILER-CR,CRISPRCasFinder,CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgttggcggtcgcatccgttgccgt-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagtt	Protospacer
********* ********** *.**  *  **

5. spacer 2.1|913103|32|CP019186|PILER-CR,CRISPRCasFinder,CRT matches to MK605244 (Nodularia phage vB_NspS-kac65v162, complete genome) position: , mismatch: 8, identity: 0.75

cccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
ccagaaggtgtttgtataggcaaacaagcccc	Protospacer
** ..*.. ****** ******* ********

6. spacer 2.1|913103|32|CP019186|PILER-CR,CRISPRCasFinder,CRT matches to MK605242 (Nodularia phage vB_NspS-kac65v151, complete genome) position: , mismatch: 8, identity: 0.75

cccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
ccagaaggtgtttgtataggcaaacaagcccc	Protospacer
** ..*.. ****** ******* ********

7. spacer 2.1|913103|32|CP019186|PILER-CR,CRISPRCasFinder,CRT matches to MK605243 (Nodularia phage vB_NspS-kac65v161, complete genome) position: , mismatch: 8, identity: 0.75

cccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
ccagaaggtgtttgtataggcaaacaagcccc	Protospacer
** ..*.. ****** ******* ********

8. spacer 2.10|913652|32|CP019186|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gggatcgcattgccggtcgcatcgatgacgac	Protospacer
********.*** ********** .* .* ..

9. spacer 2.10|913652|32|CP019186|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038639 (Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gtgatcgccttgccggtcgcatccgccgaaac	Protospacer
* ****** *** ************..*  ..

10. spacer 2.10|913652|32|CP019186|PILER-CR,CRISPRCasFinder,CRT matches to MT075871 (Klebsiella phage vB_KleS-HSE3, complete genome) position: , mismatch: 9, identity: 0.719

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gggatcgcgtaggcggccgcatcgactacaag	Protospacer
********** *****.****** ..*.* .

11. spacer 2.3|913225|32|CP019186|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019800 (Vibrio rotiferianus strain AM7 plasmid pAM7, complete sequence) position: , mismatch: 10, identity: 0.688

ccgaaatacgatgccggaatatcgtaaacgga	CRISPR spacer
ccgaaatacgatgcccaaatatctgggttgat	Protospacer
*************** .******  .. .*.

12. spacer 2.10|913652|32|CP019186|PILER-CR,CRISPRCasFinder,CRT matches to MN694675 (Marine virus AFVG_250M635, complete genome) position: , mismatch: 10, identity: 0.688

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
tttgctgaattggcggacgcatccattgccgt	Protospacer
   ...* .******* *******.*******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1600939 : 1610110

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM35383.1\|1600939_1601887_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
AUM35384.1\|1601870_1602602_+	ABC transporter permease	NA	NA	NA	NA
AUM35385.1\|1602582_1602690_-	hypothetical protein	NA	NA	NA	NA
AUM35386.1\|1602749_1603481_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AUM35387.1\|1603703_1605389_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.8e-278	91.1
AUM35388.1\|1605385_1606105_+	DNA-binding response regulator	NA	NA	NA	NA
AUM35389.1\|1606151_1606619_+	hypothetical protein	Q9EYF4	Enterobacteria_phage	1.8e-74	90.3
AUM35390.1\|1606675_1607206_-	hypothetical protein	NA	NA	NA	NA
AUM35391.1\|1607377_1607836_-	hypothetical protein	Q9EYF5	Enterobacteria_phage	7.6e-54	73.2
AUM35392.1\|1608076_1610110_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_2

1677276 : 1685225

Klebsiella_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM35446.1\|1677276_1678680_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.8e-21	26.3
AUM35447.1\|1678831_1679827_+	UDP-N-acetylglucosamine 4-epimerase	A0A1V0QG29	Shearwaterpox_virus	1.5e-09	25.6
AUM35448.1\|1680053_1680947_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	6.2e-44	41.7
AUM35449.1\|1681323_1682397_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.1e-103	54.7
AUM35450.1\|1682398_1683262_+	glucose-1-phosphate thymidylyltransferase	A0A291LA53	Escherichia_phage	2.4e-109	67.4
AUM35451.1\|1683265_1683661_+	dTDP-6-deoxy-3,4-keto-hexulose isomerase	NA	NA	NA	NA
AUM35452.1\|1683660_1684125_+	N-acetyltransferase	NA	NA	NA	NA
AUM35453.1\|1684121_1685225_+	aminotransferase	E5ES42	Bathycoccus_sp._RCC1105_virus	1.9e-42	30.7

DBSCAN-SWA_3

1763613 : 1770881

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM35530.1\|1763613_1764033_+	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AUM35531.1\|1764035_1765304_+	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	4.9e-228	92.4
AUM35532.1\|1765757_1765970_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AUM38079.1\|1765980_1766169_+	cold-shock protein	NA	NA	NA	NA
AUM35533.1\|1766429_1767641_-	porin	Q1MVN1	Enterobacteria_phage	8.9e-110	56.2
AUM35534.1\|1768290_1768590_+	hypothetical protein	NA	NA	NA	NA
AUM35535.1\|1768681_1769377_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	8.1e-07	27.1
AUM35536.1\|1769450_1770881_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.8e-105	58.1

DBSCAN-SWA_4

1875196 : 1905971

Salmonella_phage(33.33%)

protease,terminase,integrase,tail

attL 1869639:1869653|attR 1880538:1880552

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1869639:1869653	attL	NA	NA	NA	NA
AUM35642.1\|1875196_1875427_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
AUM35643.1\|1875564_1875939_+	hypothetical protein	NA	NA	NA	NA
AUM35644.1\|1875939_1876815_+	hypothetical protein	NA	NA	NA	NA
AUM35645.1\|1876831_1877185_+	hypothetical protein	NA	NA	NA	NA
AUM35646.1\|1877348_1877630_+	hypothetical protein	NA	NA	NA	NA
AUM35647.1\|1877567_1878647_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	8.7e-101	52.5
AUM35648.1\|1878643_1879750_-	exodeoxyribonuclease 8	Q9QF34	Lambdoid_phage	3.3e-55	66.7
AUM35649.1\|1879780_1880068_+	lytic enzyme	Q8HA86	Salmonella_phage	1.9e-39	95.1
AUM35650.1\|1880064_1880598_+	hypothetical protein	A0A291LBG9	Klebsiella_phage	5.4e-11	44.8
1880538:1880552	attR	NA	NA	NA	NA
AUM35651.1\|1880854_1881022_-	lytic enzyme	NA	NA	NA	NA
AUM38084.1\|1881086_1881269_-	hypothetical protein	NA	NA	NA	NA
AUM35652.1\|1881323_1881815_+	DNA breaking-rejoining protein	Q9EYD0	Enterobacteria_phage	7.6e-44	56.2
AUM35653.1\|1881801_1881981_+\|tail	phage tail protein	Q9EYD1	Enterobacteria_phage	2.7e-07	53.2
AUM35654.1\|1882000_1882375_+\|terminase	terminase	Q8VNN7	Enterobacteria_phage	2.6e-60	83.7
AUM35655.1\|1882367_1883705_+	shikimate transporter	E5G6P0	Salmonella_phage	4.4e-78	52.4
AUM35656.1\|1883676_1883997_+	hypothetical protein	A0A0M4QWS3	Salmonella_phage	2.9e-44	79.2
AUM35657.1\|1883986_1884571_+\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	5.8e-83	80.6
AUM35658.1\|1884667_1884868_-	phage virulence factor	NA	NA	NA	NA
AUM35659.1\|1885058_1885175_-\|tail	phage tail protein	NA	NA	NA	NA
AUM35660.1\|1885437_1885563_+	arsenic transporter	NA	NA	NA	NA
AUM35661.1\|1885691_1885958_+	hypothetical protein	NA	NA	NA	NA
AUM38085.1\|1886198_1886384_+	hypothetical protein	S4TTF2	Salmonella_phage	1.1e-16	93.3
AUM35662.1\|1886710_1887325_-	disulfide bond formation protein B	NA	NA	NA	NA
AUM35663.1\|1887334_1887493_-	hypothetical protein	NA	NA	NA	NA
AUM35664.1\|1887625_1888540_-	EamA family transporter	NA	NA	NA	NA
AUM38086.1\|1889332_1889917_-	pilus assembly protein	NA	NA	NA	NA
AUM35665.1\|1890250_1890589_+	hypothetical protein	NA	NA	NA	NA
AUM35666.1\|1890632_1890854_+	hypothetical protein	NA	NA	NA	NA
AUM35667.1\|1891356_1891551_+	hypothetical protein	NA	NA	NA	NA
AUM35668.1\|1891679_1892099_+	N-acetyltransferase	NA	NA	NA	NA
AUM35669.1\|1892486_1892963_-	hypothetical protein	NA	NA	NA	NA
AUM35670.1\|1893290_1893686_-	cytoplasmic protein	C6ZCX4	Enterobacteria_phage	1.2e-15	32.8
AUM35671.1\|1894369_1895092_+	type III secretion protein SopE2	NA	NA	NA	NA
AUM35672.1\|1895765_1896416_+	serine/threonine-protein phosphatase	A0A222YWF0	Escherichia_phage	8.5e-59	51.4
AUM35673.1\|1896434_1896626_-	hypothetical protein	NA	NA	NA	NA
AUM35674.1\|1896736_1896976_-	hypothetical protein	NA	NA	NA	NA
AUM38087.1\|1897090_1898530_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AUM35675.1\|1898607_1901241_-	MCE family protein	NA	NA	NA	NA
AUM35676.1\|1901209_1902493_-	paraquat-inducible membrane protein A	NA	NA	NA	NA
AUM35677.1\|1902621_1903119_+	Free methionine-R-sulfoxide reductase	NA	NA	NA	NA
AUM35678.1\|1903216_1903903_+	RNA chaperone ProQ	NA	NA	NA	NA
AUM35679.1\|1903922_1905971_+\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	1.0e-86	33.5

DBSCAN-SWA_5

2099664 : 2108407

Escherichia_phage(33.33%)

tRNA,integrase

attL 2095637:2095649|attR 2109822:2109834

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2095637:2095649	attL	NA	NA	NA	NA
AUM35870.1\|2099664_2100819_+	chemoreceptor protein	A0A2H4J162	uncultured_Caudovirales_phage	1.2e-10	27.3
AUM35871.1\|2100964_2101948_+	zinc transporter ZntB	NA	NA	NA	NA
AUM35872.1\|2102223_2102406_+	hypothetical protein	NA	NA	NA	NA
AUM35873.1\|2102434_2103808_+	ATP-dependent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.1e-51	32.0
AUM35874.1\|2103851_2104787_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	7.2e-144	97.3
AUM35875.1\|2104838_2105030_-\|integrase	integrase	A0A0U2JGI6	Escherichia_phage	1.2e-29	96.8
AUM35876.1\|2105474_2107307_+	DUF4765 domain-containing protein	A0A0N7KZG3	Stx2-converting_phage	2.5e-47	34.7
AUM35877.1\|2107478_2107589_+	multidrug transporter	NA	NA	NA	NA
AUM35878.1\|2107581_2107920_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
AUM35879.1\|2107972_2108407_-	universal stress protein F	A0A1W6JNV4	Morganella_phage	9.4e-30	52.1
2109822:2109834	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2515069 : 2523342

Escherichia_phage(42.86%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM36271.1\|2515069_2515309_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
AUM38112.1\|2516180_2516990_+	cytolethal distending toxin subunit B-like protein	A5LH53	Enterobacteria_phage	2.1e-62	50.0
AUM36272.1\|2517062_2517440_+\|tail	phage tail protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
AUM36273.1\|2517587_2518130_-	hypothetical protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
AUM36274.1\|2518313_2519042_-	pertussis toxin-like subunit ArtA	A0A0U2KD26	Escherichia_phage	1.6e-61	52.5
AUM36275.1\|2519058_2519472_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	5.5e-19	37.7
AUM36276.1\|2520520_2521645_-	hypothetical protein	NA	NA	NA	NA
AUM36277.1\|2522091_2523342_-	isocitrate dehydrogenase (NADP(+))	Q77Z09	Phage_21	1.1e-19	92.6

DBSCAN-SWA_7

2772337 : 2779533

Enterobacteria_phage(16.67%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM36512.1\|2772337_2773021_+\|transposase	transposase	Q6H9S3	Enterobacteria_phage	1.2e-18	34.5
AUM36513.1\|2773169_2775446_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AUM36514.1\|2775476_2775797_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AUM36515.1\|2776120_2776342_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AUM36516.1\|2776471_2778418_-	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	9.1e-40	42.3
AUM36517.1\|2778414_2779533_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_8

3826211 : 3835011

Enterobacteria_phage(50.0%)

capsid,integrase

attL 3820547:3820563|attR 3833691:3833707

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3820547:3820563	attL	NA	NA	NA	NA
AUM37448.1\|3826211_3826763_-	Ash-like/host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.1e-35	73.1
AUM38154.1\|3827345_3827534_-	hypothetical protein	NA	NA	NA	NA
AUM37449.1\|3827446_3828307_+\|capsid	capsid protein	NA	NA	NA	NA
AUM37450.1\|3828310_3828550_+	hypothetical protein	Q7M294	Enterobacteria_phage	2.4e-19	59.3
AUM37451.1\|3828565_3829132_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.3e-60	65.4
AUM37452.1\|3829456_3832210_+	hypothetical protein	A0A1B1IUG5	uncultured_Mediterranean_phage	5.8e-24	25.6
AUM37453.1\|3832258_3833521_-\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	8.2e-74	41.0
AUM37454.1\|3833991_3835011_+	alcohol dehydrogenase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	2.1e-43	30.1
3833691:3833707	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP019187

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP019188

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP019186

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection