CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP011966	Clostridium beijerinckii NRRL B-598 chromosome, complete genome	2 crisprs	DEDDh,RT,cas3,csa3,c2c10_CAS-V-U3,DinG,WYL	0	2	14	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP011966_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011966_1

1111551-1111653

Orphan

Consensus_repeat	Method
CACATTAGAAAAAGGCGCGAAGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP011966_1

>merge|CP011966|1|1111551-1111653|CRISPRCasFinder
CACATTAGAAAAAGGCGCGAAGCGCGACAAAAAACATTTCACGTTAGAAAAAGGCGCAAAGCGCAATAAAGAACAGTCCACATTAGAAAAAGGCGCGAAGCGC

>CP011966|1|1|1111551-1111653|CRISPRCasFinder
CACATTAGAAAAAGGCGCGAAGCGC	GACAAAAAACATTTCACGTTAGAAAAAGGCGCAAAGCGCAATAAAGAACAGTC
CACATTAGAAAAAGGCGCGAAGCGC

Protein	Signature genes	Signature genes Name	Protein_function
CP011966.3\|ALB47725.1\|1097953_1098841_-\|delta-lactam-biosynthetic-de-N-acetylase	unknown	unknown	gnl\|CDD\|131930
CP011966.3\|ALB47707.1\|1121378_1122104_+\|pyruvate-formate-lyase-activating-protein	unknown	unknown	gnl\|CDD\|131546
CP011966.3\|ALB47705.1\|1124829_1124991_-\|rubredoxin	unknown	unknown	gnl\|CDD\|224687
CP011966.3\|ALB47719.1\|1106704_1107802_+\|ATP-dependent-6-phosphofructokinase	unknown	unknown	gnl\|CDD\|274155
CP011966.3\|ALB47721.1\|1104149_1105010_+\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
CP011966.3\|ALB47713.1\|1112902_1113646_+\|dihydroorotate-dehydrogenase-electron-transfer-subunit	unknown	unknown	gnl\|CDD\|234601
CP011966.3\|ALB47724.1\|1099401_1100499_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
CP011966.3\|ALB47706.1\|1122364_1124596_+\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
CP011966.3\|ALB47711.1\|1114655_1115330_+\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
CP011966.3\|ALB47716.1\|1109910_1110342_+\|aspartate-carbamoyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|234859
CP011966.3\|ALB47714.1\|1111994_1112867_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234651
CP011966.3\|ALB47708.1\|1118804_1121036_+\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
CP011966.3\|ALB47718.1\|1107896_1108673_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
CP011966.3\|ALB47720.1\|1105453_1106347_+\|IS982-family-transposase	unknown	unknown	gnl\|CDD\|372648
CP011966.3\|ALB47717.1\|1108982_1109909_+\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234849
CP011966.3\|ALB47710.1\|1115983_1116745_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|184406
CP011966.3\|ALB47723.1\|1100952_1102773_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274350
CP011966.3\|ALB47709.1\|1116778_1118161_-\|DUF2334-domain-containing-protein	unknown	unknown	gnl\|CDD\|200549
CP011966.3\|ALB47712.1\|1113667_1114564_+\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
CP011966.3\|ALB47722.1\|1102841_1103819_+\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399

Protein	Function_ID	Function_description	E-value
CP011966.3\|ALB47725.1\|1097953_1098841_-\|delta-lactam-biosynthetic-de-N-acetylase	gnl\|CDD\|131930	TIGR02884, spore_pdaA, delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Sporulation and germination].	8.56796e-123
CP011966.3\|ALB47707.1\|1121378_1122104_+\|pyruvate-formate-lyase-activating-protein	gnl\|CDD\|131546	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. [Energy metabolism, Anaerobic, Protein fate, Protein modification and repair].	2.98992e-115
CP011966.3\|ALB47705.1\|1124829_1124991_-\|rubredoxin	gnl\|CDD\|224687	COG1773, COG1773, Rubredoxin [Energy production and conversion].	8.8626e-19
CP011966.3\|ALB47719.1\|1106704_1107802_+\|ATP-dependent-6-phosphofructokinase	gnl\|CDD\|274155	TIGR02483, ATP-dependent_6-phosphofructokinase_1, phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal. [Energy metabolism, Glycolysis/gluconeogenesis].	2.97895e-165
CP011966.3\|ALB47721.1\|1104149_1105010_+\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	7.69384e-96
CP011966.3\|ALB47713.1\|1112902_1113646_+\|dihydroorotate-dehydrogenase-electron-transfer-subunit	gnl\|CDD\|234601	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed.	1.12962e-121
CP011966.3\|ALB47724.1\|1099401_1100499_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
CP011966.3\|ALB47706.1\|1122364_1124596_+\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
CP011966.3\|ALB47711.1\|1114655_1115330_+\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	5.0351e-69
CP011966.3\|ALB47716.1\|1109910_1110342_+\|aspartate-carbamoyltransferase-regulatory-subunit	gnl\|CDD\|234859	PRK00893, PRK00893, aspartate carbamoyltransferase regulatory subunit; Reviewed.	1.63472e-62
CP011966.3\|ALB47714.1\|1111994_1112867_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234651	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed.	8.40468e-153
CP011966.3\|ALB47708.1\|1118804_1121036_+\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
CP011966.3\|ALB47718.1\|1107896_1108673_+\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.2217e-53
CP011966.3\|ALB47720.1\|1105453_1106347_+\|IS982-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.06852e-96
CP011966.3\|ALB47717.1\|1108982_1109909_+\|aspartate-carbamoyltransferase	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	2.16318e-140
CP011966.3\|ALB47710.1\|1115983_1116745_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|184406	PRK13933, PRK13933, stationary phase survival protein SurE; Provisional.	3.71034e-146
CP011966.3\|ALB47723.1\|1100952_1102773_+\|hypothetical-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	3.86165e-14
CP011966.3\|ALB47709.1\|1116778_1118161_-\|DUF2334-domain-containing-protein	gnl\|CDD\|200549	cd10923, CE4_COG5298, Putative NodB-like catalytic domain of uncharacterized proteins found in bacteria. This family corresponds to a group of uncharacterized bacterial proteins with high sequence similarity to the catalytic domain of the six-stranded barrel rhizobial NodB-like proteins, which remove N-linked or O-linked acetyl groups from cell wall polysaccharides and belong to the larger carbohydrate esterase 4 (CE4) superfamily. Some family members contain an additional copper amine oxidase N-terminal domain.	2.75925e-57
CP011966.3\|ALB47712.1\|1113667_1114564_+\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	1.34861e-175
CP011966.3\|ALB47722.1\|1102841_1103819_+\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	2.70729e-86

>CP011966.3|ALB47716.1|1109910_1110342_+|aspartate-carbamoyltransferase-regulatory-subunit
MLEITSIKNGIVIDHIQAGVGVKIFKYLKLDTNDCSVALIINADSKKLGKKDIIKIENCFELDYTVLGLLSPTITICEVKDEMIINKVTPTLPDKVENIIKCKNPSCITSQEEYVPHSFILVDKENGRYRCEYCDEITKLSEI
>CP011966.3|ALB47717.1|1108982_1109909_+|aspartate-carbamoyltransferase
MIKDIKHLIEPMDFTVEELDEIFNLAHQIIAHPKEFSHICDGKILATLFYEPSTRTRLSFEAAMMRLGGKILGFSEPNSTSISKGETLADTIKMVSIYSDIITMRHPKEGAAKVASIYSNVPIINAGDGGHQHPTQTLADLLTITSLKNGLNNHRIGICGDLKFGRTVHSLIKAMSRYQNNKFVLISPKELAIPQYIREEVLAKNHIEYIEVEKLEDVIESLDILYMTRVQKERFFNEEEYLRLRDSYILDRAKMDLAKDDMIVMHPLPRVNEIAYEVDEDRRASYFKQAEYGMYVRMALMIKLLGVM
>CP011966.3|ALB47718.1|1107896_1108673_+|serine-hydrolase
MKEIKRYLESRIGTYSFFFEDLESGFSYGYNENVQMTSAGCMKLPIAVSIIKHVQEGNSTFLDKIKIEEEDKVYGTGILHEFDNREYTIFELLVAMLIQSDNTAANKLIDIVGIDKINDDIEAQGLKNTKLNRKTSDERAVSNGIENITSALDLSKIWKHLYNSSFLDEKNSKMLMDILQRQQMKNKLALYIPDDLKYEISSKTGDKASVENDTALIHSPKGSFTFTVLSMGIPNSVYGTVTLAKCGKMMWDNIMNNF
>CP011966.3|ALB47719.1|1106704_1107802_+|ATP-dependent-6-phosphofructokinase
MSKDIKKIALLTGGGDCPGLNAVISAVTKSAILNYGYEVIGYKFGYRGLYNNDFISLDLGAVSGLISRGGTILYSSNKDNLFDYSVEENGQIVKKDVSDVAVENLKKEGVDVLVVIGGDGTLTSARDFSRKGVNVIGVPKTIDNDLGSTDVTFGFNTAIGIATEALDRLHTTAESHHRIMILEVMGRNAGFIALESGIAGSADVILLPEIPYDINKVVEKIEDRKKHGKLFTIIVVAEGAKPKNGDVIVSKIVEDSPDPIRLGGIGNKIAEDLEKLVKDREVRCTVLGHIQRGGTTSTYDRILSTRYGVEAIELINKGKFGSMVCLKGNEITYDSLENVIGNNKKVDQDGELVAVAKRIGISFAD
>CP011966.3|ALB47720.1|1105453_1106347_+|IS982-family-transposase
MQNLLVEIFYDVDNFCIGFENYCKSHFLTENSDRKFAMIKSKTLSLSEVMTITIYFHLSNYRTFKSYYIEHVSTVLKPYFPKLVSYNRFVELMQQSLVALLLYMMKFRTGKCTGISFIDSTTLNVCHNRRIHSHKVFKGIAERGKSSTGWFYGFKLHLVVNDKGDILSFYLTPGNVDDREIKTIEILAKDLFGKLFGDKGYLSKKISDILYSKGIQLITKIKKNMKNKLMLMEDKILLRKRAIIETINDQLKNICQIEHNRHRSFTNFAVNIVSGLISYSFLPKKPSLKLDKYLTME
>CP011966.3|ALB47721.1|1104149_1105010_+|undecaprenyl-diphosphate-phosphatase
MGLDILFIIKAIIIAIVEGLTEFIPVSSTGHMILASSIINFKGDFVKMYEVVIQLGAILAVVVLYWKKIKDSVIEFFRYIFTKGKEGKTGFNFGINVIVGCIPMLIIGLLFYKKIKSLFNPEAVVIGFIVGGILLIIIENMFRKSNKHATKSLDSITPMQALKVGVFQVLSVWPGMSRSASTIMGGWIAGLSTPIAAEFSFFLAIPAMIGASAKDLMEFDYSGMNLTSWISLVVGFIVAFVVSVVVMDKFVSYLKKRPMRVFAVYRIGAGIVFGILMFFGFLNFTL
>CP011966.3|ALB47722.1|1102841_1103819_+|class-I-mannose-6-phosphate-isomerase
MYPIKFENLYYERIWGGKHLEKFRNNVPEGVIGESWDIACHKNGTGKVENGELKGKTFDEIINLYGEKLLGTEISTKEFPLLIKLITAEDKLSVQVHPDDEYANKVEKDSGKTEAWYVVDAEENASLIVGTKDCDKEKFKKAIEEGELDKYLNKIPVKRGDFFFVQSGLVHAICEGVLIAEIQQNSDTTYRVYDYNRGREIHVEKALDVIDFSLKGENSKGILIERDGYDKSYLCLDEYFTIQKYKITTSVKETSDEGRFYLFTCVEGNGVIKYSGGEEKMLMGDSIFIPATLGDYELVGNFTVLKSYVPNIENEEKSIMSVIEK
>CP011966.3|ALB47723.1|1100952_1102773_+|hypothetical-protein
MKKSVIEYISDFKNSKYFTYINDLKKSKYFKYISDFKKDRYFTPPVIIVICLSAVMITNVISKSRIESSKDKLTIAANSAEEDFYNDKYDAAIEEYNKYQEQEKDEWPIWNLKIAEIYSVKGDFADSNELLTKVYLARNKIVDGKKQKNIDNFESKDRELTNYIVFTSFMNGDYDKALQYGELFLMDYPTDKSLLKTMFTVYMANDKKDKMKEIIDNYPRDDENASDLADLARMNMMMNNLDEGLLLLKDAWHKDKNEVKVFDVITQIAEYNKNDILNKITALEKKDSGELAYKMWQAEIYSNDKESAEKANNLISELEGKDVGSINLALIKSNTYQNLGESEKARDVINEMIKSDPNSFIGYHAMSLEDYSDENYDDALKNCEKSISLNKDYADNYGFLMPEIMEKQDKSENAEPYFRTALYKEPFNYNILIKLAEYYGNTVKDSSRGLYYYTLASKMNPNDAEVYYNMALIKVANQRQDEAIDLLKKSIAINSKEIKYHRALGTVYLNKEKGDDALKEIRAAYAIDKNDILTLNNAGCYYVAIEGDLSRGLVNFKAAYDGINDKTREEDKDTISENYNRVRNLSDAYNKRNGATLKIPDLKLFY
>CP011966.3|ALB47724.1|1099401_1100499_+|redox-regulated-ATPase-YchF
MKLGMVGLPNVGKSTLFNAITKAGAESANYPFCTIEPNVGVVSVPDKRLDVLEKMYNTKKKVYTAIEFYDIAGLVKGASKGEGLGNKFLSHIREVAAIVHVVRCFDDGNVVHVEGSVDPIRDIETINLELIFSDLEVLERRMEKSIKLARSGDKTAKFEYGVMERIKEHLEANKPVRTLEVTDEEEAFIKSLFLITSKPVLYACNISEDDVMEGNFDNDYVKRVKEYAVSENSEVMVVSAKIEEELSGLDDEEKAEMLGEYGLDESGLDKLIEASYKLLGLMSFLTAGVQEVRAWTIKRGTKAPAAAGKIHSDIERGFIRAEVVSYNDLVECGSEAAAKEKGKFRLEGKDYIMQDGDVVNFRFNV
>CP011966.3|ALB47725.1|1097953_1098841_-|delta-lactam-biosynthetic-de-N-acetylase
MNKSIKSLIALSLVMNLITLVPPKPALAASDNETDSNECFQEDGVFGDILDVDNIRDIFSSFSDEDELNWYYVGKGKDQVAEGPKESVSFLKENSAYYLGDTSKKVLYLTFDEGYENGNTGKILDILKECQVPAAFFVVKPYIDTQPELIKRMVDEGHVVGNHTVHHPSIAQIRDKEKFEAEFTGVENAFKELTGQDMPKFFRPPMGKYSKKSLAMTKDLGYKTIFWSFAYKDWLVNNQPSESYAVEKICKGAHPGSIMLLHAVSNTNTKVLSSVIKTLQKEGYEFKSLNDLPTE
>CP011966.3|ALB47714.1|1111994_1112867_+|orotidine-5'-phosphate-decarboxylase
MTNYIIDKLYNRVEERGVVCVGLDTALSYIPDHIKEGRTDSEAIFEFNKQIIDATWDVSACFKVQIAYYEALGLEGLIAYKKTLDYLRDKGEIIIADIKRGDIAATATMYAKAHFDGDFEADFITLSPYMGMDSIEPYVPYLEKGSKGVFSLVRTSNPGAEDIEYLDTTGDKKVYEVVADKITEMGKKYTGSCGYTAIGGVIGCTHVEEGKKIRLNYSNMFFLIPGYGAQGGKAEDVALYLNNGNGGVVNSSRGILLAYKKENREKEFALCAREEAIKMRDAIREAVKNV
>CP011966.3|ALB47713.1|1112902_1113646_+|dihydroorotate-dehydrogenase-electron-transfer-subunit
MAITYRNAKVVSNKEISKDIYKLVVEDDAEIKAGQFYMLKLNGATFLPRPISICEKSENKLTFLYAVVGNGTKEFTKLKEDDEISLTGPLGNGFDLEKEYNKVALVSGGIGTAPMLELAKKLRKKNPDQKIDLYAGFRDDVYLIDELKEYVNEVYISTNTGKNGHKGFITEILKPEDYDTVLCCGPEIMMKKVIDMCKEKNVAVYVSMEKHMACGVGACLVCTCKTKDGHKRTCKDGPIFDGYYVEL
>CP011966.3|ALB47712.1|1113667_1114564_+|dihydroorotate-dehydrogenase
MMKVTINNVEFKNPVIAASGTFGFGEEFNNFYDVGILGGISSKGLTINPKQGNEGIRVYETPSGMMNSVGLQNPGIDAFIENELPKMRKYGTNVIANIGGGCLEDYEAAVRKIDSSDVDMIELNISCPNVKHGGMAFGIKSKVAYDVVREIKAMTKKPLMVKLSPNAEDIVDMAVKCQEAGADSISLINTLKGMAIDVYKRKPVFNNITAGLSGPAVKPIALRMVYEVAKAVDIPVIGLGGISSGKDAIEFMMAGASAVQIGTINFVNPMAGKEIVEEMESFLKEQGIKDINEIIGII
>CP011966.3|ALB47711.1|1114655_1115330_+|orotate-phosphoribosyltransferase
MKAYKKEFINFMIECGVLTFGDFVTKSGRKTPFFVNTGNYQTGSQLRRLGEFYAEAIKENFADDYDVLFGPAYKGIPLSVTTSIALSSSFDIDVRYCSNRKEVKDHGDTGILLGSKLNDGDKVLIVEDVTTAGTSIYETMPILKSQADVNVKGLIISVDRMERGQGEQSALTEIREKFGFKTCAIVTMAEVIEYLYNKEINGTILITDEVKGRIDEYYKQYGAK
>CP011966.3|ALB47710.1|1115983_1116745_+|5'/3'-nucleotidase-SurE
MNILITNDDGINAPGIIALAKEISKENKVIIVAPKDQKSASSHSISIHSPIKIKEEFIEGLDCKAYSVSGTPADCTQVGLSFLKENIELVISGINKGPNVGTDILYSGTVSAAIEGTIYGIPSIAVSMDVEYGKDNEDYSKAVKWAIKVLNIAKEEYLKSDVVLNLNIPNFNERDIKGIKVCKIGRSTYKTEYILLESNEEGDLYTTKGTRNAIKEEESDVYYLSQGYVTLTPLHFDFTNFAILSDVTKIFEK
>CP011966.3|ALB47709.1|1116778_1118161_-|DUF2334-domain-containing-protein
MQRNAKLSLFSFLAIALSVFILYQVLSYFNFFRKNLTIINKTLYSSMLPEEKFKSTYTPKIKFSDKPVTKVNDVTLNILNTGNLTNVPMLLKAQRYYIPLTFICSKLNYTLDTSNNSISIYNDSNKIFLNETTYEKNSIKGTLRGNLLNNNGSYYISISDIEEIFDLFAVFDFQNKKINLIPNDVKEPEDSAILYSDKIGLIRFEDFGCGYTNVVDKNQTKIKIMANLLFSQGLKFHISWIPRFVVPSANFDNDLLTNDNIVNVGFVDVLDYALNKGGEIGLHGYTHQSGNDSSGTGEEMSKDVNSTEAETRAVIEKGIDTASALNIPISYYESPHYRDTEQQKKIISEYFQFIYEPYDYTKKNIYKPDDSHLFVPTPLGRIADPSTDTTRMVNTINEGDADTLNSFYYHPSIEIDYINFNLNGNKLNVNYDTRSPLQQIVKALKDNDYTTVHIDNLINK
>CP011966.3|ALB47708.1|1118804_1121036_+|formate-C-acetyltransferase
MFKQWDGFKNGTWQESIDVRNFIQKNYKLYEGDSTFLEDKTEKTSKVWARAYELIVEEVKKGIIDVANDRVSGIDNYEPGYIDKDNEVIVGLQTDAPLKRIVNPFGGMRMVQSSLKEYGYELDKNIEEYFPKYRKTHNEGVFDAYTKEIRVARSAGLLTGLPDAYGRGRIIGDYRRVALYGIDYLIEEKKRDLDNLNGDMLDELVRKREEVSMQIRALGEVKSMASKYGIDISKPASNAREAAQHLYFGYLAGIKENNGAATSFGRTSTFLDIYIERDLEAGLITEKEAQEIVDQLIIKLRLVRHLRTPEYNELFGGDPTWVTESIGGVGINGKPLVTKNSFRYLHTLINLGTSAEPNLTVLWSDKLPESFKKYCAEISIKTDSIQYENDEVMRPVYGDDYAIACCVSAMKVGKQMQFFGARANIAKSLLYAINGGVDELKGIKVVPGIEKLTDEEILDFNKVKSNYFKVLEYVAKVYVDTMNIIHFMHDKYAYEAGQMALHDTAVERLMAFGIAGLSVAIDSLSAVKYAKVKPIRNEEGITVDFEVEGDFPKYGNDDDRADDLGVELVTKFSNELKKHPLYRDAKHTLSALTITSNVMYGKKTGTTPDGRKKGEPLAPGANPMHGRDINGALASLNSVAKIPYNEICQDGVSNTFSIVPDALGKDENQKITNLVAILDGYFTQGAHHLNVNVLNRQTLIDAMENPDKYPTLTIRVSGYAVNFSRLSKEQQLEVISRTFHESI
>CP011966.3|ALB47707.1|1121378_1122104_+|pyruvate-formate-lyase-activating-protein
MVKGNVHSIESMGLVDGPGIRVVVFLQGCALRCKYCHNPDTWATNGGEEYTPEQLVNKIERFKTYFASSGGGVTFSGGEPLRQPEFLLETLKLCKSKGINTCIDTAGYGFGDYDEILKYTDLVLFDIKHFTPEGYKNITLMNIDESLKFLEAMKRNNTKMWIRHVVVPGLTDDVEHLKELKKYIDEIPNVEKVELLPYHLLGTNKYEGLGIKYPLENVKAMDKELIKKYQKEIFGDYSYGK
>CP011966.3|ALB47706.1|1122364_1124596_+|formate-C-acetyltransferase
MFKQWEGFKNGTWQEGIDVRNFIQKNYKLYEGDGSFLEEKTERTSKVWDKAYALIVEEVKKGIIDVATDIVSGIDNYDPGYIDRDNEVIVGLQTDAPLKRIVNPFGGMRMVQSSLKEYGYELDPEINKNFSKYRKTHNEGVFDAYTKEIRAARSAGLLTGLPDAYGRGRIIGDYRRVALYGIDYLIEEKKKDLDNLNGDMLDELVRKREEVSMQIRALGEVKSMAAKYGIDISKPASNAKEAAQHLYFGYLAGIKENNGAATSFGRTSTFLDIYIERDLEAGLITEKEAQEIVDQLIIKLRLVRHLRTPEYNELFGGDPTWVTESIGGVGINGKPLVTKNSFRYLHTLINLGTSAEPNLTVLWSDKLPESFKKYCAEISIKTDSIQYENDEVMRPIYGDDYAIACCVSAMKVGKQMQFFGARANIAKSLLYAINGGVDELKGIKVVPGIEKLTDEEILNFDKVKANYFKVLEYVAKVYVDTMNIIHFMHDKYAYEASQMALHDTAVERLMAFGIAGLSVAIDSLSAIKYAKVKPIRNEEGITVDFEVEGDFPKYGNDDDRADDLGVELVTKFSNELKKHPLYRDAKHTLSALTITSNVMYGKKTGTTPDGRKKGEPLAPGANPMHGRDINGALASLNSVAKIPYNEICQDGVSNTFSIVPDALGKNEDQKINNLVAILDGYFTQGAHHLNVNVLNRQTLIDAMENPDKYPTLTIRVSGYAVNFSRLSKEQQLEVISRTFHESI
>CP011966.3|ALB47705.1|1124829_1124991_-|rubredoxin
MKKYVCEVCGYIYDPELGDPDGGIAPHVDFNDLPDYWVCPICAFNKDNFSVLE

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Crispr_ID: CP011966_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011966_2

4837244-4837340

Orphan

Consensus_repeat	Method
CCATACTTGTATGGTAGTTATATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP011966_2

>merge|CP011966|2|4837244-4837340|CRISPRCasFinder
CCATACTTGTATGGTAGTTATATTTATATTTTATCATAAGTATTTTAAAAAATCTATTACTAATCGATACTGCCATACTTGTATGGTAGTTATGTTT

>CP011966|2|2|4837244-4837340|CRISPRCasFinder
CCATACTTGTATGGTAGTTATATTT	ATATTTTATCATAAGTATTTTAAAAAATCTATTACTAATCGATACTG
CCATACTTGTATGGTAGTTATGTTT

Protein	Signature genes	Signature genes Name	Protein_function
CP011966.3\|ALB44752.1\|4843442_4843886_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
CP011966.3\|ALB44760.1\|4830177_4831683_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225121
CP011966.3\|ALB44762.1\|4828025_4828583_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|226472
CP011966.3\|ALB44761.1\|4829470_4829893_-\|HIT-family-protein	unknown	unknown	gnl\|CDD\|223611
CP011966.3\|ALB44756.1\|4836541_4837213_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
CP011966.3\|ALB44749.1\|4846043_4846235_-\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
CP011966.3\|ALB44750.1\|4845648_4845960_-\|hypothetical-protein	unknown	unknown	unknown
CP011966.3\|ALB44763.1\|4825983_4827447_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380478
CP011966.3\|AYK27046.1\|4840575_4842438_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223605
CP011966.3\|ALB44753.1\|4843008_4843305_+\|HNH-endonuclease	unknown	unknown	unknown
CP011966.3\|AYK27047.1\|4846641_4848357_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|376416
CP011966.3\|ALB44748.1\|4848587_4849316_-\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
CP011966.3\|ALB44764.1\|4824203_4825901_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
CP011966.3\|ALB44759.1\|4831721_4833134_-\|glucuronate-isomerase	unknown	unknown	gnl\|CDD\|376859
CP011966.3\|ALB44751.1\|4844491_4845553_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341453
CP011966.3\|ALB44755.1\|4837559_4839239_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
CP011966.3\|ALB44757.1\|4835289_4836351_-\|mannonate-dehydratase	unknown	unknown	gnl\|CDD\|235172
CP011966.3\|ALB44765.1\|4823120_4824038_-\|ribokinase	unknown	unknown	gnl\|CDD\|238579
CP011966.3\|ALB44758.1\|4833562_4835176_-\|mannitol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223324
CP011966.3\|ALB44754.1\|4839320_4840496_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|226618

Protein	Function_ID	Function_description	E-value
CP011966.3\|ALB44749.1\|4846043_4846235_-\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	2.96494e-23
CP011966.3\|ALB44760.1\|4830177_4831683_-\|MFS-transporter	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	5.77788e-95
CP011966.3\|ALB44762.1\|4828025_4828583_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|226472	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism].	4.28401e-52
CP011966.3\|ALB44761.1\|4829470_4829893_-\|HIT-family-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	8.84206e-16
CP011966.3\|ALB44756.1\|4836541_4837213_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.29977e-50
CP011966.3\|ALB44763.1\|4825983_4827447_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380478	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins.	7.39454e-58
CP011966.3\|AYK27046.1\|4840575_4842438_-\|amino-acid-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	1.79173e-27
CP011966.3\|ALB44752.1\|4843442_4843886_-\|N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.76723e-07
CP011966.3\|AYK27047.1\|4846641_4848357_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|376416	pfam00920, ILVD_EDD, Dehydratase family.	0
CP011966.3\|ALB44748.1\|4848587_4849316_-\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	3.89961e-51
CP011966.3\|ALB44764.1\|4824203_4825901_-\|HAMP-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.31582e-42
CP011966.3\|ALB44759.1\|4831721_4833134_-\|glucuronate-isomerase	gnl\|CDD\|376859	pfam02614, UxaC, Glucuronate isomerase. This is a family of Glucuronate isomerases also known as D-glucuronate isomerase, uronic isomerase, uronate isomerase, or uronic acid isomerase, EC:5.3.1.12. This enzyme catalyzes the reactions: D-glucuronate <=> D-fructuronate and D-galacturonate <=> D-tagaturonate. It is not however clear where the experimental evidence for this functional assignment came from and thus this family has no literature reference.	0
CP011966.3\|ALB44751.1\|4844491_4845553_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341453	cd08174, G1PDH-like, Glycerol-1-phosphate dehydrogenase-like. These glycerol-1-phosphate dehydrogenase-like proteins have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH) which plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion.	2.52043e-157
CP011966.3\|ALB44755.1\|4837559_4839239_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	8.13553e-47
CP011966.3\|ALB44757.1\|4835289_4836351_-\|mannonate-dehydratase	gnl\|CDD\|235172	PRK03906, PRK03906, mannonate dehydratase; Provisional.	0
CP011966.3\|ALB44765.1\|4823120_4824038_-\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	6.31533e-124
CP011966.3\|ALB44758.1\|4833562_4835176_-\|mannitol-dehydrogenase-family-protein	gnl\|CDD\|223324	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism].	1.35519e-117
CP011966.3\|ALB44754.1\|4839320_4840496_+\|extracellular-solute-binding-protein	gnl\|CDD\|226618	COG4134, COG4134, ABC-type uncharacterized transport system, periplasmic component [General function prediction only].	2.4168e-45

>CP011966.3|ALB44756.1|4836541_4837213_-|GntR-family-transcriptional-regulator
MALEVNKNTTSKTIYYKLRDEIINLYLEPGTSISEKELSEKYSVSRTPVREALVRLAQEGLVNIYPQKGTVVSLIDLSAVEEGRFLREHLERAVVKEACKEFSQENVLALEMNLKLQKMYIENNDYKKLFEADEEFHKIIFEGSNKKRVWNSINDGSTEFQRIRMLRLVTNSSWDNIYLQHKEIFNAIKNKSPEIAEDFMKEHLNMVTFDKNKIKEKYPNYFK
>CP011966.3|ALB44757.1|4835289_4836351_-|mannonate-dehydratase
MKMGFRWYGEGNDTVTLEQIKQIPGVGGIVWALHDMAAGEEWPMEKILEVKKSADKYGFNMDVVESVNVHEDIKLGLPTRDKYIENYKKTIEKLAKVGVKVICYNFMPVFDWLRTDLFKKAEDGSTALFYEKAKIKDIDPMELVNKIASNPDLTMPGWEPERLKNLSQLFEAYKNVTEEDLWNNLKYFLEQIIPVAEINDIKMAVHPDDPPWPIFGLPRIVKNRDDLARLLKLVDNPYNCLTLCSGAIGSDPNNNVPAMIREFGNRIAFAHIRNVKIYENGDFIETSHRTCDGSLDICDIVKAYHEVGFTGYVRPDHGRHIWNEQCRPGYGLYDRALGIMYLWGIWDSLERNK
>CP011966.3|ALB44758.1|4833562_4835176_-|mannitol-dehydrogenase-family-protein
MNNAKIVLSKESIKNSDLWEKAGIEIPKFDYDKMSASTKENPTWVHFGAGNIFRGFIAILQQELLNTGKAKSGIVAVEGYDYEIIDEIYSPYDNLSLLVIMKPDGSLDKKVVGSIGESLAGDYSREEDWNRLKEIFSNPSLQIASFTITEKGYSVKNLSQQDTTDGLEHPVSIIAKVASLAYVRYQNGQLPIAFVSMDNCSKNGEKLHNAMETMIKNWVENGLVDKGFLEYINDTKKVSFPWSMIDKITPRPSQSVKNTLEAVGFDSTKIVTTSKNTYIAPFVNAEGPQYLVIEDNFPNGRMPLEEAGVFLTNRETVERVETMKVTTCLNPLHTSLAVFGCLLGFDLIADEMKDPALKKLVEKIGYEEGMPVVVNPGILNPEDFIKEVVEVRLPNPYIPDTPQRIASDTSQKVGIRFGETIKAYSKREDLDAKELKYIPLVIAGWCRYLMGLDDNGNVIELSPDPLLDELRKYVADIKLGSKESVESSLKSILINEEIFGVNLYTIGLGEKIEGYFNELISGAGAVRATLEKYLDCK
>CP011966.3|ALB44759.1|4831721_4833134_-|glucuronate-isomerase
MKNFMDENFLLSNQTAIDLYHNYAKNLPIIDYHCHIDPKEIYENKKFSNITEAWLYGDHYKWRAMRSNGIDEKCITGDGSDYDKFLAWSQTIPMAIGNPLYHWTHLELQRFFGIYEPLDEDTAPEIWKRANELLNGEGFNVRDLIIKSNVETICTTDDPIDTLEYHIKIKEDASFNVNVLPTLRPDKGIEINLDGFVSWVKDLEKVSEVSINNYDEFLKALDSRIRFFHSVGCRIADHGIDGVVVYADSSKEEAEAIFAKALEGKSISIDEEKKYKTYTLRHVFKLYHELGWTMQLHIAALRSNNTKMLEKIGVNTGFDSINDESIAYPLSRLLDSVDRENSLPKTILYTLNPKDNYVLGTMIGNFQGDGIPGKMQFGAAWWFNDNKDGMIEQMKALGNLGLLGRFVGMLTDSRSFLSYTRHEYFRRIACNLIGEWVENGEVPKNDKLLKRIVQGICYSNAKEYFGFDEK
>CP011966.3|ALB44760.1|4830177_4831683_-|MFS-transporter
MSNNNRKITIARGVGYGLVDLMGGGAFTIIGAFLLFFYTTFAGLTPIEGASIIAIARIVDAVASLFIGSISDNFYKTKLGKLFGRRRFFLLIGAPLMADYVLLWVTGRSYAFYLVTYLLFEIIAAMVLIPWETLPAEMTKDFTDRTKLSASRMFISATGTFLATFVPGRLIAFFGDKSPQAYFINGLVFAIIYAICILISHKVTWERDLTPEMEQELLNGSTSKSFGEQLMTIVKVAGDYVSTFKIRAFRQHLAIYICSFTAKDLFNSVFIYFCVFNLGVSSTTAANVLSLSIIGIPVTILGGFLMIKVGPGNLYKMAYSIMIVCLLAFYGLYVGNLGSNIVLLFVIGTIYQVGRSLLEFTPWNVFPFIPDVDEMVTRQRREGLFAAVMTFTRKSSVAIATFVIGVVLQESGFVKGQATQSPQVVSTIATLLAVGCISLLVIALICAATFKLNKRTHGILVDEVERLKNNGSKEEVTPETKTIVENLTGYKYENVWKETVV
>CP011966.3|ALB44761.1|4829470_4829893_-|HIT-family-protein
MSNKNNCLYCDKDEKLDNLMIEICKLEVSTLYLFKEQSHKGRCIVAYDKHVKELFELDDKELELYMKDVTRAAAMIKKTFSPDKINYGAYSDTLPHLHFHLVPKYKDGYSWGGVFEMNPQKKYLSDEEYVKRINLIKENL
>CP011966.3|ALB44762.1|4828025_4828583_-|methyltransferase-domain-containing-protein
MWIKFLMEYFKSPRTVGAVAPSSKKLAEKMAHDIDFDHAKCIVEYGPGTGVFTDRLMKKIKDHTMLMLVEYNEEFCRELEEKYGEYNNVVIVNDSAENVDKYLKEYNIKEVDYVVSGLPFASLPKNMSNSILKKTKDILKKNGLFITFQYTLLKKGYIGSYFEDISLERVVLNIPPAYVLKCQNT
>CP011966.3|ALB44763.1|4825983_4827447_-|sugar-ABC-transporter-substrate-binding-protein
MEILNFRLRKLSCIVLIILVGSILSACSQVGKVIVDNEPKEDRQKDYIEEVPTQTVTNEKSVDLAPLYDQVRNLKGQEALDFFESLKSKGLSDSDILEFFINLPLSDANKEITDIYKNEKFETYMSTYPTGKPFGNYKWTNGDGTKIKGAFSELDLKLPFSNYVALKSGPVGDLNKKYRIGVAIHGFDQPWNVSLADAAQWEAERHPNVEVDVKDAQWDNDKMADIIDSFVLQKVDGILTWPMVESETTIAPVKRAIEAGIPVVSVDRMTGLEETTSRVTGNFPANGAQCGMYLIWKLAKEGSLNANVVLLRKPSGSTADANRTGHFLKVLSYFPDIHILKSYHDDDNTAEALANMQLALNEYPSIDVVFGTGDHEAIAAYDASKNANRLNSRKDAKKMMFLSIDDSKKAITSVKDGLFEVNTPYTPLISDIGMRTLLNIITKNGSMPHDIITPNIPMVTKDGDTIFGLKTQTPDQWYEYTFGAPIK
>CP011966.3|ALB44764.1|4824203_4825901_-|HAMP-domain-containing-protein
MKKISSVPGTIPLTIKSKLIISFSLIIFLVSAVGITSYMTMRSYLVQENIMIEKNVMANDIIILINSIPQDISKYILNPTAENKKIIDDKFININKNQEFIKDNVSGEKALKSFDAVSRMLESYSEENIKLFESKNATEMVEKNKLMNRFSKLIQNSMQEYMSVELDQQNKARADLAKKSNFTGVLIIVFIVSIGFFSIIFAIFFSIKLGKSLNKIVLLADDIANGNLQVEEYKVNSNDEVSLLTSSFNEMTKNLRTMIKGIISNSKDLYESSTMIKDRAKESVKAVNQIAVSTQDAVDGSQYQFSEAKRTEEAVNRLIKMNSTIKEKSNNVLSSANKSLKIAEGGNEKVRSMLNQMNTIKEQVMNIQSVTGILKENSSQIETILDTISKITASTELLALNAAIEAARAGEYGKGFAVVSDEIRKLATSSATSTVEISKILTQIQNYINVLIKSMSIAVSEVMSGSEKVLEVEGAFKNIVESNNDVDGEIKNISDEILVMVNEINAIEKISKNICEISNKSLEGSTDISAIVEEQLATQEEFFASATTLANISSELANVVSKFRV
>CP011966.3|ALB44765.1|4823120_4824038_-|ribokinase
MKSLCVIGSLNMDLVTTVENFPVAGQTVMGKAFNTFPGGKGGNQAIALGRLGSDVLMVGKIGEDMYGKRYLEVLRSNNVKSDGVSIEKGMSSGVAVIQVSNNGENNIIVVPGANAEVDINYIESKWSLIERADIFLFQLEIPLETAIATMKKLKKQGKTVILDPAPAVGLPDEIFKYVDYLTPNETELETLIGRKINSEENLVEAAKTLFDKGVRVIVAKLGSDGAAIIKKDKCTRVPGFIVDPIDTTAAGDSFNAGFAFALAKEKELKECVIFGNAVGAISTTALGAQEAMPTFERVDKFIRDR
>CP011966.3|ALB44755.1|4837559_4839239_+|methyl-accepting-chemotaxis-protein
MLKNIKIINSVILMVILSTVVSLSIARIGYNNMKTINSNSSSMYTIALTRIIKTEEIRQTFLNIRLNVNRISISEFNDDDVAAIDNDYSAINKMVEDYENLSLSTIETNNLSEFKKDSSAYYEQIKNLEKGNKLYGIDLEKFNQLGVEMQLFLDNLVTYSSNTANALHNDNMSLYIRSTKIFFITFFIGFILQILVSSSIILVIRKSIKEIMSDLDNVAAGDFSFEINTNLKNEFGRMKKSLKVTISNISSMLEEVQNSANVVNIQATNLLGASDEMSSSAQEINAAVQEVANAATEQSSDLMNVKTSLDSFADSLDQITSSINDVNSNIHNISSMAEDSNSKLEFLFNSIKDVNESFDTVRNKVVQLDNHVEQVNNITTIINSIADQTDLLALNAAIESARAGEVGRGFSVVAEEIRKLAEQSKVSASNISGLITNINNEAQIAVKTTDLGKDSLNNQSVLIEDSIKSFALIFKAINTILPRVDNINKSIENINIEKDLIISKTLNISGVSEENAASSEEIAASVQQINSSFNDVATSAQTLSNLTTSMMNEVSKFKL
>CP011966.3|ALB44754.1|4839320_4840496_+|extracellular-solute-binding-protein
MKNFKFLNVTLVIVLMTTILTGCGSKNVSKSTQPITLNIIDVSGSMQLVGDSIDQFKAANPDLIGDVVVKKSTALEVPSLLKAQILSEDMKTNLIFTGIDGLSTCIDRDVIENIMPTYGSRFPDLESNYSSGAKATYDLVKGYAITYVYSPSGPFFTYNPDTVQNIPKTPDELLAFAKANPGKFTYARPTGSGPGRIFLQGLPYILGDKDPKDPKTWDKTWAYLKELNQYIDYYPAKTGTTFTELKAGKRSIIASQLGWDMNQRIIGGIPQTYQGFVLNNTTLVADAQYMAIPKGLSDEQKNVVLKLMAWLMTPKMQAITYDSGYFYPGPSVKNVSLDMAPKESQDKIKPAIRQSYEDSINTLPNSTQLDTTKFMDALNMWDQLFGTKVKR
>CP011966.3|AYK27046.1|4840575_4842438_-|amino-acid-permease
MLTKFLDVLLGEPLSNEQGCNEKYNIPFGLAIMASDAISSVAYAAQEILFVLIVLGVAAYQWLTWTSFMIIGLLIILTISYIQIIRAYPQGGGAYKVANENIGKKSGLAAGAGLIISYILTVAVSASAGADAIISAFSNLTEYKVMFVLIIIIVLTVLNLRGISESSKIFAIPTYIFIFSMAFMILYGLFKYFILNIHPEPMYSIPANTTENVSIFLILRAFSSGCSALTGVEAVSNSVPNFQEPSQKSAKTVMILLAALIFFIFGGTSVLAIFYTAVPIANGPTVVSQIAFAIFGNGIMYYIIQFSTAVILLMACNTAYTGFPMLMYIVGKDGFAPRQFTIRGKRLSFSFGIVALSCIACILVIIFKADTHRLIPLYAIGVFISFTLGQFGMVNHWRKEKGNGWVKRSIINGIGSVVTLLTTIIILIEKFSEGAFIVAILIPIIIVIQLRIKKHYDKVACGLSISQLNLKKVNLRKKYTHIVIVPIASLNKATIGALQYAQSVSDNVIALNISPDKEAMEKLKSRWSELDTDILLVAKYSPYRAVVTPLLKNIELIANSTAKDEKITVIVPQFVTNERFGEVLHNHTSFFIRETLLKNDNIIVSTYPYHLLDEDVKQSK
>CP011966.3|ALB44753.1|4843008_4843305_+|HNH-endonuclease
MAQNHICELCNRNVSSITKHHLIPLEKGGEKFKTLSLCSTCHRQIHALFTNRELATHYRSLESLKKDIKIVKFLKFIQNIPGDSYLDIKKSRHVRKSC
>CP011966.3|ALB44752.1|4843442_4843886_-|N-acetyltransferase
MNNITYEFINYKSKEFKEVSELRFKILFKPYNKIHKYDYDELDYSSIHLVGLDKGAVVAYSRMTNYNMNGKMTNIVVSEEYVGKGIGIEMLKRHKIKAKEFGVICLYLNARLDTINFYKKAGFQCKGNIFISEKSGLALQPMYFKIN
>CP011966.3|ALB44751.1|4844491_4845553_-|iron-containing-alcohol-dehydrogenase
MKTSTHRIAIPSILEVGKGNINNVGNLIKKAMFKSVLICFGEGLEELFGDSICNSLKEANIDISRIETISDVNFEKISVKAFEISNDVEALIGVGGGKAIDAVKYMSFLRKLPFISIPTSTSNDGFSSAGASLLVNGKRMSLPAKTPYGIIVDIDVIKSAPEKFIYSGIGDLVSNITALYDWKFEEENGRIIIDDFATMISKKAVNSFIRTEFKNIKDDLFLKELVDSLILNGISMEIAGDSSPASGSEHLISHALDKFLEMPQLHGIQVGIATYIMAKVQDHRFERISKILKETNFFEHAKTLKMKKKDYKKAIDIAPSIKPNRYTYIHVDENRILAKKIIDEDEILNYILI
>CP011966.3|ALB44750.1|4845648_4845960_-|hypothetical-protein
MDKVNSLIKNTPIHLTTNTIVLIIVAIIALYILIKAIAGIIRIAALIGVCWFILMSIQSTNLINIPIIREAYTTVEKIIPSKELWTEALDKADKINKVVNDLK
>CP011966.3|ALB44749.1|4846043_4846235_-|PspC-domain-containing-protein
MEKRLYLSATDKKLAGVCGGIAEYFGLDSTLVRIGWAILIVCAGSGLLLYIICALIIPKQPLL
>CP011966.3|AYK27047.1|4846641_4848357_-|dihydroxy-acid-dehydratase
MISQEVRKIAPEMDPLRRGMGWTTEDLSKPQIIVESTFGDSHPGSAHLLKFANRAVEGITQSGGKGARYFATDICDGMSQGHDGINYSLASRDTLTSLIEIHANATPFDGGVFISSCDKAVPSHLMSIGRLNIPAIMVTGGVMEAGPDLLTLEQIGAYSAMCQRGEISEEKLTFYKENACPSCGACSFMGTAATMQVMAEALGLMLPGSSLMPATCEDLEEVALKAGRQAVELAKMNLRPKDIVTIKSFENAILVHAAISGSTNSLLHLPAIAHEFGLYIDEETFDRIHKDAHYLLNIRPAGKWPAQYFYYAGGVPAIMEELKHLLHLDVMTVTGKTLGENLEELKTNGYYEKCNEYLEKVGLKKEDVIRPFNNAIGTNGSVSILKGNIAPEGAVVKHSAVPKEMHEAILKAKPFDSEEEAIDAVLRKIIRPGDAVIIRYEGPKGSGMPEMFYTTEAIASDEELSASIALITDGRFSGASKGPAIGHVSPEAAVGGPIALIEEDDLIEISIPNRVLQIVGIKGKKCSKEEVEKVFEERRKNWKPRKSKYESGILKIFSEHAVSPMKGGYMK
>CP011966.3|ALB44748.1|4848587_4849316_-|FadR-family-transcriptional-regulator
MSDIRELSFNDTNSSTKSLGEQTSERIVRLIIDSDWKSGDKLPNEYDLASSLNVGRSTIREAIKALVSRNVLEIRRGAGTFISDKCGIADDPLGLTFVKDKYKLALDLLEVRFMIEPSIASIAATKATDEEIEQMSNLCDEIESLILKDEPYLEKDIEFHTAIAKSSKNLVVVNLIPIINRSITIFIDITNRKLRNETIETHREILNSIKEHNANGAHDAMLLHLVYNRRNIASIIGKERNY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP011966_3	3.1\|5709667\|33\|CP011966\|CRISPRCasFinder	5709667-5709699	33	MT446421	UNVERIFIED: Escherichia virus TH55, complete genome	42655-42687	6	0.818
CP011966_3	3.1\|5709667\|33\|CP011966\|CRISPRCasFinder	5709667-5709699	33	MT446415	UNVERIFIED: Escherichia virus TH44, complete genome	128912-128944	6	0.818
CP011966_3	3.1\|5709667\|33\|CP011966\|CRISPRCasFinder	5709667-5709699	33	MT446396	UNVERIFIED: Escherichia virus TH22, complete genome	6062-6094	6	0.818
CP011966_3	3.1\|5709667\|33\|CP011966\|CRISPRCasFinder	5709667-5709699	33	MT611523	Escherichia phage DK-13, complete genome	72351-72383	6	0.818
CP011966_3	3.1\|5709667\|33\|CP011966\|CRISPRCasFinder	5709667-5709699	33	AY682195	Lactobacillus plantarum bacteriophage LP65, complete genome	68176-68208	7	0.788
CP011966_3	3.1\|5709667\|33\|CP011966\|CRISPRCasFinder	5709667-5709699	33	NC_006565	Lactobacillus phage LP65, complete genome	68176-68208	7	0.788
CP011966_3	3.1\|5709667\|33\|CP011966\|CRISPRCasFinder	5709667-5709699	33	NZ_CP035169	Lactobacillus plantarum strain SRCM103418 plasmid unnamed1	56140-56172	9	0.727
CP011966_3	3.1\|5709667\|33\|CP011966\|CRISPRCasFinder	5709667-5709699	33	NZ_CP047122	Lactobacillus hilgardii strain FLUB plasmid unnamed1	23285-23317	9	0.727
CP011966_3	3.2\|5709727\|33\|CP011966\|CRISPRCasFinder	5709727-5709759	33	KC821604	Cellulophaga phage phiST, complete genome	48350-48382	11	0.667
CP011966_3	3.2\|5709727\|33\|CP011966\|CRISPRCasFinder	5709727-5709759	33	KC821621	Cellulophaga phage phi19:2, complete genome	48359-48391	11	0.667
CP011966_3	3.2\|5709727\|33\|CP011966\|CRISPRCasFinder	5709727-5709759	33	KC821625	Cellulophaga phage phi13:1, complete genome	46260-46292	11	0.667
CP011966_3	3.2\|5709727\|33\|CP011966\|CRISPRCasFinder	5709727-5709759	33	HQ634192	Cellulophaga phage phiST genomic sequence	30544-30576	11	0.667

1. spacer 3.1|5709667|33|CP011966|CRISPRCasFinder matches to MT446421 (UNVERIFIED: Escherichia virus TH55, complete genome) position: , mismatch: 6, identity: 0.818

gaaagttccattgtcatttaaccaaccagtttg	CRISPR spacer
gaaagttccattttcagttaaccaaccagaagc	Protospacer
************ *** ************

2. spacer 3.1|5709667|33|CP011966|CRISPRCasFinder matches to MT446415 (UNVERIFIED: Escherichia virus TH44, complete genome) position: , mismatch: 6, identity: 0.818

gaaagttccattgtcatttaaccaaccagtttg	CRISPR spacer
gaaagttccattttcagttaaccaaccagaagc	Protospacer
************ *** ************

3. spacer 3.1|5709667|33|CP011966|CRISPRCasFinder matches to MT446396 (UNVERIFIED: Escherichia virus TH22, complete genome) position: , mismatch: 6, identity: 0.818

gaaagttccattgtcatttaaccaaccagtttg	CRISPR spacer
gaaagttccattttcagttaaccaaccagaagc	Protospacer
************ *** ************

4. spacer 3.1|5709667|33|CP011966|CRISPRCasFinder matches to MT611523 (Escherichia phage DK-13, complete genome) position: , mismatch: 6, identity: 0.818

gaaagttccattgtcatttaaccaaccagtttg	CRISPR spacer
gaaagttccattttcagttaaccaaccagaagc	Protospacer
************ *** ************

5. spacer 3.1|5709667|33|CP011966|CRISPRCasFinder matches to AY682195 (Lactobacillus plantarum bacteriophage LP65, complete genome) position: , mismatch: 7, identity: 0.788

gaaagttccattgtcatttaaccaaccagtttg	CRISPR spacer
gtacgtttcattgtcatttatccaaccattatc	Protospacer
* * ***.************ ******* * *

6. spacer 3.1|5709667|33|CP011966|CRISPRCasFinder matches to NC_006565 (Lactobacillus phage LP65, complete genome) position: , mismatch: 7, identity: 0.788

gaaagttccattgtcatttaaccaaccagtttg	CRISPR spacer
gtacgtttcattgtcatttatccaaccattatc	Protospacer
* * ***.************ ******* * *

7. spacer 3.1|5709667|33|CP011966|CRISPRCasFinder matches to NZ_CP035169 (Lactobacillus plantarum strain SRCM103418 plasmid unnamed1) position: , mismatch: 9, identity: 0.727

gaaagttccattgtcatttaaccaaccagtttg	CRISPR spacer
ttaagttccattgtcttttaacgaaccaaggct	Protospacer
  ************* ****** *****.  .

8. spacer 3.1|5709667|33|CP011966|CRISPRCasFinder matches to NZ_CP047122 (Lactobacillus hilgardii strain FLUB plasmid unnamed1) position: , mismatch: 9, identity: 0.727

gaaagttccattgtcatttaaccaaccagtttg	CRISPR spacer
ttaagttccattgtcttttaacgaaccaaggct	Protospacer
  ************* ****** *****.  .

9. spacer 3.2|5709727|33|CP011966|CRISPRCasFinder matches to KC821604 (Cellulophaga phage phiST, complete genome) position: , mismatch: 11, identity: 0.667

ccaagttgctccatcttgaacccaacctgtagc	CRISPR spacer
gttagttgctccatctgaaacccaaccaaattt	Protospacer
 . ************* .********* .   .

10. spacer 3.2|5709727|33|CP011966|CRISPRCasFinder matches to KC821621 (Cellulophaga phage phi19:2, complete genome) position: , mismatch: 11, identity: 0.667

ccaagttgctccatcttgaacccaacctgtagc	CRISPR spacer
gttagttgctccatctgaaacccaaccaaattt	Protospacer
 . ************* .********* .   .

11. spacer 3.2|5709727|33|CP011966|CRISPRCasFinder matches to KC821625 (Cellulophaga phage phi13:1, complete genome) position: , mismatch: 11, identity: 0.667

ccaagttgctccatcttgaacccaacctgtagc	CRISPR spacer
gttagttgctccatctgaaacccaaccaaattt	Protospacer
 . ************* .********* .   .

12. spacer 3.2|5709727|33|CP011966|CRISPRCasFinder matches to HQ634192 (Cellulophaga phage phiST genomic sequence) position: , mismatch: 11, identity: 0.667

ccaagttgctccatcttgaacccaacctgtagc	CRISPR spacer
gttagttgctccatctgaaacccaaccaaattt	Protospacer
 . ************* .********* .   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

422062 : 484933

Clostridium_phage(13.33%)

coat,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ALB48259.1\|422062_423079_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
ALB48258.3\|423080_423887_+\|coat	spore coat protein	NA	NA	NA	NA
ALB48257.1\|423942_424998_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
ALB48256.1\|425317_426439_-	glycosyltransferase family 1 protein	A0A1X9SJR9	Sulfolobus_islandicus_rod-shaped_virus	1.4e-05	27.9
ALB48255.1\|426547_427546_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
ALB48254.1\|427708_428569_+	sporulation peptidase YabG	NA	NA	NA	NA
ALB48253.1\|428807_429347_+	glutathione peroxidase	NA	NA	NA	NA
ALB48252.1\|429962_430205_+	hypothetical protein	NA	NA	NA	NA
ALB48251.1\|430668_432231_+	DUF3794 domain-containing protein	S6BFI4	Thermus_phage	2.0e-05	59.5
ALB48250.1\|432350_432554_+	hypothetical protein	NA	NA	NA	NA
ALB48249.1\|432560_433406_+	cyanophycinase	NA	NA	NA	NA
ALB48248.1\|433377_436020_+	cyanophycin synthetase	NA	NA	NA	NA
ALB48247.1\|436168_437011_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA
ALB48246.1\|437074_437812_+	stage II sporulation protein R	NA	NA	NA	NA
ALB48245.1\|437943_438360_+	DUF1934 domain-containing protein	NA	NA	NA	NA
ALB48244.1\|438465_438774_+	hypothetical protein	NA	NA	NA	NA
ALB48243.1\|438938_440549_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.5e-149	51.0
ALB48242.1\|440857_442300_+	transcription termination factor Rho	NA	NA	NA	NA
ALB48241.1\|442341_443448_-	UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase	NA	NA	NA	NA
ALB48240.1\|443661_443871_-	50S ribosomal protein L31	NA	NA	NA	NA
ALB48239.1\|444060_444645_+	thymidine kinase	A0A249XXF6	Clostridium_phage	6.7e-55	55.3
ALB48238.1\|444670_446431_+	peptide chain release factor N(5)-glutamine methyltransferase	A0A0K2CP67	Brevibacillus_phage	1.2e-06	28.1
ALB48237.1\|446566_447649_+	peptide chain release factor 1	NA	NA	NA	NA
ALB48236.1\|447714_448302_+	hypothetical protein	NA	NA	NA	NA
ALB48235.1\|448357_449407_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	3.3e-44	35.4
ALB48234.1\|449457_449907_+	ribose 5-phosphate isomerase B	NA	NA	NA	NA
ALB48233.1\|450097_450727_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
ALB48232.1\|450808_451303_+	cytidine deaminase	A0A2H5BMD7	Streptomyces_phage	3.0e-16	39.4
ALB48231.2\|451582_452731_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	2.0e-26	27.0
ALB48230.1\|452852_454034_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
ALB48229.1\|454754_455120_+	hypothetical protein	NA	NA	NA	NA
ALB48228.2\|455112_455802_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
ALB48227.1\|455856_456072_+	ATP synthase F0 subunit C	NA	NA	NA	NA
ALB48226.1\|456124_456604_+	ATP synthase subunit B	NA	NA	NA	NA
ALB48225.1\|456606_457146_+	ATP synthase subunit delta	NA	NA	NA	NA
ALB48224.1\|457156_458671_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
ALB48223.1\|458712_459564_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
ALB48222.1\|459578_460970_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
ALB48221.1\|460985_461393_+	ATP synthase F1 subunit epsilon	NA	NA	NA	NA
ALB48220.1\|461607_462258_+	hypothetical protein	NA	NA	NA	NA
ALB48219.1\|462419_463682_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
ALB48218.1\|464248_465307_+	stage II sporulation protein D	Q2XU88	Pseudomonas_phage	3.0e-37	35.1
ALB48217.2\|465732_466485_+	M23 family metallopeptidase	NA	NA	NA	NA
ALB48216.1\|466592_466847_+	sporulation transcriptional regulator SpoIIID	M9Q261	Clostridium_phage	5.7e-19	56.4
ALB48215.1\|466926_467961_+	rod shape-determining protein	NA	NA	NA	NA
ALB48214.1\|468028_468565_-\|protease	spore protease YyaC	NA	NA	NA	NA
ALB48213.1\|468665_469070_+	hypothetical protein	NA	NA	NA	NA
ALB48212.1\|470336_471512_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.6e-151	67.6
ALB48211.1\|471963_474192_+	ATP-dependent RecD-like DNA helicase	A0A0K2FLP8	Brevibacillus_phage	3.2e-65	30.4
ALB48210.1\|474210_475227_+	hypothetical protein	NA	NA	NA	NA
ALB48209.1\|475199_475856_+	ComF family protein	NA	NA	NA	NA
ALB48208.1\|476271_476805_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
ALB48207.1\|477149_479708_+	preprotein translocase subunit SecA	NA	NA	NA	NA
ALB48206.2\|479878_480976_+	peptide chain release factor 2	W8EDB3	Pseudomonas_phage	2.4e-05	41.5
ALB48205.1\|481111_481444_-	hypothetical protein	NA	NA	NA	NA
ALB48204.1\|481638_482334_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	3.8e-41	40.5
ALB48203.1\|482323_483823_+	sensor histidine kinase	W8CYF6	Bacillus_phage	8.6e-30	26.5
ALB48785.2\|484021_484933_+\|protease	site-2 protease family protein	NA	NA	NA	NA

DBSCAN-SWA_2

1002601 : 1016069

Clostridium_phage(60.0%)

integrase

attL 1004159:1004174|attR 1013261:1013276

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ALB47805.1\|1002601_1003504_-	NAD-dependent DNA ligase	M1PFD8	Streptococcus_phage	1.2e-05	37.5
ALB47804.1\|1003594_1003936_-	XRE family transcriptional regulator	A0A1L2BY72	Clostridium_phage	6.9e-28	60.0
ALB47803.1\|1004111_1004303_+	XRE family transcriptional regulator	NA	NA	NA	NA
1004159:1004174	attL	NA	NA	NA	NA
ALB47802.1\|1004353_1004785_+	XRE family transcriptional regulator	A0A1L2BY71	Clostridium_phage	1.2e-64	88.1
ALB48774.2\|1005041_1005341_+	hypothetical protein	A0A1L2BY79	Clostridium_phage	2.0e-23	81.0
ALB47801.1\|1005431_1005614_+	hypothetical protein	A0A1L2BY78	Clostridium_phage	3.3e-21	86.4
ALB47800.1\|1005661_1006474_+	helix-turn-helix domain-containing protein	A0A1L2BY83	Clostridium_phage	8.1e-67	50.4
ALB47799.1\|1006466_1007246_+	hypothetical protein	A0A1L2BY85	Clostridium_phage	8.0e-72	55.6
ALB47798.1\|1007517_1007841_-	hypothetical protein	NA	NA	NA	NA
ALB47797.1\|1007863_1008181_-	hypothetical protein	NA	NA	NA	NA
ALB47796.1\|1008203_1008521_-	hypothetical protein	NA	NA	NA	NA
ALB48773.1\|1008991_1009315_-	hypothetical protein	NA	NA	NA	NA
ALB47795.1\|1009683_1010076_+	RNA polymerase subunit sigma	A0A1L2BY86	Clostridium_phage	1.5e-55	89.2
ALB47794.1\|1010313_1010496_+	hypothetical protein	A0A1L2BY88	Clostridium_phage	2.0e-18	67.2
ALB47793.1\|1010511_1011117_+\|integrase	integrase	A0A1L2BY87	Clostridium_phage	7.6e-102	92.0
ALB47792.1\|1011404_1011617_+	hypothetical protein	NA	NA	NA	NA
ALB47791.1\|1011613_1011841_+	hypothetical protein	NA	NA	NA	NA
ALB47790.1\|1011827_1012250_+	hypothetical protein	NA	NA	NA	NA
AYK26973.1\|1012324_1012504_-	hypothetical protein	A0A0C5AEA5	Paenibacillus_phage	1.9e-13	57.6
ALB47789.1\|1012687_1014169_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.7e-110	48.1
1013261:1013276	attR	NA	NA	NA	NA
AYK26974.1\|1014694_1015309_-	hypothetical protein	A0A0C5AEA5	Paenibacillus_phage	8.1e-27	49.0
AYK26975.1\|1015410_1015569_-	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	6.9e-07	60.0
AQS18257.1\|1015853_1016069_+	hypothetical protein	S6B9W8	Thermus_phage	8.0e-06	59.5

DBSCAN-SWA_3

1171266 : 1181493

Cyanophage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ALB47663.1\|1171266_1175013_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	5.7e-30	24.8
ALB47662.1\|1175442_1175922_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	5.9e-25	42.4
ALB47661.1\|1175921_1176629_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	3.1e-46	43.8
ALB47660.1\|1176884_1178300_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.0e-56	33.5
ALB47659.1\|1178370_1179372_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SQF5	Cyanophage	6.5e-66	45.5
ALB47658.1\|1179359_1179971_+	phosphoribosylglycinamide formyltransferase	R9S626	Prochlorococcus_phage	1.0e-21	36.2
ALB47657.1\|1179984_1181493_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	E3SNU8	Prochlorococcus_phage	4.0e-35	45.0

DBSCAN-SWA_4

1215150 : 1226668

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ALB47629.1\|1215150_1216497_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	3.2e-92	42.5
ALB47628.1\|1216514_1217723_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
ALB47627.1\|1217839_1218706_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
ALB47626.1\|1218718_1219657_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	8.4e-100	61.5
ALB47625.1\|1219643_1220225_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.8e-53	55.1
ALB47624.1\|1220304_1221213_+	dTDP-4-dehydrorhamnose reductase	H9NCE8	Sphingomonas_phage	9.9e-13	28.6
ALB48768.1\|1221212_1222262_+	dTDP-glucose 4,6-dehydratase	A0A1D8EQC0	Escherichia_phage	9.1e-79	47.1
ALB47623.1\|1222293_1223145_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	9.9e-15	38.1
ALB47622.1\|1223172_1224354_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
ALB47621.2\|1224365_1225622_+	hypothetical protein	NA	NA	NA	NA
AQS18259.1\|1225645_1226668_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.2e-12	34.4

DBSCAN-SWA_5

1656733 : 1715093

Staphylococcus_prophage(20.0%)

transposase,coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ALB48757.2\|1656733_1658305_+\|transposase	IS1182 family transposase	Q9MBP7	Staphylococcus_prophage	1.6e-63	33.5
ALB47255.1\|1659366_1660581_+	cell wall-binding protein	NA	NA	NA	NA
ALB47254.1\|1661150_1662989_+	peptidase S8 and S53 subtilisin kexin sedolisin	NA	NA	NA	NA
AQS18265.1\|1663226_1663391_+	DUF3787 domain-containing protein	NA	NA	NA	NA
ALB47253.1\|1663704_1667223_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
ALB47252.1\|1667441_1668335_+\|transposase	IS982 family transposase	NA	NA	NA	NA
AQS18354.1\|1668712_1668790_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA
ALB47251.1\|1668822_1670502_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
AYK26980.1\|1670536_1672600_+	K(+)-transporting ATPase subunit B	E4ZFI9	Streptococcus_phage	2.8e-39	27.3
ALB47250.1\|1672666_1673293_+	K(+)-transporting ATPase subunit C	NA	NA	NA	NA
ALB47249.1\|1673340_1673676_+	hypothetical protein	NA	NA	NA	NA
ALB48756.2\|1673822_1676534_+	sensor histidine kinase KdpD	A0A1V0SGX0	Hokovirus	2.4e-14	31.0
ALB47248.1\|1676526_1677225_+	response regulator	NA	NA	NA	NA
ALB47247.1\|1677273_1677852_-	hypothetical protein	NA	NA	NA	NA
ALB47246.1\|1679025_1679517_+	hypothetical protein	NA	NA	NA	NA
ALB47245.1\|1680191_1680794_+	hypothetical protein	NA	NA	NA	NA
ALB47244.1\|1680954_1682901_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
ALB47243.1\|1683142_1684225_+	2,3-butanediol dehydrogenase	NA	NA	NA	NA
ALB47242.1\|1684375_1685266_+	sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein	NA	NA	NA	NA
ALB47241.1\|1685265_1686660_+	NADPH-dependent glutamate synthase	NA	NA	NA	NA
ALB47240.1\|1686878_1687661_+	HD domain-containing protein	NA	NA	NA	NA
ALB47239.1\|1688055_1688925_+	cation transporter	NA	NA	NA	NA
ALB47238.1\|1689092_1689545_+	hypothetical protein	A0A2C9CXS1	Yersinia_phage	4.4e-06	27.2
ALB47237.1\|1690306_1690615_+	transcriptional regulator	NA	NA	NA	NA
ALB47236.1\|1690948_1691548_+	nitroreductase family protein	NA	NA	NA	NA
ALB47235.1\|1692715_1694074_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
ALB47234.1\|1694546_1695290_-	DNA-binding response regulator	NA	NA	NA	NA
ALB47233.1\|1695307_1695709_-	hypothetical protein	NA	NA	NA	NA
ALB47232.1\|1695730_1696717_-	UPF0365 family protein	NA	NA	NA	NA
ALB47231.1\|1696743_1697241_-\|protease	serine protease	NA	NA	NA	NA
ALB47230.1\|1697389_1698241_-	GHKL domain-containing protein	NA	NA	NA	NA
ALB47229.1\|1698798_1700037_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
ALB47228.2\|1700412_1701369_-	DMT family transporter	NA	NA	NA	NA
ALB47227.1\|1703073_1703766_+	hypothetical protein	NA	NA	NA	NA
ALB47226.1\|1703791_1704793_+	GGGtGRT protein	NA	NA	NA	NA
ALB47225.1\|1704942_1705140_+	hypothetical protein	NA	NA	NA	NA
ALB47224.1\|1705213_1705501_+	recombinase XerD	A0A142F1N9	Bacillus_phage	7.4e-07	42.4
AQS18266.1\|1705974_1706187_-	hypothetical protein	NA	NA	NA	NA
AYK26981.1\|1706697_1707540_-\|transposase	IS4 family transposase	NA	NA	NA	NA
AYK26982.1\|1707469_1707790_-	hypothetical protein	NA	NA	NA	NA
ALB47223.1\|1708555_1708888_+	TfoX family protein	NA	NA	NA	NA
ALB47222.1\|1708902_1709319_+	hypothetical protein	NA	NA	NA	NA
ALB47221.1\|1709318_1709693_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
ALB47220.1\|1709923_1710454_+	PadR family transcriptional regulator	NA	NA	NA	NA
ALB47219.1\|1710804_1711125_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
ALB47218.1\|1711934_1712138_+	hypothetical protein	NA	NA	NA	NA
ALB47217.1\|1712475_1714185_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
ALB47216.1\|1714465_1714675_+\|coat	spore coat protein	NA	NA	NA	NA
ALB47215.1\|1714730_1715093_+\|coat	spore coat protein	NA	NA	NA	NA

DBSCAN-SWA_6

1926553 : 1989165

Klosneuvirus(16.67%)

tRNA,transposase,holin,integrase

attL 1945461:1945480|attR 1999007:1999026

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ALB47024.1\|1926553_1926931_+\|holin	phage holin family protein	NA	NA	NA	NA
ALB47023.1\|1927067_1927448_+	VOC family protein	NA	NA	NA	NA
AYK26986.1\|1927488_1928679_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
AYK26987.1\|1929682_1932328_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.4e-170	42.4
AQS18268.1\|1932601_1933453_+	TerC/Alx family metal homeostasis membrane protein	A0A291LBC5	Escherichia_phage	1.5e-31	31.3
ALB47022.1\|1933669_1934983_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
ALB47021.1\|1935085_1937065_+	DNA-binding protein	NA	NA	NA	NA
ALB47020.1\|1937188_1937446_-	TIGR03905 family TSCPD domain-containing protein	NA	NA	NA	NA
ALB47019.2\|1937588_1938551_+	YncE family protein	NA	NA	NA	NA
ALB47018.1\|1938794_1939319_-	DUF4364 family protein	NA	NA	NA	NA
ALB47017.1\|1939486_1940248_+	deacetylase	NA	NA	NA	NA
ALB47016.1\|1940353_1941004_+	single-stranded DNA-binding protein	A0A2H4J8K3	uncultured_Caudovirales_phage	2.7e-49	50.0
ALB47015.1\|1941230_1941941_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA	NA	NA	NA
ALB47014.1\|1942096_1943242_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
ALB47013.1\|1943326_1943644_+	pyrimidine/purine nucleoside phosphorylase	NA	NA	NA	NA
ALB47012.1\|1943951_1944260_+	DNA methyltransferase	NA	NA	NA	NA
ALB47011.1\|1944494_1945250_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
ALB47010.1\|1945259_1946138_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
1945461:1945480	attL	NA	NA	NA	NA
ALB47009.1\|1946167_1947160_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
ALB47008.1\|1947602_1947821_+	small, acid-soluble spore protein, alpha/beta type	NA	NA	NA	NA
ALB47007.1\|1947922_1948660_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
ALB47006.1\|1948686_1949568_+	redox-regulated molecular chaperone Hsp33	NA	NA	NA	NA
ALB47005.1\|1949708_1950464_+	YdcF family protein	NA	NA	NA	NA
ALB47004.1\|1950512_1951358_+	pseudouridine synthase	NA	NA	NA	NA
ALB47003.1\|1951575_1951905_+	hypothetical protein	NA	NA	NA	NA
ALB47002.1\|1951901_1953347_+	sensor histidine kinase	NA	NA	NA	NA
ALB47001.1\|1953388_1954087_+	DNA-binding response regulator	NA	NA	NA	NA
ALB47000.1\|1954407_1955652_+	TolC family protein	NA	NA	NA	NA
ALB46999.1\|1955654_1957130_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
ALB46998.1\|1957143_1957881_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-34	38.8
ALB46997.1\|1957871_1959365_+	FtsX-like permease family protein	NA	NA	NA	NA
ALB46996.1\|1959458_1960082_-	hypothetical protein	NA	NA	NA	NA
ALB46995.1\|1960467_1961094_-	DedA family protein	NA	NA	NA	NA
ALB46994.1\|1961323_1962388_+	histidinol-phosphate transaminase	NA	NA	NA	NA
ALB46993.1\|1963574_1964882_+\|integrase	site-specific integrase	NA	NA	NA	NA
ALB48749.2\|1964920_1967728_+	hypothetical protein	NA	NA	NA	NA
ALB46992.1\|1967738_1969424_+\|integrase	site-specific integrase	NA	NA	NA	NA
ALB46991.1\|1969426_1970203_+	hypothetical protein	NA	NA	NA	NA
ALB46990.1\|1970693_1971023_+	hypothetical protein	NA	NA	NA	NA
ALB46989.1\|1971009_1971360_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
AYK26988.1\|1971594_1973070_+\|transposase	IS66 family transposase	S5VLC8	Leptospira_phage	2.7e-36	32.6
ALB46988.1\|1973309_1973723_+	hypothetical protein	NA	NA	NA	NA
ALB46987.1\|1974672_1975035_+	ArsR family transcriptional regulator	NA	NA	NA	NA
ALB46986.1\|1975062_1976079_+	permease	NA	NA	NA	NA
ALB46985.1\|1976156_1976384_+	thioredoxin family protein	NA	NA	NA	NA
ALB46984.1\|1976569_1977739_+	MFS transporter	NA	NA	NA	NA
ALB46983.1\|1977765_1978251_+	permease	NA	NA	NA	NA
ALB46982.1\|1978247_1978781_+	permease	NA	NA	NA	NA
ALB46981.1\|1978970_1979231_+	4Fe-4S ferredoxin	NA	NA	NA	NA
ALB46980.1\|1979353_1979908_+	thioredoxin	NA	NA	NA	NA
ALB46979.1\|1979904_1980597_+	cytochrome C biogenesis protein CcdA	NA	NA	NA	NA
ALB46978.1\|1980958_1981282_+	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	1.8e-17	44.2
ALB46977.1\|1981324_1981741_+	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA
ALB46976.1\|1981878_1982772_+\|transposase	IS982 family transposase	NA	NA	NA	NA
ALB46975.1\|1982895_1984644_+	arsenical pump-driving ATPase	NA	NA	NA	NA
ALB46974.1\|1984747_1986385_+	dehydrogenase	NA	NA	NA	NA
ALB46973.1\|1986427_1987489_+	arsenical-resistance protein	NA	NA	NA	NA
ALB46972.1\|1987742_1987955_+	hypothetical protein	NA	NA	NA	NA
AQS18270.1\|1988112_1989165_+\|transposase	transposase	NA	NA	NA	NA
1999007:1999026	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2493362 : 2497845

Clostridium_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ALB46581.1\|2493362_2493722_-	XRE family transcriptional regulator	B6SBW8	Clostridium_virus	1.0e-13	40.4
ALB46580.1\|2494040_2494238_+	DUF739 family protein	A0A0A7RTP5	Clostridium_phage	1.2e-08	53.3
ALB46579.1\|2494727_2496089_+	phage replisome organizer	A8ASN4	Listeria_phage	1.1e-28	51.7
ALB48733.1\|2496138_2496765_+	AAA family ATPase	A0A0K2CPA5	Brevibacillus_phage	3.6e-30	39.5
ALB46578.1\|2496878_2497121_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	2.7e-10	48.6
ALB46577.1\|2497536_2497845_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	7.4e-13	44.9

DBSCAN-SWA_8

2553798 : 2560519

Clostridium_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ALB46533.1\|2553798_2554158_-	XRE family transcriptional regulator	B6SBW8	Clostridium_virus	2.3e-13	40.4
ALB46532.1\|2554616_2554814_+	DUF739 family protein	A0A0A7RTP5	Clostridium_phage	2.7e-08	51.7
ALB46531.1\|2554932_2555193_+	excisionase	NA	NA	NA	NA
ALB46530.1\|2555420_2556770_+	phage replisome organizer	Q7Y4K5	Streptococcus_phage	8.8e-26	51.8
ALB46529.1\|2556819_2557446_+	AAA family ATPase	Q0H276	Geobacillus_phage	1.4e-29	41.9
ALB46528.1\|2557560_2557803_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	5.8e-13	52.7
ALB46527.1\|2557804_2558197_+	hypothetical protein	NA	NA	NA	NA
ALB46526.1\|2558275_2559031_+	phage antirepressor Ant	A0A2R2ZGJ4	Clostridioides_phage	7.9e-40	39.4
ALB46525.1\|2559109_2559328_-	DUF2922 domain-containing protein	NA	NA	NA	NA
ALB46524.1\|2559443_2559668_-	DUF1659 domain-containing protein	NA	NA	NA	NA
AQS18280.1\|2559802_2560228_+	hypothetical protein	A0A1L2BY85	Clostridium_phage	1.7e-31	55.1
AQS18281.1\|2560309_2560519_+	hypothetical protein	A0A1L2BY85	Clostridium_phage	3.8e-13	55.4

DBSCAN-SWA_9

2921059 : 2953993

uncultured_Caudovirales_phage(42.86%)

terminase,portal,plate,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AQS18284.1\|2921059_2921686_+	recombinase	A0A1S5SFL0	Streptococcus_phage	2.1e-14	30.3
ALB46232.1\|2922098_2922815_+	hypothetical protein	NA	NA	NA	NA
ALB46231.1\|2922990_2923683_+	recombinase family protein	H2A0H0	Bacteroides_phage	6.8e-06	23.9
ALB46230.1\|2923790_2923988_+	type II toxin-antitoxin system HicA family toxin	A0A1L2JY37	Aeribacillus_phage	1.1e-14	53.2
ALB46229.1\|2924042_2924447_+	HicB family protein	A0A090DBV2	Clostridium_phage	8.7e-46	66.7
ALB46228.1\|2924540_2925314_+	hypothetical protein	A0A1L2BWH4	Clostridium_phage	4.4e-38	47.1
ALB46227.1\|2925313_2926648_+\|terminase	PBSX family phage terminase large subunit	A0A2P1JTW5	Anoxybacillus_phage	1.5e-147	67.1
ALB46226.1\|2926789_2928331_+\|portal	phage portal protein	A0A0A7RW62	Clostridium_phage	3.2e-173	62.9
AYK27005.1\|2928330_2930175_+	hypothetical protein	A0A2H4J048	uncultured_Caudovirales_phage	2.4e-58	33.2
ALB46225.1\|2930176_2930374_+	hypothetical protein	NA	NA	NA	NA
ALB46224.1\|2930617_2931271_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	6.9e-08	33.3
ALB46223.1\|2931949_2932198_+	DNA-binding protein	NA	NA	NA	NA
AQS18286.1\|2932225_2932621_+	hypothetical protein	NA	NA	NA	NA
ALB46222.1\|2932663_2933284_+	phage scaffold protein	A0A0A7RW68	Clostridium_phage	2.1e-43	51.0
ALB46221.1\|2933304_2933661_+	hypothetical protein	A0A2H4J872	uncultured_Caudovirales_phage	1.6e-27	52.9
ALB46220.1\|2933679_2934708_+\|capsid	major capsid protein	A0A1J1GG50	Clostridium_phage	9.7e-158	80.4
ALB46219.1\|2934763_2935009_+	hypothetical protein	NA	NA	NA	NA
ALB48722.1\|2935020_2935341_+	hypothetical protein	A0A2H4J040	uncultured_Caudovirales_phage	2.4e-30	62.7
ALB46218.1\|2935337_2935727_+	hypothetical protein	A0A2H4J057	uncultured_Caudovirales_phage	2.5e-26	47.7
ALB46217.1\|2935727_2936153_+	hypothetical protein	A0A2H4J736	uncultured_Caudovirales_phage	2.3e-20	39.9
ALB46216.1\|2936155_2936983_+	hypothetical protein	A0A2H4J4Q0	uncultured_Caudovirales_phage	1.2e-94	61.1
AQS18355.1\|2937088_2937268_+	hypothetical protein	A0A0A8WEX5	Clostridium_phage	2.0e-10	61.1
ALB46214.2\|2937267_2938683_+\|tail	phage tail sheath protein	A0A2H4J1N7	uncultured_Caudovirales_phage	8.4e-144	54.1
ALB46213.1\|2938698_2939109_+\|portal	phage portal protein	A0A2H4J032	uncultured_Caudovirales_phage	6.8e-46	64.4
ALB46212.1\|2939172_2939604_+	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	2.5e-27	47.1
AQS18287.2\|2940244_2943919_+\|tail	phage tail tape measure protein	D9ZNE6	Clostridium_phage	5.3e-97	52.7
AYK27006.1\|2943961_2944618_+	hypothetical protein	NA	NA	NA	NA
ALB46209.1\|2944692_2945382_+	SH3 domain-containing protein	A0A2H4J045	uncultured_Caudovirales_phage	2.2e-57	51.8
ALB46208.1\|2945392_2946367_+	XkdQ	A0A2H4J063	uncultured_Caudovirales_phage	1.7e-79	48.6
ALB46207.1\|2946356_2946692_+	hypothetical protein	A0A0A8WFG6	Clostridium_phage	4.7e-13	40.4
ALB46206.1\|2946684_2947122_+	DUF2634 domain-containing protein	A0A2H4J4Q8	uncultured_Caudovirales_phage	3.7e-26	50.0
ALB46205.2\|2947137_2948259_+\|plate	baseplate J/gp47 family protein	A0A0A8WEY6	Clostridium_phage	3.1e-101	52.4
AQS18288.1\|2948255_2949953_+	DUF2313 domain-containing protein	J9QE20	Clostridium_phage	1.0e-31	42.9
ALB46204.1\|2949949_2950243_+	hypothetical protein	NA	NA	NA	NA
ALB46203.1\|2950246_2953993_+	hypothetical protein	G3MAG1	Bacillus_virus	3.2e-33	30.2

DBSCAN-SWA_10

3200306 : 3253897

uncultured_Caudovirales_phage(20.0%)

transposase,integrase,protease

attL 3192431:3192456|attR 3247493:3247518

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3192431:3192456	attL	NA	NA	NA	NA
ALB46025.1\|3200306_3201434_+\|transposase	transposase	NA	NA	NA	NA
ALB46024.1\|3201426_3203397_+\|integrase	integrase	A0A2H4J2U1	uncultured_Caudovirales_phage	9.6e-05	25.1
ALB46023.1\|3203399_3203774_+\|transposase	transposase	NA	NA	NA	NA
ALB46022.1\|3203879_3204623_+	NADPH-dependent oxidoreductase	NA	NA	NA	NA
ALB46021.1\|3205052_3205232_+	hypothetical protein	NA	NA	NA	NA
ALB46020.1\|3205453_3206899_-	DEAD/DEAH box helicase	A0A1V0SBR7	Catovirus	1.0e-56	33.2
ALB46019.1\|3207126_3207996_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
ALB46018.1\|3208050_3209442_-	MATE family efflux transporter	NA	NA	NA	NA
ALB46017.1\|3209804_3210116_-\|protease	aspartyl protease	A0A0A8WIU2	Clostridium_phage	1.6e-07	41.7
ALB46016.1\|3211005_3212577_-	PAS domain S-box protein	NA	NA	NA	NA
ALB46015.2\|3212921_3214643_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.0e-10	27.4
ALB46014.1\|3214960_3215170_+	cold shock domain-containing protein	Q9AZD3	Lactococcus_phage	9.8e-09	42.9
ALB46013.1\|3215344_3216298_-	L-lactate dehydrogenase	NA	NA	NA	NA
ALB46012.1\|3216392_3217412_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
ALB46011.1\|3217588_3218290_-	hypothetical protein	NA	NA	NA	NA
AQS18291.1\|3218682_3219531_-	hypothetical protein	NA	NA	NA	NA
AQS18356.2\|3219600_3219747_+	AraC family transcriptional regulator	NA	NA	NA	NA
ALB46010.1\|3219848_3220166_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
ALB46009.1\|3220807_3222541_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.2e-52	30.2
ALB46008.1\|3222542_3224312_+	ABC transporter ATP-binding protein	F2Y302	Organic_Lake_phycodnavirus	1.1e-18	26.2
ALB46007.1\|3224406_3225063_-	cell wall-binding protein	NA	NA	NA	NA
ALB46005.1\|3225985_3226468_-	DNA-deoxyinosine glycosylase	NA	NA	NA	NA
AQS18292.1\|3227861_3229109_-	hypothetical protein	NA	NA	NA	NA
ALB46003.3\|3229281_3229488_-	DUF4351 domain-containing protein	NA	NA	NA	NA
ALB46002.1\|3229541_3230285_-	hypothetical protein	NA	NA	NA	NA
ALB46001.1\|3230488_3232432_-	DUF2075 domain-containing protein	NA	NA	NA	NA
ALB46000.1\|3232571_3232889_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
ALB48712.2\|3233096_3234668_+\|transposase	IS1182 family transposase	Q9MBP7	Staphylococcus_prophage	5.6e-64	34.0
ALB45999.1\|3234834_3235920_-	ATP-binding protein	NA	NA	NA	NA
AYK27015.1\|3236172_3239337_-	restriction endonuclease	Q9T1H9	Lactobacillus_phage	9.0e-37	27.5
AQS18293.1\|3239744_3239999_-	hypothetical protein	NA	NA	NA	NA
ALB45998.3\|3240029_3240659_-	histidine phosphatase family protein	NA	NA	NA	NA
ALB45997.1\|3241023_3242205_-	hypothetical protein	NA	NA	NA	NA
ALB45996.1\|3242191_3245446_-	cell division protein MukB	NA	NA	NA	NA
ALB45995.1\|3245420_3246026_-	DUF4194 domain-containing protein	NA	NA	NA	NA
ALB45994.1\|3246028_3247420_-	hypothetical protein	NA	NA	NA	NA
AYK27016.1\|3248596_3249181_-	hypothetical protein	NA	NA	NA	NA
3247493:3247518	attR	NA	NA	NA	NA
AYK27065.1\|3249948_3250020_-	hypothetical protein	NA	NA	NA	NA
AQS18294.1\|3250166_3251846_-	hypothetical protein	NA	NA	NA	NA
ALB45993.1\|3252286_3252526_-	hypothetical protein	A0A0A8WF72	Clostridium_phage	2.9e-12	44.7
ALB45992.1\|3253069_3253897_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA

DBSCAN-SWA_11

3805118 : 3810927

Clostridium_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ALB45619.1\|3805118_3805361_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	3.4e-13	51.4
ALB48691.1\|3805686_3806268_-	AAA family ATPase	Q0H276	Geobacillus_phage	4.3e-30	43.5
ALB45618.1\|3806362_3807349_-	DnaD domain protein	V5UQV4	Oenococcus_phage	2.0e-35	55.6
ALB45617.1\|3807426_3808197_-	recombinase RecT	A0A0A7RW37	Clostridium_phage	2.9e-66	52.4
ALB45616.1\|3808256_3809171_-	hypothetical protein	A0A0A7RWR9	Clostridium_phage	9.3e-104	57.6
ALB45615.1\|3809406_3809619_-	XRE family transcriptional regulator	NA	NA	NA	NA
ALB45614.1\|3809836_3810307_+	XRE family transcriptional regulator	Q786F1	Bacillus_phage	8.1e-11	34.8
ALB45613.1\|3810456_3810927_+	ImmA/IrrE family metallo-endopeptidase	Q9T201	Bacillus_phage	7.6e-17	38.9

DBSCAN-SWA_12

3983488 : 4018805

Clostridium_phage(68.75%)

tRNA,terminase,portal,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ALB45465.1\|3983488_3983995_-\|tail	phage tail protein	NA	NA	NA	NA
ALB45464.1\|3984634_3985891_+	magnesium transporter	NA	NA	NA	NA
ALB45463.1\|3985887_3987129_+	divalent metal cation transporter	NA	NA	NA	NA
ALB45462.1\|3987453_3988572_-	rod shape-determining protein RodA	NA	NA	NA	NA
ALB45461.1\|3989195_3990233_-	LacI family transcriptional regulator	NA	NA	NA	NA
ALB48682.1\|3990577_3991828_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
ALB45460.1\|3992379_3992709_+	cupin domain-containing protein	NA	NA	NA	NA
ALB45459.1\|3992996_3993311_-	L-rhamnose mutarotase	NA	NA	NA	NA
ALB45458.1\|3993343_3993979_-	hypothetical protein	NA	NA	NA	NA
ALB45457.1\|3993994_3994798_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
ALB45456.1\|3994988_3995846_+	AraC family transcriptional regulator	NA	NA	NA	NA
ALB45455.1\|3996030_3996960_+	peptidoglycan-binding protein	Q8W6X9	Synechococcus_virus	2.0e-24	41.2
ALB45454.1\|3997033_3997717_-	DUF4309 domain-containing protein	NA	NA	NA	NA
ALB45453.1\|3998143_3998392_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	2.6e-16	55.1
ALB45452.1\|3998561_3999593_-	DUF1646 domain-containing protein	NA	NA	NA	NA
ALB45451.1\|3999954_4003065_-	PAS domain S-box protein	A0A2K9L0Z8	Tupanvirus	6.0e-17	27.1
ALB45450.1\|4003183_4003534_-	SdpI family protein	NA	NA	NA	NA
ALB45449.1\|4003554_4004049_-\|tRNA	prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
ALB45448.1\|4004376_4005039_-	cell wall-binding protein	NA	NA	NA	NA
ALB45447.1\|4005445_4005832_-	cobalt ABC transporter permease	I2E8W8	Clostridium_phage	1.0e-19	42.7
ALB45446.1\|4005846_4006080_-	hypothetical protein	A0A0A7S0T7	Clostridium_phage	4.1e-16	51.9
AQS18322.1\|4006243_4006459_-	hypothetical protein	S6B9W8	Thermus_phage	4.7e-06	59.5
ALB45445.1\|4006451_4006730_-	hypothetical protein	NA	NA	NA	NA
ALB45444.1\|4007966_4008740_-	hypothetical protein	NA	NA	NA	NA
ALB45443.1\|4008911_4009565_-\|tail	phage tail protein	A0A0A7RTP0	Clostridium_phage	7.2e-50	57.6
ALB45442.1\|4009566_4010271_-	DUF2313 domain-containing protein	A0A0A7RTT8	Clostridium_phage	2.3e-41	44.8
ALB45441.1\|4010263_4011370_-\|plate	baseplate J/gp47 family protein	A0A0A7RUN3	Clostridium_phage	2.5e-50	35.7
ALB45440.1\|4011362_4011803_-	DUF2634 domain-containing protein	A0A0A7S0E2	Clostridium_phage	2.3e-23	44.8
ALB45439.1\|4011795_4012119_-	DUF2577 domain-containing protein	NA	NA	NA	NA
ALB45438.1\|4012118_4013123_-\|terminase	terminase	A0A0A7RTP6	Clostridium_phage	7.7e-59	37.7
ALB45437.1\|4013119_4013599_-	hypothetical protein	A0A090DBR9	Clostridium_phage	5.4e-18	32.0
ALB45436.1\|4013612_4016033_-	hypothetical protein	A0A2K9V3N5	Faecalibacterium_phage	3.7e-06	33.3
ALB45435.1\|4016208_4016613_-	XkdN-like protein	A0A0A7RTP2	Clostridium_phage	8.2e-28	48.4
ALB45434.1\|4017239_4017671_-\|portal	phage portal protein	A0A0A7RVT1	Clostridium_phage	3.8e-39	58.1
ALB45433.1\|4017683_4018805_-\|tail	phage tail sheath protein	A0A0A7S0D2	Clostridium_phage	1.3e-83	46.5

DBSCAN-SWA_13

5778647 : 5853278

Bacillus_phage(18.18%)

transposase,integrase,protease

attL 5771638:5771654|attR 5800474:5800490

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5771638:5771654	attL	NA	NA	NA	NA
ALB44089.1\|5778647_5779022_-\|transposase	transposase	NA	NA	NA	NA
ALB44088.1\|5779023_5780979_-\|integrase	integrase	NA	NA	NA	NA
ALB44087.1\|5780971_5782099_-\|transposase	transposase	NA	NA	NA	NA
ALB44086.1\|5782394_5782661_-	transcriptional regulator	NA	NA	NA	NA
ALB44085.1\|5782929_5783415_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA
ALB44084.1\|5783423_5784752_-	6-phospho-alpha-glucosidase	NA	NA	NA	NA
ALB44083.1\|5784773_5786369_-	PTS glucose transporter subunit IIBC	NA	NA	NA	NA
ALB48620.1\|5786609_5787335_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
ALB44082.1\|5787520_5789284_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.2e-11	34.2
ALB44081.1\|5789584_5790772_-	amidohydrolase	NA	NA	NA	NA
ALB44080.1\|5791191_5792493_+\|transposase	IS110 family transposase	NA	NA	NA	NA
ALB44079.2\|5792640_5793684_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
ALB44078.1\|5793692_5794490_-	carbon-nitrogen family hydrolase	NA	NA	NA	NA
ALB44077.1\|5794590_5794935_-	hypothetical protein	NA	NA	NA	NA
ALB44076.1\|5795482_5795872_+	response regulator	NA	NA	NA	NA
ALB44075.1\|5795901_5798841_+	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	4.4e-30	28.2
ALB44074.1\|5798882_5799245_+	Hpt domain-containing protein	NA	NA	NA	NA
ALB48619.1\|5799363_5799774_-	hemerythrin	NA	NA	NA	NA
ALB44073.1\|5800014_5800242_-	hypothetical protein	NA	NA	NA	NA
ALB44072.1\|5800275_5800683_-	hemerythrin	NA	NA	NA	NA
5800474:5800490	attR	NA	NA	NA	NA
ALB44071.1\|5800801_5801209_-	response regulator	A0A2K9L4R0	Tupanvirus	2.0e-05	27.6
ALB44070.1\|5801235_5802708_-	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	3.9e-43	45.1
ALB44069.1\|5802749_5804354_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
ALB44068.1\|5804369_5804867_-	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
ALB44067.1\|5804901_5807526_-	HAMP domain-containing protein	NA	NA	NA	NA
ALB44066.1\|5807624_5807996_-	DNA-binding response regulator	NA	NA	NA	NA
ALB44065.1\|5808438_5809095_+	DNA-binding response regulator	NA	NA	NA	NA
ALB44064.1\|5809106_5810132_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
ALB44063.1\|5810174_5810990_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
ALB44062.1\|5811005_5812727_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
ALB44061.1\|5812779_5814828_-	chemotaxis protein CheA	NA	NA	NA	NA
ALB44060.1\|5815085_5815820_-	chemotaxis protein MotB	NA	NA	NA	NA
ALB44059.1\|5815837_5816623_-	flagellar motor protein MotA	NA	NA	NA	NA
ALB44058.1\|5817198_5818923_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.1e-09	41.7
ALB44057.1\|5819213_5820656_-	glycoside hydrolase family 1 protein	A0A0B5JD41	Pandoravirus	2.0e-47	29.3
ALB44056.1\|5821077_5821773_-	manganese catalase family protein	NA	NA	NA	NA
ALB44055.1\|5822095_5823202_-	DUF362 domain-containing protein	NA	NA	NA	NA
ALB44054.1\|5823585_5824377_-	AAC(3) family N-acetyltransferase	O64018	Bacillus_phage	7.2e-52	40.2
ALB44053.1\|5824402_5825254_-	AraC family transcriptional regulator	NA	NA	NA	NA
ALB44052.1\|5825300_5826350_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
ALB44051.1\|5826381_5827353_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
ALB44050.1\|5827387_5828488_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
ALB44049.1\|5829828_5832846_-	hypothetical protein	NA	NA	NA	NA
ALB44048.2\|5833070_5834108_-	hypothetical protein	NA	NA	NA	NA
ALB44047.1\|5834169_5835195_-	hypothetical protein	NA	NA	NA	NA
ALB44046.1\|5835440_5836691_-	hypothetical protein	NA	NA	NA	NA
ALB44045.1\|5836817_5838422_-	LlaJI family restriction endonuclease	NA	NA	NA	NA
AQS18348.1\|5838463_5840374_-	hypothetical protein	Q6DMW9	Streptococcus_phage	3.5e-36	33.3
ALB44044.1\|5840489_5841716_-	DNA cytosine methyltransferase	F2Y148	Organic_Lake_phycodnavirus	8.6e-20	28.3
ALB48617.2\|5841728_5842982_-	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	2.4e-57	38.5
AYK27057.1\|5843059_5843860_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
ALB48616.1\|5843969_5845721_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.2e-32	28.2
ALB44043.1\|5846805_5847393_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
ALB44042.1\|5847452_5847695_-	hypothetical protein	NA	NA	NA	NA
ALB44041.1\|5848006_5848531_+	hypothetical protein	NA	NA	NA	NA
ALB44040.1\|5848628_5848829_+	YvrJ family protein	NA	NA	NA	NA
ALB44039.1\|5850935_5851322_-	hypothetical protein	NA	NA	NA	NA
ALB44038.1\|5852150_5853278_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_14

5865312 : 5874833

Clostridium_phage(37.5%)

integrase

attL 5860444:5860460|attR 5887196:5887212

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5860444:5860460	attL	NA	NA	NA	NA
ALB44031.2\|5865312_5866029_-	hypothetical protein	A0A1L2BY85	Clostridium_phage	2.0e-61	55.0
ALB44030.1\|5866163_5866388_+	DUF1659 domain-containing protein	NA	NA	NA	NA
ALB44029.1\|5866431_5866650_+	DUF2922 domain-containing protein	NA	NA	NA	NA
ALB44027.1\|5867566_5867959_-	hypothetical protein	NA	NA	NA	NA
ALB44026.1\|5867963_5868203_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	7.5e-13	52.7
ALB44025.1\|5868317_5868944_-	AAA family ATPase	Q0H276	Geobacillus_phage	5.2e-29	41.4
ALB44024.1\|5868993_5870310_-	phage replisome organizer	V5UQV4	Oenococcus_phage	1.0e-26	51.7
ALB44023.1\|5870451_5870682_-	hypothetical protein	NA	NA	NA	NA
ALB44022.1\|5870700_5870922_-	DNA-binding protein	A0A2I7SCU5	Paenibacillus_phage	5.5e-10	51.5
ALB44021.1\|5871038_5871263_-	XRE family transcriptional regulator	NA	NA	NA	NA
ALB44020.1\|5871515_5871890_+	XRE family transcriptional regulator	A0A090D830	Clostridium_phage	1.8e-13	38.1
ALB44019.1\|5872245_5873403_+\|integrase	site-specific integrase	A0A0A8WIF9	Clostridium_phage	5.1e-107	51.4
ALB44018.1\|5873468_5874833_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	5.9e-102	41.9
5887196:5887212	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP011966

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection