CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	0 crisprs	csa3,DEDDh,cas3,DinG	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

410207 : 528921

115

Staphylococcus_phage(90.62%)

protease,tRNA,transposase,bacteriocin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AHW67656.1\|410207_411527_-\|transposase	ISL3 family transposase IS1181	NA	NA	NA	NA
AHW68201.1\|412019_413081_+	PTS transporter subunit IIC	NA	NA	NA	NA
AHW66974.1\|413338_414796_+	ABC transporter permease	NA	NA	NA	NA
AHW67360.2\|414782_415511_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-36	42.7
AHW68261.2\|415646_416789_+	epoxyqueuosine reductase	NA	NA	NA	NA
AHW68004.1\|416793_417264_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
AHW65749.1\|417422_418022_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA
AHW67002.1\|418046_418199_+	hypothetical protein	NA	NA	NA	NA
AVC63514.1\|418263_418470_-	hypothetical protein	NA	NA	NA	NA
AVC63515.1\|418494_418857_-	hypothetical protein	NA	NA	NA	NA
AHW66758.1\|418975_419371_+	hypothetical protein	NA	NA	NA	NA
AHW67980.1\|419566_420952_+	class II fumarate hydratase	NA	NA	NA	NA
AHW66695.1\|421414_422236_-	RluA family pseudouridine synthase	NA	NA	NA	NA
AHW67561.1\|422398_423511_+	histidine kinase	NA	NA	NA	NA
AHW68153.1\|423532_424156_+	DNA-binding response regulator	NA	NA	NA	NA
AHW67430.1\|424511_424976_+	transcriptional regulator	NA	NA	NA	NA
AHW65813.1\|425154_426279_+	DUF445 domain-containing protein	NA	NA	NA	NA
AHW66836.1\|426347_426692_+	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	7.5e-06	29.7
AVC63516.1\|427074_427173_+	hypothetical protein	NA	NA	NA	NA
AHW67279.1\|427463_428660_+	exonuclease SbcCD subunit D	NA	NA	NA	NA
AHW67170.1\|428649_431586_+	DNA repair protein Rad50	NA	NA	NA	NA
AHW67850.1\|431582_432524_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA
AHW67091.1\|432644_433607_-	foldase	NA	NA	NA	NA
AHW66293.1\|433811_434369_-	DUF3267 domain-containing protein	NA	NA	NA	NA
AHW66735.1\|435101_435467_-	YtxH domain-containing protein	NA	NA	NA	NA
AHW66346.1\|435608_436031_-	HIT family protein	NA	NA	NA	NA
AHW67790.1\|436164_436905_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-24	29.8
AHW68161.1\|436897_438121_+	multidrug ABC transporter ATP-binding protein	NA	NA	NA	NA
AHW67760.1\|438244_438748_-	signal transduction protein TRAP	NA	NA	NA	NA
AVC63517.1\|438910_439021_+	hypothetical protein	NA	NA	NA	NA
AHW68089.1\|439010_440048_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
AHW67814.1\|440105_441029_+	ferrochelatase	NA	NA	NA	NA
AHW65740.1\|441052_442453_+	protoporphyrinogen oxidase	NA	NA	NA	NA
AVC63518.1\|442454_442682_-	hypothetical protein	NA	NA	NA	NA
AHW68083.1\|442775_443330_+	serine hydrolase family protein	NA	NA	NA	NA
AHW66382.1\|445786_446575_-	DUF1828 domain-containing protein	A0A2H4PQI0	Staphylococcus_phage	5.3e-140	95.8
AHW66321.2\|446587_447127_-	hypothetical protein	Q4ZCB9	Staphylococcus_virus	2.0e-61	76.8
AHW68082.1\|447926_448862_+	beta-channel forming cytolysin	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0
AHW66787.1\|448863_449847_+	bi-component leukocidin LukED subunit D	A0A2H4PQH7	Staphylococcus_phage	2.3e-185	99.1
AVC63519.1\|450088_450253_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA
AHW66423.1\|450278_451598_-\|transposase	ISL3 family transposase IS1181	NA	NA	NA	NA
AVC63520.1\|451854_452046_-	hypothetical protein	NA	NA	NA	NA
AHW67840.1\|452489_452633_+	gallidermin/nisin family lantibiotic	A0A2H4PQH4	Staphylococcus_phage	5.3e-14	80.9
AHW66701.1\|452697_455691_+\|bacteriocin	bacteriocin biosynthesis protein	A0A2H4PQG8	Staphylococcus_phage	0.0e+00	97.2
AHW66138.1\|455683_456928_+	lanthionine synthetase	A0A2H4PQH9	Staphylococcus_phage	1.1e-237	99.8
AHW67353.1\|456943_457462_+	enterotoxin	A0A2H4PQG9	Staphylococcus_phage	2.0e-95	100.0
AHW66833.1\|457471_458845_+	peptidase S8	A0A2H4PQH1	Staphylococcus_phage	2.9e-258	100.0
AHW67838.1\|458867_459560_+	lantibiotic ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.2e-124	100.0
AHW65995.1\|459556_460318_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	A0A2H4PQH2	Staphylococcus_phage	4.4e-131	100.0
AHW67350.1\|460314_461013_+	BsaG protein	A0A2H4PQH0	Staphylococcus_phage	3.8e-113	94.4
AHW67825.1\|461486_462053_-	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	3.3e-99	100.0
AVC63521.1\|462362_462581_+	hypothetical protein	NA	NA	NA	NA
AHW66183.1\|463016_463733_+\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	2.0e-125	96.2
AHW65778.1\|463857_464580_+\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	2.4e-131	99.6
AHW67385.1\|464637_465357_+\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.2e-130	99.2
AHW66742.1\|465477_466197_+\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
AVC63522.1\|466145_466253_-	hypothetical protein	NA	NA	NA	NA
AHW66920.1\|466354_467071_+\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	1.1e-131	100.0
AHW66672.1\|467221_467941_+\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.1e-131	100.0
AVC63523.1\|468005_468140_+	hypothetical protein	NA	NA	NA	NA
AHW67433.2\|468120_469860_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	4.4e-288	99.4
AHW68102.1\|469852_471052_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	5.5e-229	99.7
AHW67420.2\|476552_476912_+	DUF1433 domain-containing protein	NA	NA	NA	NA
AVC63524.1\|477259_477361_-	hypothetical protein	NA	NA	NA	NA
AHW66741.1\|477782_477926_+	hypothetical protein	A0A2H4PQU1	Staphylococcus_phage	6.4e-20	100.0
AVC63525.1\|478128_478338_+\|transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	1.4e-31	100.0
AHW67289.1\|478661_479045_+	hypothetical protein	NA	NA	NA	NA
AHW66348.1\|479055_479232_+	hypothetical protein	NA	NA	NA	NA
AHW67998.1\|479233_479419_+	hypothetical protein	NA	NA	NA	NA
AHW67638.2\|479532_480174_+	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	2.6e-76	93.2
AHW66014.1\|480391_480943_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	1.0e-20	94.1
AHW66060.1\|481040_481385_-	DUF3969 domain-containing protein	A0A2H4PQN6	Staphylococcus_phage	6.3e-53	92.0
AHW67917.1\|481425_482052_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	7.1e-79	82.7
AHW67593.1\|482127_483123_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	7.1e-73	96.4
AHW65996.2\|483203_483854_-	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	2.7e-44	88.4
AHW67303.2\|484156_484612_+	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	3.0e-79	98.6
AHW66339.1\|484770_486249_+	2-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.0e-281	97.0
AHW68307.1\|486253_487255_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	4.8e-186	97.6
AHW67299.1\|487251_487509_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AHW67639.2\|487574_488048_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	4.7e-83	98.1
AHW66520.2\|488052_488799_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	7.1e-142	98.4
AHW67057.1\|489173_489659_+\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	4.9e-19	35.4
AHW67059.1\|489794_491387_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AHW66642.1\|491757_492951_+	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
AHW67768.1\|493075_493984_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.2e-136	98.7
AHW68262.1\|494195_495029_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	9.6e-156	98.6
AHW68059.1\|497111_497465_-	camphor resistance protein CrcB	A0A2H4PQQ7	Staphylococcus_phage	1.0e-21	99.1
AHW66981.1\|497461_497827_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AHW66204.1\|498082_498385_-	hypothetical protein	NA	NA	NA	NA
AHW68159.1\|498644_499358_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AHW65829.1\|499797_500433_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AHW67757.1\|500728_501172_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	3.0e-55	85.0
AHW67308.1\|501158_501602_-	competence protein ComK	NA	NA	NA	NA
AHW67973.2\|501714_502185_-	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
AHW66218.1\|502383_502608_+	hypothetical protein	NA	NA	NA	NA
AHW67756.1\|502883_503738_+	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AHW66049.1\|504032_504428_-	protein ArsC	A0A2H4PQT9	Staphylococcus_phage	6.3e-73	100.0
AHW67887.2\|504445_505738_-	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
AVC63526.1\|505737_506052_-	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	2.0e-53	100.0
AHW67030.1\|506574_508077_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
AHW66373.2\|508569_509601_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.8e-197	99.4
AHW66197.1\|509607_510240_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
AHW66383.1\|510250_511432_+	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
AHW66128.1\|511444_511909_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
AHW67905.1\|512030_513032_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
AVC63603.1\|512940_513132_+	hypothetical protein	NA	NA	NA	NA
AVC63527.1\|513143_513263_+	hypothetical protein	NA	NA	NA	NA
AHW66233.1\|513265_514093_+	alpha/beta hydrolase	NA	NA	NA	NA
AHW67436.1\|515671_516073_+	MarR family transcriptional regulator	NA	NA	NA	NA
AHW67131.1\|516192_516756_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AHW68303.1\|516752_517706_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AHW66469.2\|517815_518997_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
AHW66058.2\|519284_521702_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.2
AHW67325.1\|521723_522035_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
AHW67635.1\|522360_528921_+	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	2.0e-304	98.1

DBSCAN-SWA_2

654749 : 663792

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AHW66243.1\|654749_655754_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
AHW68272.1\|655755_656781_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AHW66087.1\|656803_657943_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AHW67245.1\|657961_658222_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AHW66147.1\|658496_660776_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AHW65785.1\|660978_663252_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.2e-62	28.8
AHW67235.1\|663273_663792_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5

DBSCAN-SWA_3

732929 : 741241

Caulobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AHW65852.1\|732929_734729_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.6e-54	36.0
AHW66964.1\|734952_736059_+	RNA polymerase sigma factor SigA	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AHW67488.1\|736189_736867_+\|tRNA	tRNA (adenine(22)-N(1))-methyltransferase TrmK	NA	NA	NA	NA
AHW68139.1\|736869_737970_+	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
AHW66530.1\|738083_739430_+	DEAD/DEAH box family ATP-dependent RNA helicase	A0A1V0SIR5	Klosneuvirus	5.3e-55	33.7
AHW67750.1\|739439_740330_+	endonuclease	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
AHW67066.1\|740455_741241_+	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3

DBSCAN-SWA_4

1293122 : 1301595

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AHW67893.1\|1293122_1293689_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1
AHW67934.1\|1293691_1294720_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-61	41.4
AHW67883.1\|1294712_1296197_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
AHW67754.1\|1296175_1298365_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.0e-140	39.7
AHW66306.1\|1298357_1299029_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AHW66910.1\|1299030_1299294_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AHW68311.1\|1299293_1299998_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AHW68099.1\|1300001_1301126_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AHW68125.1\|1301112_1301595_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7

DBSCAN-SWA_5

1462513 : 1483722

Staphylococcus_phage(77.78%)

terminase,integrase,coat

attL 1465235:1465251|attR 1481170:1481186

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AHW67090.1\|1462513_1463275_-	Fe-S cluster assembly ATPase SufC	A0A1V0SE00	Indivirus	4.4e-06	23.3
AHW68352.1\|1463602_1464454_+	DUF368 domain-containing protein	NA	NA	NA	NA
AHW66295.1\|1464686_1464881_-	CsbD family protein	NA	NA	NA	NA
1465235:1465251	attL	NA	NA	NA	NA
AHW67772.2\|1465711_1465912_-	hypothetical protein	W5R9N2	Staphylococcus_phage	3.7e-29	100.0
AVC63350.1\|1465898_1466009_-	hypothetical protein	W5R8J7	Staphylococcus_phage	2.4e-11	94.4
AHW65991.2\|1466079_1466232_-	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	7.6e-19	98.0
AHW65882.1\|1466604_1467162_+	hypothetical protein	A0A1W6JQE5	Staphylococcus_phage	1.4e-70	73.8
AHW67435.1\|1467239_1468040_-	enterotoxin	A0A097PAT7	Streptococcus_pyogenes_phage	1.0e-53	49.4
AHW67494.1\|1468347_1468917_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	1.0e-100	97.9
AHW67302.1\|1468913_1469255_-	pathogenicity island protein	A0A1W6JQM3	Staphylococcus_phage	1.4e-57	98.2
AHW68155.1\|1469257_1469785_-\|coat	spore coat protein	A0A1W6JQH7	Staphylococcus_phage	3.5e-87	97.1
AHW66908.1\|1469835_1470054_-	hypothetical protein	NA	NA	NA	NA
AHW68075.1\|1470071_1470650_-	pathogenicity island protein	A0A2H4JBG0	uncultured_Caudovirales_phage	1.4e-28	38.4
AHW66324.1\|1470661_1471003_-	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	1.4e-57	99.1
AHW66488.1\|1471519_1472161_-	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	1.5e-108	91.5
AHW66893.1\|1472157_1472442_-	pathogenicity island protein	A0A1W6JQE4	Staphylococcus_phage	1.9e-47	95.7
AHW66141.1\|1472443_1472806_-	pathogenicity island protein	A0A1W6JQD5	Staphylococcus_phage	8.9e-66	99.2
AHW66955.1\|1473106_1474564_-	virulence-associated protein E	A0A1W6JQD6	Staphylococcus_phage	1.0e-277	96.1
AHW67976.1\|1474580_1475450_-	mobile element-associated protein	A0A1W6JQL5	Staphylococcus_phage	3.4e-156	92.7
AHW67500.1\|1475513_1475834_-	DUF1474 domain-containing protein	Q4ZE75	Staphylococcus_phage	1.3e-20	51.9
AHW68231.1\|1475836_1476046_-	pathogenicity island protein	Q4ZE76	Staphylococcus_phage	1.7e-29	94.2
AHW66699.1\|1476038_1476185_-	pathogenicity island protein	NA	NA	NA	NA
AHW67611.1\|1476196_1476469_-	pathogenicity island protein	Q4ZE77	Staphylococcus_phage	9.7e-41	90.0
AHW66232.1\|1476461_1476725_-	XRE family transcriptional regulator	A0A2H4J9X2	uncultured_Caudovirales_phage	3.1e-36	94.8
AHW66020.1\|1476917_1477250_+	XRE family transcriptional regulator	A0A1J0MFC1	Staphylococcus_phage	1.6e-37	74.5
AHW67283.1\|1477261_1477720_+	ImmA/IrrE family metallo-endopeptidase	A0A0H4J322	Staphylococcus_phage	5.1e-66	83.0
AHW66585.1\|1477736_1478168_+	hypothetical protein	Q4ZCB6	Staphylococcus_virus	5.1e-36	56.0
AHW67914.2\|1478237_1478966_+	exotoxin	A0EX09	Staphylococcus_phage	2.3e-28	35.4
AHW65972.1\|1478989_1479718_+	exotoxin	A0EX09	Staphylococcus_phage	1.9e-22	32.3
AHW67369.1\|1479806_1481027_+\|integrase	site-specific integrase	Q4ZE80	Staphylococcus_phage	6.4e-100	47.5
AHW66979.1\|1481169_1481991_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
1481170:1481186	attR	NA	NA	NA	NA
AHW67789.2\|1482008_1482704_-	ABC transporter permease	NA	NA	NA	NA
AHW67894.1\|1482696_1483722_-	methionine import ATP-binding protein MetN 2	G9BWD6	Planktothrix_phage	1.2e-27	36.8

DBSCAN-SWA_6

1562208 : 1576995

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AHW66547.1\|1562208_1562970_-	iron ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6
AHW67845.1\|1562966_1563923_-	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AHW67310.1\|1563909_1564881_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
AVC63360.1\|1564919_1565075_-	hypothetical protein	NA	NA	NA	NA
AVC63361.1\|1565351_1565456_-	hypothetical protein	NA	NA	NA	NA
AHW67133.1\|1565588_1566560_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AHW67793.1\|1566677_1568783_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AHW65886.1\|1568745_1569144_-	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AVC63362.1\|1569293_1569560_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA
AHW67109.1\|1569944_1570811_+	EamA/RhaT family transporter	NA	NA	NA	NA
AHW66350.1\|1570830_1571331_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AVC63363.1\|1571360_1571606_+	hypothetical protein	NA	NA	NA	NA
AHW66516.1\|1571671_1573177_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AVC63364.1\|1573254_1573356_-	hypothetical protein	NA	NA	NA	NA
AHW66980.1\|1573446_1574364_+	lipid kinase	A0A1V0SBJ0	Catovirus	3.7e-07	22.0
AVC63365.1\|1574776_1574872_-	hypothetical protein	NA	NA	NA	NA
AHW65750.1\|1575043_1575586_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AHW65835.1\|1575936_1576995_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7

DBSCAN-SWA_7

1588967 : 1596787

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AHW66561.1\|1588967_1590119_-	anthranilate synthase component I family protein	A0A0B5J984	Pandoravirus	1.6e-23	35.7
AHW67118.1\|1590102_1590696_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
AHW65992.1\|1591046_1591715_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AHW66481.1\|1591716_1592136_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
AHW66240.1\|1592139_1592853_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AHW68023.1\|1592951_1593536_+	hypothetical protein	NA	NA	NA	NA
AHW67837.1\|1593815_1594256_+	hypothetical protein	NA	NA	NA	NA
AHW67949.1\|1594597_1595071_+	DoxX family protein	NA	NA	NA	NA
AHW67498.1\|1595045_1595732_+	DNA-binding response regulator	NA	NA	NA	NA
AHW68226.1\|1595731_1596787_+	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	2.1e-14	30.0

DBSCAN-SWA_8

1987002 : 2029734

Staphylococcus_phage(85.92%)

portal,tail,head,protease,holin,integrase,capsid,terminase

attL 1986252:1986269|attR 2029828:2029845

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1986252:1986269	attL	NA	NA	NA	NA
AHW68148.1\|1987002_1988457_-	CHAP domain-containing protein	A0A0N6WMR3	Staphylococcus_phage	3.0e-290	100.0
AHW67533.1\|1988468_1988771_-\|holin	phage holin	A0A2I6PET6	Staphylococcus_phage	7.0e-48	100.0
AHW65982.1\|1988906_1989206_-	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AHW67958.1\|1989251_1989416_-	XkdX family protein	A0A2I6PES4	Staphylococcus_phage	2.5e-23	98.1
AHW67202.1\|1989408_1989798_-	hypothetical protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
AHW67094.1\|1989797_1991264_-	DUF2479 domain-containing protein	A0A2I6PES7	Staphylococcus_phage	2.9e-272	99.4
AHW68016.1\|1991263_1993174_-	hypothetical protein	A0A2I6PEQ9	Staphylococcus_phage	0.0e+00	99.8
AHW68341.1\|1993189_1993480_-	hypothetical protein	U5U457	Staphylococcus_phage	2.1e-49	100.0
AHW66442.1\|1993479_1995063_-	peptidase	A0A2I6PEQ5	Staphylococcus_phage	9.3e-309	100.0
AHW66671.1\|1995071_1995896_-\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	4.1e-159	100.0
AHW66710.1\|1995895_2002096_-\|tail	phage tail tape measure protein	Q4ZCL0	Staphylococcus_virus	0.0e+00	99.6
AHW66006.1\|2002109_2002268_-	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
AHW67333.1\|2002309_2002660_-	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	1.1e-55	100.0
AHW67534.1\|2002717_2003173_-\|tail	phage tail protein	A0A2I6PER6	Staphylococcus_phage	5.7e-78	100.0
AHW67476.1\|2003264_2003906_-\|tail	phage tail protein	A0A2I6PEP6	Staphylococcus_phage	5.9e-121	100.0
AHW65922.1\|2003940_2004336_-	DUF3168 domain-containing protein	A0A2I6PEQ4	Staphylococcus_phage	8.8e-67	100.0
AHW65747.1\|2004336_2004738_-	hypothetical protein	A0A2I6PF54	Staphylococcus_phage	8.1e-68	100.0
AHW68271.1\|2004734_2005067_-	hypothetical protein	A0A2I6PES3	Staphylococcus_phage	4.1e-57	100.0
AHW67720.1\|2005078_2005357_-\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
AHW68321.1\|2005425_2006589_-\|capsid	phage major capsid protein	A0A2I6PEQ3	Staphylococcus_phage	1.2e-217	100.0
AHW66088.1\|2006600_2007374_-\|protease	Clp protease ClpP	A0A2I6PEQ7	Staphylococcus_phage	2.4e-137	100.0
AHW68002.1\|2007357_2008596_-\|portal	phage portal protein	A0A2K9VBP0	Staphylococcus_phage	6.9e-235	100.0
AHW66565.1\|2008600_2010292_-\|terminase	terminase large subunit	A0A2I6PE44	Staphylococcus_phage	0.0e+00	100.0
AHW66215.1\|2010281_2010587_-\|terminase	phage terminase small subunit P27 family	A0A2I6PE27	Staphylococcus_phage	2.9e-49	100.0
AHW66065.1\|2010715_2011030_-	HNH endonuclease	A0A2I6PDC4	Staphylococcus_phage	2.5e-56	100.0
AHW66226.1\|2011186_2011624_-	transcriptional regulator	B7T0I6	Staphylococcus_virus	6.1e-77	100.0
AHW66765.2\|2011636_2011987_-	helicase	Q9B0E7	Staphylococcus_virus	3.5e-59	98.3
AHW67207.1\|2011943_2012144_-	DUF1514 domain-containing protein	A0A2I6PF41	Staphylococcus_phage	2.9e-26	100.0
AHW68270.1\|2012211_2012364_-	transcriptional regulator	A0A2I6PEM5	Staphylococcus_phage	4.4e-19	98.0
AHW67691.1\|2012356_2012560_-	hypothetical protein	A0A0N9BAX5	Staphylococcus_phage	5.2e-31	100.0
AHW66315.1\|2012556_2012751_-	hypothetical protein	A0A0N7E0T8	Staphylococcus_phage	1.0e-28	98.4
AHW66319.1\|2012747_2012954_-	DUF1381 domain-containing protein	B7T0C2	Staphylococcus_virus	6.0e-19	95.6
AHW67254.1\|2012990_2013533_-	dUTP pyrophosphatase	Q4ZD81	Staphylococcus_virus	1.5e-96	100.0
AHW66038.1\|2013537_2013774_-	hypothetical protein	C8CH04	Staphylococcus_phage	1.1e-35	100.0
AHW66970.1\|2013766_2014075_-	hypothetical protein	Q4ZBK6	Staphylococcus_phage	8.1e-52	100.0
AHW65911.1\|2014071_2014419_-	hypothetical protein	D2JGL4	Staphylococcus_phage	5.9e-59	100.0
AHW65985.1\|2014415_2014817_-	hypothetical protein	A0A0N7E0T5	Staphylococcus_phage	7.0e-72	100.0
AHW67680.1\|2014819_2015026_-	hypothetical protein	A0A0N9BAW9	Staphylococcus_phage	3.0e-34	100.0
AHW66369.2\|2015039_2015282_-	hypothetical protein	A0A0N7E0T2	Staphylococcus_phage	2.5e-40	100.0
AHW66439.1\|2015285_2015642_-	hypothetical protein	A0A0F6N3E3	Staphylococcus_phage	2.1e-59	97.5
AHW66418.1\|2015653_2015911_-	XRE family transcriptional regulator	Q4ZBU1	Staphylococcus_virus	4.1e-41	100.0
AHW66854.1\|2015911_2016097_-	DUF3113 domain-containing protein	A0A0H4IPE3	Staphylococcus_phage	1.2e-26	96.7
AHW66398.1\|2016101_2016506_-	hypothetical protein	A0A0H4ISQ5	Staphylococcus_phage	9.0e-67	100.0
AHW66985.1\|2016502_2016928_-	adenine methyltransferase	Q4ZAC6	Staphylococcus_virus	8.0e-82	100.0
AHW68074.1\|2016937_2017159_-	DUF3269 domain-containing protein	Q9G021	Staphylococcus_phage	1.3e-35	100.0
AHW66114.2\|2017161_2017377_-	hypothetical protein	B7T0B0	Staphylococcus_virus	1.2e-33	95.8
AHW67216.1\|2017373_2018615_-	damage-inducible protein	C8CGZ3	Staphylococcus_phage	2.6e-229	100.0
AHW66999.1\|2018611_2018968_-	hypothetical protein	M9NS37	Staphylococcus_phage	6.9e-63	98.3
AHW67694.1\|2018967_2019768_-	DnaD domain protein	Q8SDW2	Staphylococcus_phage	8.7e-106	98.5
AHW65981.1\|2019739_2020435_-	hypothetical protein	A0A0E3XBQ6	Staphylococcus_phage	9.5e-133	98.7
AHW66221.1\|2020448_2020868_-	Single-stranded DNA-binding protein 2	Q4ZA54	Staphylococcus_virus	5.3e-62	99.3
AHW67745.1\|2020867_2021491_-	DUF1071 domain-containing protein	A0A2H4PQQ6	Staphylococcus_phage	5.7e-113	99.0
AHW66869.1\|2021483_2021705_-	DUF2483 domain-containing protein	A7TWM6	Staphylococcus_phage	3.2e-34	100.0
AHW67809.2\|2021714_2022047_-	DUF1108 domain-containing protein	A0A2I6PDT0	Staphylococcus_phage	1.1e-54	99.1
AHW67627.1\|2021979_2022297_-	hypothetical protein	A0A2I6PEL3	Staphylococcus_phage	3.6e-31	95.8
AHW65897.1\|2022386_2022548_-	DUF1270 domain-containing protein	A9CR58	Staphylococcus_phage	8.6e-21	100.0
AHW66429.1\|2022560_2022824_-	helix-turn-helix domain-containing protein	A0A2I6PEL8	Staphylococcus_phage	7.4e-46	98.9
AHW66196.1\|2022878_2023130_+	hypothetical protein	A7TWL9	Staphylococcus_phage	1.9e-38	100.0
AHW65951.1\|2023107_2023299_-	hypothetical protein	A7TWL8	Staphylococcus_phage	1.1e-25	98.4
AHW66957.1\|2023346_2023727_+	DUF2513 domain-containing protein	Q4ZCQ5	Staphylococcus_virus	3.8e-67	99.2
AHW67274.1\|2023713_2023911_-	hypothetical protein	A7TWF5	Staphylococcus_phage	8.6e-23	95.4
AHW67923.1\|2023967_2024333_+	hypothetical protein	A0A2I6PF07	Staphylococcus_phage	2.4e-63	100.0
AVC63393.1\|2024301_2024547_-	DUF2829 domain-containing protein	A0A2I6PF15	Staphylococcus_phage	5.1e-41	100.0
AHW67397.1\|2024586_2024811_-	hypothetical protein	A0A0F6N4M2	Staphylococcus_phage	3.2e-34	100.0
AHW66987.1\|2024811_2025603_-	phage antirepressor	A0A0E3T9K2	Staphylococcus_phage	4.2e-145	99.6
AHW67510.1\|2025759_2026068_-	hypothetical protein	S4V9P0	Staphylococcus_phage	1.3e-49	100.0
AHW66514.1\|2026082_2026301_-	XRE family transcriptional regulator	Q8SDX1	Staphylococcus_phage	8.3e-35	98.6
AHW66711.1\|2026442_2027162_+	XRE family transcriptional regulator	Q8SDX2	Staphylococcus_phage	9.8e-133	100.0
AHW65899.1\|2027361_2027544_+	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	5.3e-27	100.0
AHW67067.1\|2027621_2028335_+	toxin MazF	A0A1X9H026	Staphylococcus_phage	2.5e-128	99.6
AHW66802.1\|2028528_2029734_+\|integrase	site-specific integrase	A0A1X9H094	Staphylococcus_phage	5.0e-222	100.0
2029828:2029845	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage