CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026973	Achromobacter insolitus strain FDAARGOS_88 chromosome, complete genome	0 crisprs	DEDDh,csa3,RT,DinG,WYL	0	0	4	0
CP026974	Achromobacter insolitus strain FDAARGOS_88 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

546387 : 575684

Burkholderia_virus(61.9%)

terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG38351.1\|546387_546840_+	hypothetical protein	Q8W6N7	Burkholderia_virus	3.3e-17	49.5
AVG38352.1\|546839_547550_+	DNA replication domain protein	T1SA92	Salmonella_phage	1.4e-38	70.6
AVG38353.1\|547579_547906_+	hypothetical protein	NA	NA	NA	NA
AVG43400.1\|547923_548856_+	hypothetical protein	A0A0U4B0G9	Pseudomonas_phage	4.6e-50	36.9
AVG38354.1\|548852_549554_+	hypothetical protein	NA	NA	NA	NA
AVG38355.1\|549550_550075_+	hypothetical protein	NA	NA	NA	NA
AVG38356.1\|550078_550492_+	hypothetical protein	Q6J1S6	Burkholderia_virus	5.1e-09	40.5
AVG38357.1\|550488_550983_+\|terminase	terminase small subunit	A0A0M3LSU1	Mannheimia_phage	1.6e-17	44.9
AVG38358.1\|550982_552407_+	TerL	Q6J1S4	Burkholderia_virus	5.7e-217	75.0
AVG38359.1\|552958_553168_+	hypothetical protein	NA	NA	NA	NA
AVG38360.1\|553167_554814_+	hypothetical protein	Q6J1S2	Burkholderia_virus	5.0e-148	52.1
AVG38361.1\|554810_555113_+	hypothetical protein	NA	NA	NA	NA
AVG38362.1\|555096_555849_+	hypothetical protein	Q6J1S0	Burkholderia_virus	6.0e-40	47.2
AVG38363.1\|555866_556871_+	hypothetical protein	G9L6C5	Escherichia_phage	1.5e-83	49.5
AVG38364.1\|556921_557368_+	hypothetical protein	W6MVK6	Pseudomonas_phage	1.1e-33	61.3
AVG38365.1\|557371_557686_+	hypothetical protein	NA	NA	NA	NA
AVG38366.1\|557697_558285_+	hypothetical protein	Q6J1R6	Burkholderia_virus	3.5e-51	56.5
AVG38367.1\|558284_560876_+	hypothetical protein	Q6J1R5	Burkholderia_virus	1.4e-229	47.8
AVG38368.1\|560887_561298_+	GNAT family acetyltransferase	A0A221SAN0	Ralstonia_phage	4.0e-14	38.5
AVG38369.1\|561299_561899_+	hypothetical protein	Q6J1R3	Burkholderia_virus	7.9e-19	48.5
AVG38370.1\|561902_564044_+	hypothetical protein	Q6J1R2	Burkholderia_virus	9.1e-41	27.0
AVG43401.1\|564697_566509_+	hypothetical protein	Q6J1R1	Burkholderia_virus	3.7e-43	31.0
AVG38371.1\|566505_569076_+	hypothetical protein	A0A193GZ61	Enterobacter_phage	8.6e-179	42.3
AVG38372.1\|569167_571381_+	hypothetical protein	Q6J1Q9	Burkholderia_virus	7.5e-22	51.3
AVG38373.1\|571399_571702_+	hypothetical protein	NA	NA	NA	NA
AVG38374.1\|571698_572193_+	lysozyme	A0A1R3Y5W5	Salmonella_virus	1.7e-30	47.8
AVG38375.1\|572171_572657_+	hypothetical protein	NA	NA	NA	NA
AVG38376.1\|573374_573593_-	hypothetical protein	NA	NA	NA	NA
AVG38377.1\|573642_574335_-	DUF159 family protein	A4JX27	Burkholderia_virus	1.8e-14	33.9
AVG38378.1\|574370_575684_-	DUF4102 domain-containing protein	Q6J1Q2	Burkholderia_virus	5.3e-76	40.7

DBSCAN-SWA_2

746909 : 792642

Burkholderia_phage(32.35%)

holin,head,tRNA,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG38499.1\|746909_747719_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
AVG43414.1\|747770_748985_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AVG38500.1\|749042_749717_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
AVG38501.1\|750294_751536_-	DUF4102 domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	3.4e-64	37.8
AVG43415.1\|751548_751749_-	transcriptional regulator	NA	NA	NA	NA
AVG38502.1\|751805_752102_-	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	2.1e-28	59.4
AVG38503.1\|752094_752727_-	hypothetical protein	NA	NA	NA	NA
AVG38504.1\|752719_753598_-	hypothetical protein	A0A2H5BP39	Klebsiella_phage	9.2e-08	50.0
AVG38505.1\|753594_753936_-	hypothetical protein	NA	NA	NA	NA
AVG38506.1\|753935_754199_-	hypothetical protein	NA	NA	NA	NA
AVG38507.1\|755397_755901_-	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	3.6e-41	54.5
AVG38508.1\|755900_756536_-	exonuclease	A0A0U2BXF3	Paracoccus_phage	3.6e-22	41.1
AVG38509.1\|756535_757315_-	single-stranded DNA-binding protein	B5WZW4	Pseudomonas_phage	3.5e-43	47.8
AVG38510.1\|757322_758420_-	hypothetical protein	Q9MC69	Pseudomonas_phage	9.7e-31	53.3
AVG38511.1\|758421_758613_-	hypothetical protein	NA	NA	NA	NA
AVG38512.1\|758609_759029_-	hypothetical protein	NA	NA	NA	NA
AVG38513.1\|759185_759554_-	hypothetical protein	NA	NA	NA	NA
AVG38514.1\|759557_759950_-	hypothetical protein	NA	NA	NA	NA
AVG38515.1\|760809_761466_+	hypothetical protein	NA	NA	NA	NA
AVG38516.1\|761538_762027_-	hypothetical protein	NA	NA	NA	NA
AVG43416.1\|762023_762341_-	hypothetical protein	NA	NA	NA	NA
AVG38517.1\|762837_763317_+	hypothetical protein	NA	NA	NA	NA
AVG38518.1\|763432_764533_-	LexA family transcriptional repressor	A0A2D1GNH0	Pseudomonas_phage	4.5e-12	54.1
AVG38519.1\|764609_764870_+	transcriptional regulator	NA	NA	NA	NA
AVG38520.1\|765075_765390_+	transcriptional regulator	NA	NA	NA	NA
AVG38521.1\|765391_765913_+	DUF1367 domain-containing protein	NA	NA	NA	NA
AVG43417.1\|765963_766371_+	DUF1364 domain-containing protein	Q3HR02	Burkholderia_phage	4.1e-11	41.7
AVG38522.1\|766360_767209_+	hypothetical protein	A0A2H4JDG9	uncultured_Caudovirales_phage	4.0e-32	65.0
AVG38523.1\|767195_767879_+	hypothetical protein	NA	NA	NA	NA
AVG43418.1\|768037_768415_+	hypothetical protein	R9ZZU8	Cellulophaga_phage	4.1e-29	54.0
AVG38524.1\|768414_768615_+	hypothetical protein	NA	NA	NA	NA
AVG38525.1\|768607_768964_+	hypothetical protein	NA	NA	NA	NA
AVG43419.1\|768981_769263_+	hypothetical protein	NA	NA	NA	NA
AVG38526.1\|769334_769652_-	hypothetical protein	NA	NA	NA	NA
AVG38527.1\|769883_770303_+\|terminase	terminase small subunit	E5AGA2	Erwinia_phage	5.9e-37	70.2
AVG43420.1\|770289_771528_+\|terminase	PBSX family phage terminase large subunit	A0A125RNL7	Pseudomonas_phage	5.3e-203	81.6
AVG38528.1\|771524_773033_+	DUF1073 domain-containing protein	W5S8I3	Pseudomonas_phage	5.5e-101	46.2
AVG38529.1\|772944_773805_+\|head	phage head morphogenesis protein	Q6IWU3	Burkholderia_phage	1.2e-44	38.2
AVG38530.1\|773785_775042_+	DUF2213 domain-containing protein	A0A088C4R4	Shewanella_sp._phage	3.2e-38	40.2
AVG38531.1\|775038_775521_+	hypothetical protein	A0A2H5BG33	Pseudoalteromonas_phage	5.4e-10	35.0
AVG38532.1\|775539_776622_+	DUF2184 domain-containing protein	Q6IWU6	Burkholderia_phage	1.8e-53	34.0
AVG38533.1\|776681_777032_+	hypothetical protein	Q6IWU7	Burkholderia_phage	2.1e-08	35.2
AVG38534.1\|777033_777462_+	DUF4054 domain-containing protein	A0A088C3T8	Shewanella_sp._phage	1.8e-17	36.2
AVG38535.1\|777458_777935_+	hypothetical protein	Q6IWU9	Burkholderia_phage	2.0e-20	41.4
AVG38536.1\|777931_778300_+	hypothetical protein	NA	NA	NA	NA
AVG38537.1\|778296_778824_+	hypothetical protein	NA	NA	NA	NA
AVG38538.1\|778834_780343_+	DUF3383 domain-containing protein	A0A088C3U1	Shewanella_sp._phage	1.6e-71	35.4
AVG38539.1\|780400_780850_+	hypothetical protein	A1Z014	Burkholderia_virus	6.8e-31	46.6
AVG38540.1\|780859_781315_+	hypothetical protein	Q6IWV4	Burkholderia_phage	9.9e-22	49.6
AVG38541.1\|781405_783238_+\|tail	phage tail protein	NA	NA	NA	NA
AVG38542.1\|783237_783768_+	hypothetical protein	NA	NA	NA	NA
AVG38543.1\|783764_784073_+	hypothetical protein	Q6IWP9	Burkholderia_phage	1.9e-08	33.3
AVG38544.1\|784065_784890_+	hypothetical protein	Q6IWQ0	Burkholderia_phage	7.8e-41	38.9
AVG38545.1\|784874_785561_+	hypothetical protein	A0A2H4P6V3	Pseudomonas_phage	3.6e-31	38.7
AVG38546.1\|785557_785902_+	hypothetical protein	A0A0K0L8X9	Pseudomonas_phage	6.4e-05	28.7
AVG38547.1\|785894_787085_+	hypothetical protein	Q6IWQ3	Burkholderia_phage	1.7e-68	42.7
AVG38548.1\|787081_787732_+	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	7.2e-42	44.2
AVG38549.1\|787732_788773_+	hypothetical protein	NA	NA	NA	NA
AVG38550.1\|788775_789162_+\|tail	phage tail protein	A5X9J5	Aeromonas_virus	7.9e-12	44.6
AVG38551.1\|789225_789516_+\|holin	holin	C7BGD7	Burkholderia_phage	2.2e-11	42.4
AVG38552.1\|789512_789923_+	hypothetical protein	A0A2I6PFM8	Proteus_phage	3.2e-35	58.3
AVG38553.1\|789919_790426_+	hypothetical protein	NA	NA	NA	NA
AVG38554.1\|791359_791584_-	hypothetical protein	NA	NA	NA	NA
AVG38555.1\|791681_791900_-	hypothetical protein	NA	NA	NA	NA
AVG38556.1\|791949_792642_-	DUF159 family protein	A4JX27	Burkholderia_virus	1.8e-14	33.9

DBSCAN-SWA_3

1969947 : 1978172

uncultured_Mediterranean_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG39539.1\|1969947_1970802_-	LysM peptidoglycan-binding domain-containing protein	A0A292GJG6	Xanthomonas_phage	1.4e-13	45.0
AVG43513.1\|1970819_1971509_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	9.4e-32	45.8
AVG39540.1\|1971628_1972387_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.4e-66	50.8
AVG39541.1\|1972575_1973217_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
AVG39542.1\|1973267_1974299_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.9e-93	52.3
AVG39543.1\|1974407_1975700_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	4.3e-62	35.1
AVG39544.1\|1975910_1976927_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
AVG39545.1\|1977097_1977472_+	thioredoxin	V9SJ74	Achromobacter_phage	1.9e-10	27.8
AVG43514.1\|1977584_1978172_-	DUF1949 domain-containing protein	A0A1X9I5T8	Streptococcus_phage	3.2e-20	33.3

DBSCAN-SWA_4

2475721 : 2522622

Burkholderia_phage(14.29%)

portal,head,protease,terminase,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG39963.1\|2475721_2477020_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.8e-130	54.1
AVG39964.1\|2477121_2477775_-	ATP-dependent Clp endopeptidase, proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	3.4e-55	56.7
AVG39965.1\|2477779_2479090_-	trigger factor	NA	NA	NA	NA
AVG39966.1\|2479259_2480015_-	peptidase	NA	NA	NA	NA
AVG43539.1\|2480277_2480826_+	TIGR00645 family protein	K4K6D8	Caulobacter_phage	2.3e-20	32.6
AVG39967.1\|2480945_2481152_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	8.1e-16	59.7
AVG39968.1\|2481481_2482045_-	DUF924 domain-containing protein	A0A1V0SIY0	Klosneuvirus	1.0e-15	34.3
AVG39969.1\|2482276_2482480_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	7.3e-17	63.6
AVG39970.1\|2482854_2483175_-	hypothetical protein	NA	NA	NA	NA
AVG39971.1\|2483268_2483667_-	hypothetical protein	NA	NA	NA	NA
AVG43540.1\|2483792_2484092_+	DUF2513 domain-containing protein	NA	NA	NA	NA
AVG39972.1\|2484112_2484385_-	hypothetical protein	NA	NA	NA	NA
AVG39973.1\|2484483_2484870_-	enamine deaminase RidA	NA	NA	NA	NA
AVG39974.1\|2484894_2486052_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA
AVG39975.1\|2486150_2487056_+	LysR family transcriptional regulator	NA	NA	NA	NA
AVG39976.1\|2487062_2487461_-	RidA family protein	NA	NA	NA	NA
AVG39977.1\|2487535_2488726_-	MFS transporter	NA	NA	NA	NA
AVG39978.1\|2488819_2489404_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AVG39979.1\|2489522_2490965_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	8.0e-09	27.4
AVG39980.1\|2491059_2491368_+	hypothetical protein	NA	NA	NA	NA
AVG39981.1\|2491387_2493034_-	MCE family protein	NA	NA	NA	NA
AVG39982.1\|2493204_2493690_+	N-acetyltransferase	NA	NA	NA	NA
AVG39983.1\|2493714_2494023_-	carbohydrate isomerase	NA	NA	NA	NA
AVG39984.1\|2494089_2494947_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	3.3e-50	42.1
AVG39985.1\|2495039_2495603_-	cytochrome b	NA	NA	NA	NA
AVG39986.1\|2495680_2496370_-	methyltransferase	G3MA03	Bacillus_virus	7.5e-13	41.3
AVG39987.1\|2496585_2497299_-	aquaporin Z	A0A1B1ISL4	uncultured_Mediterranean_phage	4.1e-06	50.0
AVG39988.1\|2497531_2497924_-	glyoxalase	NA	NA	NA	NA
AVG39989.1\|2498035_2498365_-	hypothetical protein	NA	NA	NA	NA
AVG39990.1\|2498407_2498737_-	cupin	NA	NA	NA	NA
AVG39991.1\|2499256_2499475_+	hypothetical protein	NA	NA	NA	NA
AVG39992.1\|2499588_2499813_+	hypothetical protein	NA	NA	NA	NA
AVG39993.1\|2500015_2500282_-	hypothetical protein	NA	NA	NA	NA
AVG39994.1\|2500265_2500763_-	hypothetical protein	A0A2H4JFP9	uncultured_Caudovirales_phage	7.4e-47	63.1
AVG39995.1\|2500765_2501209_-	hypothetical protein	A0A0A1IVG1	Pseudomonas_phage	1.4e-09	35.3
AVG39996.1\|2501303_2505056_-	host specificity protein J	Q3HQU5	Burkholderia_phage	4.5e-261	48.4
AVG39997.1\|2505052_2505664_-\|tail	tail assembly protein	C7BGD3	Burkholderia_phage	8.3e-56	55.7
AVG39998.1\|2505667_2506444_-	hydrolase Nlp/P60	Q3HQU3	Burkholderia_phage	4.9e-61	45.1
AVG39999.1\|2506446_2507175_-\|tail	phage minor tail protein L	A0A2R3UA90	Siphoviridae_environmental_samples	9.8e-72	55.6
AVG40000.1\|2507488_2507779_-	hypothetical protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	3.1e-21	56.8
AVG40001.1\|2507775_2510280_-	hypothetical protein	A0A0B5A596	Achromobacter_phage	3.5e-20	34.8
AVG40002.1\|2510283_2510616_-\|tail	phage tail protein	A0A0S2SYI2	Pseudomonas_phage	1.9e-30	51.8
AVG40003.1\|2510615_2513660_-	hypothetical protein	A5A3Q5	Burkholderia_phage	1.3e-88	32.8
AVG40004.1\|2513663_2514098_-	hypothetical protein	K7P6I1	Enterobacteria_phage	1.7e-07	28.5
AVG40005.1\|2514389_2514806_-	hypothetical protein	NA	NA	NA	NA
AVG40006.1\|2514808_2515468_-\|tail	phage tail protein	A0A2I7RHS5	Vibrio_phage	5.0e-06	37.4
AVG40007.1\|2515529_2515874_-	DUF3168 domain-containing protein	NA	NA	NA	NA
AVG40008.1\|2515874_2516306_-	hypothetical protein	NA	NA	NA	NA
AVG40009.1\|2516211_2516535_-	hypothetical protein	NA	NA	NA	NA
AVG40010.1\|2516568_2517792_-\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	1.5e-136	61.2
AVG40011.1\|2517803_2518430_-\|head,protease	HK97 family phage prohead protease	A0A1J0GUZ0	Halomonas_phage	1.9e-60	61.6
AVG40012.1\|2518438_2519668_-\|portal	phage portal protein	A0A1J0GUY8	Halomonas_phage	2.4e-155	66.2
AVG40013.1\|2519821_2521546_-\|terminase	terminase large subunit	A4JWZ7	Burkholderia_virus	3.9e-276	79.7
AVG40014.1\|2521549_2522032_-\|terminase	phage terminase small subunit P27 family	A4JWZ6	Burkholderia_virus	1.1e-52	62.7
AVG40015.1\|2522241_2522622_-	HNH endonuclease	Q8W6N0	Burkholderia_virus	2.0e-31	60.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage