CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP011117	Pseudomonas synxantha strain LBUM223 chromosome, complete genome	3 crisprs	RT,WYL,DinG,csa3,DEDDh,PD-DExK,cas3	0	0	13	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP011117_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011117_1

101504-101609

Orphan

Consensus_repeat	Method
CAAATGTGGGAGGGGGCTTGCCCCCGATGGCGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP011117_1

>merge|CP011117|1|101504-101609|CRISPRCasFinder
CAAATGTGGGAGGGGGCTTGCCCCCGATGGCGGCCCGACAGCCGACCAGTATTTGACTGATGGTCTCGGTCCAAATGTGGGAGGGGGCTTGCTCCCGATGGCGGCC

>CP011117|1|1|101504-101609|CRISPRCasFinder
CAAATGTGGGAGGGGGCTTGCCCCCGATGGCGGCC	CGACAGCCGACCAGTATTTGACTGATGGTCTCGGTC
CAAATGTGGGAGGGGGCTTGCTCCCGATGGCGGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP011117.2\|AKA80629.1\|102200_104297_+\|Sensory-box/GGDEF-family-protein	unknown	unknown	gnl\|CDD\|236645
CP011117.2\|AKA80631.1\|105107_105563_-\|hypothetical-protein	unknown	unknown	unknown
CP011117.2\|AKA80626.1\|93753_96855_+\|Acriflavin-resistance-plasma-membrane-protein	unknown	unknown	gnl\|CDD\|182501
CP011117.2\|AKA80635.1\|109162_109660_+\|Mg(2+)-transport-ATPase-protein-C	unknown	unknown	gnl\|CDD\|224204
CP011117.2\|AKA80627.1\|96851_99959_+\|Acriflavin-resistance-plasma-membrane-protein	unknown	unknown	gnl\|CDD\|182589
CP011117.2\|AKA80636.1\|109665_110451_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369942
CP011117.2\|AKA80637.1\|111362_113351_+\|Alpha-amylase	unknown	unknown	gnl\|CDD\|200482
CP011117.2\|AKA80625.1\|92473_93757_+\|putative-Co/Zn/Cd-efflux-system-membrane-fusion-protein	unknown	unknown	gnl\|CDD\|183194
CP011117.2\|AKA80620.1\|86643_86763_-\|hypothetical-protein	unknown	unknown	unknown
CP011117.2\|AKA80633.1\|107208_108618_-\|4Fe-4S-ferredoxin,-iron-sulfur-binding	unknown	unknown	gnl\|CDD\|274278
CP011117.2\|AKA80628.1\|100087_101497_+\|Heavy-metal-RND-efflux-outer-membrane-protein,-CzcC-family	unknown	unknown	gnl\|CDD\|273830
CP011117.2\|AKA80634.1\|108803_109043_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|314397
CP011117.2\|AKA80630.1\|104351_105098_+\|Short-chain-dehydrogenase/reductase-SDR	unknown	unknown	gnl\|CDD\|180411
CP011117.2\|AKA80632.1\|105640_107050_-\|Transcriptional-regulator,-GntR-family-domain	unknown	unknown	gnl\|CDD\|224089
CP011117.2\|AKA80622.1\|88625_89531_-\|Transcriptional-regulator-of-various-polyols-utilization,-AraC-family	unknown	unknown	gnl\|CDD\|380381
CP011117.2\|AKA80623.1\|90278_91568_-\|Glycosyltransferase	unknown	unknown	gnl\|CDD\|274425
CP011117.2\|AKA80638.1\|113435_116783_+\|Trehalose-synthase	unknown	unknown	gnl\|CDD\|274140
CP011117.2\|AKA80624.1\|91726_92227_+\|Thiol-peroxidase,-Tpx-type	unknown	unknown	gnl\|CDD\|179055
CP011117.2\|AKA80621.1\|86775_86904_+\|hypothetical-protein	unknown	unknown	unknown
CP011117.2\|AKA80619.1\|85659_85908_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP011117.2\|AKA80629.1\|102200_104297_+\|Sensory-box/GGDEF-family-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	7.77563e-121
CP011117.2\|AKA80626.1\|93753_96855_+\|Acriflavin-resistance-plasma-membrane-protein	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
CP011117.2\|AKA80635.1\|109162_109660_+\|Mg(2+)-transport-ATPase-protein-C	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	4.01125e-44
CP011117.2\|AKA80627.1\|96851_99959_+\|Acriflavin-resistance-plasma-membrane-protein	gnl\|CDD\|182589	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional.	0
CP011117.2\|AKA80636.1\|109665_110451_-\|hypothetical-protein	gnl\|CDD\|369942	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal. Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.	2.54007e-14
CP011117.2\|AKA80637.1\|111362_113351_+\|Alpha-amylase	gnl\|CDD\|200482	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins. GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
CP011117.2\|AKA80625.1\|92473_93757_+\|putative-Co/Zn/Cd-efflux-system-membrane-fusion-protein	gnl\|CDD\|183194	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit.	1.15954e-145
CP011117.2\|AKA80622.1\|88625_89531_-\|Transcriptional-regulator-of-various-polyols-utilization,-AraC-family	gnl\|CDD\|380381	cd06976, cupin_MtlR-like_N, AraC/XylS family transcriptional regulators similar to MtlR, N-terminal cupin domain. MtlR is a Pseudomonas fluorescens protein that acts as a transcriptional regulator of the mannitol utilization genes. It has an N-terminal cupin domain (represented by this alignment) and a C-terminal AraC/XylS family helix-turn-helix (HTH) DNA-binding domain. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	4.05953e-38
CP011117.2\|AKA80628.1\|100087_101497_+\|Heavy-metal-RND-efflux-outer-membrane-protein,-CzcC-family	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	9.89106e-116
CP011117.2\|AKA80634.1\|108803_109043_-\|hypothetical-protein	gnl\|CDD\|314397	pfam11462, DUF3203, Protein of unknown function (DUF3203). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	1.12798e-19
CP011117.2\|AKA80632.1\|105640_107050_-\|Transcriptional-regulator,-GntR-family-domain	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	2.57367e-151
CP011117.2\|AKA80638.1\|113435_116783_+\|Trehalose-synthase	gnl\|CDD\|274140	TIGR02456, Trehalose_synthase, trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (). [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
CP011117.2\|AKA80623.1\|90278_91568_-\|Glycosyltransferase	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	1.81093e-16
CP011117.2\|AKA80624.1\|91726_92227_+\|Thiol-peroxidase,-Tpx-type	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	1.16876e-101
CP011117.2\|AKA80633.1\|107208_108618_-\|4Fe-4S-ferredoxin,-iron-sulfur-binding	gnl\|CDD\|274278	TIGR02745, iron-sulfur_cluster-binding_protein, cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.	0
CP011117.2\|AKA80630.1\|104351_105098_+\|Short-chain-dehydrogenase/reductase-SDR	gnl\|CDD\|180411	PRK06123, PRK06123, SDR family oxidoreductase.	8.92958e-119

>CP011117.2|AKA80628.1|100087_101497_+|Heavy-metal-RND-efflux-outer-membrane-protein,-CzcC-family
MGLAMLLSACAIGPDYQRPEVIEPVQFKEAQGWRQANPSDSLARGAWWELYGDRQLNDLVVRLNTSNQTVAQAEARFRQAQALVRSSRGAFYPSVDLSVGKTRASQGTGSSSASLSSSSSGIRDTLNAQLGVSWEADIWGKLRRGLEANEASAEASSADLAAMRLSQQSELVQSYLQLRVMDEQTRLLQATLDTYQRSLKMTENQYRAGVAGKDAIAQAQTQLKTTQASLIDLIWQRAQLENAIAVLIGEAPANFNLAVSKEIPALPQIPVSLPSQLLERRPDIASAERSVIAANANIGVAKAAYYPDLSLSLQGGYSSSTYEDWISLPNRFWSVGPKLAMTLFDGGQRSAEVDRTVASYDETVAKYRQTVLDGFREVENYMVQLKVLADEAVVSNEALESARESLRLTENQYKAGLIAYLDVVTVQATALSNERTVLNLLQSRLVASVQLIAALGGGWDGQTSLAEKE
>CP011117.2|AKA80627.1|96851_99959_+|Acriflavin-resistance-plasma-membrane-protein
MNLSGPFIRRPVATMLLSLAIMLLGGVSFNLLPVSPLPQIDFPVIVVSASLPGASPEVMASSVATPLERSFGSIAGITTMSSSSSQGSTRVILAFDSDRDINGAAREVQAAINASRNLLPSGMRSMPTYKKINPSQAPIMVLSLTSDVLQKGQLYDLASTILSQSLSQVPGVGEVQIGGSSLPAVRIELEPKALDQYGVALDDVRNTIANANQRRPKGSLEDAERNWQIQANDQLEKAKDYEPLLIRYQDGAALRLRDIAKITDGVEDRYNSGFFNNDSAVLLVINRQSGANIIETVRQIKAQLPALQAVLPSSVKLSLAMDRSPVIAATLHEAEMTLLIAVGLVILVVYLFLGNFRASLIPTLAVPVSLVGTFAVMYLYGFSLNNFSLMALILATGLVVDDAIVVLENISRHIDEGVPPMKAAYLGAQEVGFTLLSMNVSLVAVFLSILFMGGIVTNLFREFSITLSAAIIVSLIVSLTLTPMLCARWLKPHDKHKQTGLQRWSQKVNDRMVAGYATSLDWVLRHRRLTLLSLLLTIGLNVALYVVVPKTFMPQQDTGQLIGFVRGDDGLSFSVMQPKMEIFRQAVLKDPAVLSVAGFIGGNNGTNNAVMLVRLKPISERKISAQAVIERLRKDVPLVPGGRLFLMADQDLQFGGSRDQTSAQYSYILQSGDLAALRLWYPKVVAAMRELPELTAIDAREGRGAAQVTLIVDRDQAKRLGIDMDMVTAVLNNAYSQRQISTIYDSLNQYQVVMEVNPKYAQDPITLNQVQVITADGARVPLSTIAHYENSLADDRVSHEGQFASENIAFDMAPGVTVEQGTAAIERAIAKVGLPEDVIAKMAGTADAFAATQKGQPFMILGALVAVYLVLGILYESYIHPLTILSTLPSAGVGAMLAIYLTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERNDGMGPLESIRSACLLRLRPILMTTLAAILGALPLLLGTGDGAEMRRPLGLTIIGGLVFSQILTLYTTPVVYLYLDRARHRFNAWRGVRTDAALDTAL
>CP011117.2|AKA80626.1|93753_96855_+|Acriflavin-resistance-plasma-membrane-protein
MNLSRLFILRPVATTLSMLAIVLAGIISYRLLPVSALPQVDYPTIRVMTLYPGASPDVMTSAVTAPLERQFGQMPGLTQMASTSSGGASVLTLRFNLDINMDVAEQQVQAAINAATNLLPKDLPAPPVYNKVNPADTPVLTLAITSKTMLLPKLNDLVDTRMAQKIAQISGVGMVSIAGGQRQAVRIKVNPEALAANGLNLSDVRSLIAASNVNQPKGNFDGPTRVSMLDANDQLVSPEQYAELILAYNNGAPLRLKDVAQIVDGAENERLAAWANQNQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRVSATIIPSIAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVMLENISRYIEEGETPMAAALKGAKQIGFTLVSLTLSLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQGRFYKASGAWIDWLIEAYGRKLQWVLKHQPLTLLVAIATLGLTVVLYLVVPKGFFPVQDTGVIQGISEAPQSISFAAMSQRQQELAKIILADPAVESLSSYIGVDGDNATLNSGRLLINLKAHGQRDLSAAQVITRLQPEIDKLVGIRLFMQPVQDLTIEDRVSRTQYQFSMSSPDAELLALWSGKLVQALSQLPELTDVASDLQDKGLQVYLVIDRDAASRLGVNVATITDALYDAFGQRQISTIYTQASQYRVVLQAQSGETLGPAALNQIHVKTTDGGQVRLSSLAHVEQRQAQLAIAHIGQFPAVMMSFNLAPGVALGKGVELINQTQKDIGMPVGVQTQFQGAAQAFEASLSSTLLLILAAVVTMYIVLGVLYESYIHPITILSTLPSAAVGALLALLLSGNDLGMIAIIGIILLIGIVKKNAIMMIDFALDAERNQGLDPQTAIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVSQVLTLFTTPVIYLYFDRLGRRWRKEPQRLEPVEP
>CP011117.2|AKA80625.1|92473_93757_+|putative-Co/Zn/Cd-efflux-system-membrane-fusion-protein
MQSSPRKSRRWLFGLLVLLVIAGLCWKFWPGGAAHKDAPAGHTGKTGMARPGFGGSTGPVPVRVAPAVLGEFPVYYKALGTVTALNTINVRSRVGGELMKIAFEEGQMVKAGDLLAEIDPRSYQNALLQAQGTLLQNQAQLKNAQVDVERYRGLYAQDSIAKQTLDTAEALVLQYQGTVKTNQGAVDDAKLNLEFTKIRAPISGRVGLRQLDVGNLVAANDTTALAVITQTQPISVAFTLPENTLETVLARYHAGNKLPVEAWDRGDTKKQAVGVLQSLDNQIDVTTGTLKFKARFDNKDQALFPNQFVNVHLLADTLHNVVLAPSAAIQFGNTGTFVYKLDGDNKVKVQPLVLGDTDGDNTVIKEGLVAGDRVVLEGTDRLKDGSEIEVVNDSSEVPTTPTEHLQGKPAAKGETGADAGKAQKVGS
>CP011117.2|AKA80624.1|91726_92227_+|Thiol-peroxidase,-Tpx-type
MAQVTLKGNPVQVEGELPKVGAKAADFTLTAGDLSNATLATFAGKRKVLNIFPSVDTPTCATSVRKFNAQANDVANTVVLCISSDLPFAQARFCGSEGLENVKNLSDFRNADFAVDYGVSIADGPLQGLTARAVVVLDENDNVLHSELVKEIAEEPNYDAALAVLK
>CP011117.2|AKA80623.1|90278_91568_-|Glycosyltransferase
MNQPATKVLVIGYVWPEPRSSAAGGHMMQILESFLTQGWDITFSSPATIGEHKADLPALGIAECAIELNNSSFDDFIRELAPDIVLFDRFMMEEQFGWRVEQCCPNALRVLETSDLQSLRDARHQRFKEQVKANPDSDDFSALFAPALEDEFQRMADTDLAKREIAAIYRCDISLMISDVEIRLLTEQFKVPAALLHWCPLMLQPPTAAFAPFEDRAHFLSIGNFRHAPNWDAVLWMKQSLWPLIRQQLPGAQLHIYGAYTPPRATALHNPAQGFHVMNWAEDALQVMTAARICMAPLRFGAGIKGKLIDAMLCGTPNVTTPIGAEAMGDDQPWPGALEHNAPALAAAAVALYQDREGWTQAQERGRQLLARRYDQAFHGPALVECLERCRRNLAAHRRDNFTGSMLRHHAHKSTQYMSQWIEAKNRNI
>CP011117.2|AKA80622.1|88625_89531_-|Transcriptional-regulator-of-various-polyols-utilization,-AraC-family
MTRATRITDPSYELMDDHNGLSIIYRQHGFPCPLVRWHFHKEYELHLIVASSGKVFIGDYIGNFYPESLFLTGPNLPHNWISQVEEGEVVPKRDMLVNFTDELFEQGSHTFAELKSLAPLLERAQYGIEFRSKKTIAQAMALMQRIEEAQGMARLGHFFILLEVLSACDDYQLLSGVTTPQQADEHSIDRTNRAVDYIFAHYARDLPLEEVAEYLGMKPTYFSRVFKQATGRTFIEFVNRLRISKSCELLADGDKAVTDVCFESGFNNISNFNRRFQQLKGMTPSHYRRLAVQRLTEQNLA
>CP011117.2|AKA80621.1|86775_86904_+|hypothetical-protein
MEVINLNYRRIKFEYTQQRRSEGASAGKISGGWDRATDKPFA
>CP011117.2|AKA80620.1|86643_86763_-|hypothetical-protein
MISTLPTYSGHQNILKNDIHIFKLFTSSAMYADGHCLDL
>CP011117.2|AKA80619.1|85659_85908_-|hypothetical-protein
MIKPTPNPPIDPAPSVLFTVKDGISTQDLLVNLSESLASAHALTCDFAFELDGSRREGALGIAQLIEVSRLLAERVLADIER
>CP011117.2|AKA80629.1|102200_104297_+|Sensory-box/GGDEF-family-protein
MLIGSYSTSLVVISLCVAVLASYTALDLAGRIATAKGRAVYLWISGGALAMGVGVWSMHFIGMLALRLPFALGFDLGITALSLLIAMLSSGFALWLVSQPRLPAWQLAFGALIMGAGIASMHYTGMAAMRMTPGIDYDPTLFGASLLIAVVASGAALWIAFNLRRNTPYVRLARGGAAVVMGVAIVGMHYTGMAAARFADDSFCGAALTGLSGRGLDNLVLVTSLAVLVIALLTSLLDARLEARTAVLADSLTLANRELTHLALHDMLTGLPNRTLLADRIQQGIQAVNERGGCFALMFIDLDGFKPVNDAFGHHMGDQLLREVGLRLREDLRSQDTLARIGGDEFVLLVQLTQPDDAMGLAERQVGLINRTFKVAEHELNISASIGIALFPGNGSSPQELLMNADAAMYHAKGMGKNGYSFFDVSMNTNARKQLQLLQDLRNALEHGQFRLYYQPKFDAVSGIAVGAEALLRWEHPQQGLLLPATFIALAEKTGLIIPIGEWVLNEACRQMSLWYAQGYESWRIAVNLSALQFCHAGLVNSVAAALERHQLPANSLTLEITETTAMSDADASMTVLQQLSDMGVDLSIDDFGTGYSSLMYLKRLPANELKIDRGFVRDLEHDSDDAAIVSAIVALGQALGLRIVAEGVETNVQQDFLTRLGCDSLQGYLLGHPLPADSFMADIRSAEQTVAPDKSYE
>CP011117.2|AKA80630.1|104351_105098_+|Short-chain-dehydrogenase/reductase-SDR
MDKVVIITGGSRGIGAETALLAAREGYRICINYQSDEKAAHAMLEQVRGLGAQAIAVRADVSSEDEVIALFNRVDAELGRVTALVNNAGTVGHKSRVDEMSEFRLLKIMKTNVLGPILCAKHAVLRMSPRHGGQGGSIVNVSSVAARLGSPGEYVDYAASKGALDTFTLGLSKEVAGEGIRVNAVRPGYIFTDFHALSGDPDRVSKLESGIPMARGGRPDEVAEAIIWLLSDKASYATGTFLDLGGGR
>CP011117.2|AKA80631.1|105107_105563_-|hypothetical-protein
MRINMLPASTAYQLGEGRPENNWLAVPAAPEEPPFADRRSARQIINANPGLKHLLRRRDSYPVTDLLKRQLGDWTSANPDAKARARAAYNLARVINVLDNVNDRRVGNSERHDGKINGFYNAGYSTRKNSEARLLVAFAQDGYDVLQSLGR
>CP011117.2|AKA80632.1|105640_107050_-|Transcriptional-regulator,-GntR-family-domain
MKRYEKFADDIAELIRSGVLGPGQRVPSVRYASQTYGVSPSTVFQAYYLLERRGLIRARPRSGYFVNTHAPSPFSEPVVSEQVHESTNVDVSELVFSVLDSIKDPNTVPFGSAFPSPMLFPLPRLARSLASASREMDPRLVVTDMSPGNPQLRRQIALRYMVGGLMLPMEELLITNGALEALNLCLQAVTEPGDLVAIEAPAFYACLQVLERLKLKAVEIPVHPRDGIDLDALAQCLERYPIKACWTMTSFQNPMGATLPEAKKQALVELLRSHQVPLIEDDVYAELYYGQQAPKPAKAFDTEGLVMHCGSFAKSLAPGYRVGWVAAGRFAQKVERLKLMTSLCPSMPAQAAIADYLQHGGYDRHLRKLRYALEEQQSAMLAAIARYFPTQTRVSQPAGGYFLWLELPEQTDSLKLFQMALAQGISIAPGPIFSATRRFSNCIRLNYGSPWTEASEKAMETLGRIVRSF
>CP011117.2|AKA80633.1|107208_108618_-|4Fe-4S-ferredoxin,-iron-sulfur-binding
MSERIPTVETFEPNHPKKVKAKSSDNLIHTRSFTGVFRTLRVGGAGLLFLAFFGTVWLNWGGRQAVLWDLAESKFHIFGATFWPQDFILLSALLIICAFGLFAITVFAGRVWCGYTCPQSSFTWLFMWCEKVTEGERNQRIKLQAAPWSLNKLARRSAKHTLWLGISVLTGLTFVGYFTPIRPLATELLTWQMGGVSLFWVLFFTGATYINAGWLREAVCMHMCPYARFQSVMFDKDTLTISYDAARGERRGPRKREVQPADVGLGDCIDCQLCVQVCPTGIDIRDGLQMECIGCAACIDACDSIMDKMGYARGLVSYTSEHQLQGGKTHLLRPRLIGYSAVLLVMIAALVVALVERPMVSLDVTKDRGMFRENSQGLIENIYSLKVINKTQQRQDYRLELVDADSFQLQGKTQVSLAPGEIVDVPVSVALLADKPVSSSQTIRFKVTDVDEPWIYSAADSRFVAPLNR
>CP011117.2|AKA80634.1|108803_109043_-|hypothetical-protein
MSVRIENHLCYFTLDETGQEQSLPATRVNILTDNEKAMSYVELAGQQIYITEAEADALTVEGARDGRNHVKADKPGSVI
>CP011117.2|AKA80635.1|109162_109660_+|Mg(2+)-transport-ATPase-protein-C
MDAWWHQVWQTLQAEFADIGDARQLTQITVRLLIAALLGGILGFEREQKGKAAGVRTHMLVALGAALFVLVPQVSGSQADAMSRVVQGVIAGIGFLGAGTILKGKEDEEGQHVKGLTTAAGLWMTAAIGVAAGMGRESTAVLSTLLALMVFSVMPRVVKLLDKNE
>CP011117.2|AKA80636.1|109665_110451_-|hypothetical-protein
MLREPNSQETAQKLAEIRSLLSKENVKSMLQGPNADEARKLITEVKERLGQSSLQKIHDQSSHIERPGLSPQEIRDRTASSDPEESFSQSMQVFDELRVEESYAKQRVRQSTPLASALFEIGKEVDLGEPTPQPDNSSAEADSLKPDNNNNNNNNNNSNDSRIDIGQTFTFHSTRDSNFDAPKEVMDFDHNRDKLDVTAIRNQLGNKPLKLVENFSGASGEVQVHYNPANNTSVVMISGNPGEPPFVVKVFGEVRYSNLST
>CP011117.2|AKA80637.1|111362_113351_+|Alpha-amylase
MTAETLAPEDSVLPLSQALLLPRIAIESTMPVIDNGEFAVKAVVGQRINVTSKVFADGHDKLAVLIRWRAREDESWHSVVMNDVGNNGWEGAFSVAQQGPHQYCIEAWIDTFASFCYELRKKHEAGVPVSLELQEGRSLVLQAAERSDNELRDRLMLLHHELSGLLETEQVALFLHENSAHLMTQADHRAYLSVSPVYPIDVEREAAQFASWYELFPRSITDDPARHGTFNDVHSRLSMIHDMGFDVLYFPPIHPIGRSHRKGKNNSLTAGPDDPGSPYAIGSEEGGHEAIHPQLGSRDDFRRLVKAAADHGLEIALDFAIQCSQDHPWLKQHPGWFNWRPDGTIKYAENPPKKYQDIVNVDFYAADAIPGLWTELRDIVVGWVEEGVKTFRVDNPHTKPLPFWQWLISDVRAKYPEVIFLAEAFTTPAMMARLGKVGYSQSYTYFTWRNTKAELSEYLTQLNQSPWRECYRPNFFVNTPDINPGFLHQSGRPGFLIRAALATMGSGLWGMYSGFELCEAAPVPGKEEYLDSEKYEIRPRDFTAPGNIIAEIAQLNRIRRQNPALQTHLGLKLYNAWNDNILYFGKRSEDGSNFILVAVNLDPFNAQEAHFELPLWEMGLPDDAQTQGEDLMNGHRWTWYGKTQWTRLEPQMPFGIWRITVS
>CP011117.2|AKA80638.1|113435_116783_+|Trehalose-synthase
MAKKPKAATFIKDPLWYKDAVIYQVHVKSYFDSNNDGIGDFPGLIAKLDYIADLGVNTIWLLPFYPSPRRDDGYDIAEYRGVHSDYGTMADAKRFIAEAHKRGLRVITELVINHTSDQHPWFQRARKAKPGSAARDFYVWSDDDQKYDGTRIIFLDTEKSNWTWDPVAGQYFWHRFYSHQPDLNFDNPQVMKAVLSVMRYWLDLGIDGLRLDAIPYLIERDGTNNENLAETHDVLKQIRAEIDAHYPDRMLLAEANQWPEDTQLYFGDRKGDDGDECHMAFHFPLMPRMYMALAQEDRFPITDILRQTPEIPANCQWAIFLRNHDELTLEMVTDRERDYLWNYYAADRRARINLGIRRRLAPLMERDRRRVELLNSLLLSMPGTPTLYYGDEIGMGDNIYLGDRDGVRTPMQWSIDRNGGFSRADPASLVLPPIMDAQYGYQSVNVETQAQDPHSLLNWTRRMLAVRKQSKAFGRGSLKMLSPTNRRILAYTREYTGEDGRSEIILCVANVSRSAQAAELDLSAFAGMVPVEMLGGNAFPPIGQLNFLLTLAPYGFYWFVLAAENQMPSWHVEPAQSMPDFTTLVLKKRMEELLEEPCRTSLEQTSLPAWLPKRRWFAGKDTAIDSVHIAYGVRFGDPQHPVLLSEIEVTSGGQVSRYQLPLGFLGEDQFTSALPQQLALARVRRTRQVGLVTDAFSLEQFIREVIQAMQAGTVLSSVEGDLRFESTQHLAGLQLGSESPVRYLSAEQSNSSVVVGESLVLKLIRKVSAGVHPELEMSAYLTAAGYPNISPLLGSMSRRDGQGQDNLLMIAQGYLSNQGDAWSWTQNNLERAIRDELAEAISEQEQHYNALGELADFAGLLGQRLGEMHLVLGAPTADKAFKPELTTAKDTQAWAKDVGAQIDRALQLLKLHQSQLNPADQALVSELLAQKKAIAGHVQALAKATLGGLRLRVHGDLHLGQVLVVKGDAYLIDFEGEPARPLHERRGKHSPYKDVSGVLRSFDYAAAMALNVQGVDHSPEADNARKRVTDRYLNEARQAFTQAYQAATATLAHDWQDAKGQDAALTLFSLEKAAYEVAYEAENRPTWLPVPLQGLHGLLSGLTPKSKPVRGGETS

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Crispr_ID: CP011117_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011117_2

3356953-3357087

Orphan

Consensus_repeat	Method
CCTACGAAATAAAGTCTGTCGGA	PILER-CR

2 spacers

The CRISPR arrays of CP011117_2

>merge|CP011117|2|3356953-3357087|PILER-CR
CCTACGGAATAAAGTCTGTCGGATCGAGCCCAGCAATTACTGGGATTAGCCGACGGGCTAATCAGAAATAAAGTCTGTCGCATCCCGCATTTTTTAAGGCCTTACCGTGTGACCTACTAAATAAAGTCTGTCGGA

>CP011117|2|1|3356953-3357087|PILER-CR
CCTACGGAATAAAGTCTGTCGGA	TCGAGCCCAGCAATTACTGGGATTAGCCGACGGGCTAATCA
GAAATAAAGTCTGTCGCATCCCG	CATTTTTTAAGGCCTTACCGTGTGACCTAC
TAAATAAAGTCTGTCGGA

Protein	Signature genes	Signature genes Name	Protein_function
CP011117.2\|AKA83561.1\|3363560_3364835_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368573
CP011117.2\|AKA83548.1\|3344520_3346395_-\|putative-cadmium-transporting-ATPase	unknown	unknown	gnl\|CDD\|225127
CP011117.2\|AKA83554.1\|3353108_3354359_+\|Ser/Thr-and-Tyr-protein-phosphatase-(dual-specificity)	unknown	unknown	gnl\|CDD\|350376
CP011117.2\|AKA83565.1\|3370717_3371704_-\|Cell-division-protein-FtsH	unknown	unknown	gnl\|CDD\|223540
CP011117.2\|AKA83549.1\|3346403_3347438_-\|HflK-protein	unknown	unknown	gnl\|CDD\|259802
CP011117.2\|AKA83557.1\|3355423_3356356_+\|Phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|226955
CP011117.2\|AKA83563.1\|3366336_3368043_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379050
CP011117.2\|AKA83559.1\|3359955_3360501_-\|Nucleoside-5-triphosphatase-RdgB-(dHAPTP,-dITP,-XTP-specific)	unknown	unknown	gnl\|CDD\|238285
CP011117.2\|AKA83550.1\|3347434_3348427_-\|HflC-protein	unknown	unknown	gnl\|CDD\|259803
CP011117.2\|AKA83558.1\|3359164_3359734_-\|SIR2-family-protein	unknown	unknown	gnl\|CDD\|238697
CP011117.2\|AKA83566.1\|3375579_3376863_-\|Transposition-protein,-TnsC-related-protein	unknown	unknown	unknown
CP011117.2\|AKA83555.1\|3354372_3354792_+\|hypothetical-protein	unknown	unknown	unknown
CP011117.2\|AKA83556.1\|3354801_3355422_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
CP011117.2\|AKA83560.1\|3360512_3361562_-\|Adenosine-deaminase	unknown	unknown	gnl\|CDD\|236480
CP011117.2\|AKA83564.1\|3368265_3370692_-\|putative-serine-protease	unknown	unknown	gnl\|CDD\|173793
CP011117.2\|AKA83562.1\|3364913_3366344_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350690
CP011117.2\|AKA83567.1\|3376924_3378958_-\|Tn7-like-transposition-protein-B	unknown	unknown	unknown
CP011117.2\|AKA83551.1\|3348439_3350365_-\|Membrane-protease-subunit,-stomatin/prohibitin	unknown	unknown	gnl\|CDD\|259802
CP011117.2\|AKA83552.1\|3350675_3351299_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|223632
CP011117.2\|AKA83553.1\|3351309_3353058_+\|Putative-lipase-in-cluster-with-Phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|371922

Protein	Function_ID	Function_description	E-value
CP011117.2\|AKA83561.1\|3363560_3364835_-\|hypothetical-protein	gnl\|CDD\|368573	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family. Amidase_YiiX is a family of permuted papain-like amidases. It has amidase specificity for the amide bond between a lipid and an amino acid (or peptide). From the structure, a tetramer, each monomer is made up of a layered alpha-beta fold with a central, 6-stranded, antiparallel beta-sheet that is protected by helices on either side. The catalytic Cys154 in UniProtKB:Q74NK7, Structure 3kw0, is located on the N-terminus of helix alphaF. The two additional helices located above Cys154 contribute to the formation of the active site, where the lysine ligand is bound.	1.29393e-11
CP011117.2\|AKA83548.1\|3344520_3346395_-\|putative-cadmium-transporting-ATPase	gnl\|CDD\|225127	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism].	5.11076e-177
CP011117.2\|AKA83559.1\|3359955_3360501_-\|Nucleoside-5-triphosphatase-RdgB-(dHAPTP,-dITP,-XTP-specific)	gnl\|CDD\|238285	cd00515, HAM1, NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides such as XTP to XMP and ITP to IMP, but not the standard nucleotides, in the presence of Mg or Mn ions. The enzyme exists as a homodimer. The HAM1 protein may be acting as an NTPase by hydrolyzing the HAP triphosphate.	4.15284e-43
CP011117.2\|AKA83565.1\|3370717_3371704_-\|Cell-division-protein-FtsH	gnl\|CDD\|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	6.30891e-41
CP011117.2\|AKA83549.1\|3346403_3347438_-\|HflK-protein	gnl\|CDD\|259802	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	9.10056e-56
CP011117.2\|AKA83557.1\|3355423_3356356_+\|Phosphatidate-cytidylyltransferase	gnl\|CDD\|226955	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only].	4.05007e-144
CP011117.2\|AKA83563.1\|3366336_3368043_-\|hypothetical-protein	gnl\|CDD\|379050	pfam13175, AAA_15, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	3.10935e-13
CP011117.2\|AKA83550.1\|3347434_3348427_-\|HflC-protein	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	5.29894e-67
CP011117.2\|AKA83558.1\|3359164_3359734_-\|SIR2-family-protein	gnl\|CDD\|238697	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.	1.17623e-29
CP011117.2\|AKA83554.1\|3353108_3354359_+\|Ser/Thr-and-Tyr-protein-phosphatase-(dual-specificity)	gnl\|CDD\|350376	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases. This subfamily is composed of uncharacterized bacterial and plant dual-specificity protein phosphatases. DUSPs function as a protein-serine/threonine phosphatases (EC 3.1.3.16) and a protein-tyrosine-phosphatases (EC 3.1.3.48).	2.39684e-48
CP011117.2\|AKA83556.1\|3354801_3355422_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	1.24599e-33
CP011117.2\|AKA83560.1\|3360512_3361562_-\|Adenosine-deaminase	gnl\|CDD\|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	1.05148e-53
CP011117.2\|AKA83564.1\|3368265_3370692_-\|putative-serine-protease	gnl\|CDD\|173793	cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.08639e-72
CP011117.2\|AKA83562.1\|3364913_3366344_-\|hypothetical-protein	gnl\|CDD\|350690	cd17932, DEXQc_UvrD, DEXQD-box helicase domain of UvrD. UvrD is a highly conserved helicase involved in mismatch repair, nucleotide excision repair, and recombinational repair. It plays a critical role in maintaining genomic stability and facilitating DNA lesion repair in many prokaryotic species including Helicobacter pylori and Escherichia coli. UvrD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	9.15703e-09
CP011117.2\|AKA83551.1\|3348439_3350365_-\|Membrane-protease-subunit,-stomatin/prohibitin	gnl\|CDD\|259802	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	4.47545e-60
CP011117.2\|AKA83552.1\|3350675_3351299_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	1.04131e-21
CP011117.2\|AKA83553.1\|3351309_3353058_+\|Putative-lipase-in-cluster-with-Phosphatidate-cytidylyltransferase	gnl\|CDD\|371922	pfam12147, Methyltransf_20, Putative methyltransferase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The family shows homology to methyltransferases.	0

>CP011117.2|AKA83557.1|3355423_3356356_+|Phosphatidate-cytidylyltransferase
MDSQTLMLFGGIGAILVIASLIGLILKLRTRGSPNAVIDNLNARINAWWVMVVVIGIAFWLGTGAVILLFYAVSFYALREFLTLTPTRRSDYPALVAAFYLALPLQYVLIYADWYGLFSIFIPVYVFLLLPILASLGGDSTHFLERASKVQWGLMIAVFCVSFVPALLTLDIPGYEGRNLLLIAYLVIVVQLSDVLQYVCGKLFGKHKIAPNLSPSKTVEGFVGGILLSSLIGAALWWTTPFNPWQSFLIALLINLLGFAGGIVMSAIKRDRGVKDWGHMIEGHGGMLDRLDSVCFAAPIFFHLVRYWWT
>CP011117.2|AKA83556.1|3354801_3355422_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MFEPVVATLITSMARTVTGARSLWLGCAPVPVQRIYFANHSSHGDFVLVWASLPQNLRKFTRPVAGSDYWNKSALRRYIINRVFNGVLIDRERREPVDNPLQPMLAALEGGDSLIIFPEGTRNLEDGLLPFKSGLYHLAKSYPQAELVPVWIANLNRVMPKGRVLPLPLLCTTSFGAPLQLEEGEDKAAFLARTRDALLALAPEHS
>CP011117.2|AKA83555.1|3354372_3354792_+|hypothetical-protein
MVASLLRSGRSLDQLSTGLTLLGVLFGLAQLLLASISTICLLLALWMIVLGLLQKYWALRVALDADLFALLARDTARTPDLDQALQTLGLQSPKRAGRPWSERRRGALKLLRKQAWLLGAQALLTLGVILASPWLPFAG
>CP011117.2|AKA83554.1|3353108_3354359_+|Ser/Thr-and-Tyr-protein-phosphatase-(dual-specificity)
MAPLFFSTYGFATWVTSQRSDVGMLVFGWETHIPFWAWTIVPYWSIDLLYGFSLLLPNTRHELKQHALRLLSAQVIAVSCFLIWPLRFTFERPELDGVFGWLFAVLAGFDKPFNQAPSLHIALLVILWVMYQRHTQGFWRWVVHGWFTLIGLSVLTTYQHHFIDLPTGALAGWLCVWLWPVEHPSPLVNARLTRDPQRWRMGVRYGLGALILAVLAFVLGDGWLWLLWPAVSLALIKANYLVLGASGFQKREDGRLTPAARWLYAPYLAGAWINSRLWTRKHPQPDLIVDNVWLGRIPTSRQQGSFKAIVDLCAELPINPQGGAYACVPVLDLIAPTPDECIKAAHAIEQLRQHGPLLVCCALGYSRSATAVAAWLLNTGRAATLDQALAIIRTARANVVLHPAHREALEGLPHAR
>CP011117.2|AKA83553.1|3351309_3353058_+|Putative-lipase-in-cluster-with-Phosphatidate-cytidylyltransferase
MREQQQHTCSTHDGVELFYRHWPATAGSGPRKAILLFHRGHEHSGRIAHLVDELGLPEFDFFAWDARGHGQSPGERGDSPSFATSARDVQTFCDHIGATYGIEEQNLAVIAQSVGAVIVATWVHDYAPKIRALVLASPAFKVKLYVPFARPGLALMRRFRGNFFVNSYVKAKFLSHDPERVASYDSDPLITKAISVNVLLGLYEAADRVVADAQAIQVPTQLLVSGSDFVVHRKPQQQFFDRLGSLKKELHILPGFFHDTLGERDRAVAVNSVKRFILQNFAHPLDRACLLDADKLGATCAESESLAAPLPRNSLRDLYWRMTRASMGLGKNLSDGVKLGFDTGFDSGSTLDYVYRNKPTGKGGLGRMIDTNYLNSIGWRGIRQRKLNVEELLRLAMAKLREDDRQVRIVDIAAGHGRYILEALQGVSPLPESILLRDYSDINVRDGGALILEKGLGDIAQFVKADAFDRADLAALEPKPTLAVVSGLYELFADNAMVGGSLAGLAEALEPGGYLVYTGQPWHPQLELIARALTSHRQGQAWVMRRRSQAEMDQLVEAAGFRKITQRVDEWGIFTVSLAQKI
>CP011117.2|AKA83552.1|3350675_3351299_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MISIYQLKPRFQNLLRPLVQRLYDNGTTANQITVLAGVISLLVGLLIAAFAQQLWLFALIPLWMIVRMALNAIDGMLAREFGQQSRLGAYLNELCDVIADSALILPFALIPGVSLAPVLLVTLLAIFSEYAGVLGPMVGASRRYDGPMGKSDRAFVLGVLATGVALGWLGAGWVESVMWLVAALLAYTLVNRVRQGLKEQQHTPPSA
>CP011117.2|AKA83551.1|3348439_3350365_-|Membrane-protease-subunit,-stomatin/prohibitin
MQVDLEADGASVEGLARFQQGLFHARRLRQAGISLTTLAISAWVLALFVALFAPLSIWPVVLINCASALLVLVAGLQSAWWVADWRAQALEAPSVELVEEPREPTTWHKGLINRFGNGLLAQVGAPVLWLGGWSLLALISVTQFWNLALPAAAVGQSASIGAALALALAFGLLVFERRLAQETAAQWPEASQLAQLSRVAIICLVISAICLLFANAESVWPLRLATLIGLLPALVALEFLLRGVLSLFSPRQPRLEPRLMAQSFTAGLLRWPPQPLLALQHELHNRFGIDLRQIWAFTYMRRAFLPVLLVVLAVGWALTGVHEVPLQGRGIYERFGKPVEVFGPGLHAVLPWPLGRVLNIENGVVHELATSVSEAATAPLAAAEGPAPLIANRLWDASHVNDKSQVIASSSGDKQGFQIVNMDVRFVYRIGLTDQAALAATYNSADIPTLIRSTASRILVHDFASRTLDELLGEQRTSLADEIGRSVQADLQTLDSGVEILATVVEAIHPPAGAANAYHGVQAAQIGAQALIARERGAASEQTNQALLQASTARDQAQANAREVNAGAQAANLRFAAEQKAYAAAGQAFVLEQYLGQLSQGLAHAKLLILDHRLGAGSAPTIDLRSFTLPADPSVPRKAVQ
>CP011117.2|AKA83550.1|3347434_3348427_-|HflC-protein
MSAHSHDHGHHHHHGHHHHHHGDEQASGPFPWRRMAWAVLLVLFAVAAASLVQVRSGEATVITRFGNPARVLLEPGLGWRWPAPFEAAIPVDLRLRTTSSGLQDVGTRDGLRIIVQAYVAWQVQGDADNVQRFMRAVQNQPDEAARQIRTFVGSALETTAASFDLSSLINTDASQVRIADFEAQLRQQIDQQLLTTYGVRVAQVGIERLTLPSVTLTATVDRMRAERETIATERTAVGKREAAQIRSAAERDARIVQADATVKAADIEAQSRVEAAQIYGRAYAGNPQLYNLLRSLDTLGTVVTPGTKIILRTDAAPFRALVDGPKDIQP
>CP011117.2|AKA83549.1|3346403_3347438_-|HflK-protein
MSERDSPDSPWIQAGRLTFLALYAVTVLAALAWAFYNVRQIDPQNRAVVLHFGALDRIQNAGLLLAWPQPFEQVVLLPAAGRVIERRVENLLRSDAALQADRVASFATPLSDALAGSGYLLTGDAGVVQLDVRVFYKVTEPYAFVLQGEHVLPALDRLVTRSAVALTAARDLDTILVARPELIGSDNGAAERRERLRGDLVQGINKRLAQLAANGLGLGVEVTRVDVQSSLPGPAVNAFNAVLTASQQADKAVANARTEAEKLTQSANQEADRQVQVAHAQASERLAKAQAQTATVASLAQVKDPGLLLRLYRERMPKILGQAGSVTTVDPKDDSRLIIQGAEQ
>CP011117.2|AKA83548.1|3344520_3346395_-|putative-cadmium-transporting-ATPase
MLTSAEQRSAARQLTLAMLALGLLVLGLVWRLLAPDQSGVSQLLLGVASLLVAVPVMRSAWYSLRFPSLHGITDQLIALAMLGAWATGDLLTAALLPIIMIFGHVLEERSVIGSQEAIHALGKLTRSHARLVHADGTITEVDNGTLNTGDIVEVRAGDRVPADGVVLSGQASLDTAPITGESVPLEAGVGVQVFGGAINLDGLLRLEVTRIGNESTLGKVIALMQNAERSKPPITRLLERYAGSYMVLVLLLAAVTWFVTNDAQAMLAVLVAACPCALVLSAPATAIAGIAVAARHGILIRSSAFLEELADLTSLVVDKTGTLTFGTLRLQSIDTTAPDRQALLNLAASLGSASSHPVSRALAGLATQEQMLALTDIRERQGLGVVAQTEQGEAALGRPELFEQLGIVTTGVPTHDGPIAGLALNGEFLAWMLLADSVKPEARQALQELRDLGLGRQLLLTGDRQSVADSLALDVGISDVEAQALPEDKLNRVLGEISSGFRPMVVGDGINDSLALKAGVVGVAMGAGGADIALASADVVLIGSDLRRLGTCVRLSRRCRQTLQVNVIIGLGWTLAIVVFAAFGWLGAAGAMIAAVLHNLSTLLVLGNAGRLLRFQEPLLKLED
>CP011117.2|AKA83558.1|3359164_3359734_-|SIR2-family-protein
MDREWHKHSTDISTSEIHRLITLGRFSRIYTTNYDRWLEMAHDKFEVPYDKIASVADLVSAAEGRRQIVKFHGDFDDESSIVLDETSYFQRLNYDSPLDIKLSNDVLGNSVLFIGYSISDINIRLLFYRLTEMWGRSALPSARLKSYVFTNRPNPVAQEVLGQWGIEMIVSEEDDPKKALTNFLQELVS
>CP011117.2|AKA83559.1|3359955_3360501_-|Nucleoside-5-triphosphatase-RdgB-(dHAPTP,-dITP,-XTP-specific)
MSGNQHKVNEVQRILSPIGVEVVSVSRKIEELQTEDVHRLVRDKLTKAFEAIGRPLFVEHTGLYLSGLNGLPAGLTQIFWDKLEAERFVKLVAGLEDAAVTAKTVLGYCDGRQIHLFEGSIEGTVPLVPAGPTDFQWDCVFVPNGHTQTFAEMGPAKDAISMRRKALDQFAEYLKTCEGVK
>CP011117.2|AKA83560.1|3360512_3361562_-|Adenosine-deaminase
MNQCQMDLATTPNGVNGHEIAHESLVLEPSECDRAELHVHMNGAIPISTIQDIFTDELTELPSGFLIERDMLRHTPCQSLASYLTPWQVLRLFPKRRENLDRLSLAVVANLAQNNVRFVELRSSVLYLAALQNCSPAQALERLLESYRAASDRFGMRLGLVLTVTRGDYSLVGLATLLQAYQDLGEPDDVVGLDLAGDEEIAYPAELPSLFRKAKDRFGLGITIHAGETGRVENVRSAVELFGADRIGHGTAASKDPHLLDLLARQDICIEVCPISNRLTGAVPVDEAHPLLEFRRHQVPFVICSDNPAIHQRGLADDHATAMTEGLSASDISEQFDVAKRYSFIEGLN
>CP011117.2|AKA83561.1|3363560_3364835_-|hypothetical-protein
MEGEMNELELRPRVFVSDLIQLGDIVLTTTPDPMSKTIRKAIGADISHAMICVGKSSVIDSTGDGVHARNLERLILEPGCAGHVLRPVAPLTTDQLHSIIAFARAAVGTRYTKIGAAKSVLAGFVAGRRQFCSRLVAQAYHRAGANLVPDADFCHPGELLNSAALFEVPNVLRDLNAEEEAGWRENVDHVQVMRDSTNVLLREARMLSSEIESLNDIDAYLVDHQEADDHLVKALRASRYLELWKDEFERNAWQYHVAFMEGYKSSAEHKQRYCEELLASEKLGQNRFVLNHAGYVTVNALHPRQYFALKIKLYELLTQLHDRRIRAATTWLERKGLLKPEPRPLLRPHTPEWFASLREWDPKQAAMTEAAIRVAGSLDVCTVCADEPVCDYVLLSVPPAGPGTCRLCDDCFHIRSIDEPMRTF
>CP011117.2|AKA83562.1|3364913_3366344_-|hypothetical-protein
MSEDLAIKLNDCTSKGYVIAPAGFGKTHLIAMAVRASSGRQLILTHTFAGVNSIKMKMANLGVRGSQYQVDTIASWALRLCLAYPKASGWKIENPTSKQWSKLYECCTRLLGKRFIREAVSSSYIGLYVDEYQDCSDLQHDLVCSLAEFLPSRILGDPLQAIFDFDDGKPVDWEASIYPEFDCLGRLEVPWRWINAKSPALGEWLKESRRKIELGQKIDLLAKLPPSVISVHTQPEYLAAKQYSALCGLLNHNESVIALHGGDQQSKNKTHLLAKSMAGRFSSIEEIEGKDLHLFLKKLAAAKTAQAGFLLALKFATKCFTGVTRTLTAGTKRGEVTNLRKTTKYPLVLQAANDYLSDQSSSYLKAFFQTLKSNPETSAYRRDLLYRFLSVLKIHVDGQATTLVEAGILYQREMRHSGRPISHRKLIGTTLLVKGLEYDHAVILDADSLDAKDLYVAMTRGAKSLTIIGTARHLPA
>CP011117.2|AKA83563.1|3366336_3368043_-|hypothetical-protein
MKIRKIVIKNFRGVKALDWNVPTADILCLIGKGDSSKSTILEAIRYTFHPQWNLALSDSDFYQCKIADPIVIEITIGHLAADFCALNKYGLHLRGWDAAAQKLHDEPDDHFESVVTARLTVEKDLEPKWTVVCDRNPDGVQFKQADRNKVGVGLIGVFSERELSWANGTALAKLTVAQSLSELLANASRTARGSLDVDRAVTLTNFDNAATKSQEIAKLLGVPVLDAYKAHLDLASINLKVGGLSLHDGEIPLRQLGLGSRRMLQCGIQKAGLEEGHITLFDELEFGLEPHRITRLIKHIREDKRGQYFLTTHSPMVLRELTVQDLHIVHSKGGVVTIVSAAEKGLEEHEVQGKIRSSAEAFLAKKVVVCEGATEVGFIRGFDDHQLENGQDPLSYHGVALLDAKGASKVKGMAIAFKKLGYDVSVLADGDAEKQFSAADAAGLVALGIPSYVWSDKLSLEERAFADLPWASVLASLTLAGVELFYSVYDQVRSQYQDVLDPDISEWRDSPKLRTAIGAAAKSAGWFKDTTRGDQWFKSVSAAFNDPVFGKTNLAVELGRLWEWAKRV
>CP011117.2|AKA83564.1|3368265_3370692_-|putative-serine-protease
MATYKHLSITREVLDNSRRTKSPPHFVTREDRLGHGQKLNGYFATAEGLAKKQIGSSDKSPYVLKLEYEGALTFANLNTHGLEFISQEGKQLCVVFASEEGLAKFTAHLQKLGVTDANLTHRQILEAIAGVDAWSAEDRKSWALKNIGLPDTLTFKLDVELWPIQVAHHPSRVQLTTSFETWLAAEHIKKLDRINLDSLLMYRVEVTPEQAQLLLNQRDVRLVDLIPATGISIQQLNRDINELPLNIPPPPNDAARVCILDSGINGNHPLLKPAMAESASFVDEEGDADEAGHGTAVAGVALYGDVEGCNNSNFWKPEFWLFNGKVMKKCPHTGNAVYDELTLEVSLTKAVEHFVELGCRIFNLSLGNNNAPYDGAHVRGLAYILDVLSRRYNILFVVSTGNFCGSESPPVPTNSWRGEYPEYLIAAQSAIIDPAPAMMVLTVGSISRHNSTIDSQKYPEIYHLSPASENQPSPFTRHGPSVKGAIKPELVAAGGNLASPMRQANAQWAPHMRGLGVLTLNHQWTGNTVFKEISGTSLAAPYITHLAGRLLNAYPTASANMLRAMLVNQAYLPDAVTSTFSEEFRKSYKKAKATWNRDVERDVAGYGVVSEADLFRSSDNVVVLMSEETIENDGCQFFELPLPEDYLRSARGTRELSITLAYSPVVRTTRIEYLATQIYYRLVTGTSLEEVQKHFSQEMKKKTEVLKEARDTNRDIPAQMRNHGTVQSSRWTFKQGKPGEKWFVVVVRQDRDWNPSAAEKEQYSLVVTVADRDNERAQLYTQIQTRINEQAVVREQQKAKMTAVRLQN
>CP011117.2|AKA83565.1|3370717_3371704_-|Cell-division-protein-FtsH
MANGKILRQLFRAGTAGDADAFRLASKAVIEEERQKQHHLLANDLEQILYGSDLNLKASSNTPRAHYDVPVDKERGLPLLDIRTPKRSLDEVILPPSSSAALEEILEENRRADVLRSYGMKPAGKVIFFGPPGCGKTLAAEVVAFELDRPLAIVRLDALMSSFLGETAANLRKVFDFIAQHPFVVLFDEFDAIGKERGDSGDHGELRRVVNAVLQMMDSYEGLSLILAATNHEKILDSAIWRRFDESIEFPLPDEKQLKEILLLKLRGIRRQFEIDDKEVLKEFKGKSGADIERVIRRAAKRMILREQEFLTIKELKSALVREDLRKS
>CP011117.2|AKA83566.1|3375579_3376863_-|Transposition-protein,-TnsC-related-protein
MQPDPVTGLEELSPGLAAERLSEVLKTIFLPNQFSLDFIKDSVDRARSFSAESFSTDQQYQRRLYHPPENEAFPICLTGLAGVGKSQTISALMKVMPGPAPYASAHYHEPHILISYWYASARGKAGGRQLLEDFLGGDATGVRANTSKLLTECRRRVNRDGVSLMMLEEMQHQSTGQGGARVTDILLTMAGLGVPMIYVANYSLGHKLLTRNSEDKQRLLSEPRVMLPDHPDSKAWKEYVLECIRVSGGRVSADPSALVHELYRWTFGIKRLAVQLIKVAYLEARAARRHTITLEDVNKAYLSAAYSSSRDDVEELIRLSVHKSKTGGRPDLRCPFPVPMPSNVLSFAKDDRALRVSEKIFVSSLTAEERKTFELLHPPGSPSNLPSKPKREKKPALPAQTREGLEDAYSRLLSESKGSPKPRGPGK
>CP011117.2|AKA83567.1|3376924_3378958_-|Tn7-like-transposition-protein-B
MITGSKLRAPEGFKGLTKDVEYYFLAGDGRANRARLVFFDEEGTTASLLTLSRPEFDLALTNGDLVECGSDATPPWLMAIQGISVDQLEKDRVRATKSYDEMVNKRYLAIAELVDHAEEILSNDNPESIINAHAANQSPSQNAARLRFWFFSYLVFGRSKWALMPKFDRCGRGKREQNADGQMLGRPPKSGRKSRSPATAEMQASILDGFIKYNDKTKSDAEIFGAVLVGEFGCVPFTTSTGNKKFYHPEGKPFPTKGQYDYYLGQAISTKAYRKARRGTSGARAKSGFVGSFSHDLVNVNQVVEFDGYNPKGKISGLLEGSAMDSACIVRGVCGQSGAVVALGFSENKETMEAYRMALFSMAISKVKFASLFGLTIRKEDWPTYGLPQNIVFDRGPGSTMGVPTRSEAVARDEMMSWLSRLELTPTHSGQSKATVESSHPRTKSDNDQPTHFHSSLNFVEICKRHILQAIYDNHASDAEGKMTPEMLDVGFSPTPHNIYKFYSDLGYDSGTEVTFDYAVREFLTPHPAHIKRSGVYFYGRKYNSSKLIDTSVFDRIALNGQIPVTAYVMTMCVRHIWIELEGVLYELDFVKPASVHPSSVDISLSDLQVLNENRLRGNAQLREEQPAILQDRNAQFLHATGKAWDSGTRKLGRPAKGGASERDAADQKRLMGKGND

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Crispr_ID: CP011117_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011117_3

6231573-6231667

Orphan

Consensus_repeat	Method
CGATGGCGGCCTGACAGCCGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP011117_3

>merge|CP011117|3|6231573-6231667|CRISPRCasFinder
CGATGGCGGCCTGACAGCCGACCGCTAACCAACGTATGCCCCGCGATCCAAATGTGGGAGGGGGCTTGCCACCGATGGCGGCCTGACAGCCGACC

>CP011117|3|2|6231573-6231667|CRISPRCasFinder
CGATGGCGGCCTGACAGCCGACC	GCTAACCAACGTATGCCCCGCGATCCAAATGTGGGAGGGGGCTTGCCAC
CGATGGCGGCCTGACAGCCGACC

Protein	Signature genes	Signature genes Name	Protein_function
CP011117.2\|AKA86100.1\|6225759_6226590_+\|Glutathione-S-transferase	unknown	unknown	gnl\|CDD\|183298
CP011117.2\|AKA86111.1\|6237934_6238807_-\|Undecaprenyl-diphosphatase	unknown	unknown	gnl\|CDD\|376891
CP011117.2\|AKA86098.1\|6223438_6224428_-\|Transcriptional-regulator,-AraC-family	unknown	unknown	gnl\|CDD\|378976
CP011117.2\|AKA86110.1\|6236865_6237819_+\|putative-dye-decolorizing-peroxidase-(DyP),-encapsulated-subgroup	unknown	unknown	gnl\|CDD\|367887
CP011117.2\|AKA86101.1\|6226649_6227576_-\|Inositol-transport-system-sugar-binding-protein	unknown	unknown	gnl\|CDD\|380524
CP011117.2\|AKA86107.1\|6234472_6234799_+\|MocE	unknown	unknown	gnl\|CDD\|131430
CP011117.2\|AKA86113.1\|6239672_6240611_-\|Transcriptional-regulator-containing-an-amidase-domain-and-an-AraC-type-DNA-binding-HTH-domain	unknown	unknown	gnl\|CDD\|227311
CP011117.2\|AKA86114.1\|6240784_6241414_+\|Transcriptional-regulator,-TetR-family	unknown	unknown	gnl\|CDD\|224228
CP011117.2\|AKA86097.1\|6222756_6223353_-\|Glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198314
CP011117.2\|AKA86099.1\|6224490_6225717_+\|major-facilitator-superfamily-MFS_1	unknown	unknown	gnl\|CDD\|182309
CP011117.2\|AKA86108.1\|6234795_6235995_+\|Ferredoxin-reductase	unknown	unknown	gnl\|CDD\|170080
CP011117.2\|AKA86106.1\|6233350_6234442_+\|putative-hydrocarbon-oxygenase-MocD	unknown	unknown	gnl\|CDD\|239588
CP011117.2\|AKA86102.1\|6227595_6228375_-\|Hydroxypyruvate-isomerase	unknown	unknown	gnl\|CDD\|226149
CP011117.2\|AKA86103.1\|6228371_6229391_-\|Myo-inositol-2-dehydrogenase	unknown	unknown	gnl\|CDD\|275173
CP011117.2\|AKA86095.1\|6220548_6221697_-\|L-arabinose-specific-1-epimerase-(mutarotase)	unknown	unknown	gnl\|CDD\|185696
CP011117.2\|AKA86109.1\|6235996_6236815_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366542
CP011117.2\|AKA86096.1\|6221836_6222604_+\|D-xylose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|212491
CP011117.2\|AKA86112.1\|6238855_6239494_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227915
CP011117.2\|AKA86105.1\|6232137_6233187_-\|Transcriptional-regulator,-LacI-family	unknown	unknown	gnl\|CDD\|380530
CP011117.2\|AKA86104.1\|6229557_6231537_+\|Sigma-54-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350

Protein	Function_ID	Function_description	E-value
CP011117.2\|AKA86100.1\|6225759_6226590_+\|Glutathione-S-transferase	gnl\|CDD\|183298	PRK11752, PRK11752, putative S-transferase; Provisional.	0
CP011117.2\|AKA86111.1\|6237934_6238807_-\|Undecaprenyl-diphosphatase	gnl\|CDD\|376891	pfam02673, BacA, Bacitracin resistance protein BacA. Bacitracin resistance protein (BacA) is a putative undecaprenol kinase. BacA confers resistance to bacitracin, probably by phosphorylation of undecaprenol. More recent studies show that BacA has undecaprenyl pyrophosphate phosphatase activity. Undecaprenyl phosphate is a key lipid intermediate involved in the synthesis of various bacterial cell wall polymers. Bacitracin, a mixture of related cyclic polypeptide antibiotics, is used to treat surface tissue infections. Its primary mode of action is the inhibition of bacterial cell wall synthesis through sequestration of the essential carrier lipid undecaprenyl pyrophosphate, C55-PP, resulting in the loss of cell integrity and lysis. The characteristic phosphatase sequence-motif in this family is likely to be the PGxSRSGG, compared with the PSGH of the PAP family of phosphatases.	6.56531e-88
CP011117.2\|AKA86098.1\|6223438_6224428_-\|Transcriptional-regulator,-AraC-family	gnl\|CDD\|378976	pfam12852, Cupin_6, Cupin. This is a family of bacterial and eukaryotic proteins that belong to the Cupin superfamily. Some of the proteins in this family are annotated as being members of the AraC family of transcription factors, in which case this domain corresponds to the ligand binding domain.	9.64937e-26
CP011117.2\|AKA86110.1\|6236865_6237819_+\|putative-dye-decolorizing-peroxidase-(DyP),-encapsulated-subgroup	gnl\|CDD\|367887	pfam04261, Dyp_perox, Dyp-type peroxidase family. This family of dye-decolourising peroxidases lack a typical heme-binding region.	2.25785e-121
CP011117.2\|AKA86101.1\|6226649_6227576_-\|Inositol-transport-system-sugar-binding-protein	gnl\|CDD\|380524	cd06301, PBP1_rhizopine_binding-like, periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily.	2.27934e-119
CP011117.2\|AKA86107.1\|6234472_6234799_+\|MocE	gnl\|CDD\|131430	TIGR02377, putative_Rieske-like_ferredoxin_MocE, Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].	6.28098e-52
CP011117.2\|AKA86113.1\|6239672_6240611_-\|Transcriptional-regulator-containing-an-amidase-domain-and-an-AraC-type-DNA-binding-HTH-domain	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	3.46765e-92
CP011117.2\|AKA86114.1\|6240784_6241414_+\|Transcriptional-regulator,-TetR-family	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.39266e-13
CP011117.2\|AKA86097.1\|6222756_6223353_-\|Glutathione-S-transferase	gnl\|CDD\|198314	cd03205, GST_C_6, C-terminal, alpha helical domain of an unknown subfamily 6 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs, including Pseudomonas fluorescens GST with a known three-dimensional structure. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Though the three-dimensional structure of Pseudomonas fluorescens GST has been determined, there is no information on its functional characterization.	7.76772e-36
CP011117.2\|AKA86099.1\|6224490_6225717_+\|major-facilitator-superfamily-MFS_1	gnl\|CDD\|182309	PRK10213, nepI, purine ribonucleoside efflux pump NepI.	1.75598e-90
CP011117.2\|AKA86108.1\|6234795_6235995_+\|Ferredoxin-reductase	gnl\|CDD\|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	4.01158e-78
CP011117.2\|AKA86106.1\|6233350_6234442_+\|putative-hydrocarbon-oxygenase-MocD	gnl\|CDD\|239588	cd03511, Rhizopine-oxygenase-like, This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.	5.08779e-140
CP011117.2\|AKA86102.1\|6227595_6228375_-\|Hydroxypyruvate-isomerase	gnl\|CDD\|226149	COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and metabolism].	5.68199e-85
CP011117.2\|AKA86103.1\|6228371_6229391_-\|Myo-inositol-2-dehydrogenase	gnl\|CDD\|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	8.71333e-117
CP011117.2\|AKA86095.1\|6220548_6221697_-\|L-arabinose-specific-1-epimerase-(mutarotase)	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	1.05566e-180
CP011117.2\|AKA86109.1\|6235996_6236815_+\|hypothetical-protein	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	2.70128e-05
CP011117.2\|AKA86096.1\|6221836_6222604_+\|D-xylose-1-dehydrogenase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.00735e-64
CP011117.2\|AKA86112.1\|6238855_6239494_+\|hypothetical-protein	gnl\|CDD\|227915	COG5628, COG5628, Predicted acetyltransferase [General function prediction only].	5.60605e-15
CP011117.2\|AKA86105.1\|6232137_6233187_-\|Transcriptional-regulator,-LacI-family	gnl\|CDD\|380530	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.	3.47073e-82
CP011117.2\|AKA86104.1\|6229557_6231537_+\|Sigma-54-dependent-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	1.63025e-156

>CP011117.2|AKA86104.1|6229557_6231537_+|Sigma-54-dependent-transcriptional-regulator
MNMDALMSLTFSVQDLEYLTALGPDALNDGPVAALEQGWRACLSGQVERPAEVRQVIWDSWRRSLEARIDPDHSHYRFVAAQALAATLANHRVLIAAAAQVMHGLLAYNPRGHINLTDAEGTTLYFCGLDITPVGSRLLESVQGTNCTGLALAEDRLMYVLAEENFAGALRQRRMHCAAAPIKDAQGLTLAMLTLTAEPGWFHFHTLGTVQAAAEAVSRQMALQVLLEEQQAVLEVLNEGLVVLDERGCIKALNRYARQLFGVGLELIGSSFQRLGRSELSDVLGEPVRDLDCTFELHDRSQLACLVSVCPLEQGGVIVSVRENRRIREITRRLIGTQARYTFDTIQGTSRAIQDALHLGRIASRGDATTLILGESGTGKELFAQAIHNASERCNGPFVAVNCGAIPRDLVQSELFGHVEGAFTGSARGGSAGKFELADGGTIFLDEIGDMSFDAQVSLLRVLQEGEVTRVGAKNSRPVDVRIIAATHRNLSQAVAEGAFREDLYYRLNVLNLTVPPLRMRREDIPLLARHFLQRCARSLRKPVQGFSPEALALLSAHGWPGNVRELENAIERATNLAMGELIQPADLPLETQQRATLRVYQPQPAQDLSSHELHAIVAALKNTGGNIRLAARQLNVSRGGLYNKMGRFGLDAGDFRGR
>CP011117.2|AKA86103.1|6228371_6229391_-|Myo-inositol-2-dehydrogenase
MSTQNIRLGLIGAGRMGSFHGLTAARHIPGACLAAIADPTPGQAARLAAELGVDKVYTDPQQLLDDPEIDGVLIAAPARSHAELVISAARAGKGIFCEKPMAITLDEADRAIAAAADARVPLQVGFNRRFAKSFRTAHLDVAAGRIGTPQLLRSLTRDPALNNPAASPQWVIFLETLIHDFDTLRYLNPGAEAVQVYVMADALIAPAYKSQGLLDTAVVTIRFDNGAIATAEANFQAVYGYDVRGEVFGSQGMLSMGSLNDCDLVRYLAEGIQADTQRMDTDLLRDAYIAELNHFVDCLRSGAKPLASGEDARAALAIARACIESYETGKSVAVQGARP
>CP011117.2|AKA86102.1|6227595_6228375_-|Hydroxypyruvate-isomerase
MMPFKLAVSAEMVFLDLPFIERVKRIHALGFSAEIWSWTDKDIDALAATGADFTSMTGYISGTLTDPEGSRQLLDSARESLGIAERLNCPSLNLHGTGLGAGGLPVQPVNQATGRMWLSACKTLEKIARLGEDASRVFLLENLNTAVDHPGTPFARADETLALIEAVGSPHLKMNLDLYHAQIGEGNLIELIQRAGSAIGEIQVADVPGRKEPGTGEIHYPAIARALHVMGYTGVVGLEGWASGTSELALERFRQAFTL
>CP011117.2|AKA86101.1|6226649_6227576_-|Inositol-transport-system-sugar-binding-protein
MHRYSLLVATLLLLFSQWTFAAYRIGVSIARVDDNFMTYVRSGLEAAAKQQDVQIQFEDAQGDVVRQLNQVEGFLNQKVDAVIVLPVDTAATANITRAAVAAKTPLVYVNRHPDERTLPKGVVTVASNDIEAGQLQMRYLAEKLGGQGNVAIIMGDLAQNATHDRTEGARQVLKDFPGIKIVEQQSAEWQRNKGMDLTSNWLLAGTQFDAIVANNDEMAIGAAMALQQAGKAKGQIAIVGIDGLPDGLAAIKRGLLAASVFQDPKAQATQAVQAAIKMIKGEPIEAEVWVPFELIKPEQVAVFEQRYK
>CP011117.2|AKA86100.1|6225759_6226590_+|Glutathione-S-transferase
MADYLPPKVWTWDTESGGTFASINRPIAGATHDKELPIGKHPLQLYSLATPNGQKVTILLEELLALGHTGAEYDAWLIKIGDGDQFGSGFVAVNPNSKIPALMDRSGATPIRVFESGAILQYLAEKFGAFLPSEPAARAECLSWLFWQMGSAPYLGGGFGHFYAYAPSKMEYPINRFAMEAKRQLDVLDKRLAVSEYIAGDEYTIADIAIWPWYGGLVKGRLYGDSAEFLSVHEYKHVLRWADAIDARPAVQRGRRVNRVSGEEQLPERHDASDLD
>CP011117.2|AKA86099.1|6224490_6225717_+|major-facilitator-superfamily-MFS_1
MSEYAAQAPAGVVTEPAWLAVFSLAMGVFGLLTAEYLPASLLTPMALDLGVSEALAGQAVTVTAVVALFAGLLVPGLTRSIDRRVVLLGFSTLMIASNLLVALSSSLTVLLLMRILLGIALGGFWSMAAAVAMRLVPAASLPRALSIIFSGIAAGTVVAVPLGSYLGGLYGWRSAFIAAAAVGAVTLAFQAFTLPRLVPNGTARLRTVLEVLLRPGIAMGMFGCVLVHTAHFALFTYIRPFLESTTGVDTQGLALMLLGFGVANFVGTLLAGWLLVRHPRGTLVLMPVLVGIAALALVWLPVSLPGQALLLALWGMAFGGVPVAWSNWVARAVPDQAESAGGMVVASVQSAIAAGAAGGGLMFSVSGIGGVFVGAGVLMLLAALLIALRVQVPRQDRDAGVTHHPSLV
>CP011117.2|AKA86098.1|6223438_6224428_-|Transcriptional-regulator,-AraC-family
MMQTLEFLTETPTMTAADAFTLSSDLINELLRGMRLRGVQYRRIQAGPTFGMGFGAKPGHAYFHFLAAGHVTLRGEDGDLFELSAGNAVFIAHGGAHALLSDASIDVQDIGDFDSAPLGDAVCAVDASPETVPSTLLFSACMEFELGSIQGLGNLMPALMLIDAGGQRYPGLMPILAVMEREVSTARIGFAGILARLADVVAAMIVRGWVECACGNASGLVAALRDPRLARALLALHQQPGRDWSVAELAAQCHTSRSVFADRFQAILGIPPLRYATELRMRLASQWLTLERMPIETVAQRLGYTSQAAFSRAFKRITGQPPGAARSSM
>CP011117.2|AKA86097.1|6222756_6223353_-|Glutathione-S-transferase
MKLVGMLDSPYVRRVAISLDLYGVEFVHEPLSVFSTFAEFAQINPVVKAPTLVLEDGTVLMDSSLILDYLETLAPADKKLLPQQPATRAHDLHLLGLALAACEKSVQIVYEHNLRPAEKLHAPWLERVSGQLLAAYALLDKQLGDSEALTQASITAAVAWSFSQFTVASVVKADAFPNLKRHAERLEQHPAFKRYPIA
>CP011117.2|AKA86096.1|6221836_6222604_+|D-xylose-1-dehydrogenase
MTTQQAIYPDLKDKTVLISGGASGIGEFMVRAFAAQGAKVGFVDRAQSQGERLAALLNSQGFTVEFECCDITDEIGYRAAIGRFEQSLGPITVLVNNAANDVRHSLEEIDSQMFDQLIAVNLKHAFFAAKAVVPMMKEAGGGSIINLGSVGWMMASAGYPVYAASKAAAHGMTRGLARELGPSHIRVNTLVPGWVMTEKQLAMWVDDAAKELIARSQCLPGSVMPEHIANMALFLASDASAMCSAQNFIVDGGWV
>CP011117.2|AKA86095.1|6220548_6221697_-|L-arabinose-specific-1-epimerase-(mutarotase)
MKHPRYLLSGLALSMLVASGGTQAAGLTSEHKPFGKTNDGTAVEQYILRNSHGMQATVITYGGVLQSLKVPDKHGKVDDVVLGFDDVQGYQAGTAFFGATIGRFGNRLAGGAFELDGKRYQVPLNDGPNSLHGGAQGFDKQVWQAQPVKDKDSVGVTLTYLSKDGEMGFPGNLKTEVTYRLNDNNELHIDYKATTDKPTVLNLTNHSYFNLAGAGNGDILKQVATLHASHYTPVNATLIPTGELAPVKDTPMDFLKPTPIGQHIKADHPQLKFAEPKQGGFDFNWALDTKGDIKQLAADVHDPESGRRLQLYTSEPGVQFYTSNFLDGSVKGKGGKTYQHWSGFTLETQHFPDAPNQPGFASTRLNPGQTYTQHTLFKFSAD
>CP011117.2|AKA86105.1|6232137_6233187_-|Transcriptional-regulator,-LacI-family
MHNHKRPTIATVAAHAGLSVATVDRVLNARAPVNPSTAEQVFQAAEAVGYFAARLIGQRIRERRPTYRFGVLLLGTAQAFYANLAQSISDAAQHHATANLSCQFDYINDRSPNAIVAQIEQLAVQCDALAVVSFAHPLINACLAQIREAGVPVVALLSDIHEQALEPYVGQDNHVVGRTMGWLLAHTCGARKGSVGILLGGHRFLGHQARVKGLHSYLAEHAPGLKPLEPLINLDNCDITEEATLDLLARHTDLRGLCVVGGGGDGVINALAQLPKRPALCCILQESTELSRQALSRGLIDVVMDSQPRQTAAALVQLLVQLLNDEGFDPVRHRVHIPPQIVTPENMGT
>CP011117.2|AKA86106.1|6233350_6234442_+|putative-hydrocarbon-oxygenase-MocD
MPEHTAYRARRDYSLTGPEAARAAEKGLVSANWYQSPISRKRMKELMQRRDGPALLDTAIWVSTLLVTGFGGYWFWGSWACVPFFLAYGVLYGTASNPRWHETGHGTAFKTRWMNDGLYQVASFMCLFEPHVWRWSHARHHTDTIVVGRDPEIVEPRPPSLWMMALSLFNLPLAWKTFSGVARHAAGRMSAQEQDFIPESEWPKVFRAARIWIGIYALIIGTALYLHSWLPLMLVGLPSLYGAWLGYVFGLSQHVGLAEDVLDHRSNCRTIYMNRVLRFIYMNMNYHLEHHMYPMVPYHALEQLHEEIRSDCPPPYANLFEAYREIIATIRKQRSDPSYFVQRPIRPQAQSAPAALHAEASAG
>CP011117.2|AKA86107.1|6234472_6234799_+|MocE
MNDQWIDVCAVGEIDPEDVLRFDHGAHTYAVFRSAEDEFFATAGLCTHEKIHLADGLVMDHVIECPKHNGRFDYRSGKALGAPVCVNLKTYPVRVEAGRVLLAVTAEI
>CP011117.2|AKA86108.1|6234795_6235995_+|Ferredoxin-reductase
MSQALIIVGAGHAGGRAALTLREEGYTGSLILIGDEAHLPYERPPLSKAVLQGSTDLAGCSLCDSTRLAALGIEHIAGNPVSRLDPQQHRLQLADGQWLTYTGLLLATGGRARRLPEAQPPVLYLRTHDEALALRDRLRPGTRVVVVGGGFIGLEVAATARGLGCEVTLLEAGPRLASRVLPAPISAALLALHREQGVDVRLNVALECIHADAVQLVDGQRLPCDLVVAGIGMQPNIELAAAAGLEVGQGIRVDAQLRTSASDIYAAGDVCEFRLAGVYQRQETWRNAEAQGRHAALNLLGGALPFETLPGFWSDQYHWGLQTVGVMTARTVSRALPGAGLLLFYLDDDARLQGACGWAPGNGAARDIKLCERLIAAGTVLNPGSLADADVSLKLLLRG
>CP011117.2|AKA86109.1|6235996_6236815_+|hypothetical-protein
MRQLLVFQSMWAMQTEPGSLDTQLDRIAAAGFDGITDHYWTPAAVPRLHAAATARGLQIEGQLFPQSVDDLAAALEVISRYGCHHLTLQADVRPRTQAEAARLIEGWQRLAEQVDFPILLETHRYRLTNDLLFTLDLLTQMPDLKLLADLSHYVVGRELPEPGALEDDEQIRTILRHSWGFHGRIASSEQVQVGLDFPQHLPWVERFTSWWRYGIDDWLTRAETPQSLAFTCELGPPPYAITDAKGRELTDRWAEALKMKALIRQVWASCHG
>CP011117.2|AKA86110.1|6236865_6237819_+|putative-dye-decolorizing-peroxidase-(DyP),-encapsulated-subgroup
MKTCPVQPPLEPQSVCHPITSSAIFMVATLASDAVENVRGWCADIAGLVRSVGKRVPSGNLTCVCGFGSDAWDRLFGAPRPASLHPFREFGVEGRRAVSTPGDILLHIRAEQMDLCFELATQLMAALGDSVKVVDEVQGFRYFDMRSIIGFVDGTENPVGRKAERFTLVGDEDPQFEGGSYVLVQKYLHNMNAWNSLTVEAQEKVIGRTKLADIELDEEAKPSNSHSALTVITDENGEEVKILRDNMPFGRPGAGEFGTYFIGYARSPKPLEQMLENMFVGRPVGNYDRLLDFSTAVTGGLFFVPSADLLEELADRQ
>CP011117.2|AKA86111.1|6237934_6238807_-|Undecaprenyl-diphosphatase
MTNVCTTGLDVGFASLDYLQIFILGVIQGITELLPVSSTAHMRVVPALLGWQDPGSAFSAAMQLAALAAVVSYFWRDVRQVTTGSISAVRRGDYNDPWFKLAVAIVLATLPIGIAGLALSSTLNTCNSPLRGLMVIGIACVVMAILLALAEVRARHTRNVSQMRLRDALIVGVAQIGALIPGVSRSGSTLTAALFLNFKREEAARFSFLLGLPAIALAGLKELWVLLHADMPAHAWPHLIFGLVVASISAFFAIWGLMKFLERFSTWPFVIYRALLGVFLIVAVSTGLLT
>CP011117.2|AKA86112.1|6238855_6239494_+|hypothetical-protein
MFQEICPGKRYLQSVQPIERIRQSIGVTGTFVNNGALRFFTESPMPETTVELIQTGPEDAELIRNLYQYYAYESSDWEQEDVEADGRFYIHDEHLARYWHDPQWSANLLLVDGYIAGFLLIEGSELPGIDALELADLFILKRYRRKGIGRAIASQVLCSAEANWLVRFYDQDEVSQAFWRTVLDNLPRPVQMIELEDEPQLVSYLITRVLLH
>CP011117.2|AKA86113.1|6239672_6240611_-|Transcriptional-regulator-containing-an-amidase-domain-and-an-AraC-type-DNA-binding-HTH-domain
MHSVALMVYPNFQSLSLSLGSVFECANLLRGEPAYEFHLVSESGGAVMTSQGFSVNTTAIRPEGYDTLIVSGYLEFRLPEANLLELVKAASAQSRRVASLCMGIFVLAEAGLLAGKRTTTHWIHAPAFRKRYPDIRLEEDKLFVVDGQVWTGAGMSAGVDLALAMVENDLGSDLARRIARKLVIAQRRGSEQSQLSALLELDPKSDRVQLALAYARENLTHDLSVEALADVARLSPRQFSRVFREETGQTPAKAIEALRVEAARAMMETSRHPVEVVARETGFGDRERMRQAFLRAFGQPPQAMQQVLFNPG
>CP011117.2|AKA86114.1|6240784_6241414_+|Transcriptional-regulator,-TetR-family
MNHPSKSARQAILERGQSIVGAKGFSAVGLNEILQAAEVPKGSFYHYFDSKDAFGVVLLDTYFDHYVQGMQALFDQPGLSHHAKLMRYWQCWIDNHTGCTDTGKCLAVKLGAEVSDLSEPMRLALLRGTARTIELLAVALQRGVEDGSLTFEQAPESLAQRLYALWLGTSVMAKITRTTAPFAEALLLTRQLLGGSENLVIHFDRGTGK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

28584 : 35536

Leptospira_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKA80571.1\|28584_29031_+	Mobile element protein	Q38213	Escherichia_phage	2.9e-34	53.4
AKA80572.1\|29118_29445_+	Mobile element protein	A0A077K814	Ralstonia_phage	8.7e-20	48.5
AKA80573.1\|29475_30987_-	Mobile element protein	S5VTD3	Leptospira_phage	2.2e-81	36.7
AKA80574.1\|31004_31364_-	Mobile element protein	S5VXZ8	Leptospira_phage	4.9e-16	41.2
AKA80575.1\|31609_32023_+	Mobile element protein	NA	NA	NA	NA
AKA80576.1\|33647_34007_+	Mobile element protein	S5VXZ8	Leptospira_phage	4.9e-16	41.2
AKA80577.1\|34024_35536_+	Mobile element protein	S5VTD3	Leptospira_phage	3.1e-80	36.0

DBSCAN-SWA_2

225657 : 291469

Acidithiobacillus_phage(28.57%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKA80733.1\|225657_226908_+\|transposase	putative transposase	A0A218MNI5	uncultured_virus	1.5e-48	47.1
AKA80734.1\|227203_227515_+	Transcriptional regulator, AraC family	NA	NA	NA	NA
AKA80735.1\|227729_228938_+	Oxidoreductase	NA	NA	NA	NA
AKA80736.1\|228984_230313_+	Permeases of the major facilitator superfamily	NA	NA	NA	NA
AKA80737.1\|230353_231256_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
AKA80738.1\|231257_232748_+	Aldehyde dehydrogenase	NA	NA	NA	NA
AKA80739.1\|232853_233006_+	hypothetical protein	NA	NA	NA	NA
AKA80740.1\|233187_233520_-	Transcriptional regulator, DeoR family	NA	NA	NA	NA
AKA80741.1\|233508_233694_+	hypothetical protein	NA	NA	NA	NA
AKA80742.1\|234338_234476_+	hypothetical protein	NA	NA	NA	NA
AKA80743.1\|235077_235245_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
AKA80744.1\|235493_236030_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
AKA80745.1\|236035_236950_-	Transcriptional regulator, LysR family	NA	NA	NA	NA
AKA80746.1\|236983_237097_-	hypothetical protein	NA	NA	NA	NA
AKA80747.1\|237327_237660_+	hypothetical protein	NA	NA	NA	NA
AKA80748.1\|237755_238670_+	Transcriptional regulator, LysR family	NA	NA	NA	NA
AKA80749.1\|238760_239006_-	putative transcriptional regulatory protein	NA	NA	NA	NA
AKA80750.1\|239523_240219_+	hypothetical protein	NA	NA	NA	NA
AKA80751.1\|240248_241142_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
AKA80752.1\|241655_243170_+	Mobile element protein	K4I413	Acidithiobacillus_phage	3.6e-145	53.5
AKA80753.1\|243190_243946_+	Mobile element protein	K4HZD4	Acidithiobacillus_phage	2.3e-71	54.4
AKA80754.1\|244487_245903_+	Threonine synthase	NA	NA	NA	NA
AKA80755.1\|246472_247522_+	Homoserine dehydrogenase	NA	NA	NA	NA
AKA80756.1\|247524_248943_+	Aldehyde dehydrogenase	NA	NA	NA	NA
AKA80757.1\|248994_250197_+	Methionine gamma-lyase	NA	NA	NA	NA
AKA80758.1\|250540_250657_+	hypothetical protein	NA	NA	NA	NA
AKA80759.1\|250885_251614_+	Lysine-arginine-ornithine-binding periplasmic	NA	NA	NA	NA
AKA80760.1\|251666_252395_+	Histidine ABC transporter, permease protein HisQ	NA	NA	NA	NA
AKA80761.1\|252391_253102_+	Histidine ABC transporter, permease protein HisM	NA	NA	NA	NA
AKA80762.1\|253154_253916_+	Histidine ABC transporter, ATP-binding protein HisP	W8CYL7	Bacillus_phage	5.5e-09	28.6
AKA80763.1\|253967_254432_+	Leucine-responsive regulatory protein	NA	NA	NA	NA
AKA80764.1\|254464_256357_+	Chemotactic transducer	A0A2H4J162	uncultured_Caudovirales_phage	4.7e-33	32.1
AKA80765.1\|256515_256998_-	putative isomerase yddE, PhzC-PhzF family	NA	NA	NA	NA
AKA80766.1\|257391_257655_-	L-lysine permease	NA	NA	NA	NA
AKA80767.1\|257830_257986_+	hypothetical protein	NA	NA	NA	NA
AKA80768.1\|258231_258765_+	Lipase	NA	NA	NA	NA
AKA80769.1\|259026_259941_-	Transcriptional regulator MexT	NA	NA	NA	NA
AKA80770.1\|260197_261220_+	Quinone oxidoreductase	NA	NA	NA	NA
AKA80771.1\|261925_263350_+	hypothetical protein	NA	NA	NA	NA
AKA80772.1\|263383_264790_+	hypothetical protein	NA	NA	NA	NA
AKA80773.1\|264893_266537_+	Phosphoglucomutase	NA	NA	NA	NA
AKA80774.1\|266605_267277_-	Pirin	NA	NA	NA	NA
AKA80775.1\|267519_269964_+	UvrD/REP helicase family protein	A0A1V0SAC2	Catovirus	1.0e-08	25.5
AKA80776.1\|270014_270287_-	hypothetical protein	NA	NA	NA	NA
AKA80777.1\|270602_271355_+	Transcriptional regulator, AraC family	NA	NA	NA	NA
AKA80778.1\|271404_272811_+	O-acetylhomoserine sulfhydrylase	NA	NA	NA	NA
AKA80779.1\|272838_273180_+	Nucleoside-diphosphate-sugar epimerase	NA	NA	NA	NA
AKA80780.1\|273240_274320_+	Putrescine ABC transporter, periplasmic putrescine-binding protein	NA	NA	NA	NA
AKA80781.1\|274598_275000_+	Secreted alkaline metalloproteinase	NA	NA	NA	NA
AKA80782.1\|275002_275788_-	Transcriptional regulator, LuxR family	NA	NA	NA	NA
AKA80783.1\|275987_277352_+	putative amino acid permease	NA	NA	NA	NA
AKA80784.1\|277361_278465_+	D-aminopeptidase	NA	NA	NA	NA
AKA80785.1\|278833_280267_+	Secreted alkaline metalloproteinase	NA	NA	NA	NA
AKA80786.1\|280314_280683_+	Alkaline proteinase inhibitor precursor	NA	NA	NA	NA
AKA80787.1\|280784_282536_+\|protease	ABC-type protease exporter, ATP-binding component PrtD/AprD	W8CYL7	Bacillus_phage	3.6e-27	30.5
AKA80788.1\|282532_283846_+\|protease	ABC-type protease exporter, membrane fusion	NA	NA	NA	NA
AKA80789.1\|283848_285183_+\|protease	ABC-type protease exporter, outer membrane component PrtF/AprF	NA	NA	NA	NA
AKA80790.1\|285214_288172_+\|protease	putative Serine protease	NA	NA	NA	NA
AKA80791.1\|288361_291469_+\|protease	putative Serine protease	NA	NA	NA	NA

DBSCAN-SWA_3

760595 : 794575

uncultured_Caudovirales_phage(71.43%)

plate,capsid,tail,terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKA81202.1\|760595_761879_-\|tail	Phage tail fiber protein	A0A219VH97	Ochrobactrum_phage	3.3e-14	31.8
AKA81203.1\|761881_762457_-\|tail	Prophage tail protein	A0A2P9JZK7	Alteromonadaceae_phage	3.0e-23	36.2
AKA81204.1\|762453_763524_-	Phage FluMu protein gp47	A0A2H4JC98	uncultured_Caudovirales_phage	1.7e-72	42.3
AKA81205.1\|763525_763756_-	Bacteriophage protein GP46	A0A2H4JDR8	uncultured_Caudovirales_phage	6.3e-17	60.0
AKA81206.1\|763956_764490_-\|plate	Prophage baseplate assembly protein V	A0A2H4JFE0	uncultured_Caudovirales_phage	1.4e-62	65.0
AKA81207.1\|764498_765632_-\|tail	Prophage tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	1.9e-162	75.1
AKA81208.1\|765615_766986_-\|tail	Phage tail/DNA circulation protein	A0A2H4JGT4	uncultured_Caudovirales_phage	2.0e-142	57.6
AKA81209.1\|766982_769346_-	hypothetical protein	A0A2H4JC53	uncultured_Caudovirales_phage	8.3e-205	51.8
AKA81210.1\|769389_769527_+	hypothetical protein	NA	NA	NA	NA
AKA81211.1\|769523_769910_-	hypothetical protein	A0A2H4JD25	uncultured_Caudovirales_phage	4.9e-38	71.1
AKA81212.1\|769914_770286_-	Transaldolase	A0A2H4J9F8	uncultured_Caudovirales_phage	5.0e-48	74.0
AKA81213.1\|770299_771400_-\|tail	Bacteriophage tail sheath protein	A0A2H4JFT7	uncultured_Caudovirales_phage	2.6e-145	75.7
AKA81214.1\|771396_771552_-	hypothetical protein	NA	NA	NA	NA
AKA81215.1\|771587_772154_-	hypothetical protein	A0A2H4JEC0	uncultured_Caudovirales_phage	5.5e-54	55.2
AKA81216.1\|772153_772645_-	hypothetical protein	A0A2H4JB66	uncultured_Caudovirales_phage	2.4e-50	61.3
AKA81217.1\|772641_773196_-	hypothetical protein	NA	NA	NA	NA
AKA81218.1\|773205_774099_-\|capsid	Phage major capsid protein	A0SMP3	Pseudomonas_virus	6.8e-91	56.8
AKA81219.1\|774127_774961_-	Mu-like prophage I protein	A0A2H4J9A2	uncultured_Caudovirales_phage	3.5e-73	54.2
AKA81220.1\|775356_775920_-	virion morphogenesis protein	A0A2H4J9E5	uncultured_Caudovirales_phage	9.6e-67	70.7
AKA81221.1\|775929_777192_-	Phage (Mu-like) virion morphogenesis protein	A0A2H4IYU7	uncultured_Caudovirales_phage	2.9e-156	63.0
AKA81222.1\|777194_778751_-	Mu-like prophage FluMu protein gp29	A0A2H4JGA9	uncultured_Caudovirales_phage	3.9e-227	76.8
AKA81223.1\|778750_780304_-\|terminase	Phage terminase, large subunit	A0A2H4JF57	uncultured_Caudovirales_phage	6.6e-251	83.1
AKA81224.1\|780300_781071_-	Integrase	A0A1J0GVP2	Pseudoalteromonas_phage	2.2e-50	41.2
AKA81225.1\|781067_781580_-\|terminase	Phage terminase, small subunit	A0A2H4JD50	uncultured_Caudovirales_phage	2.5e-58	70.3
AKA81226.1\|781584_781893_-	Phage protein	A0A2H4JGU5	uncultured_Caudovirales_phage	4.2e-40	71.6
AKA81227.1\|781892_782201_-	putative membrane protein	A0A2H4J7V5	uncultured_Caudovirales_phage	2.3e-22	53.8
AKA81228.1\|782405_783050_-	Lipoprotein, phage-associated	NA	NA	NA	NA
AKA81229.1\|783046_783643_-	Phage lytic murein transglycosylase	A0A2H4J9H7	uncultured_Caudovirales_phage	3.4e-86	75.9
AKA81230.1\|783686_783842_-	hypothetical protein	A0A2H4JBL7	uncultured_Caudovirales_phage	3.7e-13	72.5
AKA81231.1\|783976_784219_-	hypothetical protein	NA	NA	NA	NA
AKA81232.1\|785375_785792_-	E16-related protein	A0A2H4J581	uncultured_Caudovirales_phage	1.8e-38	63.7
AKA81233.1\|785788_786067_-	Phage protein	NA	NA	NA	NA
AKA81234.1\|786136_786808_-	hypothetical protein	L7P7W8	Pseudomonas_phage	7.2e-69	60.8
AKA81235.1\|786812_787229_-	hypothetical protein	A0A2I2MUJ5	uncultured_Caudovirales_phage	3.5e-50	67.4
AKA81236.1\|787303_787525_-	hypothetical protein	NA	NA	NA	NA
AKA81237.1\|787533_787950_-	Phage protein	NA	NA	NA	NA
AKA81238.1\|787951_788230_-	DNA recombination nuclease inhibitor Gamma, phage-associated	A0A1C6ZDJ8	Pseudomonas_phage	2.5e-12	48.8
AKA81239.1\|788231_788852_-	Phage protein	A0A0A1IVF8	Pseudomonas_phage	8.9e-82	74.5
AKA81240.1\|788863_789187_-	Phage protein	NA	NA	NA	NA
AKA81241.1\|789170_789551_-	Phage protein	A0A0A1IWY8	Pseudomonas_phage	3.1e-29	57.3
AKA81242.1\|789547_790159_-	hypothetical protein	L7P7I3	Pseudomonas_phage	5.8e-33	44.5
AKA81243.1\|790161_790617_-	DNA transposition protein	A0A2H4J809	uncultured_Caudovirales_phage	3.9e-58	72.2
AKA81244.1\|790905_792864_-\|transposase	Phage transposase	A0A2H4JEQ4	uncultured_Caudovirales_phage	9.9e-220	59.0
AKA81245.1\|794326_794575_+	Phage repressor	A0A0A1IWY4	Pseudomonas_phage	3.8e-28	72.0

DBSCAN-SWA_4

989052 : 999124

uncultured_Caudovirales_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKA81422.1\|989052_989877_-\|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	A0A0U2S5Z2	Escherichia_phage	6.9e-106	71.6
AKA81423.1\|990226_990829_+	putative membrane protein	NA	NA	NA	NA
AKA81424.1\|990949_991453_+	Protein sprT	NA	NA	NA	NA
AKA81425.1\|991561_992737_-	Alpha-methylacyl-CoA racemase	NA	NA	NA	NA
AKA81426.1\|992780_993287_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.6e-59	82.4
AKA81427.1\|993288_993639_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.6e-40	69.2
AKA81428.1\|993638_993917_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	A0A2H4JG28	uncultured_Caudovirales_phage	9.0e-26	60.6
AKA81429.1\|993913_994249_+\|tRNA	tRNA 2-thiouridine synthesizing protein E	A0A2H4J8B6	uncultured_Caudovirales_phage	2.3e-44	76.6
AKA81430.1\|994245_995247_+	Anthranilate phosphoribosyltransferase like	A0A2H4JBY5	uncultured_Caudovirales_phage	3.1e-169	86.3
AKA81431.1\|995335_996331_+	Glutathione S-transferase, omega	NA	NA	NA	NA
AKA81432.1\|996448_997843_-	Siroheme synthase	NA	NA	NA	NA
AKA81433.1\|997843_999124_-\|tRNA	Seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.3e-98	53.6

DBSCAN-SWA_5

1320223 : 1369061

Pseudomonas_phage(62.22%)

holin,portal,tRNA,capsid,tail,terminase,integrase

attL 1308775:1308793|attR 1356269:1356287

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1308775:1308793	attL	NA	NA	NA	NA
AKA81718.1\|1320223_1320433_+	hypothetical protein	A0A2D1GNR5	Pseudomonas_phage	4.2e-12	58.2
AKA81719.1\|1320526_1320865_+	hypothetical protein	A0A2H4IZV2	uncultured_Caudovirales_phage	5.1e-07	42.1
AKA81720.1\|1320893_1321580_+	Gifsy-2 prophage protein	A0A2H4J991	uncultured_Caudovirales_phage	1.5e-125	91.6
AKA81721.1\|1321566_1322073_-	hypothetical protein	A0A2H4IZW4	uncultured_Caudovirales_phage	1.8e-56	74.4
AKA81722.1\|1322069_1322603_-	Lytic enzyme	A0A059VA40	Pseudomonas_phage	8.2e-76	78.0
AKA81723.1\|1322661_1323180_-	hypothetical protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	1.6e-15	58.0
AKA81724.1\|1323224_1323404_-	hypothetical protein	NA	NA	NA	NA
AKA81725.1\|1324756_1328416_-\|tail	Phage tail fiber protein	A0A2D1GNE3	Pseudomonas_phage	0.0e+00	66.9
AKA81726.1\|1328997_1329585_-\|tail	Phage tail assembly protein I	A0A2D1GNM2	Pseudomonas_phage	3.8e-98	94.8
AKA81727.1\|1329581_1330364_-\|tail	Phage tail assembly protein	A0A2D1GNP8	Pseudomonas_phage	2.4e-148	90.8
AKA81728.1\|1330366_1331071_-\|tail	Phage minor tail protein	A0A2D1GNF3	Pseudomonas_phage	2.3e-134	97.0
AKA81729.1\|1331119_1331470_-\|tail	Phage minor tail protein	A0A2D1GNJ1	Pseudomonas_phage	4.1e-60	93.0
AKA81730.1\|1331469_1334904_-\|tail	Phage tail length tape-measure protein 1	A0A2D1GNQ1	Pseudomonas_phage	8.2e-294	63.7
AKA81731.1\|1335435_1335645_-	hypothetical protein	A0A2D1GNK2	Pseudomonas_phage	2.1e-19	94.0
AKA81732.1\|1335686_1336016_-	hypothetical protein	A0A2D1GNT5	Pseudomonas_phage	1.4e-46	89.0
AKA81733.1\|1336055_1336553_-	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	4.0e-85	97.0
AKA81734.1\|1336608_1336908_-	hypothetical protein	A0A2D1GNT4	Pseudomonas_phage	3.3e-42	86.9
AKA81735.1\|1336987_1337491_-	Phage protein, HK97, gp10	A0A2D1GNN2	Pseudomonas_phage	4.4e-63	71.3
AKA81736.1\|1337494_1337665_-	hypothetical protein	A0A2D1GNQ5	Pseudomonas_phage	7.9e-17	82.1
AKA81737.1\|1337674_1337851_-	hypothetical protein	A0A2D1GNG1	Pseudomonas_phage	2.7e-20	84.5
AKA81738.1\|1338003_1338342_-	Phage protein	K7P6N0	Enterobacteria_phage	2.1e-13	35.8
AKA81739.1\|1338338_1338614_-	hypothetical protein	NA	NA	NA	NA
AKA81740.1\|1338649_1339813_-\|capsid	Phage major capsid protein	F1C582	Cronobacter_phage	4.3e-162	76.5
AKA81741.1\|1339816_1340479_-\|capsid	Phage capsid and scaffold	F1C583	Cronobacter_phage	2.2e-78	67.0
AKA81742.1\|1340497_1341769_-\|portal	Phage portal protein	A0A286S1N5	Klebsiella_phage	1.7e-183	74.4
AKA81743.1\|1341768_1343490_-\|terminase	Phage terminase, large subunit	A0A2D1GNU5	Pseudomonas_phage	0.0e+00	95.1
AKA81744.1\|1343489_1343975_-\|terminase	Phage terminase small subunit	A0A2D1GNP3	Pseudomonas_phage	2.1e-86	98.8
AKA81745.1\|1344507_1344837_-\|holin	phage holin, lambda family	A0A2D1GNJ3	Pseudomonas_phage	1.4e-57	100.0
AKA81746.1\|1345705_1346059_-	antitermination protein Q, putative	A0A2D1GNB4	Pseudomonas_phage	1.1e-57	89.7
AKA81747.1\|1346397_1347693_-\|integrase	phage integrase, putative	A0A2D1GND4	Pseudomonas_phage	6.5e-127	55.6
AKA81748.1\|1347898_1349269_-	Replicative DNA helicase	A0A127KNK8	Pseudomonas_phage	1.8e-138	56.2
AKA81749.1\|1351217_1351334_+	Transcriptional regulator, Cro/CI family	A0A1B0VRI7	Pseudomonas_phage	1.6e-13	81.6
AKA81750.1\|1351994_1352375_+	Phage protein	A0A2H4JA92	uncultured_Caudovirales_phage	3.6e-25	64.3
AKA81751.1\|1352634_1352997_+	hypothetical protein	NA	NA	NA	NA
AKA81752.1\|1352993_1353308_+	hypothetical protein	NA	NA	NA	NA
AKA81753.1\|1353399_1353747_+	Translation elongation factors (GTPases)	NA	NA	NA	NA
AKA81754.1\|1353792_1354608_+	hypothetical protein	I3PUY7	Vibrio_phage	4.8e-43	38.3
AKA81755.1\|1355614_1356394_+	hypothetical protein	A0A2H4JCP9	uncultured_Caudovirales_phage	5.5e-12	30.5
1356269:1356287	attR	NA	NA	NA	NA
AKA81756.1\|1356457_1356706_-	hypothetical protein	A0A1B0VP27	Pseudomonas_phage	2.2e-31	90.7
AKA81757.1\|1356947_1357589_+	hypothetical protein	A0A2I7R6M5	Vibrio_phage	8.2e-14	27.5
AKA81758.1\|1357585_1357897_+	Phage protein	A0A2K8I958	Pseudomonas_phage	1.4e-19	50.0
AKA81759.1\|1357893_1358340_+	hypothetical protein	A0A2H4J7W7	uncultured_Caudovirales_phage	2.3e-07	44.1
AKA81760.1\|1358668_1358998_+	Phage protein	A0A1B0VM42	Pseudomonas_phage	9.3e-46	72.5
AKA81761.1\|1359047_1359383_+	hypothetical protein	W6MWX0	Pseudomonas_phage	2.9e-10	41.1
AKA81762.1\|1359432_1359930_+	hypothetical protein	A0A1B0VM52	Pseudomonas_phage	6.6e-27	48.8
AKA81763.1\|1359966_1360188_+	hypothetical protein	A0A2H4J1L2	uncultured_Caudovirales_phage	1.1e-15	65.8
AKA81764.1\|1360190_1360403_+	hypothetical protein	NA	NA	NA	NA
AKA81765.1\|1360402_1361515_+	Integrase	A0A0U4JIT5	Pseudomonas_phage	6.2e-33	32.4
AKA81766.1\|1361771_1362128_-	Transcriptional regulator, MerR family	NA	NA	NA	NA
AKA81767.1\|1362108_1362411_-	Integration host factor alpha subunit	A0A0H3UZA0	Geobacillus_virus	1.8e-11	38.9
AKA81768.1\|1362414_1364793_-\|tRNA	Phenylalanyl-tRNA synthetase beta chain	NA	NA	NA	NA
AKA81769.1\|1364819_1365836_-\|tRNA	Phenylalanyl-tRNA synthetase alpha chain	A0A2K9L3A8	Tupanvirus	1.1e-28	39.3
AKA81770.1\|1365945_1366302_-	LSU ribosomal protein L20p	NA	NA	NA	NA
AKA81771.1\|1366332_1366527_-	LSU ribosomal protein L35p	NA	NA	NA	NA
AKA81772.1\|1366587_1367019_-	Translation initiation factor 3	NA	NA	NA	NA
AKA81773.1\|1367138_1369061_-\|tRNA	Threonyl-tRNA synthetase	A0A2K9L297	Tupanvirus	1.8e-125	37.7

DBSCAN-SWA_6

2202262 : 2209275

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKA82515.1\|2202262_2203276_+	diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)	A0A127AWB9	Bacillus_phage	8.4e-13	32.1
AKA82516.1\|2203389_2204643_+	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase	A0A1V0SKB7	Klosneuvirus	8.5e-23	27.0
AKA82517.1\|2204806_2205523_+	hypothetical protein	NA	NA	NA	NA
AKA82518.1\|2205694_2206786_-	Periplasmic aromatic amino acid aminotransferase beta precursor	A0A1X6WGT4	Pacmanvirus	4.5e-12	24.1
AKA82519.1\|2207029_2207605_+	Helix-turn-helix domain protein	A0A2H4J122	uncultured_Caudovirales_phage	1.4e-52	59.8
AKA82520.1\|2207591_2208461_+	Putative preQ0 transporter	A0A2H4J2N7	uncultured_Caudovirales_phage	9.5e-106	69.2
AKA82521.1\|2208576_2209275_-	Queuosine Biosynthesis QueC ATPase	A0A2H4J8Q7	uncultured_Caudovirales_phage	3.3e-93	71.3

DBSCAN-SWA_7

2383005 : 2391937

uncultured_virus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKA82675.1\|2383005_2384571_+	Mobile element protein	A0A218MNE7	uncultured_virus	2.1e-124	48.3
AKA82676.1\|2384678_2384816_-	hypothetical protein	NA	NA	NA	NA
AKA82677.1\|2385134_2385884_+	Mobile element protein	A0A0N9SJT9	Paenibacillus_phage	5.4e-17	39.3
AKA82678.1\|2385977_2386115_-	hypothetical protein	NA	NA	NA	NA
AKA82679.1\|2386258_2387194_+	Mycobacteriophage Barnyard protein gp56	A0A0H4INH5	Stenotrophomonas_phage	3.2e-59	41.1
AKA82680.1\|2387235_2388486_+\|transposase	putative transposase	A0A218MNI5	uncultured_virus	1.5e-48	47.1
AKA82681.1\|2388740_2388908_-	hypothetical protein	NA	NA	NA	NA
AKA82682.1\|2389133_2389295_+	hypothetical protein	NA	NA	NA	NA
AKA82683.1\|2389295_2389490_-	hypothetical protein	NA	NA	NA	NA
AKA82684.1\|2390019_2390229_+	hypothetical protein	NA	NA	NA	NA
AKA82685.1\|2390262_2390640_+	hypothetical protein	NA	NA	NA	NA
AKA82686.1\|2390774_2391083_+	Mobile element protein	A9YX41	Burkholderia_phage	8.8e-06	52.1
AKA82687.1\|2391127_2391937_+	Mobile element protein	Q716C2	Shigella_phage	1.6e-75	53.6

DBSCAN-SWA_8

3742694 : 3803489

Pseudomonas_phage(64.52%)

capsid,tail,terminase,transposase,protease,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKA83869.1\|3742694_3743945_+\|transposase	putative transposase	A0A218MNI5	uncultured_virus	1.5e-48	47.1
AKA83870.1\|3743941_3744571_-	Cell filamentation protein fic	NA	NA	NA	NA
AKA83871.1\|3744570_3744741_-	hypothetical protein	NA	NA	NA	NA
AKA83872.1\|3745008_3746946_+	ATP-dependent DNA helicase, RecQ family	F2NZ48	Diadromus_pulchellus_ascovirus	3.7e-57	39.8
AKA83873.1\|3746958_3747390_+	putative 4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
AKA83874.1\|3747457_3747943_-	hypothetical protein	NA	NA	NA	NA
AKA83875.1\|3748262_3750611_-	Putative formate dehydrogenase oxidoreductase protein	NA	NA	NA	NA
AKA83876.1\|3750607_3751447_-	Formate dehydrogenase chain D	NA	NA	NA	NA
AKA83877.1\|3751691_3752132_+	hypothetical protein	NA	NA	NA	NA
AKA83878.1\|3752239_3752902_-	putative hydrolase	NA	NA	NA	NA
AKA83879.1\|3752989_3753556_+	ADP compounds hydrolase NudE	NA	NA	NA	NA
AKA83880.1\|3753552_3754389_+	3'(2'),5'-bisphosphate nucleotidase	NA	NA	NA	NA
AKA83881.1\|3754500_3754956_-	Histone acetyltransferase HPA2	NA	NA	NA	NA
AKA83882.1\|3754982_3756368_-	C4-dicarboxylate transport transcriptional regulatory protein	NA	NA	NA	NA
AKA83883.1\|3756364_3758173_-	Signal transduction histidine kinase regulating C4-dicarboxylate transport system	NA	NA	NA	NA
AKA83884.1\|3758207_3759089_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
AKA83885.1\|3759085_3759631_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.5e-53	57.5
AKA83886.1\|3759627_3760503_-	Glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	7.6e-103	62.8
AKA83887.1\|3760499_3761582_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.9e-98	53.6
AKA83888.1\|3761960_3763067_+	Agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	1.2e-105	51.1
AKA83889.1\|3763303_3763531_+	hypothetical protein	NA	NA	NA	NA
AKA83890.1\|3763583_3765671_-	Ferrichrome-iron receptor	NA	NA	NA	NA
AKA83891.1\|3766084_3767401_+	Outer membrane porin, OprD family	NA	NA	NA	NA
AKA83892.1\|3767507_3769085_-\|protease	Zn-dependent protease	NA	NA	NA	NA
AKA83893.1\|3769098_3769464_-	hypothetical protein	NA	NA	NA	NA
AKA83894.1\|3769501_3770845_-	hypothetical protein	NA	NA	NA	NA
AKA83895.1\|3771039_3771324_-	hypothetical protein	NA	NA	NA	NA
AKA83896.1\|3772580_3772703_-	hypothetical protein	NA	NA	NA	NA
AKA83897.1\|3774246_3775404_-	hypothetical protein	NA	NA	NA	NA
AKA83898.1\|3775755_3776709_-	Mobile element protein	V9IQN0	Stenotrophomonas_phage	1.5e-56	40.3
AKA83899.1\|3777233_3779945_-	Phage-related protein	A0A2H4J936	uncultured_Caudovirales_phage	2.7e-284	53.7
AKA83900.1\|3779944_3780178_-	Adenylate kinase	NA	NA	NA	NA
AKA83901.1\|3780252_3780489_-	hypothetical protein	NA	NA	NA	NA
AKA83902.1\|3780485_3780965_-	Orf33	A0A2H4JG61	uncultured_Caudovirales_phage	9.1e-42	56.3
AKA83903.1\|3780994_3781660_-	hypothetical protein	A0A2H4JE67	uncultured_Caudovirales_phage	2.2e-09	53.7
AKA83904.1\|3781717_3781903_+	hypothetical protein	NA	NA	NA	NA
AKA83905.1\|3781941_3782082_-	hypothetical protein	NA	NA	NA	NA
AKA83906.1\|3782273_3782882_-\|capsid	Phage-related capsid packaging protein	A0A0U4B0L9	Pseudomonas_phage	3.1e-87	80.8
AKA83907.1\|3782868_3785106_-\|terminase	Phage terminase, ATPase subunit	A0A0U4JIZ9	Pseudomonas_phage	7.3e-267	70.2
AKA83908.1\|3785333_3786191_+\|capsid	Phage capsid scaffolding protein	A0A0U4JVV6	Pseudomonas_phage	4.9e-54	56.8
AKA83909.1\|3786192_3787215_+\|capsid	Phage capsid protein	A0A0U4K5I9	Pseudomonas_phage	4.4e-126	68.2
AKA83910.1\|3787211_3787937_+\|terminase	putative terminase, endonuclease subunit	A0A0U4JEJ1	Pseudomonas_phage	1.5e-72	62.9
AKA83911.1\|3788034_3788496_+\|head	putative head completion/stabilization protein	A0A0U4J933	Pseudomonas_phage	6.0e-43	60.1
AKA83912.1\|3788492_3788942_+	hypothetical protein	A0A0U4IBS7	Pseudomonas_phage	6.1e-48	65.5
AKA83913.1\|3788931_3789612_+	hypothetical protein	A0A0U4ISN1	Pseudomonas_phage	4.6e-63	61.1
AKA83914.1\|3789623_3790739_+	Conserved hypothetical phage protein	A0A0U4KLE6	Pseudomonas_phage	8.6e-144	69.3
AKA83915.1\|3790745_3791195_+	hypothetical protein	A0A0U3TH58	Pseudomonas_phage	2.0e-59	75.0
AKA83916.1\|3791403_3791610_+	hypothetical protein	NA	NA	NA	NA
AKA83917.1\|3791606_3792140_+	putative phage lysozyme	NA	NA	NA	NA
AKA83918.1\|3792139_3792592_+	Phage outer membrane lytic protein Rz	A0A0U4JXC2	Pseudomonas_phage	1.1e-23	50.3
AKA83919.1\|3792629_3792917_+	hypothetical protein	A0A0U4B0P2	Pseudomonas_phage	1.1e-29	69.5
AKA83920.1\|3792940_3793081_+	hypothetical protein	A0A0U4B0S4	Pseudomonas_phage	6.1e-15	80.4
AKA83921.1\|3793087_3795400_+	Phage tape measure	A0A0U4IJ81	Pseudomonas_phage	5.2e-143	40.2
AKA83922.1\|3795396_3795714_+	hypothetical protein	A0A0U4B0N5	Pseudomonas_phage	1.1e-35	79.4
AKA83923.1\|3795710_3796883_+	Putative bacteriophage protein	A0A0U4JJ14	Pseudomonas_phage	9.3e-165	74.0
AKA83924.1\|3796879_3797404_+	hypothetical protein	A0A0U4JVX3	Pseudomonas_phage	1.2e-82	82.2
AKA83925.1\|3797412_3799935_+\|tail	Phage tail fiber protein	A0A0U4K5K2	Pseudomonas_phage	3.6e-121	58.4
AKA83926.1\|3799944_3800379_+	hypothetical protein	NA	NA	NA	NA
AKA83927.1\|3800375_3801299_+	hypothetical protein	NA	NA	NA	NA
AKA83928.1\|3801295_3801841_+	hypothetical protein	A0A0U4J942	Pseudomonas_phage	5.1e-57	66.7
AKA83929.1\|3801837_3802542_+	hypothetical protein	A0A2I7RNK1	Vibrio_phage	1.4e-38	40.3
AKA83930.1\|3802514_3803489_+	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	6.4e-127	69.3

DBSCAN-SWA_9

4797350 : 4887751

uncultured_Caudovirales_phage(49.12%)

plate,tRNA,tail,terminase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKA84808.1\|4797350_4797821_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
AKA84809.1\|4797902_4798946_-	Ferric iron ABC transporter, ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-22	30.4
AKA84810.1\|4798942_4799866_-	Ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	4.2e-19	27.4
AKA84811.1\|4800298_4802407_+	Formate dehydrogenase-O, major subunit	NA	NA	NA	NA
AKA84812.1\|4802493_4802832_+	Glutaredoxin-related protein	NA	NA	NA	NA
AKA84813.1\|4802895_4803366_-	Bacterioferritin	NA	NA	NA	NA
AKA84814.1\|4803566_4803785_-	Bacterioferritin-associated ferredoxin	NA	NA	NA	NA
AKA84815.1\|4804027_4804630_+	Alkyl hydroperoxide reductase subunit C-like protein	NA	NA	NA	NA
AKA84816.1\|4804695_4805367_-	Ribonuclease T	NA	NA	NA	NA
AKA84817.1\|4805363_4806410_-	Dihydroorotase	NA	NA	NA	NA
AKA84818.1\|4806567_4807476_+	Sodium-type flagellar protein motY precursor	NA	NA	NA	NA
AKA84819.1\|4807605_4808823_+	Argininosuccinate synthase	NA	NA	NA	NA
AKA84820.1\|4809447_4810080_+	DNA-binding response regulator, LuxR family	NA	NA	NA	NA
AKA84821.1\|4810163_4810346_-\|tRNA	Leucyl-tRNA synthetase	NA	NA	NA	NA
AKA84822.1\|4810453_4811092_-	Endonuclease III	NA	NA	NA	NA
AKA84823.1\|4811203_4812373_-	Electron transport complex protein RnfB	NA	NA	NA	NA
AKA84824.1\|4812457_4814509_-\|tRNA	Methionyl-tRNA synthetase	NA	NA	NA	NA
AKA84825.1\|4814682_4815777_+	Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like	NA	NA	NA	NA
AKA84826.1\|4816271_4816595_-	4Fe-4S ferredoxin, iron-sulfur binding	NA	NA	NA	NA
AKA84827.1\|4816737_4819290_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.1e-29	21.9
AKA84828.1\|4819375_4820620_-	Integrase	A0A1I9KF78	Aeromonas_phage	2.2e-71	41.0
AKA84829.1\|4821806_4823798_-	C-5 cytosine-specific DNA methylase	A0A0U1T6D1	Pseudomonas_phage	1.5e-202	72.9
AKA84830.1\|4824123_4824666_-	putative hydrolases of HD superfamily	A0A2D1GNL9	Pseudomonas_phage	1.5e-29	43.0
AKA84831.1\|4824662_4824884_-	hypothetical protein	NA	NA	NA	NA
AKA84832.1\|4825164_4825914_+	Mobile element protein	A0A0N9SJT9	Paenibacillus_phage	5.4e-17	39.3
AKA84833.1\|4825902_4826319_-	hypothetical protein	NA	NA	NA	NA
AKA84834.1\|4826372_4826570_-	hypothetical protein	NA	NA	NA	NA
AKA84835.1\|4826571_4826895_-	transcriptional regulator, putative	NA	NA	NA	NA
AKA84836.1\|4827124_4827409_-	DNA-binding protein Roi-related protein	NA	NA	NA	NA
AKA84837.1\|4827418_4827997_-	hypothetical protein	NA	NA	NA	NA
AKA84838.1\|4829712_4830231_+	hypothetical protein	NA	NA	NA	NA
AKA84839.1\|4830223_4830451_+	hypothetical protein	A2I309	Vibrio_virus	3.2e-05	40.8
AKA84840.1\|4830440_4832663_+	DNA primase, phage associated	A0A2D1GN57	Marinobacter_phage	4.8e-194	47.7
AKA84841.1\|4832808_4833021_+	hypothetical protein	NA	NA	NA	NA
AKA84842.1\|4833718_4833883_+	Holin	A0A2H4J893	uncultured_Caudovirales_phage	9.3e-15	79.2
AKA84843.1\|4834647_4836648_+\|terminase	Phage terminase, large subunit	A0A2H4J898	uncultured_Caudovirales_phage	0.0e+00	83.5
AKA84844.1\|4837377_4837584_+	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	5.3e-23	77.9
AKA84845.1\|4837583_4839065_+	hypothetical protein	A0A2H4JFL5	uncultured_Caudovirales_phage	7.5e-244	84.8
AKA84846.1\|4839061_4840204_+\|protease	Prophage Clp protease-like protein	A0A2H4JDI2	uncultured_Caudovirales_phage	1.5e-138	69.5
AKA84847.1\|4840200_4840539_+	hypothetical protein	A0A2H4JF15	uncultured_Caudovirales_phage	6.8e-44	84.4
AKA84848.1\|4840600_4841596_+	elements of external origin	A0A2H4J890	uncultured_Caudovirales_phage	9.7e-171	88.5
AKA84849.1\|4841598_4841919_+	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	2.2e-39	71.4
AKA84850.1\|4841915_4842575_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	2.3e-80	69.9
AKA84851.1\|4842574_4843090_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	5.9e-63	67.3
AKA84852.1\|4843086_4843653_+\|plate	Baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	2.9e-55	73.2
AKA84853.1\|4843985_4844312_+\|plate	Baseplate assembly protein W	A0A2H4JA09	uncultured_Caudovirales_phage	6.2e-34	66.0
AKA84854.1\|4844308_4845190_+\|plate	Baseplate assembly protein J	A0A2H4JFK9	uncultured_Caudovirales_phage	4.0e-104	67.5
AKA84855.1\|4845191_4845881_+\|tail	Phage tail fiber	A0A2H4JDH5	uncultured_Caudovirales_phage	6.0e-71	69.0
AKA84856.1\|4845877_4847761_+\|tail	Phage tail fiber protein	A4PE45	Ralstonia_virus	2.6e-68	49.1
AKA84857.1\|4848249_4849416_+\|tail	Phage tail sheath monomer	A0A2H4J869	uncultured_Caudovirales_phage	6.2e-169	77.4
AKA84858.1\|4849443_4849932_+\|tail	Phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.2e-60	71.9
AKA84859.1\|4850138_4850546_+	hypothetical protein	A0A2H4J873	uncultured_Caudovirales_phage	2.3e-17	50.0
AKA84860.1\|4850696_4853852_+\|tail	Phage tail length tape-measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	3.1e-90	36.9
AKA84861.1\|4853870_4854707_+	Phage protein U	A0A2H4J875	uncultured_Caudovirales_phage	6.1e-110	69.7
AKA84862.1\|4854750_4854888_+\|tail	Phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	3.1e-11	72.7
AKA84863.1\|4854936_4856028_+\|tail	Phage tail protein D	A0A2H4JBF6	uncultured_Caudovirales_phage	2.5e-148	75.7
AKA84864.1\|4856076_4856640_+	Lytic enzyme	B5TK83	Pseudomonas_phage	1.3e-84	80.7
AKA84865.1\|4856597_4857164_+	hypothetical protein	B5TK84	Pseudomonas_phage	3.0e-44	57.5
AKA84866.1\|4857313_4858108_+	Methyl-directed repair DNA adenine methylase	C7BGE1	Burkholderia_phage	9.3e-100	65.8
AKA84867.1\|4858113_4858815_-	Gifsy-2 prophage protein	A0A2H4J991	uncultured_Caudovirales_phage	5.0e-57	50.4
AKA84868.1\|4859009_4859273_+	Mobile element protein	A0A077K814	Ralstonia_phage	3.4e-14	63.8
AKA84869.1\|4859455_4862176_+	hypothetical protein	NA	NA	NA	NA
AKA84870.1\|4862253_4862625_-	Retron-type RNA-directed DNA polymerase	NA	NA	NA	NA
AKA84871.1\|4862637_4862781_-	Retron-type RNA-directed DNA polymerase	NA	NA	NA	NA
AKA84872.1\|4863096_4864098_+	Error-prone, lesion bypass DNA polymerase V (UmuC)	I6RSM4	Salmonella_phage	1.8e-68	44.6
AKA84873.1\|4864446_4864629_-	hypothetical protein	NA	NA	NA	NA
AKA84874.1\|4865320_4867789_+	Phosphoenolpyruvate carboxylase	NA	NA	NA	NA
AKA84875.1\|4867853_4868909_+	D-3-phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	1.1e-20	32.5
AKA84876.1\|4868936_4869590_+	Demethylmenaquinone methyltransferase	NA	NA	NA	NA
AKA84877.1\|4869631_4869826_+	Error-prone, lesion bypass DNA polymerase V (UmuC)	NA	NA	NA	NA
AKA84878.1\|4869887_4870259_-	hypothetical protein	NA	NA	NA	NA
AKA84879.1\|4870251_4870740_-	GepA protein	D0UIM3	Aggregatibacter_phage	2.2e-27	45.3
AKA84880.1\|4870981_4871716_+	Transcriptional regulator, Cro/CI family	B5TK58	Pseudomonas_phage	1.7e-119	88.1
AKA84881.1\|4871903_4872023_+	hypothetical protein	NA	NA	NA	NA
AKA84882.1\|4872306_4872645_+	Holin	B5TK61	Pseudomonas_phage	1.1e-44	86.4
AKA84883.1\|4872668_4873184_+	Phage protein	NA	NA	NA	NA
AKA84884.1\|4873187_4873799_+\|plate	Baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	3.3e-44	55.3
AKA84885.1\|4873808_4873967_+\|plate	Baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	4.2e-12	69.4
AKA84886.1\|4874138_4875134_+\|plate	Baseplate assembly protein J	A0A2H4JC04	uncultured_Caudovirales_phage	1.7e-111	63.8
AKA84887.1\|4875130_4875769_+\|tail	Phage tail fiber	A0A2H4JDK0	uncultured_Caudovirales_phage	3.6e-38	51.9
AKA84888.1\|4875765_4876296_+\|tail	Phage tail fiber protein	B0ZSG1	Halomonas_phage	6.5e-49	56.8
AKA84889.1\|4877213_4877348_+	hypothetical protein	NA	NA	NA	NA
AKA84890.1\|4877435_4877609_+	hypothetical protein	NA	NA	NA	NA
AKA84891.1\|4877611_4878778_+\|tail	Phage tail sheath monomer	B0ZSG8	Halomonas_phage	3.2e-125	57.2
AKA84892.1\|4878777_4879284_+	hypothetical protein	Q6R4W3	Vibrio_virus	1.3e-22	34.5
AKA84893.1\|4879467_4880040_+	hypothetical protein	B0ZSH0	Halomonas_phage	3.6e-29	39.8
AKA84894.1\|4880048_4880162_+	hypothetical protein	NA	NA	NA	NA
AKA84895.1\|4880167_4882009_+\|tail	Phage tail length tape-measure protein	NA	NA	NA	NA
AKA84896.1\|4882020_4882392_+	hypothetical protein	B0ZSH2	Halomonas_phage	3.5e-33	57.7
AKA84897.1\|4882384_4882597_+\|tail	P2-like prophage tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	1.8e-18	62.9
AKA84898.1\|4882606_4883617_+\|tail	Phage tail protein D	A0A2H4JH05	uncultured_Caudovirales_phage	1.5e-99	55.1
AKA84899.1\|4883771_4884242_+	Lytic enzyme	B5TK83	Pseudomonas_phage	8.5e-69	79.9
AKA84900.1\|4884229_4884709_+	hypothetical protein	B5TK84	Pseudomonas_phage	2.0e-36	55.1
AKA84901.1\|4884791_4885292_+	C-terminal domain of CinA type S	B5TK85	Pseudomonas_phage	9.1e-69	80.7
AKA84902.1\|4885375_4886434_+	RecA protein	A0A0S2MVG1	Bacillus_phage	2.4e-111	62.4
AKA84903.1\|4886487_4886910_+	Regulatory protein RecX	NA	NA	NA	NA
AKA84904.1\|4886953_4887751_-	Mobile element protein	Q8W6R2	Burkholderia_virus	1.6e-22	41.4

DBSCAN-SWA_10

4994682 : 4999646

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKA85006.1\|4994682_4995432_+	5-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.3e-63	50.2
AKA85007.1\|4995431_4996109_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.1e-43	53.1
AKA85008.1\|4996344_4997154_+	Lipoprotein NlpD	A0A0S2SXL7	Bacillus_phage	8.0e-06	33.3
AKA85009.1\|4997259_4998270_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
AKA85010.1\|4998482_4998692_-	Cold shock protein CspA	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
AKA85011.1\|4999037_4999646_+	Deoxycytidine triphosphate deaminase	S5VM63	Pseudomonas_phage	3.9e-74	73.3

DBSCAN-SWA_11

6534163 : 6556054

Leptospira_phage(33.33%)

tail,integrase,transposase

attL 6528529:6528545|attR 6541953:6541969

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
6528529:6528545	attL	NA	NA	NA	NA
AKA86346.1\|6534163_6534895_+\|transposase	putative transposase	A0A0K2CZ57	Paenibacillus_phage	1.1e-22	29.9
AKA86347.1\|6534974_6535334_+	Mobile element protein	S5VXZ8	Leptospira_phage	4.9e-16	41.2
AKA86348.1\|6535351_6536863_+	Mobile element protein	S5VTD3	Leptospira_phage	2.2e-81	36.7
AKA86349.1\|6536923_6537439_+\|transposase	putative transposase	A0A218MNI5	uncultured_virus	3.1e-40	43.5
AKA86350.1\|6537913_6538753_-\|integrase	Phage-related integrase	NA	NA	NA	NA
AKA86351.1\|6539410_6539533_-	hypothetical protein	NA	NA	NA	NA
AKA86352.1\|6539683_6540043_+	hypothetical protein	NA	NA	NA	NA
AKA86353.1\|6540207_6541800_-	Retron-type RNA-directed DNA polymerase	A0A0U4J920	Pseudomonas_phage	7.7e-29	30.5
AKA86354.1\|6542160_6542295_-	Mobile element protein	NA	NA	NA	NA
6541953:6541969	attR	NA	NA	NA	NA
AKA86355.1\|6544277_6544775_-	Mobile element protein	A0A077K814	Ralstonia_phage	2.9e-43	59.9
AKA86356.1\|6544849_6545674_-	Mobile element protein	S5WIU1	Leptospira_phage	2.2e-43	37.8
AKA86357.1\|6545670_6545904_-	Mobile element protein	NA	NA	NA	NA
AKA86358.1\|6545970_6546462_-	Mobile element protein	Q38213	Escherichia_phage	3.8e-43	53.6
AKA86359.1\|6547705_6547873_+	hypothetical protein	NA	NA	NA	NA
AKA86360.1\|6549800_6550994_+	hypothetical protein	NA	NA	NA	NA
AKA86361.1\|6551285_6551588_+	hypothetical protein	NA	NA	NA	NA
AKA86362.1\|6551644_6552850_+\|tail	Phage tail sheath protein FI	NA	NA	NA	NA
AKA86363.1\|6552949_6554599_+\|tail	Phage tail sheath protein FI	J9PVC2	Bacillus_phage	1.1e-22	36.8
AKA86364.1\|6554719_6556054_+\|tail	Phage tail sheath protein FI	NA	NA	NA	NA

DBSCAN-SWA_12

6573272 : 6587442

Leptospira_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKA86373.1\|6573272_6576905_+	Hybrid sensory histidine kinase in two-component regulatory system with EvgA	A0A1V0SGX0	Hokovirus	2.6e-40	34.5
AKA86374.1\|6576992_6577121_-	hypothetical protein	NA	NA	NA	NA
AKA86375.1\|6577155_6577527_-	Retron-type RNA-directed DNA polymerase	NA	NA	NA	NA
AKA86376.1\|6577640_6578891_+\|transposase	putative transposase	A0A218MNI5	uncultured_virus	1.5e-48	47.1
AKA86377.1\|6578887_6580108_-	Retron-type RNA-directed DNA polymerase	A0A0U4J920	Pseudomonas_phage	1.2e-26	34.7
AKA86378.1\|6580415_6580685_-	Mobile element protein	S5VTD3	Leptospira_phage	7.9e-11	50.8
AKA86379.1\|6580725_6581085_+	Mobile element protein	S5VXZ8	Leptospira_phage	1.8e-18	39.8
AKA86380.1\|6581102_6582656_+	Mobile element protein	S5VTD3	Leptospira_phage	2.0e-82	35.5
AKA86381.1\|6582963_6584556_+	Retron-type RNA-directed DNA polymerase	A0A0U4J920	Pseudomonas_phage	7.7e-29	30.5
AKA86382.1\|6584524_6585328_-	Mobile element protein	S5VLC8	Leptospira_phage	3.9e-37	37.1
AKA86383.1\|6585310_6585436_+	Mobile element protein	NA	NA	NA	NA
AKA86384.1\|6585480_6585747_+	Mobile element protein	NA	NA	NA	NA
AKA86385.1\|6585845_6586079_+	Mobile element protein	NA	NA	NA	NA
AKA86386.1\|6586075_6586900_+	Mobile element protein	S5WIU1	Leptospira_phage	2.2e-43	37.8
AKA86387.1\|6587037_6587442_+	Mobile element protein	Q716C2	Shigella_phage	2.5e-40	57.9

DBSCAN-SWA_13

6646107 : 6655534

Pseudomonas_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKA86434.1\|6646107_6647619_+	Mobile element protein	S5VTD3	Leptospira_phage	3.4e-82	36.4
AKA86435.1\|6647926_6649519_+	Retron-type RNA-directed DNA polymerase	A0A0U4J920	Pseudomonas_phage	7.7e-29	30.5
AKA86436.1\|6649839_6651432_+	Retron-type RNA-directed DNA polymerase	A0A0U4J920	Pseudomonas_phage	7.7e-29	30.5
AKA86437.1\|6651612_6652593_+	Mobile element protein	Q38213	Escherichia_phage	9.7e-99	57.6
AKA86438.1\|6652920_6653163_-	Mobile element protein	Q716C2	Shigella_phage	1.6e-18	55.6
AKA86439.1\|6653215_6654565_-	Mobile element protein	W5R8L2	Staphylococcus_phage	2.2e-40	32.6
AKA86440.1\|6654533_6655181_-	Mobile element protein	Q716C2	Shigella_phage	3.2e-42	51.7
AKA86441.1\|6655225_6655534_-	Mobile element protein	A9YX41	Burkholderia_phage	8.8e-06	52.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP011117

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection