CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026286	Microcystis aeruginosa NIES-2549 plasmid p1, complete sequence	0 crisprs	NA	0	0	0	0
CP011304	Microcystis aeruginosa NIES-2549, complete genome	21 crisprs	cas14j,Cas14c_CAS-V-F,RT,c2c9_V-U4,csa3,cas14k,2OG_CAS,DinG,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas2,cas1,cas4,cas6,cas3,cas5,cas7,cas8b5,WYL	4	33	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: CP011304_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_1

142678-142818

TypeV

Consensus_repeat	Method
TTATTTATTCTCCCCTCTCCCTTC	CRISPRCasFinder

2 spacers

cas14j

The CRISPR arrays of CP011304_1

>merge|CP011304|1|142678-142818|CRISPRCasFinder
TTATTTATTCTCCCCTCTCCCTTCCCCCTAATTCATAATTCATAATTCATACTAAATTCGGTTATTAAAAACTGATTATTTATTCTCCCCTCTCCCCTCTCCCCACTTCCCACTCCCTTCTCCCTTCTCCCTTCTCCCCTT

>CP011304|1|1|142678-142818|CRISPRCasFinder
TTATTTATTCTCCCCTCTCCCTTC	CCCCTAATTCATAATTCATAATTCATACTAAATTCGGTTATTAAAAACTGA
TTATTTATTCTCCCCTCTCCCCTC	TCCCCACTTCCCACTCCC
TTCTCCCTTCTCCCTTCTCCCCTT

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE62491.1\|140152_140542_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE62496.1\|142853_143780_+\|Ribosomal-large-subunit-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|161659
CP011304.1\|AKE62505.1\|149910_150045_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE62487.1\|137549_137708_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE62492.1\|140753_141095_+\|Membrane-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|377198
CP011304.1\|AKE62485.1\|132873_133215_-\|HicB-protein	unknown	unknown	gnl\|CDD\|226679
CP011304.1\|AKE62486.1\|133468_137461_-\|putative-restriction	unknown	unknown	gnl\|CDD\|378996
CP011304.1\|AKE62502.1\|146560_146950_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE62488.1\|137679_137946_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE62497.1\|143776_144778_-\|putative-BioA-alternative-protein	unknown	unknown	gnl\|CDD\|235763
CP011304.1\|AKE62493.1\|141156_141270_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE62494.1\|141545_142628_+\|WD-repeat-protein	unknown	unknown	gnl\|CDD\|214939
CP011304.1\|AKE62498.1\|145094_145304_+\|Cellulase-M	unknown	unknown	gnl\|CDD\|314207
CP011304.1\|AKE62504.1\|147890_149519_-\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|223104
CP011304.1\|AKE62489.1\|138146_138503_-\|putative-iron-binding-protein-from-the-HesB_IscA_SufA-family	unknown	unknown	gnl\|CDD\|272875
CP011304.1\|AKE62490.1\|138827_140042_+\|Mobile-element-protein	cas14j	-	gnl\|CDD\|223747
CP011304.1\|AKE62503.1\|147217_147934_+\|Trk-system-potassium-uptake-protein-TrkA	unknown	unknown	gnl\|CDD\|223643
CP011304.1\|AKE62501.1\|146257_146560_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE62499.1\|145348_145735_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|177092
CP011304.1\|AKE62500.1\|145734_146142_+\|Ferredoxin	unknown	unknown	gnl\|CDD\|379145

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE62497.1\|143776_144778_-\|putative-BioA-alternative-protein	gnl\|CDD\|235763	PRK06270, PRK06270, homoserine dehydrogenase; Provisional.	4.22584e-08
CP011304.1\|AKE62496.1\|142853_143780_+\|Ribosomal-large-subunit-pseudouridine-synthase-D	gnl\|CDD\|161659	TIGR00005, Ribosomal_large_subunit_pseudouridine_synthase_D, pseudouridine synthase, RluA family. In E. coli, RluD (SfhB) modifies uridine to pseudouridine at 23S RNA U1911, 1915, and 1917, RluC modifies 955, 2504 and 2580, and RluA modifies U746 and tRNA U32. An additional homolog from E. coli outside this family, TruC (SP\|Q46918), modifies uracil-65 in transfer RNAs to pseudouridine. [Protein synthesis, tRNA and rRNA base modification].	1.00953e-117
CP011304.1\|AKE62492.1\|140753_141095_+\|Membrane-protein-of-unknown-function	gnl\|CDD\|377198	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV. These proteins are predicted transmembrane proteins with probably four transmembrane spans. The 1.E.40 is represented by the mycobacterial 4 phage holin, but it also contains many cyanobacterial. proteobacterial and firmicute proteins. Holins are encoded within the genomes of Gram-positive and Gram-negative bacteria as well as in those of the bacteriophage of these organisms. The primary function of holins appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis. When chromosomally encoded the enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some may catalyze export of nucleases.	8.9278e-21
CP011304.1\|AKE62485.1\|132873_133215_-\|HicB-protein	gnl\|CDD\|226679	COG4226, HicB, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	4.89313e-34
CP011304.1\|AKE62486.1\|133468_137461_-\|putative-restriction	gnl\|CDD\|378996	pfam12950, TaqI_C, TaqI-like C-terminal specificity domain. This domain is found at the C-terminus of the TaqI protein and is involved in DNA-binding and substrate recognition.	5.59464e-14
CP011304.1\|AKE62494.1\|141545_142628_+\|WD-repeat-protein	gnl\|CDD\|214939	smart00960, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	2.88039e-06
CP011304.1\|AKE62498.1\|145094_145304_+\|Cellulase-M	gnl\|CDD\|314207	pfam11211, DUF2997, Protein of unknown function (DUF2997). This family of proteins has no known function.	1.45899e-19
CP011304.1\|AKE62504.1\|147890_149519_-\|Na+/H+-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	5.56979e-76
CP011304.1\|AKE62489.1\|138146_138503_-\|putative-iron-binding-protein-from-the-HesB_IscA_SufA-family	gnl\|CDD\|272875	TIGR00049, Uncharacterized_protein_in_nifU_5'region, Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	7.35402e-50
CP011304.1\|AKE62490.1\|138827_140042_+\|Mobile-element-protein	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.71719e-67
CP011304.1\|AKE62503.1\|147217_147934_+\|Trk-system-potassium-uptake-protein-TrkA	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	1.80166e-49
CP011304.1\|AKE62499.1\|145348_145735_+\|hypothetical-protein	gnl\|CDD\|177092	CHL00193, ycf35, Ycf35; Provisional.	3.28467e-63
CP011304.1\|AKE62500.1\|145734_146142_+\|Ferredoxin	gnl\|CDD\|379145	pfam13370, Fer4_13, 4Fe-4S single cluster domain of Ferredoxin I. Fer4_13 is a ferredoxin I from sulfate-reducing bacteria. Chemical sequence analysis suggests that this characteristic [4Fe-4S] cluster sulfur environment is widely distributed among ferredoxins.	2.95685e-20

>CP011304.1|AKE62494.1|141545_142628_+|WD-repeat-protein
MSWIVEQLIYRSFSQLGFKYIASANVPPGIQQVFYQHIVSQLWDTYNPPHRNFKGVYIYQIDSHNTLFGWLINDGKDEFGPGDIPYFHCYYLRELLDSKKLVKILACLEAGPLKRLGRDEAKISLDPVILADNYQANAFELGIKLSKDIRLFSHRQLREEKPLQWFISLEETKERPHPTDNNYDNSKDTFLREPNYQAEIAKIMEELAEKPIAIEGIMLVSPQGQPLTDSIGMPHNSALILAGTMIYLANNTKEELSWSDVEQIAIRSPQGHLILTPCSDQAFLLVKTGKTITGLLEGEIQKTRSKLAKILAISNPTPHPPLLNPTVNPFLDSVVEEFEIVLETEDDNSTDIRYPGRTLQ
>CP011304.1|AKE62493.1|141156_141270_-|hypothetical-protein
MPLGKLFSFSSLTDTENCIKTITITQKLGRRCYNQRL
>CP011304.1|AKE62492.1|140753_141095_+|Membrane-protein-of-unknown-function
MLSFFLRWLITAVSLLITAQIVPGIEIKNFTVALIAAVVLGLINAIVRPLLILFTLPLTILTLGLFIFVVNAISFSLASYFISGFEVKSFFAALFGSIVVSIISGVLNGIFVD
>CP011304.1|AKE62491.1|140152_140542_-|hypothetical-protein
MISRKNFSQSQQVEIGKTRIIQGATGTLMLMSLLSLLLAPPSLASPEPPNSVIAATRQDLSRKTKISVNRLQIQAAQPQTWPDGCLGLAKPGEFCTQALVQGWRIILTDNQKTWVYRTDSSGTNLRLEK
>CP011304.1|AKE62490.1|138827_140042_+|Mobile-element-protein
MEKAYSYRFYPTPEQESLLRRTLGCVRLVYNKALHERTQAWYERQERVGYAQTSSMLTDWKKQEELDFLNEVSCVPLQQGLRHLQTAFNNFFSGRTKYPNFKKKHQGGSAEFTKSAFKFKDRQIYLAKCTEPLPIRWSRQIPDGCEPSTVTVRLHPSGRWHISIRFDDPTIKPLPVTDKAIGIDLGISSIVITSDGDKVSNSKHFKKHYQRLRRASKNLSRKQKGSKNREKARIKVAKIHAQITDSRKDHLHKLTTQLVRENQTIVVENLAIKNMVKNPKLSQAISDVSWGEITRQLAYKCRWYGRNYIEIDRWFPSSKRCSNCGYIAEKMPLNVREWDCPICGTHHDRDINASKNILAAGLAVSVCRATIRPEQSKSVKAGAEPRKASAVSVSRTGKKQKPKS
>CP011304.1|AKE62489.1|138146_138503_-|putative-iron-binding-protein-from-the-HesB_IscA_SufA-family
MTQATQIQGKGILLSEAALKHLTMLKEQQGKDLCLRVGVRQGGCSGMSYMMDFEHPSNIGPQDEVFDYDGFKIVSDKKSLLYLYGLMLDYSNAMIGGGFQFTNPNASQTCGCGKSFGV
>CP011304.1|AKE62488.1|137679_137946_+|hypothetical-protein
MTPQAIPKLNHLPSALAREGAVCLELEDGVAIFRASTAVQTRIEELLQLEKESAITPAQKQELDAYEEIDDYLSFVNRTLRNLSQNPS
>CP011304.1|AKE62487.1|137549_137708_-|hypothetical-protein
MSLGIAWGVISVTSYQSSVTTKDFNFYPHYYTYGCGKSWRFFWPKPLTKSET
>CP011304.1|AKE62486.1|133468_137461_-|putative-restriction
MSGQASNKPLFSQHYLEHRLPDSGEWQEDVSVAFSRLESLYQQKKAILPTLNEAQTEAELIQPILEILGFSYIPQVSSRGKGRSERPDYALFATENDRYQAYALQNNERAFYSQVLAIAEAKYWQRSLSDVSKNDQRDIWKNSNPSFQITNYLTGTGVDWGILTNGREWRLYYRQASSTATEFYLVDLMELLEGGDRQKFPYFWLFFRQEAFIKDIHGQNFLERVREGSTTYATRVGNELKELVFDRIFPDISQGFVSLNTDIQPDLLYEASLSLLYKLLFLLYAEARDLLPVRGDYRDYSLLQKTREIAVKIDRQQVFSGTSTGIYDALLSLFRIVDRGDANLAVPRYNGGLFDMEEGRVNCFLGQYKLSDAVLAPILDKLARFEGQPIDYSFLGVRQLGSIYEGLLEYRIVIEGESVHLENDRGERKATGSYYTPDYIVKYIVSHTLKPILEQRARQFGDVMTEIATRRQESSDRRLGNLSQQGLEKELQRLEKKAITTLLDLKLCDPAMGSGHFLVEAVDYLTDELIQILNLYPEDNPVLTMLETTRQNIIDNLRQQGIILDSPTLEPTQLLQRVVMKRCIYGVDINPMAVELAKVSLWLHSFTVGAPLSFLDHHLRCGNSLIGTTAKDAEAAMIEEEGGQLTLLTGPFVGLLRAAEIMRGISTLSDATFAEVEASEQLFRDFDSQAKPYKRLLDVFLSRFFGVKTAIEFLQRYGGNISAINWDKLPRSDQGILDQAASLYKSKRFFHWDLEFPEVFIDLDSASWKDNPGFDAVIGNPPYVRQEGLKDIKPFLKENYQSFHGVADLYVYFVEMGLLSLQQGGHLGLIISNKFMRANYGTKLRQFLTQQTTIKEIIDFGELPVFSEAATFPSILLIENNIVGQQNVLVSKIKSLKFNSLIDVINDLSYYVCENSLSVEGWSLAKNQIATIVEKLQKKAVFLSEYVNNQIYLGIKTGCNEAFVIDKNIKEYLVKTDPNNQQFIKSLIVGDDLRKYEIKNRDLYLLLIPWGWTKQKIDTDQEKLAWNYLSSLYPSLTKHLEGFAEKARKRCDQGQFWWELRPCTYYDIFEKPKIIYPDIAKESRFTLDNNGFYSINTTYLIPSQSYYLLALLNSSLIFFYMSQNSAVLGDTEKQGRLRFFGQYMENIPIRKISFSTNSDHRQQSLEKLIKSYQEKQEILKEIEEHIRREETDIVHDILAYLAEQMIEINREKQKEIKSFLRYLERIIGSAIDNLTNKSKIQNYLGDYQKSEPHLSCDQLWEILKKNKKKISVNLLDRQIQETLEKEYQTSLDKLLPLKQQLSATDELIDIIVYKLYGLSEEEIKIIEGRE
>CP011304.1|AKE62485.1|132873_133215_-|HicB-protein
MYTTTYKGYTGKFEIDFDDNLISGIVIDIKDVITFHGKTIEEAVQCFHESVDDYLEFCQELGEEPDQPFSGKLPYQTTPEIHRKIYLAATKKGKSINAWMDEVLSQKAQELVG
>CP011304.1|AKE62496.1|142853_143780_+|Ribosomal-large-subunit-pseudouridine-synthase-D
MNQLNLEVAGKKERLDAWMGSQLPDLSRSRLQKLIEQGYIQLNGQICTNKNTKVAQGDRLKITIPDSQPLQLSAEAIDLDILYEDEYLIIINKPADLVVHPAPGHESGTLVNALLHHCPNLAGIGGIQRPGIVHRLDKDTTGAIVIAKTDQAHQHLQAQLKTKTARREYMALVHGVPKSETGTIDLSIGRHRSERQKMAIITVEKGGRNAVTHWQVKERLGNYTLMEFRLETGRTHQIRVHSSHIGHPILGDPLYSSGRSIGINLPGQLLHAHRLILIHPVTGESLEAIAPLPAIFPKVLAILRQRNP
>CP011304.1|AKE62497.1|143776_144778_-|putative-BioA-alternative-protein
MNKQIAGDRLRIGVLGFGGLGQAAARILAPKQEMLWTAAADKAGFAYHKDGLDVNTCNKIYHDQGSIGYLENYGSLSQNSIEELIKTADVEGYFLALPNLPNNFMADIAKTFIRLGWRGVLVDALKRTSAMEQILALQTDLEAAGITYMTGCGATPGLLTAAAALAAQSYAEIHSVKITFGVGIANWEAYRATIREDIAHLPGYNPETAHQMSDAEVEMLLNKTNGILSLENMEHADDIMLELAGICGRDRVSVGGVVDTRNPKKPLSTNVKVTGRTFEGKISTHTFTLGDETSMAANVCGPAFGYLKAGVSLHRRGIYGLWTAAEIMPQFVR
>CP011304.1|AKE62498.1|145094_145304_+|Cellulase-M
MESLEFIIYPDGRVMEKVTGIVGSSCQEVTAAIEAQLGQLMSQEKTSDYYHQTVSQSEKVSNAATFSDW
>CP011304.1|AKE62499.1|145348_145735_+|hypothetical-protein
MSHFSNIKTKIRDLSYLKAALSDMGMEWKEGSHPVKGYQGQTLTAEVVIEQDNNYDIGFRWNGNEYELVADLQYWQQPLTVEGFLRKVNQGYAYHTILAETAKQGFQVAAQEKNTDGSIRLVVQRWSA
>CP011304.1|AKE62500.1|145734_146142_+|Ferredoxin
MADFSPERSGFEPELGGFLRDSPDRTGFEPELGGLLRQKAVYVDEVTCIGCKHCAHVAPNTFFIEGEYGRSRVYNQDGDEEEIIQEAIETCPVNCIHWVNYNQLSSLEEERKHQVIKQLGFPQIHKKFSPADLDL
>CP011304.1|AKE62501.1|146257_146560_+|hypothetical-protein
MNTQLIDSLARIILSLSEEERELLNRKIESEQRENLQINAQILDLETRVKQYENQYRMSSEEFYPKFRSGELGDAMDYFEWNVYYEMLLAARKEISLRSN
>CP011304.1|AKE62502.1|146560_146950_+|hypothetical-protein
MEIADYIRKVKRKLSESSIVNSFTIVDERILFDRGYFRARVLLTNGDFLEIAEAFTSIDQRIVTISYRYQWMDASKQKLRKRWDNVEHFPDLPNFPDHVHVGDELNVQPGESRNILQIITVIEREIEIL
>CP011304.1|AKE62503.1|147217_147934_+|Trk-system-potassium-uptake-protein-TrkA
MYVLIGGAGMMGLGLAQQLLDLGHTVAIVDVDPLACRFAREKIGVMAFEGSAVSTKVLLEAGIRQAKAVVAALRDDAMNLALVTLSRSYGISHIVVRMCDREFLEAYRLAGASHIISTIDLAVATMANAIEYPEVESMMHFEQGQVEVLKLPVPKDCYVAGRTVAQIAQDANFPTGSLIIGYQCHTSASLEIPNGNTVLEAGSTILVVTRPEFVKPMIDYLGIQTNHRPRIEVSHPNL
>CP011304.1|AKE62504.1|147890_149519_-|Na+/H+-antiporter
MRGELLVAWAAQQKSLDSSSAVNSQTVGDIPELVLILILLLLIATAVALITQRLRISYVAGLVLAGLPITDLLSRRIGLDPFLVLNLFLPILIFEAAINTDISRLRSTFKPIALLAGPGSVFSAAIIAVLVKFGLGLDWIPALLVGVILANTDTVSMIAVFKEIRVPSRLSTIVEGETLFNDAAALVTFNLLLVIYATGTISTTQVIKEVLIVALGGGLVGAVLGYLCLPIYVRLRDPLSSLLLTVALALGAFQLGQFLGVSGAVAVVIAGLVFGNLGLPRSASASDRITLISFWEYAGFIVNTFIFLLIGIEINPLTLWQTLPSIVLVILAYQLGRILSVYSLLWVLRRIDRPIPLRWQHILILGNIKGSLSMALAVAIPLTLTGRELIIELVFGAVLFSLVIQGLALPWLIKKLDISQVSAVTREIGQLQLQLIASKAAQDELANLLKSGVLPKAVYEELWASYQAKVAVSERVLRDAYNQSRSGQMEPKYGQLDAIRRRLFLAEKAALGDALRKRIVPEDLVQSYVKGLDEKLLSLDDD
>CP011304.1|AKE62505.1|149910_150045_+|hypothetical-protein
MVDFYCLFWTFKGLACLETIAKSRLSLLAKPNTFANYPFFPEQR

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Crispr_ID: CP011304_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_2

455953-456066

TypeV

Consensus_repeat	Method
AATCTCTAATAGGGGTTAAGATTAATGGGAACGCTGTAGGGTT	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of CP011304_2

>merge|CP011304|2|455953-456066|CRISPRCasFinder
AATCTCTAATAGGGGTTAAGATTAATGGGAACGCTGTAGGGTTGATTCATGAATCAACCCTACAAAGTATTAATCTCTAATAGGGGTTAAGATTAATGGGAACGCTGTAGGGTT

>CP011304|2|2|455953-456066|CRISPRCasFinder
AATCTCTAATAGGGGTTAAGATTAATGGGAACGCTGTAGGGTT	GATTCATGAATCAACCCTACAAAGTATT
AATCTCTAATAGGGGTTAAGATTAATGGGAACGCTGTAGGGTT

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE62816.1\|460815_460959_+\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|376616
CP011304.1\|AKE62805.1\|448700_448925_+\|Helix-turn-helix-protein,-CopG-family	unknown	unknown	unknown
CP011304.1\|AKE62808.1\|451699_452884_-\|LSU-m5C1962-methyltransferase-RlmI	unknown	unknown	gnl\|CDD\|224017
CP011304.1\|AKE62822.1\|469116_470334_-\|Cell-division-protein-FtsW	unknown	unknown	gnl\|CDD\|279444
CP011304.1\|AKE62817.1\|461113_462589_-\|Cytosol-aminopeptidase-PepA	unknown	unknown	gnl\|CDD\|234863
CP011304.1\|AKE62818.1\|463036_464164_+\|Aldo/keto-reductase-family	unknown	unknown	gnl\|CDD\|224370
CP011304.1\|AKE62815.1\|459459_460674_-\|Mobile-element-protein	cas14j	-	gnl\|CDD\|223747
CP011304.1\|AKE62814.1\|458139_459369_-\|TPR-repeat-containing-protein	unknown	unknown	gnl\|CDD\|276809
CP011304.1\|AKE62813.1\|456184_458062_-\|Cell-division-protein-FtsH	unknown	unknown	gnl\|CDD\|273520
CP011304.1\|AKE62806.1\|448928_451241_+\|Type-I-restriction-modification-system,-restriction-subunit-R	unknown	unknown	gnl\|CDD\|226581
CP011304.1\|AKE62820.1\|465582_466806_+\|carboxyl-terminal-processing-protease	unknown	unknown	gnl\|CDD\|272970
CP011304.1\|AKE62821.1\|467238_468543_+\|Branched-chain-amino-acid-ABC-transporter,-amino-acid-binding-protein	unknown	unknown	gnl\|CDD\|380569
CP011304.1\|AKE62810.1\|453992_454106_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE62804.1\|448447_448720_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367913
CP011304.1\|AKE62807.1\|451322_451733_+\|Glyoxalase/bleomycin-resistance-protein/dioxygenase	unknown	unknown	gnl\|CDD\|319925
CP011304.1\|AKE62811.1\|454062_455436_-\|Protein-of-unknown-function-DUF512	unknown	unknown	gnl\|CDD\|132322
CP011304.1\|AKE62803.1\|447767_448001_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE62809.1\|453070_453865_+\|ABC-type-transport-system-permease-component	unknown	unknown	gnl\|CDD\|215575
CP011304.1\|AKE62819.1\|464296_465376_+\|Fructose-bisphosphate-aldolase-class-II	unknown	unknown	gnl\|CDD\|181691
CP011304.1\|AKE62812.1\|455541_455874_-\|Phosphomannomutase	unknown	unknown	gnl\|CDD\|372702

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE62816.1\|460815_460959_+\|Mobile-element-protein	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	2.03639e-09
CP011304.1\|AKE62808.1\|451699_452884_-\|LSU-m5C1962-methyltransferase-RlmI	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	4.87197e-118
CP011304.1\|AKE62822.1\|469116_470334_-\|Cell-division-protein-FtsW	gnl\|CDD\|279444	pfam01098, FTSW_RODA_SPOVE, Cell cycle protein. This entry includes the following members; FtsW, RodA, SpoVE.	1.52131e-103
CP011304.1\|AKE62817.1\|461113_462589_-\|Cytosol-aminopeptidase-PepA	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
CP011304.1\|AKE62818.1\|463036_464164_+\|Aldo/keto-reductase-family	gnl\|CDD\|224370	COG1453, COG1453, Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only].	4.88108e-142
CP011304.1\|AKE62809.1\|453070_453865_+\|ABC-type-transport-system-permease-component	gnl\|CDD\|215575	PLN03100, PLN03100, Permease subunit of ER-derived-lipid transporter; Provisional.	5.39794e-107
CP011304.1\|AKE62814.1\|458139_459369_-\|TPR-repeat-containing-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.41036e-22
CP011304.1\|AKE62813.1\|456184_458062_-\|Cell-division-protein-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
CP011304.1\|AKE62806.1\|448928_451241_+\|Type-I-restriction-modification-system,-restriction-subunit-R	gnl\|CDD\|226581	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	2.70562e-106
CP011304.1\|AKE62820.1\|465582_466806_+\|carboxyl-terminal-processing-protease	gnl\|CDD\|272970	TIGR00225, Tail-specific_protease, C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database. [Protein fate, Degradation of proteins, peptides, and glycopeptides, Protein fate, Protein modification and repair].	4.44049e-140
CP011304.1\|AKE62821.1\|467238_468543_+\|Branched-chain-amino-acid-ABC-transporter,-amino-acid-binding-protein	gnl\|CDD\|380569	cd06346, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.	7.99502e-112
CP011304.1\|AKE62804.1\|448447_448720_+\|hypothetical-protein	gnl\|CDD\|367913	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system. BrnT is a ribonuclease toxin of a type II toxin-antitoxin system that exhibits a RelE-like fold. The antitoxin that neutralizes this toxin is pfam14384. BrnT is found in bacteria, archaea, bacteriophage, and plasmids. BrnT-BrnA forms a 2:2 tetrameric complex and autoregulates its own expression, which is induced by a number of different environmental stresses. Expression of BrnT alone results in cessation of bacterial growth which can be rescued after subsequent expression of BrnA.	7.52161e-27
CP011304.1\|AKE62807.1\|451322_451733_+\|Glyoxalase/bleomycin-resistance-protein/dioxygenase	gnl\|CDD\|319925	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	4.43517e-37
CP011304.1\|AKE62811.1\|454062_455436_-\|Protein-of-unknown-function-DUF512	gnl\|CDD\|132322	TIGR03279, cyano_FeS_chp, putative radical SAM enzyme, TIGR03279 family. Members of this protein family are predicted radical SAM enzymes of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.	0
CP011304.1\|AKE62815.1\|459459_460674_-\|Mobile-element-protein	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.51424e-29
CP011304.1\|AKE62819.1\|464296_465376_+\|Fructose-bisphosphate-aldolase-class-II	gnl\|CDD\|181691	PRK09196, PRK09196, fructose-bisphosphate aldolase class II.	0
CP011304.1\|AKE62812.1\|455541_455874_-\|Phosphomannomutase	gnl\|CDD\|372702	pfam13747, DUF4164, Domain of unknown function (DUF4164). This is a family of short, approx 100 residue-long, bacterial proteins of unknown function. There is several conserved LE/LD sequence pairs.	1.09249e-07

>CP011304.1|AKE62812.1|455541_455874_-|Phosphomannomutase
MANETVTYSLEAVLTRIEGKIDSLEKRIDERFDKVDERFDKIEERLTKVEIGQVELKGEIKALDQRLTTEIKGLTARVAYQEFTNRGILIALVVAILGGAAKLFGFFPNP
>CP011304.1|AKE62811.1|454062_455436_-|Protein-of-unknown-function-DUF512
MSELTIRPAKISGVIPDSIAAEVGFEIGDSLVSINGNRPRDLIDYQFLCADEFLTLEVLDSQGKTHQVKIEKDYHEDLGLEFETALFDGLIQCNNKCPFCFIDQQPEGKRETLYYKDDDYRLSFLYGSYLTLTNLTSKEWQRIEKMRISPLFVSVHATEPDLRIRLLKNPRAGQILDHLKWLQARQLQIHAQVVVCPNINDGIHLERTLLDLVSFHRGDIPCVESIAVVPVGLTRFRPQEDELIPVSQEKAREVIEQVQTLQKKFRQEFGSNVVWLADEWFLIARVDLPPQSHYEDYPQIGNGVGSIRQFIRDFQKTAKKLLPAQISPSRRLIWVVGNAVEQAFQPLVKQLNKVQGLTVELVALNSDYWGQEITVTGLLTGQDILKGLQGKNLGDGVLLPSLMLKHGEAVFLDDLTLETVINQLGVPIYPVLGVEELIKTCLALNPFSDFLSHIGEQ
>CP011304.1|AKE62810.1|453992_454106_+|hypothetical-protein
MRPYHWRNNIIVGANCIRPLLITFTAHQYVRESQRKD
>CP011304.1|AKE62809.1|453070_453865_+|ABC-type-transport-system-permease-component
MPRKSDAASGLSLWFQRLGAAGLLAGQTFLHILNGKIHRRNTLEQMSIVGPESLTIALITAAFVGMVFTIQVAREFIFFGAGSFVGGVLSLALTRELAPVLTAVVVAGRVGSAFAAEIGTMRVTEQIDALYILKTDPIDYLVIPRVIACSLMLPLLTIISLVTGLLGGLFISDSLYGISYSLFLQSAQNFMETWDLISSMLKSLIFGVLIAIIGCSWGLTTTGGAKGVGQSTTTAVVTSLLAIFVANFFLSWLMFQGTGNAEIG
>CP011304.1|AKE62808.1|451699_452884_-|LSU-m5C1962-methyltransferase-RlmI
MPDLAKIILKNHKIDAVKRFHPWIFSGAIKEMEGEVKEGAIVEVYSDRGEYLATGLYNPSNIAVKILSFQKVSDIAQLFLEKFQNAYRLRQQIGLVDNPKTNCYRLINAEGDGLPSLIVDWYNGTAVIQAYSLALYQRLDLIVDCLKTIYADNLRAVYDKSAAVLAKSAHISENKYLFGQKTSDEVLESGHRFIIDWEKGQKTGFFLDQRENRALLSQYSHNKRVLNTFSYSGGFSVYAMQAGAALVDSVDSSHGAIDLTEKNIALNNLSQVPHQSYSADVFNFLRDCQEDYDLIVLDPPAFAKSIQSRHQAVMAYKRLNYQAFQKIRPQGIIFTFSCSQVVNEEHFQGAVMAAAIESARPVRILARLSQPADHPTSIYHSEGSYLKGLVLAVD
>CP011304.1|AKE62807.1|451322_451733_+|Glyoxalase/bleomycin-resistance-protein/dioxygenase
MNNPPDSPFNYTEAFIALGTSNFDRSVQFYRQLLQQEPSPYLAAVYAEFRLINLKLGLFCPKESHREEFGDSRGSGMSICFEVESLEKAIEHWSEIGYGARGEISQASHGSEIYIYDPDGNRLIFHQSTAKTNPFR
>CP011304.1|AKE62806.1|448928_451241_+|Type-I-restriction-modification-system,-restriction-subunit-R
MNEAETRAELIDPALKAAGWGVIPDSKIRREVIAPGRLVGSGQRSSSKTCDYVLVYRGHKLATLEAKKRDAHPTEGLGQAKDYAERLQTPFALCTNGLRIYRVDTRAGKEGYIDRYPTQEELWAATYPDSNHWRDRFATVPPDNKSGMRESRYYQHNAIQAVLEAIAAGQKRMLLTMATGTGKTTIALQIAWKLFHSSWNLSGEPTHRPCILFLTDRNILANQALTEFTAFPEDALVRIEPKNIQKTKKVPKNGSVFFSIFQTFMTQNGEELAPNFLEYAPDFFDLVIVDECHRGGANDESTWRKILEYFAPAVQLGLTATPKRDLNGDTYKYFGEPLYTYSLKEGINEGYLTPFKVVEFTTSLDEYQYDPDDELIEGDIDENKVYTESDFNRIIEIEERERQRVKIFMEAIDQNEKTLVFCANQDHALAIRDLINQMAISSDPNYCARVTANDGSLGETHLKKFQDNEKRLPTILTTSRKLSTGVDARNLRNIVLLRPVKSMIEFKQIIGRGTRLFDNKDYFTIYDFVKAHENFNDPEWDGEPQEPVVIDPRPRPEPPDAIEDPLDEPDPLPIRQKIKIKLADGKERELEHTQRTTFWNADGKPISAEEFIQQLFGDIPDLFQDEAELRHLWGRPDTRKSLLTGLAEKGYGEEQLQAIARITNTENSDIYDVLTYIAYAARPLTREERVIKHKDLIFSKYTRKQREFLDFILDQYIRSGVGELDREKLPKLIEIKYHTINEAISQLGEIQEISGVFMSFHAYLYWSDAA
>CP011304.1|AKE62805.1|448700_448925_+|Helix-turn-helix-protein,-CopG-family
MKAEEFDAKFDAGEDMSEFLDFSTARRPNREKQKIELDLPFWIIRKLEAEAQKEGVSTQTFLENYLARHIASAP
>CP011304.1|AKE62804.1|448447_448720_+|hypothetical-protein
MPSFEYDENKSKTNQQKHGIDFIEAQKLWEDDNLLEITGKSETEPRYLIIGQVQDKHWTAVITYRSEMIRIISVRRSRTNEVTWYESRRI
>CP011304.1|AKE62803.1|447767_448001_+|hypothetical-protein
MIIQKIIDELHEIPEDHLSQIYEIVRSFRLELERERSHNPDDTPDEEIVANLKQGMQEALGGNTIPLDRMWEGIDVD
>CP011304.1|AKE62813.1|456184_458062_-|Cell-division-protein-FtsH
MSIKSKPPSQSRLIGNVLLAVGGLFLIVNLLFPQLFGPSVPKVPYSLFIDQVEDGNVARVSVGQNEIRYQLKNDQEGNYGRIFSTTPIFDLELPKRLEAKGVEFAAAPPPKNGWIGSVLSWVIPPLIFVGIWQFFLARSGGGGPAGALSITKSRAKVYVEGDTTKTTFEDVAGVEEAKTELAEIVEFLKYPQRYIQIGARIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCIIFIDELDAIGKSRANGNFMGGNDEREQTLNQLLTEMDGFNAGDATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGRLKILEIYAGKVKLGSDVDLKQIATRTPGFAGADLANLVNEAALLAARNQRSTVAQEDFNEAIERVVAGLEKKSRVLSEKEKKIVAYHEVGHALVGAVMPGGGKVAKISIVPRGMAALGYTLQMPTEDRFLMDDTELRDQIATLLGGRAAEEIIFGSITTGAANDLQRATDLAERMVTTYGMSKTLGPLAYEKGQQNSFLGDGMMNPRRLVSDDTAKAIDNEVKEIVENGHQQALDILAQNRDLLEEIAQEILSKEVIEGEQLQALLERVKPLDREPVTV
>CP011304.1|AKE62814.1|458139_459369_-|TPR-repeat-containing-protein
MGDACKINKTSVEIRMQGLLRKLWRAIENFFTRLLGGQEGKGKVQAIESVPLTDTDYEFLYMQLLDGVSHGWHEGRILRFFEKLGDRGRQKDWVEWLERFGTRLQSSASLNQLLASRMIRLGELARAFPGIERIGEASYEIGYQLYTKETATLIWEYAGEDEAPGSYSLPQPPENLLYSGETSDFNGNDPENPQLETLTLDELFNRLQNDPTLAGQMAEQLGIENKDAESIIDSLIAQFSPQEAKTPETAEDWFNQGLEQANLGNWSNAIADWEQALTIDPQLASAWHNRGGALAMIGNYEEALNSYDRALEITPNDHQVINARGSALYGLQRWQEALECWQQVLEADDNFYQAWYNRGSTLENLGETQAAIACYQKALGIAPDFELAQTRLEALLGQKPPEDDGNPPA
>CP011304.1|AKE62815.1|459459_460674_-|Mobile-element-protein
MITLTYQYKLKVNKKQEREIVHILDVCKSVYNYALSERKDWLNSRKCLADRCSLVSEYIIPADQPYPNYFVQAKNLTEAKKVDPILKTVNAQVLQQVLKTVDKAFDHIKSKGFGFPRFKKKMRSFVFPALSKNFLGDEYLNFPQLGKIRIRKSREYPSGFEPKQARIIQKASGFYVLVSFQSTELVPDMTVGKTCLGIDAGIESFVATSRGDLIKAPRFLLKVQSKLKLLQRRLKHQVKGSKNWLKLQDKIARLHEKVSNTRRDWHFKLAHYLCDLADNIFVEDINFVSWSRGIVRKQSLDSGIGSFINEILPFVAWKRGKYYLKVDKNGTSQECPNCGAITGKKALSERVHRCDSCGHIEPRDTASAKVIENRGKNAVGLTVLENARGGDLTGIDWVKLGRSS
>CP011304.1|AKE62816.1|460815_460959_+|Mobile-element-protein
MAAKYFDNKPYFWAGAYFVASCGDVTVEQLKKYVENQNSPKVERLLR
>CP011304.1|AKE62817.1|461113_462589_-|Cytosol-aminopeptidase-PepA
MDIRSTDTSLLTWTGDTLALGLPEGAVEIAGELAELNNKLGGTLEELISETEFEGKLGSSAATRLGGGGPIRKLILVGLGKTADFDLQTLRLAAAAIARLAKQQKSQALAISLPVVGDQSATAGAITEGLLLANHQDTRFKSTKEEKGAKLATVELLGLGEQSSAIAKAEQICSGVILARELVNAPANTVTPLTMAETAEQIAAEYGLSLNILEQEECESLGMGAFLGVAKASDIPPKFIHLIYKPQGNPKRKLAIVGKSLTFDSGGLNIKGAGSGIETMKMDMGGGAATLGAAKAIAQLRPEVEVHFICPATENMISGRAMHPGDILTASNGKTIEVNNTDAEGRLTLADGLVFAEKLEVDAIVDLATLTGACVVALGEDIAGLWSSDESLGDQLQEAAKLAGEKFWPMPLEEKYFEGMKSQIADMKNTGPRPGGSITAALFLKQFIDNTPWLHLDIAGPVWSDKENGVNNSGATGFPVRTLVNWVMANN
>CP011304.1|AKE62818.1|463036_464164_+|Aldo/keto-reductase-family
MRYRRFGRTNWQFSLFSLGTMRCLSSESVFAATLDRALELGINHLETARGYGNSEVFLGRYLQRQGVRERVYLTTKLVPTPDRQTMEKAIAESLERLQLNHLDCLAIHGINTREHLNWIKDPQGCMKAVFLAQEAGKIGHIGFSTHAPLEIILETINTDFFAFVNIHYYFFWQRQQPAIALAQAKDMGVFIISPADKGGGLHRPPKKLEELCAPFSPLELNYRFLLSDPRITTLSVGAAIPEELESIINVCERDQPLDAAEIAVFKRLEAHLTDKLATDLCSQCYQCLPCPENINIPEVLRLRNLAVAYEMTDFGQYRYQMLENAGHWFPGRKANNCTECGDCLPRCPEKLPIPRLLFDTHELLNGPPQRRLWSS
>CP011304.1|AKE62819.1|464296_465376_+|Fructose-bisphosphate-aldolase-class-II
MALVPMRLLLDHAAENGYGIPAFNVNNMEQIQAIMQAAAATDSPVILQASRGARKYAGENFLRHLITAAVETYPHIPIVMHQDHGNEPATCYSAIRNGFTSVMMDGSLEADAKTPATYEYNVNVTAEVVKVAHSIGASVEGELGCLGSLETGKGEAEDGHGFEGELDHSMLLTDPDEAVDFVERTQVDALAVAIGTSHGAYKFTRKPTGEILAISRIEEIHNRLPNTHLVMHGSSSVPEDLLELINQFGGAIPETYGVPVEEIQKGIKSGVRKINIDTDCRLAITAAVREALFSNPKEFDPRFFLKPSITYMQKVCADRYQQFGTAGNASKIKQMSLDDYAAKYAKGQLTQVSKKVVAV
>CP011304.1|AKE62820.1|465582_466806_+|carboxyl-terminal-processing-protease
MWAGLLVGFWFCLTWMAWTPTAAAFSEEQKLLLQSWRLVNQSYYDDTFNHQNWWQVREQFIKKPLNDRTAAYNAIEQMLATLDEPFTRLLRPDQYHNLQISTTGELSGVGLQININPDNGYLEVVAPLAGSPAEAAGLTSHDRILFIDGIDTTTLTLDAAAAKMRGTAGTEVSLVILPYQKSQPKTLSLTRQRISLSPVVAVLDKNSSSLPIGYVRLNQFSANAAKEVSEAVTNLQKQGAKGYILDLRNNPGGLLQAGIEIARMWINQGTIVYTVNREGIADSFAAAGNALTDAPLVVLVNQGTASASEILAGALQDNQRGVLVGEKTFGKGLIQSLFELPDGAGLAITVAKYETPAHHDIHKLGIMPDQVVAQEPITYQEIGTEKDSQYQTAIQFLNQNTVLAKAS
>CP011304.1|AKE62821.1|467238_468543_+|Branched-chain-amino-acid-ABC-transporter,-amino-acid-binding-protein
MQRYIRSPLALTLSISLLANFLTACNNAQTPDNTASSPTTTTPGDQGLKLGALLPITGDLAAIGQNMPEASALAVETINACGGVNGKPVTLVKEDDQTDPAAGASAMTKLAEVDKVAGVIGSFASSVSGAAVDVAVRKKVMLVSPGSTSPVFTDRAKKGDFKGFWARTAPPDTYQAQALAVLAKKKGFQNVATVVINNDYGVGFEREFVSAFDKLGGTITNKQNPVRYDPKAATLDSEAAAAFANQPDAVAAVLYAETGSLLLQAAYKQGLTKGVTVLLTDGVYSEDFTKQVGKGTDGKSIIAGALGTVPGADGQALRAFTSLWKEKTGKDVTAFVPHTWDAAILLMLAAEAAKSNTGEGIQSKIREVANGPGTEVTDACQAMEMIRKGEDINYQGASGNVDIDENGDVVGSYDVWTVKDDGTLKVIDKVTPNQ
>CP011304.1|AKE62822.1|469116_470334_-|Cell-division-protein-FtsW
MQDTSSRKISVWQYIIPIFDPDVKNWSAEARLLRWMTFLWLSVGLVVLFSASYALADSRFDNGLYYFIRQLIWLWIGLIGFNFLVRLPIEKLLKIAPWMILLVLGLILITLIPGLGANINGATRWIKIGPILLQPSEFMKPFLVLQGAAVFGGWPRLNVNQRLTWIAIFGLILAGILLQPNLSTTALCGITLWLIALASGLPLSYMTSTALLGLTMAVVSVTFREYQRKRILSFLDPWQDPRGDGYQLVQSLLAIGSGGTTGSGYGLSQQKLFYLPFPDTDFIFAVFGEEFGFIGGILLLIMLFLYATLALIVAVKCRHRIKKLVAIGAMVILIGQSLLNMGVATGSLPTTGLPFPLFSYGGSSSLASLFLAALLIRVAREENDPDPVPTSKKSPQKTVSVFSHQ

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Crispr_ID: CP011304_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_3

507958-508044

Orphan

Consensus_repeat	Method
CAGTAAACAGTAATCGGTGCAAAGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP011304_3

>merge|CP011304|3|507958-508044|CRISPRCasFinder
CAGTTAAAAGTAATCAGTAAACAGTAATCGGTGCAAAGACAGCAGAAAACTGCCATAATCAGTAAACAGTAAACAGTAAACAGTAAT

>CP011304|3|3|507958-508044|CRISPRCasFinder
CAGTTAAAAGTAATCAGTAAACAGTAAT	CGGTGCAAAGACAGCAGAAAACTGCCATAAT
CAGTAAACAGTAAACAGTAAACAGTAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE62857.1\|504194_504485_-\|Circadian-oscillation-regulator-KaiB	unknown	unknown	gnl\|CDD\|239276
CP011304.1\|AKE62860.1\|508150_508474_+\|Phosphomannomutase	unknown	unknown	gnl\|CDD\|372702
CP011304.1\|AKE62867.1\|517376_517943_+\|Recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
CP011304.1\|AKE62866.1\|516676_517210_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379510
CP011304.1\|AKE62851.1\|499935_500091_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE62865.1\|514496_516536_-\|Biosynthetic-arginine-decarboxylase	unknown	unknown	gnl\|CDD\|235427
CP011304.1\|AKE62869.1\|519654_520074_-\|mutator-protein	unknown	unknown	gnl\|CDD\|240038
CP011304.1\|AKE62859.1\|505643_507845_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225752
CP011304.1\|AKE62853.1\|501114_502194_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376004
CP011304.1\|AKE62855.1\|502542_503505_+\|CsaB-protein	unknown	unknown	gnl\|CDD\|132648
CP011304.1\|AKE62854.1\|502393_502522_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE62864.1\|512403_514389_-\|Exoribonuclease-II	unknown	unknown	gnl\|CDD\|223631
CP011304.1\|AKE62858.1\|504481_505348_-\|Chemotaxis-regulator---transmits-chemoreceptor-signals-to-flagelllar-motor-components-CheY	unknown	unknown	gnl\|CDD\|381085
CP011304.1\|AKE62856.1\|503510_504134_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|335717
CP011304.1\|AKE62850.1\|497770_498781_-\|EcoRI-methylase/methyltransferase	unknown	unknown	gnl\|CDD\|372662
CP011304.1\|AKE62862.1\|509314_509824_-\|Inorganic-pyrophosphatase	unknown	unknown	gnl\|CDD\|376376
CP011304.1\|AKE62861.1\|508511_509198_-\|N-acetylmannosamine-6-phosphate-2-epimerase	unknown	unknown	gnl\|CDD\|234907
CP011304.1\|AKE62863.1\|511053_512232_-\|Permease	unknown	unknown	gnl\|CDD\|223701
CP011304.1\|AKE62852.1\|500100_500967_-\|Carbon-dioxide-concentrating-mechanism-protein-CcmO	unknown	unknown	gnl\|CDD\|226943
CP011304.1\|AKE62868.1\|518186_519554_-\|carboxyl-terminal-protease	unknown	unknown	gnl\|CDD\|272970

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE62857.1\|504194_504485_-\|Circadian-oscillation-regulator-KaiB	gnl\|CDD\|239276	cd02978, KaiB_like, KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensory domain with a TRX fold which is involved in the SasA-KaiC interaction. This domain shows high sequence similarity with KaiB. However, the KaiB structure does not show a classical TRX fold. The N-terminal half of KaiB shares the same beta-alpha-beta topology as TRX, but the topology of its C-terminal half diverges.	2.65846e-30
CP011304.1\|AKE62860.1\|508150_508474_+\|Phosphomannomutase	gnl\|CDD\|372702	pfam13747, DUF4164, Domain of unknown function (DUF4164). This is a family of short, approx 100 residue-long, bacterial proteins of unknown function. There is several conserved LE/LD sequence pairs.	1.79074e-05
CP011304.1\|AKE62867.1\|517376_517943_+\|Recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	2.90574e-114
CP011304.1\|AKE62866.1\|516676_517210_+\|hypothetical-protein	gnl\|CDD\|379510	pfam14221, DUF4330, Domain of unknown function (DUF4330). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 165 and 177 amino acids in length. There is a single completely conserved residue G that may be functionally important.	3.90602e-73
CP011304.1\|AKE62865.1\|514496_516536_-\|Biosynthetic-arginine-decarboxylase	gnl\|CDD\|235427	PRK05354, PRK05354, biosynthetic arginine decarboxylase.	0
CP011304.1\|AKE62869.1\|519654_520074_-\|mutator-protein	gnl\|CDD\|240038	cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.27463e-32
CP011304.1\|AKE62859.1\|505643_507845_-\|hypothetical-protein	gnl\|CDD\|225752	COG3211, PhoX, Predicted phosphatase [General function prediction only].	2.8503e-98
CP011304.1\|AKE62853.1\|501114_502194_+\|hypothetical-protein	gnl\|CDD\|376004	pfam18578, Raf1_N, Rubisco accumulation factor 1 alpha helical domain. This is the N-terminal alpha helical domain found in Rubisco accumulation factor1 (Raf1). Raf1 from Arabidopsis thaliana consists of an N-terminal alpha-domain, a flexible linker segment and a C-terminal beta-sheet domain that mediates dimerization. The alpha-domains mediate the majority of functionally important contacts with RbcL (Rubisco large subunits) by bracketing each RbcL dimer at the top and bottom. The alpha-domain alone is essentially inactive.	2.71683e-58
CP011304.1\|AKE62855.1\|502542_503505_+\|CsaB-protein	gnl\|CDD\|132648	TIGR03609, S_layer_CsaB, polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	6.26301e-128
CP011304.1\|AKE62864.1\|512403_514389_-\|Exoribonuclease-II	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	1.70348e-132
CP011304.1\|AKE62858.1\|504481_505348_-\|Chemotaxis-regulator---transmits-chemoreceptor-signals-to-flagelllar-motor-components-CheY	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	4.6923e-17
CP011304.1\|AKE62856.1\|503510_504134_+\|hypothetical-protein	gnl\|CDD\|335717	pfam04313, HSDR_N, Type I restriction enzyme R protein N-terminus (HSDR_N). This family consists of a number of N terminal regions found in type I restriction enzyme R (HSDR) proteins. Restriction and modification (R/M) systems are found in a wide variety of prokaryotes and are thought to protect the host bacterium from the uptake of foreign DNA. Type I restriction and modification systems are encoded by three genes: hsdR, hsdM, and hsdS. The three polypeptides, HsdR, HsdM, and HsdS, often assemble to give an enzyme (R2M2S1) that modifies hemimethylated DNA and restricts unmethylated DNA.	0.000889924
CP011304.1\|AKE62850.1\|497770_498781_-\|EcoRI-methylase/methyltransferase	gnl\|CDD\|372662	pfam13651, EcoRI_methylase, Adenine-specific methyltransferase EcoRI. This methylase recognizes the double-stranded sequence GAATTC, causes specific methylation on A-3 on both strands, and protects the DNA from cleavage by the EcoRI endonuclease.	3.36585e-177
CP011304.1\|AKE62862.1\|509314_509824_-\|Inorganic-pyrophosphatase	gnl\|CDD\|376376	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase.	3.09675e-83
CP011304.1\|AKE62861.1\|508511_509198_-\|N-acetylmannosamine-6-phosphate-2-epimerase	gnl\|CDD\|234907	PRK01130, PRK01130, putative N-acetylmannosamine-6-phosphate 2-epimerase.	1.70163e-115
CP011304.1\|AKE62863.1\|511053_512232_-\|Permease	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	2.28416e-51
CP011304.1\|AKE62852.1\|500100_500967_-\|Carbon-dioxide-concentrating-mechanism-protein-CcmO	gnl\|CDD\|226943	COG4577, CcmK, Carbon dioxide concentrating mechanism/carboxysome shell protein [Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion].	2.19353e-47
CP011304.1\|AKE62868.1\|518186_519554_-\|carboxyl-terminal-protease	gnl\|CDD\|272970	TIGR00225, Tail-specific_protease, C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database. [Protein fate, Degradation of proteins, peptides, and glycopeptides, Protein fate, Protein modification and repair].	3.595e-138

>CP011304.1|AKE62859.1|505643_507845_-|hypothetical-protein
MSISRRNFLTFLTATAGVSFFSLQEKKYSSLISSPAIAANSFGLNFAPVKLPIPLKIDGMSDESQKNAYQTYKVLDDLVLPQGFTSDVLAQWGDAVGDSRFGYNNDYLSFIETSAGQGYLTVNFEYISGRTWLQTFEQVIGKTLPVKEVREKTNEKGEIAAYRLQDASLKAKIEEISLEGLIDQGIGVISLAKDQTGKWQRTYSKADRRITGISGLKDGRYLKATGPAVAIFTKTDKLGYDDGLGAKIIGTFQNCAGGTTPWGTVFSAEENFQDQVTEVVLKDGSSLHPDTTPFILNSGEVDGRGNVFGLAGNKYGWMVEVDPANPDDYGTKHTWLGRFRHEAVAFLAQTGQPLAVYSGCDRRGGHIYKFVSEGKISDIKAKNNSKLLEKGMLYGAKFNPDKTGYWIPLNPDTEINPVLPSQIAASRGDGVVALPNPERTVNDNQLLLFKDDEEILAYKAKYKTLADLYEGNGTEKQGAILIDAHFAANAVGVTCTGRPEDTEVDENGTLYITFTSGSPSEAEGGADKEIFKGPNGEIPYEFGWIISLREDNNDAASLSFRWDVVAYGGEPTEKGEGFSNPDNLAFDKQGNLWMVSDISTGGLNREMKTRYPQGVPVSQRDLLGIFGNNSAWVFAKGQEHPYPFAIAPMDAELTGLYFTPDQETLFLAVQHPGEAGGIRRDLAFENRKFALKTTNGQEFEQIRQVPLGSNWPSGQVNQPPRPAVVAIRRIESK
>CP011304.1|AKE62858.1|504481_505348_-|Chemotaxis-regulator---transmits-chemoreceptor-signals-to-flagelllar-motor-components-CheY
MTRDLCRILLIEDEPTTVKLIQRLLLKAPQCSLAKGLTFTLTQAQDLEETAEKLAGEKFDLILLSLEISVPPGLNILVKTRELASDIPIVVQTTSNDEKLVVKAFQLGADGYIQLNNIDSSLLVYQIRVAIERQQYILNLKHQQQEEEFRELEQLIKGVQTSITAKMFGSEAIRQSIPDIFQELVQNYGELLDLALEEQAYKVEHNLSERLRSLADKLGFLKASPRDVVDIHTTTLRQKNQDVTLAKAQAYVSEGRLMVLELMGYLVSFYRKYYIGLSNIKLFNNTQS
>CP011304.1|AKE62857.1|504194_504485_-|Circadian-oscillation-regulator-KaiB
MSQYLLKLYIMGDSSKSQRAIANIFRICREELSDLYTVEIIDVLEQPQLAEQDKILVTPTLVKQLPPPLQRIIGDMSNTQKVLLGLDVIPKDSHLN
>CP011304.1|AKE62856.1|503510_504134_+|hypothetical-protein
MSSAITEAITTIALDETRFNLSLTEDGAFFPEWKSDLLALSSHEKKSLDELIQKYLYQRSAGQLLEETVTLLLVSPLLAIAGFYDPPLRVRAEESVSLTVDDGEEILSGRIDVLVWLNQFWVVIVESKKTALSVWTALPQTLAYLMANPRTEKPGFALVTNGDDILLVKLRANAHHYALSRVFAPFISREELYRVLQIFKHIGAAIK
>CP011304.1|AKE62855.1|502542_503505_+|CsaB-protein
MLPSAIKPIVLSNNPRETSQRYGVETCPSRDWWQIFQTLKKADVFIWGGGSLMQDVTSFASPIYYGGLMALAQLLGLKTIAWGQGIGPLNRPFTRWLTKKVLKQCSLVTVRDDASAHLVADWGISPIVAPDPVWALDAQSVKGLSDLPAPRIAVNLRPHPLLTPAKLDKLTRALIDLQISTGAFILLVPFQKSRDLPLCEAVARQLRENYQIISLEDPRQLKGLFRGVEMVIGMRFHSLIMAAAEDCRCFALSYDPKVSRLIAEVPMPGWELDQLPEAVNDISNTWINFYANGEGLTSDRKHFLIDRALIHREILSRLVS
>CP011304.1|AKE62854.1|502393_502522_-|hypothetical-protein
MPHLLRFLSHNIHKLLHAYISYQLSVISCQPEKGKSQKAKVW
>CP011304.1|AKE62853.1|501114_502194_+|hypothetical-protein
MTEQPRSTDDRISETEATELMRSLLHKEGNWVNWGQKCQKLQKAGYDSQLIFEQTGFQNAQQNLIIVAAQVFESLIKAGADEDLLSYYIGPRSDVLYELRILNQEQRLGAAKLAAEKRIEVAEAHDIAKAIQDFSRLSQIPSEFTRHPGDAIAYQCWKRGKQKRDLAERAKLIAKGLKFAHSDSARQAIESLLQDFTVTPSRSAPLLPVHRLQDEDELARIIPLVGRFPVTVTDIKHTESLSVEEPFRLVTVGDKQTIVPLPGWQAILKAIDPVAILWPSDQLPRSIATRSEEVLLVIDRVLAEWDVNNYYLVEKDNSVFLQWFDSSPDVTILGELVLILRAKNILDEKNITEPWQMDD
>CP011304.1|AKE62852.1|500100_500967_-|Carbon-dioxide-concentrating-mechanism-protein-CcmO
MSRLRVNGSIPPSSTTNPGQRTMKTKRHPKDSALGLVSTLSFPAIVGTADMMLKSAEVTLVGYEKIGGGHCTAIVRGNIADVRLAVEEGAKTAAQFGQLVSKSVIPRPMPNLEVIFPIGSRLAEIAQSQRGFSKLSNMSIGLLETRGFPAMVGAADAMLKSADVQLASYETIGDGLCTAIIRGSVANVAVAIDAGMREAEKIGELHAVMIIPRLLEDLEHTLPVASYWLETPEPLPMLLPNTVREKQRELVALPELEKTKIPIRRQEMQEKVLEEVIPVEVITDEDGY
>CP011304.1|AKE62851.1|499935_500091_+|hypothetical-protein
MTKIYHYSIRLIVGGLCKDFLLGNPHPPTNFFQQILIQPFAPVLLAAQEQS
>CP011304.1|AKE62850.1|497770_498781_-|EcoRI-methylase/methyltransferase
MARNATNELLQKAKKSKSDEFYTQLSDIESELQHYKSHFENQVVYCNCDDPRISNFFNYFTSNFNELGLKKIITSCYREQVKNLFNTEEDEKGFFFEYTGTEGEKNKPSSTDLVYFNGDGDFRSSESIELLKQSDIVVTNPPFSLFREYVAQLVKYDKKFLIIGNINAITYKEIFKLIKENKAWLGINLGRGISGFIVPEHYELYGTETRIDNSGNRVISPNNCLWLTNLDNFKRHEDIELTKRYFGNEVQYPKYDNYDGINVNKTQDIPIDYKGYMGVPITFLHKFNPDQFEIIKFRKGNDDKDLSVNGKCPYFRILIKNKRIQTEYIDLTDKER
>CP011304.1|AKE62860.1|508150_508474_+|Phosphomannomutase
MSNETVTYSLEAVLTRIEGKIDNLQRDVTQKFDKIDERLTKLEIGQAEIKGELKGDIKALDERLTTEIKGLTARIAYQEFTNRGILIALVVAILGGAAKLFGFFPNP
>CP011304.1|AKE62861.1|508511_509198_-|N-acetylmannosamine-6-phosphate-2-epimerase
MRIETLKSGLIVSCQAPVESSLHDPVIIAAMAHACVDRGACGVRIDSPAHLKATRQQLPDIPIIGLWKRNYRDCSVYITPKYQDALAIADAGADIIALDATPRKRPNDENLATIIDRIHRETGKLVMADIDSIESAIYAVAAGADVVGTTLYGYTEATKHLQPPSFSFLEELVNKLSVPVICEGGISTPTEAKKALEVGAYSVVVGTAITGIDLKTTAFLQGILSKYS
>CP011304.1|AKE62862.1|509314_509824_-|Inorganic-pyrophosphatase
MDLSRIPAQPKPGLINVLVEITAGSKNKYEFDKDLNAFALDRVLYSSVQYPCDYGFVPNTLADDGDPLDGMVIMDQPTFPGCVITARPIGMLEMIDGGDRDEKILCVPAKDPRYAEVKSLKDVSPHRLDEIAEFFKTYKNLEKKVTEILGWKDVDAVTALVEQCIAAYK
>CP011304.1|AKE62863.1|511053_512232_-|Permease
MVEVKVVPPKRNWIQTWWQSLNSLSRLLVIALAAPLVVLNVWALSAIFGYFESLFVILLIAAVLSFLLGYPVTWLERQGLKRGLAAIVVSLITILIFVAVGITLVPLVFTQAQQFVNRLPEWLDSGQRQLMQLDTKIDTMNLPIPISFDGLIAQFNSRLGAELQILAGRSVNLALNLTVFTVVRVLDVLLTIILTFYLLLHSPDIWRSIIQWLPKPVQQPFSLTLRLSFQNYFVGQVICATCMALGLVTAFLSIKVPFGLLFGLLIGTMALIPFGGTVGIVTVTALLALRDIGLALQVLAVAVVVQQIVENGIAPRILGSVTGLNPFWVLVSVLTGARVGGLLGVIVAVPMAVMIKEALEVIRQVTPEETKHGVIKPSLPLESESPSEVVSR
>CP011304.1|AKE62864.1|512403_514389_-|Exoribonuclease-II
MQGERRLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIVKGGPSNYREIGNFLREVQPYLDPSGLEVAWELLAGENQLVTPETMAEILFSDRGWQFCYAAHCLLSDDKVYFKNKGDGYEARSENQVEEIKHQLEVEKQRQREKSQFLQRIQQALASETVEWSESDRIRLESLEKFILQPEQKYPAAMEILSLLGRSQTPEAAFELLVDLKWWSSHENLFLRRSSYPVQFSKKVLDVARLNLLNPPADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLVRPDDELDLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHPSTIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVKDNDEIIVELQEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDEELILLPAGPVRSCALRRCMPRSEMTTIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQLKAHLRGDQLPFTRDRMQEILYSVASSAQEATSVERQTNRYWSLEFLRRQGDQVWQALVLRWLREEENLGLILLEELGLELPHRFERSVSLGDRFQVQVSRADPHRDEIRFRELSGFVSSQAS
>CP011304.1|AKE62865.1|514496_516536_-|Biosynthetic-arginine-decarboxylase
MAGKTQLKKQEKQLSPVDLTPSDGNNLEKVAPVKHWSIEDSENLYRIQGWGEPYFSINAAGNITVSPQGERGGSLDLYELVSAIKRRNIGLPLLIRFSDILEDRIERLNACFNRAIARYNYANVYRGVYPIKCNQHRHIVESLVRFGKPYQFGLEAGSKPELMIALATLEPALNGKNDKTQPLLICNGYKDKEYLETALLTTRLGHRPLIVIEQLEELYLTLRVSRQLGIAPHLGVRAKLGTKGVGRWGCSTGDRAKFGLTVPEILTVVMELEQAGMLDCLQLLHYHIGSQISAIGVIKDAIREASQIYVELAKLGANMTYLDVGGGLGVDYDGSKTNFYASKNYNMQNYANDIVAEVKEACEDAQIAPPILISESGRAIASHQSVLIFDILGSSEVPQNPPDPCNGKEHLILRNLWETYTGIDERNYQEAYHDAGQFKEEAISLFNFGYLSLKERARAEQLYWACCHKILQVARQQDYVPDDLEDLEQIMASIYYANLSVFQSVPDSWAIDQLFPIMPIHRLDREPTQRGIIADLTCDSDGKIAQFIDLRGDIKSVLELHPLEYKNGKHSPEPYYLGMFLVGAYQEIMGNLHNLFGDTNVVHIQMSPKGYDIEYLVKGDTITEVLSYVQYSAEDLLERIRLRCEQALQENRMTVEESQLLLQDYERSLRRYTYLVGGD
>CP011304.1|AKE62866.1|516676_517210_+|hypothetical-protein
MQLLDSKGRLFGKFSLLDIGAALVILLTIIGIFVVPGTSGKSTIAQVTKEPIEVDVIVRGLSVLNPNALINQFNTEKKTNIVIRNQPAGQVDIKNVKPLSRNVLVPQPDGSVKVLPDPRTENYSQDMIMTLSGQAEVTDTGAVVGGQKVKIGTLIELEGDNYNFNTSVIDVRLSKRS
>CP011304.1|AKE62867.1|517376_517943_+|Recombination-protein-RecR
MIEQLQKLPGVGPKSAQRLALYILKRPEQDAIELAQAIVAAKKQVGLCQVCFHLSAEPICEICRNPNRETGTICVVADSRDVIALEKTREYSGKYHVLGGVISPMDGIGPDQLNIQSLVTRVSQKKIQEVILAISPSVEGETTTLYIGGLLKPFTKVTRIAFGLPMGGDLEYADEVTLARALEGRREL
>CP011304.1|AKE62868.1|518186_519554_-|carboxyl-terminal-protease
MALSKRQSYFGFVFMNQSRPSFVSVQKLLSGGAIATLAVSSLMVLTPAAKGEKPLEDNPKAVIDQVWQIVNNEFVDRSFHQIDWQKKRQELLSRNYTNPQQAYTAIREALKELGDTYTRFLTPSEFSVLTSQTSGELSGIGIRLALDKRTSDLIVVDTVKKSPAKEAGVKSGDRLIRINGKPTALMTLEQAMEALQGEVGTSVSLQLARPDQGVFEVTLTRVDIEIPSVSYTLKQEGGVKVGYIKLDEFSSHAAEQMKEAIEELSQQQISGYVLDLRGNPGGLLFASVDIARMWMKQGKIVSTIDRRGGDRQFSANNTAITDLPLVVLVNKGSASASEILAGALKENGRATLVGTSTYGKSTVQSVHTLSDGSGLAVTIARYYPPNGENIYKKGIKPDVQIELTREQQLRFRDDPSLLGTKDDPQYQQAISLLQSHNVKRPSTGNLNNPLSSRAE
>CP011304.1|AKE62869.1|519654_520074_-|mutator-protein
MIFVALAILEQDGRFLMQLRDDIPTILYPGVWGLFGGHLEAGESPEIGLKRELKEEINYEAPSLRYFRSYNDDNLSRYLYHVPLTLGLEKLVQTEGQDLALLPPAAIRQGEYYSEKINQTRSLGKIHRQILLDFLEVEL

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Crispr_ID: CP011304_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_4

671329-671419

Orphan

Consensus_repeat	Method
GCTAAAAAGTGCTTCAACGCAAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP011304_4

>merge|CP011304|4|671329-671419|CRISPRCasFinder
GCTAAAAAGTGCTTCAACGCAAATCCATTTTAGGGATGTCAAATCGGCGAAACCCTTATACAGCGAGCAAAAAAGTGCTTCAACGCAAATC

>CP011304|4|4|671329-671419|CRISPRCasFinder
GCTAAAAAGTGCTTCAACGCAAATC	CATTTTAGGGATGTCAAATCGGCGAAACCCTTATACAGCGA
GCAAAAAAGTGCTTCAACGCAAATC

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE63015.1\|667462_668092_-\|SAM-dependent-methyltransferase-sll0829-(UbiE--like-protein)	unknown	unknown	gnl\|CDD\|379312
CP011304.1\|AKE63016.1\|668205_669369_+\|Ferrochelatase,-protoheme-ferro-lyase	unknown	unknown	gnl\|CDD\|178068
CP011304.1\|AKE63028.1\|681691_683194_-\|Iron-sulfur-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|273908
CP011304.1\|AKE63022.1\|672871_674008_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372192
CP011304.1\|AKE63019.1\|671498_672491_-\|Peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
CP011304.1\|AKE63027.1\|680373_681636_-\|Cysteine-desulfurase	unknown	unknown	gnl\|CDD\|215460
CP011304.1\|AKE63020.1\|672474_672591_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE63026.1\|678833_680339_-\|Ribosomal-large-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|223638
CP011304.1\|AKE63010.1\|663652_664318_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368753
CP011304.1\|AKE63024.1\|675682_678310_+\|FenI	unknown	unknown	gnl\|CDD\|224563
CP011304.1\|AKE63014.1\|666791_667397_-\|HAD-superfamily-(subfamily-IIIA)-phosphatase,-TIGR01668	unknown	unknown	gnl\|CDD\|225090
CP011304.1\|AKE63009.1\|663290_663647_+\|transcriptional-regulator,-XRE-family	unknown	unknown	gnl\|CDD\|238045
CP011304.1\|AKE63013.1\|666415_666586_-\|Mobile-element-protein	unknown	unknown	unknown
CP011304.1\|AKE63025.1\|678478_678661_-\|SSU-ribosomal-protein-S21p	unknown	unknown	gnl\|CDD\|234707
CP011304.1\|AKE63021.1\|672604_672778_+\|DNA-gyrase-subunit-A	unknown	unknown	unknown
CP011304.1\|AKE63012.1\|666230_666344_-\|Mobile-element-protein	unknown	unknown	unknown
CP011304.1\|AKE63011.1\|664358_665354_-\|RuBisCO-operon-transcriptional-regulator	unknown	unknown	gnl\|CDD\|177082
CP011304.1\|AKE63023.1\|674168_675518_+\|UDP-N-acetylmuramoylalanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|235059
CP011304.1\|AKE63017.1\|669459_669711_-\|putative-Cytochrome-c-oxidase-subunit-Va	unknown	unknown	unknown
CP011304.1\|AKE63018.1\|669861_671280_+\|Transcriptional-regulator,-ArsR-family	unknown	unknown	gnl\|CDD\|225420

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE63015.1\|667462_668092_-\|SAM-dependent-methyltransferase-sll0829-(UbiE--like-protein)	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	8.76175e-24
CP011304.1\|AKE63016.1\|668205_669369_+\|Ferrochelatase,-protoheme-ferro-lyase	gnl\|CDD\|178068	PLN02449, PLN02449, ferrochelatase.	0
CP011304.1\|AKE63028.1\|681691_683194_-\|Iron-sulfur-cluster-assembly-protein-SufD	gnl\|CDD\|273908	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.40162e-101
CP011304.1\|AKE63022.1\|672871_674008_-\|hypothetical-protein	gnl\|CDD\|372192	pfam12565, DUF3747, Protein of unknown function (DUF3747). This family of proteins is found in bacteria. Proteins in this family are typically between 215 and 413 amino acids in length. There is a conserved DSNGYS sequence motif.	6.47394e-93
CP011304.1\|AKE63019.1\|671498_672491_-\|Peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
CP011304.1\|AKE63027.1\|680373_681636_-\|Cysteine-desulfurase	gnl\|CDD\|215460	PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase.	0
CP011304.1\|AKE63023.1\|674168_675518_+\|UDP-N-acetylmuramoylalanine--D-glutamate-ligase	gnl\|CDD\|235059	PRK02705, murD, UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase.	0
CP011304.1\|AKE63026.1\|678833_680339_-\|Ribosomal-large-subunit-pseudouridine-synthase-A	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.63942e-65
CP011304.1\|AKE63010.1\|663652_664318_+\|hypothetical-protein	gnl\|CDD\|368753	pfam06114, Peptidase_M78, IrrE N-terminal-like domain. This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.	1.05196e-07
CP011304.1\|AKE63024.1\|675682_678310_+\|FenI	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	2.74349e-60
CP011304.1\|AKE63014.1\|666791_667397_-\|HAD-superfamily-(subfamily-IIIA)-phosphatase,-TIGR01668	gnl\|CDD\|225090	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only].	6.50792e-58
CP011304.1\|AKE63009.1\|663290_663647_+\|transcriptional-regulator,-XRE-family	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	7.87473e-09
CP011304.1\|AKE63025.1\|678478_678661_-\|SSU-ribosomal-protein-S21p	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	2.78795e-12
CP011304.1\|AKE63011.1\|664358_665354_-\|RuBisCO-operon-transcriptional-regulator	gnl\|CDD\|177082	CHL00180, rbcR, LysR transcriptional regulator; Provisional.	0
CP011304.1\|AKE63018.1\|669861_671280_+\|Transcriptional-regulator,-ArsR-family	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	1.37853e-69

>CP011304.1|AKE63018.1|669861_671280_+|Transcriptional-regulator,-ArsR-family
MINLETLEGWLNAPVENERLEFKQAKNQFDTIKLLKYCVALANEGGGHFILGVTDKRPRKIVGSQAFPTPEEINSIKSLIVQKLRLRVEITELAHPDGRVLVFEVPTRPTGQPIAFEGAYLMRAGEDLVFMTPDRLKLIFAEDQQDWFCQSARSHASPDEVIDLLDTQTYFKLLKLPYPSHRDAVLERLQSDQLLDKTSKGWTIPNLSAILLARQLESFSPTLARKAPRVIIYEGTGKIKTRLEQTGTKGYAVGFDGLVNFVHDLAPQNRVIEEVLREEVKMFPPQALRELIANALIHQDFLATGASVMIEMYDDRVEISNPGIPFIKVERFIDEYRSRNEQLADIMRRFGICEEKGSGIDKVISAAEKFQLPAPDFRVGEIRTTSILFAHQDFGKMSQSDRIRACYQHCCLLYVDNQRMSNQTLRNRFCLNESKNNTVSQVIGATKEAGLIKLDESESKSTRYARYLPFWA
>CP011304.1|AKE63017.1|669459_669711_-|putative-Cytochrome-c-oxidase-subunit-Va
MVIIEITNVEEILSAKIGSFAAKIVQALADDEGKVEEVLIKELQANFQERGIKANLFSVTGLDMLGNGRLEVNVNVRSANMMS
>CP011304.1|AKE63016.1|668205_669369_+|Ferrochelatase,-protoheme-ferro-lyase
MGRVGVLLLNLGGPERLEDVRPFLFNLFSDPEIIRLPIKGLQKPLAWLISTLRASKSQENYRQIGGGSPLLKITEAQATALQQRLAEMGREVSVYIGMRYWNPFTEEAIERIKRDHIKKLVILPLYPQFSISTSGSSFRVLEEMWQQDPYLRLTEYTLIPSWYDHPTYLSAMADLIARELEQCPNPDQVHIFFSAHGVPQSYVEEAGDPYQREIEECTRAIMRTLNRPNQYTLAYQSRVGPVEWLKPYTEDALKGLGEQGIKNLLVVPISFVSEHIETLQEIDIEYREVAEEAGIEHFQRVPALNTHPMFIESLSQLVVKSLEENPTTFEQITHPKANMKMYPQERWEWGMTTAAEVWNGRLAMIGFLAIIIELITGQGPLHFVGLL
>CP011304.1|AKE63015.1|667462_668092_-|SAM-dependent-methyltransferase-sll0829-(UbiE--like-protein)
MILATILRPLSYQYQWLYDGISRLAALAVGGESRFRQLALEGLKIAKNDPILDLCCGAGQTTRYLVPLSDRCTGLDVSPRALERASLAVPQAHYVEGLAEKMPFNAGEFALVHTSAALHEMEPEQLQEILKEVYRVLRPGGIFALVDFHRPTNPLFWPSLALFLQLFETDTAWQFIDRDLIRSLQAIGFRDCQQKLYAGGSLQVIQAAK
>CP011304.1|AKE63014.1|666791_667397_-|HAD-superfamily-(subfamily-IIIA)-phosphatase,-TIGR01668
MSKLSSINSLPVIFEKLMTRAKILQPDLILGDTILGLTLEILSQHQIKGLILDVDDTLVPLQETTVSDDLQRWVDSLRLYLPIWLVSNNLSENRIGAIADNLQLPYLLGAVKPSRRKLRQAMAAMSLPPQQIAMVGDRLFTDVLAGNRLGMFTILVKPMVNPLTGGAAYPIHDFEVWISQILGVSLHPQHYFIKPDQSSQK
>CP011304.1|AKE63013.1|666415_666586_-|Mobile-element-protein
MICVFRIKGSGHDFSLFKKSRVRFHPLATSIEDSSYQGISQYHSNIYTPKNRNSQA
>CP011304.1|AKE63012.1|666230_666344_-|Mobile-element-protein
MKILSCKYRNSRLRYGLIVNLLAAIYNYELGISTEAS
>CP011304.1|AKE63011.1|664358_665354_-|RuBisCO-operon-transcriptional-regulator
MTDIPFTLDQLRILKAIAAEGSFKRAADTLYVSQPAVSLQVQNLEKQLNVPLFDRGGRKAQLTEAGHLLLSYGEKIITLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPRMIGLFRQKYPEVSVQLQVHSTRRTSWSVANGQVDLAIIGGEVPAELQETLRIIPYAEDELALVLPIFHPLSKVEMIQKEDLYRLKFITLDSQSTIRKVIDKVLTRCEIDTKRLKVEMELNSIEAIKNAVQSGLGAAFVSVTAIEKELQMGVIHATRIKDVEIRRTLSVIINPNRYRSKAAEAFTLEILPQFSTYPEYLADDHNFEPIPNSQTAEIISK
>CP011304.1|AKE63010.1|663652_664318_+|hypothetical-protein
MDIIKPYSFIPKTEIEAQADNILKKVKAHRRRPLKNCDIAEAAADHFDLAIEWTDIKPDKEGEIAAMIIPIEKKIILNEDVKFLKDSQNSSLAKEGFKNSSLAHEIGHFVLHINQTAVSNFFERINQGDSLGTIQPFLCRTVDSSQRIEWQAQYFASCLLMPMSELEKAIKGRDLTKWGLLYAIADELGVTITNLRSRLESLHWIKVDKKVIYRGSNFPKR
>CP011304.1|AKE63009.1|663290_663647_+|transcriptional-regulator,-XRE-family
MSETFGQVIRKARREEEYSQRELAKLIGVDYTYLSKLENDHAGYPPSQQVIESLATHLKLNAQTLGELAGRISSDDQKVFKELVQKYQQMPILLRRMKDNPNFAKKVISEATKLEPEE
>CP011304.1|AKE63019.1|671498_672491_-|Peptide-chain-release-factor-2
MAAVPTFWDNPDTAQKTLQELNECKSSLETYQGWCEQLEDTKAIIELLELESDRTLLEEATDNLTHLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKVTLAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMPILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQNKEKALALLKAKLLIIAREQQAQAIAEIRGDMVEAAWGNQIRNYVFHPYQLVKDLRSNVETTDVTRVMNGDLDSFIEAYLRLGGAV
>CP011304.1|AKE63020.1|672474_672591_+|hypothetical-protein
MGTAATCSKSLILALKVGKSKIVLGFTQAQSYYLDTFF
>CP011304.1|AKE63021.1|672604_672778_+|DNA-gyrase-subunit-A
MFSVISYQLSVISYSRSQESGESVPMKKFSPPQRKEVSFPTPHTLHPLSSQEAGVES
>CP011304.1|AKE63022.1|672871_674008_-|hypothetical-protein
MNLKSSLKFTLLFSLLGGCLLTTPSQATLFEQREVNQEDFIAIARPYGNGKYDLLILQQIQGKRQCWAVNGTEPTIVQPLLLDFDFTGSCERATDSNGYSLRIQGKDYGLEYLLRIVQRNGELVLVGTPRNPRQSEVIIGRTKGLGTGLIQIYLIDGWRFTKRSLAGQNLSHIYLTADSPNFNPPPELLAGNSYSLPRESVKAETPVNPPGDPEVREYTFTAAETAVQSNPEPVVTNPVPEQNSTPAPPVTSNLPPLTPPLRLGSGQANAQNNNAIVPPPPPRNLGNQRSLSDVITFNRPAANPSSGNTSNSGRKGFKVVIEAKNESDRSKVRSLYPDAFPTSHQGRRVWQIGAFSSRDKAENALQSLAPLRGSIVPF
>CP011304.1|AKE63023.1|674168_675518_+|UDP-N-acetylmuramoylalanine--D-glutamate-ligase
MAKAAIIGLGRSGIAAARCLKRDGWQVTLSDRSDSPSLQATKTNLESEGIIVNLGQNLSLGASDLPDLIVVSPGVPWDAPILITAREKGIDTIGELELAWRYLQSSPWLGVTGTNGKTTTTALCAAIFQKAGLNAPSCGNIGYAACELALKADKYDWIIAEISSYQIESSRDLSPKIGIWTTFTPDHLSRHQTLENYYQIKASLLQRSDRQILNGDDPYLRQIGVSQWQQAYWTSVQGKEALLGDPSRGVYLQDNWIVAFGELIAPVNLLKMVGSHNQQNLLMAVAAARLAGIEKKAITEAIATFPGVAHRLEYVCTYKGLDFINDSKATNYDAAAVGLKSVPSPAILIAGGEAKAGDDRAWIAEIKAKVATVLLIGDAAADFARRLQSAGYQDYECVETMDRAVQRAAELGLAKAAKVVLLSPACASFDQYQSFEHRGDHFRQLSLQL
>CP011304.1|AKE63024.1|675682_678310_+|FenI
MLGSSFRLDHLFKKRLITCLFSCVAVLLPIPVLATPVAVLKSQENANQWTAITDRLQNVGVNYCILQSNQWQSDADLNKIKVLIIPNVETISGLQASVLSRWLNRGGKIIVTGPAGNLSEPAVRDQLRSLFGAYWAYPHSQAYTLRPTNLGEVKNQKPLASSLLGGVVIPTGVNSQTVAVWGARNNPPAVVLNNNSIFLGWRWGSDAVANLALDSAWLETALQRYGINRSSSLNTIAPYCQGNSTIVNNINNTPTATAPRPPLPQISENPPSETARLSPNTEAIPPRASLTPQQISQMTAELQGLIGRYGATLLALEASNSNISNTDKSLAQAFHNRAKNSPTTDTARRFRLALENAQGALNNFQNLIAQGDYTQAREFWLQARRNLWDHYPTNRQFAQPEIRAMWLDRGTIVEAKNEEDLAKVFDRMAAAGINVVFFETVNASYTIYPSQVAPEQNPLTRGWDPLKVAVKLAHERNMEIHAWVWVFAAANQAHNKVLEQPLDYLGPVLSRNPDWGATNKSGGSFDYSQGTKKAFFDPANPDVQNYLLSLYEEIVKNYDVDGLQLDYIRYPFQNQNSNQTYGYGKSSRWLFKQMTGVDPITLNHRGALWEQWTSFKIRHVDTFVSQVSTRLKQIRPHLKISAAVFPIEQKERLYRIQQNWEEWGQNQWIDLIFLMTYALDTGTLEEKTQSLFDRKIAGNALIVPGIRLLKVPDQVTIDQLQFIRNLPTSGFALFATENLNPNLQTILNRIQGSIITKKAEPLPHRQPFKTAAARFNSLRQEWSFLIVNNLWAMEERTLKAWGQEVDEMANLLEQLATNPSPRNLTLTQNALKRFSYQFKSVMSRQKDLSAYQIQVWENRLATLQSLLSYGQRVEF
>CP011304.1|AKE63025.1|678478_678661_-|SSU-ribosomal-protein-S21p
MTQVVVGQNEAIESALRRFKRQVAKAGIYADIKKHQFFETPQEKRKRKAVARRRQRTRRR
>CP011304.1|AKE63026.1|678833_680339_-|Ribosomal-large-subunit-pseudouridine-synthase-A
MKEVTYYYQGICPETGELLRLPRTLLAEKIAQDLMTTITNPQGKMYGILLGENAAGEIEILKAFSGQGEAAGWVPSLVGREKIMLEEKRVLQLLETIKQEIITLQSIPEHNLYRLNQANFECKIQALQQQHQNHKQERNRLRNLGNLKPEELEKLNNISRQEKRARKQLKQEQKQVLDPLIDKINVANQRIIELKQQRRKLSKQLQELLYQSYCLNNFSGQSLSLAKLMGSNLLPTGTGECCAPKLLNYAAMKGLKPVAMAEFWWGESNRDRKQGEFYGACQERCQPLMGFLLSGLRSSLEIIYEDEGIIAINKPAGLLSVAGRYQDSQDAVVNRFRRQGKNVIPVHRLDRETSGILLLAKSLDIYRCLSQQFQRREVEKIYEAILSEVVERESGIIDLPLWGNPQNRPYQTVDWQRGKASQTYFKVIGKEGNYSRLEFIPYTGRTHQIRVHSQAGLGIGILGDLLYNGKQSDRLYLHAKQLSFRHPQTETKLDLIIPTPF
>CP011304.1|AKE63027.1|680373_681636_-|Cysteine-desulfurase
MTIIQEKTLAQKVRADFPILHQTVHDKPLIYLDSAATSQKPIQVLETLRNYYEKDNANVHRGAHTLSVRATEAYEGARDKVARFINAASRQEIVYTRNATEAINLVAYSWALNTLKAGDEIILSVMEHHSNLIPWQIVCQKTGAVIKYVQLTSEESFDLEQYKSLLSDKTKLVAVLHVSNTLGCINPVAEIVSLAHQVGAKVLIDACQSVPHLAIDVQSIDCDWLVASGHKMCAPTGIGFLYGKEAILEAMPPFFGGGEMIAEVYLDHFTCAELPHKFEAGTPAIGEAIALGAAVEYLMGLGMDNIHAYEEELTAYLFKKLGEIEGLRIYGPPPSLTGQGRASLAAFNVEGIHASDLATLLDHEGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTREEIDSFIVALQETIDFFANCFS
>CP011304.1|AKE63028.1|681691_683194_-|Iron-sulfur-cluster-assembly-protein-SufD
MKKFSPPEMKEVSFPTPHTPHPTPHYPTTPLPHYPTTPLPHTPHPTPYTPTPKPHPLLPMTAIITKPEQSGELLLKLSRETVPTIDNGKILELRESGASKAQELAIPGRKDEEWQFTDLSQLWAIDFRAPQTVTIDKNALAVFLLPEAKNSHLVFVNGIYQPELSDISALPPGVSVGNLANAQKDVLVNYLGKEKTPEFFTALNQAGLSDGAVIHVTANTVVTTPIHLLFITVVEEIPRFYQPHSLIVAETGASVNIIENYGALAEHCSDLPVNYSYFTNAVTEIYLEANAEVIHTRVQRESGDGFHIGRTIIEQAHDSRYTLNEINLGAKLCRHNLDVLQKGEQTETNLHGLAMITGQQTADTHSAIYLNHPHGITKQLHKCIVDGSAHAIFNGKVFVPKPAQLTNASQLNRNLLISNKARVNTKPELQITADNVKCSHGATVSQLEADDLFYLQSRGLSADTARSLLIDAFSAEILAKIPLESLRQRLGQCVACRSVE

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Crispr_ID: CP011304_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_6

1045396-1045495

TypeV-U4

Consensus_repeat	Method
TTGTCAAAAGACAAGCTGTCAAACTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP011304_6

>merge|CP011304|6|1045396-1045495|CRISPRCasFinder
TTGTCAAAAGACAAGCTGTCAAACTTGGTGTAGAATGAATCAATGGGACAGTTAAAAGCAAACTTTTACTTTTTTGTCAAAAGACAGGCTGTCAAACTTG

>CP011304|6|6|1045396-1045495|CRISPRCasFinder
TTGTCAAAAGACAAGCTGTCAAACTTG	GTGTAGAATGAATCAATGGGACAGTTAAAAGCAAACTTTTACTTTT
TTGTCAAAAGACAGGCTGTCAAACTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE63381.1\|1045526_1045904_+\|Plastocyanin	unknown	unknown	gnl\|CDD\|235060
CP011304.1\|AKE63378.1\|1042451_1042745_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE63372.1\|1038275_1038464_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE63387.1\|1053802_1053940_+\|tetratricopeptide-protein	unknown	unknown	gnl\|CDD\|380042
CP011304.1\|AKE63380.1\|1045013_1045280_-\|Cytochrome-C553-(soluble-cytochrome-f)	unknown	unknown	gnl\|CDD\|184253
CP011304.1\|AKE63389.1\|1054284_1054527_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379816
CP011304.1\|AKE63390.1\|1054684_1055020_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341357
CP011304.1\|AKE63382.1\|1046346_1048074_+\|Succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|180319
CP011304.1\|AKE63383.1\|1048267_1048996_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367137
CP011304.1\|AKE63386.1\|1053479_1053749_+\|RelE/StbE-replicon-stabilization-toxin	unknown	unknown	gnl\|CDD\|224937
CP011304.1\|AKE63385.1\|1053279_1053483_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375932
CP011304.1\|AKE63374.1\|1039689_1040772_+\|photosystem-II-protein-D1-(PsbA)	unknown	unknown	gnl\|CDD\|130221
CP011304.1\|AKE63379.1\|1043217_1044897_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371750
CP011304.1\|AKE63375.1\|1041040_1041553_+\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|379256
CP011304.1\|AKE63377.1\|1042198_1042462_-\|RelE/StbE-replicon-stabilization-toxin	unknown	unknown	gnl\|CDD\|224937
CP011304.1\|AKE63373.1\|1038621_1039512_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE63384.1\|1049162_1052915_+\|HEAT-repeat-protein	unknown	unknown	gnl\|CDD\|227922
CP011304.1\|AKE63388.1\|1053941_1054274_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE63371.1\|1037881_1038001_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE63376.1\|1041684_1042110_+\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|315923

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE63381.1\|1045526_1045904_+\|Plastocyanin	gnl\|CDD\|235060	PRK02710, PRK02710, plastocyanin; Provisional.	1.1168e-69
CP011304.1\|AKE63380.1\|1045013_1045280_-\|Cytochrome-C553-(soluble-cytochrome-f)	gnl\|CDD\|184253	PRK13697, PRK13697, cytochrome c6; Provisional.	3.47907e-41
CP011304.1\|AKE63390.1\|1054684_1055020_+\|hypothetical-protein	gnl\|CDD\|341357	cd16382, XisI-like, XisI is FdxN element excision controlling factor protein. This family contains XisI proteins, also known as FdxN element excision controlling factors, and similar proteins. FdxN element is excised from the chromosome during heterocyst differentiation in cyanobacteria. This is accomplished by the large serine recombinase XisF (fdxN element site-specific recombinase). The xisH as well as the xisF and xisI genes are required. XisI may function as recombination directionality factor (RDF), and needs XisH which may function as an endonuclease.	7.8288e-54
CP011304.1\|AKE63382.1\|1046346_1048074_+\|Succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|180319	PRK05945, sdhA, succinate dehydrogenase/fumarate reductase flavoprotein subunit.	0
CP011304.1\|AKE63376.1\|1041684_1042110_+\|Mobile-element-protein	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.18362e-10
CP011304.1\|AKE63383.1\|1048267_1048996_-\|hypothetical-protein	gnl\|CDD\|367137	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. This family consists of taurine catabolism dioxygenases of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent taurine dioxygenase. This enzyme catalyzes the oxygenolytic release of sulfite from taurine. TfdA from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase. TfdA from Alcaligenes eutrophus JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.	6.78602e-09
CP011304.1\|AKE63386.1\|1053479_1053749_+\|RelE/StbE-replicon-stabilization-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	2.68262e-08
CP011304.1\|AKE63385.1\|1053279_1053483_+\|hypothetical-protein	gnl\|CDD\|375932	pfam18506, RelB_N, RelB Antitoxin alpha helical domain. This is an alpha helix domain found in the N-terminal region of antitoxin RelB. RelE-RelB (RelBE) is a toxin-antitoxin (TA) protein complex. It is suggested that the toxic action of RelE is counteracted by antitoxin RelB, which wraps around RelE, blocks its active site and prevents sterically the binding to the ribosomal A-site.The long N-terminal alpha-helix of the tightly bound antitoxin RelB covers the presumed active site of the toxin RelE that is formed by a central beta-sheet.	1.82243e-11
CP011304.1\|AKE63374.1\|1039689_1040772_+\|photosystem-II-protein-D1-(PsbA)	gnl\|CDD\|130221	TIGR01151, Photosystem_QB_protein, photosystem II, DI subunit (also called Q(B)). This model describes the Photosystem II, DI subunit (also called Q(B)) in bacterial and its equivalents in chloroplast of algae and higher plants. Photosystem II is many ways functionally equivalent to bacterial reaction center. At the core of Photosystem II are several light harvesting cofactors including plastoquinones, pheophytins, phyloquinones etc. These cofactors are intimately associated with the polypeptides, which principally including subunits DI, DII, Cyt.b, Cyt.f and iron-sulphur protein. Together they participate in the electron transfer reactions that lead to the net production of the reducting equivalents in the form of NADPH, which are used for reduction of CO2 to carbohydrates(C6H1206). Phosystem II operates during oxygenic photosynthesis and principal electron donor is H2O. Although no structural data is presently available, a huge body of literature exits that describes function using a variety of biochemical and biophysical techniques. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis].	0
CP011304.1\|AKE63375.1\|1041040_1041553_+\|Mobile-element-protein	gnl\|CDD\|379256	pfam13551, HTH_29, Winged helix-turn helix. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	1.23677e-05
CP011304.1\|AKE63377.1\|1042198_1042462_-\|RelE/StbE-replicon-stabilization-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	1.46248e-14
CP011304.1\|AKE63389.1\|1054284_1054527_+\|hypothetical-protein	gnl\|CDD\|379816	pfam16277, DUF4926, Domain of unknown function (DUF4926). This family consists of uncharacterized proteins around 70 residues in length and is mainly found in various Caulobacter, Microcystis and Cyanothece species. The function of this family is unknown.	3.76533e-15
CP011304.1\|AKE63387.1\|1053802_1053940_+\|tetratricopeptide-protein	gnl\|CDD\|380042	pfam17874, TPR_MalT, MalT-like TPR region. This entry contains a series of TPR repeats.	0.00158077
CP011304.1\|AKE63379.1\|1043217_1044897_-\|hypothetical-protein	gnl\|CDD\|371750	pfam11832, DUF3352, Protein of unknown function (DUF3352). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 538 to 575 amino acids in length.	1.41702e-176
CP011304.1\|AKE63384.1\|1049162_1052915_+\|HEAT-repeat-protein	gnl\|CDD\|227922	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms].	4.76704e-39

>CP011304.1|AKE63380.1|1045013_1045280_-|Cytochrome-C553-(soluble-cytochrome-f)
MARPALADGASIFSANCASCHMGGKNVVNAAKTLKKEDLVKYGKDSVEAIVTQVTKGMGAMPAFGGRLSAEDIEAVANYVLAQAEKGW
>CP011304.1|AKE63379.1|1043217_1044897_-|hypothetical-protein
MKLRSFFYILGATVIILLVVATASFAWILADSPLSLLKGGVLREPMAAIFVPKQAPVMVSLLVNPERLESFGQLIATPANRRRSHQQIKDLEKSLLGKTGLNYQKEIKPWLGEEITLAVTSLDFDRDTDNGIQPGYLLAIQSKDGERAKEFLQASYSKQAVSGKFDLVFELYKGVNLIYQRPLTAGDNNRFLASAVVGDTVLFANNIKVLREALNNVQVPDLNLKNSPDYREALKNITEPRIAIVYGNLPPLSAWIANQPVPESPEAKQRLATAFTLKSGGIVAQTALIGVLGQDDQAPILSSPVGALSFIGENSLLVAASRDLNRFWTQVEEGLEADSPLQELITQVLNRFQSPLGLNLPEDVFSWVRGEYSLALVPSSKGMEPDSVFLGERVMGVEVDSAIEHLDELARSRGYNVVNLPLLDRTVTAWTKLTTAVPGGKAQLETLVTGVHTRVDNYEIIASSVEAMGLALSAQKNPILSSGKFRQAITALPAENDGYFYVDWRQLQPVIEAKFPIVRVLELSIKPLFNNLRSLTISSQGSENSVRRGTIFFNLGVKS
>CP011304.1|AKE63378.1|1042451_1042745_-|hypothetical-protein
MNITDVQVNLSTSEDFLDSETLAQIDLMQQKIQQYLQTLSLENLKTILEFAAYLSDKESEQATQEIREIPNIIEKLKEAEMDLQSGHLIDWKNSDDL
>CP011304.1|AKE63377.1|1042198_1042462_-|RelE/StbE-replicon-stabilization-toxin
MIYKVCLTAKANKVYSEADSVLRKKIAKCLKILQETPKNHPQIKALKGEFAGKYRFRVGDYRVIYIVDDSQSQVIVLLIEHRSQAYR
>CP011304.1|AKE63376.1|1041684_1042110_+|Mobile-element-protein
MHPRYEWLYVYGFVEPKTGKTLWYLIPRVNHQWLSLVYQSLAKDVVLSAEKIVLLVQDNAGWHRSQKLEVPDGIMLDFLPAYSPELQPAERLWSLVDEPLVNQYFETIEEIEEILITRCQYLETMTNEIKNLTNYHWLTYD
>CP011304.1|AKE63375.1|1041040_1041553_+|Mobile-element-protein
MPKKAYLAEHLSSEELKDRYRASQDSVETRRWHLLWKISLGWTIKNAAVAVGLDYQYSFKILKRYNELGEEGVKNLKKKSHEHRRGKEPLLKEEQWQKLKEELKKRPADGGIWTGPKVARWIEKETGREKVWNQRGWDYLKKFRYSCQEPRPKHKNSNQLNQKNLSRISQ
>CP011304.1|AKE63374.1|1039689_1040772_+|photosystem-II-protein-D1-(PsbA)
MTTTLQQRESASLWEQFCQWITSTNNRLYVGWFGVIMIPTLLTATTCFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLLGVFCYLGRQWELSFRLGMRPWICVAYSAPVSAATAVFLIYPIGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTEIESQNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLGAWPVIGIWFTAMGVSTMAFNLNGFNFNQSILDSQGRVIGTWADVLNRAGIGMEVMHERNAHNFPLDLASGEQAPVALTAPAING
>CP011304.1|AKE63373.1|1038621_1039512_-|hypothetical-protein
MTRQPHDQFAKQYLEELLSPLGKVEVSKEVADETRQVDIFFSPHPNMRGNAQFLGLLGQMVTTSTLLEPFRNAPNRTEIRNCILKLFSIFAELQRKGKREKTELNEDDLPRLWILATSISFQILESFDAKLELENWTEGIYFLSPSHRTAIIAINQLPITPDTLLLRLLGRGKTQSQAVRELLELPSGDSFRQNVMELLISWRVSVEINNLLESEDREVFMALSQSYLEWKEATKREGLQQGQRQIIENLMQVRFGELDESLIKVIDELLKLSPMESSRLLLESSREDLIRRFLSE
>CP011304.1|AKE63372.1|1038275_1038464_-|hypothetical-protein
MPPDRTIPSNEEPIVARETDKATRFHFNKVAIASLLSITAKTFSGDNSSNIWTTEISKEQSP
>CP011304.1|AKE63371.1|1037881_1038001_-|hypothetical-protein
MQTILTPKLAKLNFSRFSIAILAHPSTALFSHEDFYQEK
>CP011304.1|AKE63381.1|1045526_1045904_+|Plastocyanin
MKKLGLLVATVVLVVSSFFFNTASAAAETFTVKMGGDAGTLQFDPPTLTIKAGDTVKWVNNKLSPHNIVFDSTKVPEAQASKLSHKGLAFSAGESFESTFSEPGTYTYYCEPHRGAGMVGTITVQ
>CP011304.1|AKE63382.1|1046346_1048074_+|Succinate-dehydrogenase-flavoprotein-subunit
MKEHDVVIVGGGLAGCRAALEIKRLNPTIDVAVVAKTHPIRSHSVAAQGGIAAALQNVDPKDNPKAHAYDTVKGSDFLADQDAVDILTQEAPEVIIELEHLGVLFSRLEDGRIAQRAFGGHSHNRACYAADKTGHAMLHELVSNLHRNQVKIYDEWYVLRLILEEGTAKGVVMYQIATGQLEILRAKAIMFGTGGYGRVYNTTSNDFACTGDGLALSAKAGIPLEDMEFVQFHPTGLYPVGVLISEAVRGEGAYLINSEGRRFMEDYAPSRMELAPRDITSRAITLEIRAGRGVNLDGSAGGPFVYLDLRHLGREKIMSRIPFCWEEAHRLVGVDAVEEPMPVRPTVHYCMGGIPVNTDGRVRLSADTLTEGFFSAGECSCVSVHGANRLGSNSLLECVVYGRRTGKSIAKYVEKRAFPVFNPDIYLQDAKEEITALLTKKGTIRIGQLRQQFQDCMTQHCGVFRTEATMREGIKQIGELKRQYEQIYLDDRGDCWNTELIEAWELQSLMVVGEIILTSALNRQESRGAHSREDFPQRDDKNFLQHTLAYYSPSGIDIDYMPVVIQDFTPVERKY
>CP011304.1|AKE63383.1|1048267_1048996_-|hypothetical-protein
MSSILTLSPFTQSTATLKNHLKKNGFFVFDNPCGDRWLQGLEDITQATPVIQTNGEIIYPIKANPDAMGKSDAQSPGIGLLPHTEWSYKAIPPKYLCLRCKTPDRWGGGATTLVKFDDLMRHFTLEEQHFMAAQPQYFMSKDGKESCFAPIWQRDAEIIRFSYNVLVYREFSPDLSKPIASGLDSRLMALCGKFLALFEAHHVPLYLKAEQILIMDNYTCLHSRQSYIDPNRCLERVMFDVP
>CP011304.1|AKE63384.1|1049162_1052915_+|HEAT-repeat-protein
MSKERKQRGILATPTGKQKLQEAKANGRNELGKKLTYDNIAEKAVVDKKTVERFMRRLQLIDRDNALAICQALGLEITDVVDSDEWNYDESSNTEINWTEICQQALINKPLRRFATDEPCELEIFVPLGLVERKKQQRRPLNQEMERNQVYEVEEKEEITRRFEHEEFLNYIGLGTTQGESDKNIAIIGEPGAGKTTLLQNLALIISDQQKGLPICVSLGALSKERSLIGYLEETWLRDGLAVGEVKESDKADFRQLFDKKQVWLLLDGLDEYSADSPVEALTWIENEVRSGYLQKARVVVSCRVNVWDANINPLRAFVTYKTLDFADFQRDQFIRQWFGKKGNIALGEQLIACLQETGRERIWELVKNPLRLVLLCQIWSLGEGALPETKAQFYQRYLPYFYEWKREIRDLTDNDELQELLHQALGKLAIASLGGESRYRMPRKLAKAIMGNDLFKLAVDFGWLNIVDRDQATDEAVYAFFHPTFQEFFAACGVEDWDFFLPRNHVDRPVEGKVYRIFEAKWKEVILLWLGRSDVKDEEKEAFIKALVEFKDGCGEWNLPEVDRGFYEYRAYFMAANGIKEFNTCSFADKIVHQIIKWNIVNDKPLYMTTGYKLDFGNHLKTHVNKVSSVSVLADHISVYYASLQETDTKRVISKLIDLSLENNSILENNSIIELLEIIGQDNKNAIIALINMIESLSYNDEIRSHAIESLGKIGKGNTEAISELINIIKSTSYNYEIRSHAIKSLGEVGKGNIEAISELINIIKSNESTFYFYNDKNGTLNHAVESLGKIGKGNIEAISELINMIKSTSYNDAIRSQAIKSLCEIGKGNTEAISELINIINSTSYNDKIRSRAAYSLGRIESGNSEAISALIRLMQSPDSKIVNFALKSLIEIGKKNSDIISILVDIMQSHSPDSKIGDFAIKSLVEIGKENSDMIPILVDIIQSHSIKATIVSTALENLAKIGQGNLQAINTLISILESLQSQDMSLQSEDMMSESCRSRDLILASAAESLGEIGQSDPRTIAVLIHALRPLYKNYFLMQKLATRSLIKIGINNSNVINQLVNSLQSLNDQESSYWWEIIILEDIGKRDKNVIKILKKLLLVASNNNHSYSHRINLASALGKVEPGNSEAYETLIEIFISTQNLDAIKTLTEILEDKPISLVVAQKIGDYFVNNISKKMSISKKYYETIYAFFYKFTQIYSYGKFYEIWNNSFYAFQAVQINDEIDEVSAKLLQMLEKYRKKPRKKQ
>CP011304.1|AKE63385.1|1053279_1053483_+|hypothetical-protein
MNIKDYPFAQDLITDNQGQIQQVIINFEDYQQIIETYEDTGLYRAMIDVKDETPLTLEEALIELEKE
>CP011304.1|AKE63386.1|1053479_1053749_+|RelE/StbE-replicon-stabilization-toxin
MKINYLPTFIKDLKDLKSTSPYSVIKNLVFTDILAVKQLSEINNLKKLKGEYNAYRIRIGDYRIGFFIEEDTITFARVLHRREFYRYFA
>CP011304.1|AKE63387.1|1053802_1053940_+|tetratricopeptide-protein
MNHCDRAFNYCQQALELCQELGITLVKDCEELLGQIQGNLGEANK
>CP011304.1|AKE63388.1|1053941_1054274_+|hypothetical-protein
MKLPNADQANLGDKLERYCLNPEHSKGKHKALLFKQRLGITLANKEILENALKKAVMEGEAELYKIDQYGTHYDLKFNLCTDIGESLILSCWIVQITENFPRLTNVYPIN
>CP011304.1|AKE63389.1|1054284_1054527_+|hypothetical-protein
MNTIQEYDLVALTEDVTATHKTTHQPILLRRGQMGTVLMSFNQQAFLIDFTDQNGQTFAMETVDHSKLLRLISEPELVSV
>CP011304.1|AKE63390.1|1054684_1055020_+|hypothetical-protein
MDKLNHYRKIIHQILVPYSQIIYNNADIQNRLAFDPQNDQYLVISEGWQQNQRYHDCLIHLEIINEKIWVQCDNTEDGITKELLSAGIAKEDIVLGFHEPKIRQYTGFAVA

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Crispr_ID: CP011304_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_8

1232112-1232527

Orphan

Consensus_repeat	Method
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	PILER-CR
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	CRISPRCasFinder
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	CRT

5 spacers

The CRISPR arrays of CP011304_8

>merge|CP011304|8|1232112-1232527|PILER-CR,CRISPRCasFinder,CRT
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGGAGTAAGAGTAGGGCTAATTCATGAATTAGCCCTACTTTTTTAGTTTCCAACTAATCCTATTTGACCTAATAGGTAAGGTTCACTGGCTCACCACCATGCCAAGGATTCTCAATAGTGTTTCCAACTAATCCTATTTGACCTAATAGGTAAGGTCCTTGCCATTATTAGCCCTGCTCGGGCCCAAGAACTCAAGTTTCCAACTAATCCTATTTGACCTAATAGGTAAGGCAGAGCCGTAAAATCGACGGGCAGAAAATGAATTCTACTGTTTCCAACTAATCCGATTTGACCTAATAGGTAAGGTTAGTCTGATTTTTTAATCAGTGTAGAAAAGCCCCCCTCAAGTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG

>CP011304|8|1|1232112-1232527|PILER-CR
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	AGTAAGAGTAGGGCTAATTCATGAATTAGCCCTACTTTTTTA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	TTCACTGGCTCACCACCATGCCAAGGATTCTCAATAGT
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	TCCTTGCCATTATTAGCCCTGCTCGGGCCCAAGAACTCAA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	CAGAGCCGTAAAATCGACGGGCAGAAAATGAATTCTACT
GTTTCCAACTAATCCGATTTGACCTAATAGGTAAGG	TTAGTCTGATTTTTTAATCAGTGTAGAAAAGCCCCCCTCAA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG

>CP011304|8|8|1232112-1232527|CRISPRCasFinder
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	AGTAAGAGTAGGGCTAATTCATGAATTAGCCCTACTTTTTTA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	TTCACTGGCTCACCACCATGCCAAGGATTCTCAATAGT
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	TCCTTGCCATTATTAGCCCTGCTCGGGCCCAAGAACTCAA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	CAGAGCCGTAAAATCGACGGGCAGAAAATGAATTCTACT
GTTTCCAACTAATCCGATTTGACCTAATAGGTAAGG	TTAGTCTGATTTTTTAATCAGTGTAGAAAAGCCCCCCTCAA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG

>CP011304|8|1|1232112-1232527|CRT
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	AGTAAGAGTAGGGCTAATTCATGAATTAGCCCTACTTTTTTA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	TTCACTGGCTCACCACCATGCCAAGGATTCTCAATAGT
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	TCCTTGCCATTATTAGCCCTGCTCGGGCCCAAGAACTCAA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	CAGAGCCGTAAAATCGACGGGCAGAAAATGAATTCTACT
GTTTCCAACTAATCCGATTTGACCTAATAGGTAAGG	TTAGTCTGATTTTTTAATCAGTGTAGAAAAGCCCCCCTCAA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE63566.1\|1236121_1236310_-\|Prevent-host-death-protein,-Phd-antitoxin	unknown	unknown	unknown
CP011304.1\|AKE63561.1\|1231357_1231948_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236703
CP011304.1\|AKE63556.1\|1227161_1228013_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224343
CP011304.1\|AKE63557.1\|1228257_1228761_+\|Molybdenum-cofactor-biosynthesis-protein-MoaB	unknown	unknown	gnl\|CDD\|238451
CP011304.1\|AKE63560.1\|1230401_1231352_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133005
CP011304.1\|AKE63555.1\|1226306_1226819_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378226
CP011304.1\|AKE63558.1\|1228762_1229374_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE63559.1\|1229508_1230174_+\|Urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
CP011304.1\|AKE63565.1\|1235840_1236137_-\|Death-on-curing-protein,-Doc-toxin	unknown	unknown	gnl\|CDD\|368240
CP011304.1\|AKE63570.1\|1239571_1240375_-\|Putative-amidotransferase-similar-to-cobyric-acid-synthase	unknown	unknown	gnl\|CDD\|225974
CP011304.1\|AKE63568.1\|1237744_1238488_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|315619
CP011304.1\|AKE63567.1\|1236559_1237357_+\|cAMP-binding-protein	unknown	unknown	gnl\|CDD\|223736
CP011304.1\|AKE63572.1\|1242039_1243230_+\|2-alkenal-reductase	unknown	unknown	gnl\|CDD\|273938
CP011304.1\|AKE63571.1\|1240538_1241876_-\|putative-amino-acid-ligase-found-clustered-with-an-amidotransferase	unknown	unknown	gnl\|CDD\|223840
CP011304.1\|AKE63553.1\|1224026_1224965_+\|DnaJ-class-molecular-chaperone	unknown	unknown	gnl\|CDD\|197617
CP011304.1\|AKE63552.1\|1223152_1223983_+\|Inositol-1-monophosphatase	unknown	unknown	gnl\|CDD\|238817
CP011304.1\|AKE63564.1\|1234129_1235593_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|206646
CP011304.1\|AKE63554.1\|1225003_1226221_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|237043
CP011304.1\|AKE63569.1\|1238574_1239495_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE63563.1\|1233712_1233928_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE63567.1\|1236559_1237357_+\|cAMP-binding-protein	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.03612e-25
CP011304.1\|AKE63561.1\|1231357_1231948_+\|hypothetical-protein	gnl\|CDD\|236703	PRK10502, PRK10502, putative acyl transferase; Provisional.	6.20145e-113
CP011304.1\|AKE63556.1\|1227161_1228013_-\|hypothetical-protein	gnl\|CDD\|224343	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown].	1.07493e-23
CP011304.1\|AKE63557.1\|1228257_1228761_+\|Molybdenum-cofactor-biosynthesis-protein-MoaB	gnl\|CDD\|238451	cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.	3.79351e-63
CP011304.1\|AKE63560.1\|1230401_1231352_+\|hypothetical-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	2.23625e-79
CP011304.1\|AKE63555.1\|1226306_1226819_+\|hypothetical-protein	gnl\|CDD\|378226	pfam09626, DHC, Dihaem cytochrome c. Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region. Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth. In certain species DHC is found upstream of pfam01292.	2.83798e-27
CP011304.1\|AKE63559.1\|1229508_1230174_+\|Urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	4.31806e-71
CP011304.1\|AKE63565.1\|1235840_1236137_-\|Death-on-curing-protein,-Doc-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	4.09698e-07
CP011304.1\|AKE63570.1\|1239571_1240375_-\|Putative-amidotransferase-similar-to-cobyric-acid-synthase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	1.6359e-121
CP011304.1\|AKE63568.1\|1237744_1238488_+\|hypothetical-protein	gnl\|CDD\|315619	pfam12973, Cupin_7, ChrR Cupin-like domain. Members of this family are part of the cupin superfamily. This family includes the transcriptional activator ChrR.	9.4839e-39
CP011304.1\|AKE63572.1\|1242039_1243230_+\|2-alkenal-reductase	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.88636e-112
CP011304.1\|AKE63571.1\|1240538_1241876_-\|putative-amino-acid-ligase-found-clustered-with-an-amidotransferase	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	2.22533e-90
CP011304.1\|AKE63553.1\|1224026_1224965_+\|DnaJ-class-molecular-chaperone	gnl\|CDD\|197617	smart00271, DnaJ, DnaJ molecular chaperone homology domain.	4.92987e-10
CP011304.1\|AKE63552.1\|1223152_1223983_+\|Inositol-1-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	4.98823e-112
CP011304.1\|AKE63564.1\|1234129_1235593_+\|hypothetical-protein	gnl\|CDD\|206646	cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family.	1.07243e-39
CP011304.1\|AKE63554.1\|1225003_1226221_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|237043	PRK12292, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	5.61736e-145

>CP011304.1|AKE63561.1|1231357_1231948_+|hypothetical-protein
MSPEIRTDEEAWLDLRTYDQSWFDRGRSNPIILLWWLVQGILFPLSLHQMDSFRCAVLRLFGAKIGLGVKIRPTVRVTYPWKVAIGDYTWIGDDVVIYSLDNVTIGSHCVISQKCYLCTGSHDPGDRSFGLKTTPILIGNGTWIAADCFLAPGVKIGSNVVIGARSSVFADIPAQKVAWGSPCRPQYDRKMNSYSS
>CP011304.1|AKE63560.1|1230401_1231352_+|hypothetical-protein
MFSQSEKIPVSVLIPAKNEESNLPACLESVARADEVFVVDSQSSDRSIEISTNYGANVVQFYFNGRWPKKKNWSLDNLPFRNEWVLIVDCDERITPELWDEIATVIQDPNYNGYYLNRRVFFLGQWIRYGGKYPDWNLRLFKHKSGRYENLNTEDIPNTGDNEVHEHVILDGKVGYLKNDMLHIDFRDIYHWLERHNRYSNWEARVYYNILTGNDESGTIGANLFGDAVQRKRFLKKIWVKLPFKPLLRFILFYVIRFGFLDGKAGYIYGRLLSQYEYQIGVKLYELRQFGGKLNVNAPANPPIKPSEPQPVEMIK
>CP011304.1|AKE63559.1|1229508_1230174_+|Urease-accessory-protein-UreF
MLDQKELLCLLQLASPILPVGAYSYSEGLETLVEKGIISNSASLNDWLERSLCQGSIRLETAVLLRVYRCFCQEDFTKLNYWDNWLSATRETAELRQQSWQMGRSLLNLLRELAPVRDNLPEQANYATAFAIGASHWQIGEELAVLGYLHSWASNLINAGLRLIPLGQTLGQSLLIGLQPSLLTATADIISLADENLSSWSWGLSFASMNHETQYSRLFRS
>CP011304.1|AKE63558.1|1228762_1229374_-|hypothetical-protein
MSSREQHFLKINLVVLLLVLALIAGVDRAELPSSLLFYPPATPPTPIAGLLTHSFQFLCCLPPIVCLFSYALLSQEASFSNSRHFLLFSGIITGLFAINEIFRIHIILLYFNIPKFLTISVYGLAILIYGLVFWRHIRQTSYQILIIALALLTFAITIDLLQIKNRGFASLSEGIPKLLSAVNLASYFWDVCFQEISAKIKSQ
>CP011304.1|AKE63557.1|1228257_1228761_+|Molybdenum-cofactor-biosynthesis-protein-MoaB
MTFIPHPDTAPLHLSCAVVTVSDTRTPETDRSGQIIQELLTRSGHDIGLYLIIPDEPLQIQAILSEISNQNRIKVLILNGGTGIAPRDTTYDALVPLLRITLPGFGELFRYLSYQEIGSRAMASRAIAGVYQNLLVFSLPGSTNAVKLALEKLILPEISHLVKQMNG
>CP011304.1|AKE63556.1|1227161_1228013_-|hypothetical-protein
MSQLSPLQAEQIKEIGTYLRQKREESCLSMDDIAALTMIRVPMLEALETGNWEKLPELIYVKGFIKRYGDALKIDGKALADRLSPSAEQLAQEVTIPKTLPTKVVPIPKAEPAAPKAERVEPEKPAPETSPQPAKSGVFGMYLWLGLLAGIFCGIGYLFLRPPLSNPPAVTPSPSPLVSPAPVVPPAVVASPSPSPPPQVPLSAEVTIEQAAWVRVIADGKKVYEGSLQPGAKQTWTAQKSLNIRSGNAGGVKISLNEKPAQLMGKAGQIGEITLTAPPLSDQ
>CP011304.1|AKE63555.1|1226306_1226819_+|hypothetical-protein
MPSIGQVKSIFFIILFLLSILGGILLASLLQQPAIAQSPASDIVLNRYQIGQQTYLENCASCHIAIPPSILPSQTWKKILENPDSHYGIRLKPIVGITQRLIWDYLSYSSRPLRETTFVPLLIEQSSYVKVLHPRVNLPTPLGHTTCVTCHPNASRYDYQTLTPIWDDAA
>CP011304.1|AKE63554.1|1225003_1226221_+|ATP-phosphoribosyltransferase-regulatory-subunit
MIHQPPAGTRDLLPLEVTQKGWINDRLQSVFQRWGYQRIVTSTIEWLDTLTAGGTIDPSTVIQLHGDSQGLSGLRPELTASIARSAVTRMSGESYPQRLCYRANVFRRPSASYHGRQVEFYQAGVELLFSGGLLADAEILLLLADCFDSLAVPNWQIILGEAGLTRSLLSPFPDPLREQVKRCLALLDYVSLENLPYPNETLRQQARQLFHLRGNPEDVLARVAVLAQEESAQKAVNNLKSLVELLNADRSEPFPLILDLSLIQTFDYYTGIVFKAVSDHQQNLSILGQGGRYDQLLGVFHPQGQSAPGIGFSLNIEELHESLLSGQTLPSQAPPLDWLLIPLGNNAQIATFSKARSLRNADPNLRVAIDLGGRSEAQIRTYARDRMIKNLAWVQEDGSVIEESL
>CP011304.1|AKE63553.1|1224026_1224965_+|DnaJ-class-molecular-chaperone
MTFPISQGLFQYDLIDHFAILGVSIDAEQEEIRERYLKIAYKLHPDTCRTHTPDEKKLANQLLSKLVNPAYEHLGHDLSREEFRLVLGQMGKAMGKDLSKITISSEPARKLAQSSANYELAYQKILQSLAIDQYTALENTYQKIGQLSELNLVYLILTEGRGNKKTSPKVFISQSNTNQSELVRPAFTTAVQTKSKESPLEAYIRRAQASLDQNNPAQALRELRDALRQEPDNGICHALLGLAYLRQNQLSMARVHINRAWKASPQDATVIRCKRELDKAVNSNIEMQDQKEQKDEGERKGGFWSRFGGKKK
>CP011304.1|AKE63552.1|1223152_1223983_+|Inositol-1-monophosphatase
MPDTSSQLEKYLDIASEAALAAGTLILDNWGKIEKIEEKGRSGDLVTEIDRRAETEILKIIGRHFPEHGILAEESGKRPGTDSDYLWAIDPLDGTTNYAHGYPVSVVSIGLLIAGKAAVGVIYNPFRKELFRAAQGLGATLNRRPIHVSRTSELEKSLLVTGFAYDRCQTPDNNYAEFCYLTHLTQGVRRSGSAAKDLSDVACGRLDGYWERGINPWDLAAGVILIEEAGGKITAYDESPFLIETGRILATNGQIHTSLSQALQKAASWRVQFESF
>CP011304.1|AKE63563.1|1233712_1233928_+|hypothetical-protein
MNEWLKENAKVPEGEWVSGEGKALKNTVLNYDDSQQVFFNFVSLSPEKGTFPHQHFLVKDMGFNLVQVRGL
>CP011304.1|AKE63564.1|1234129_1235593_+|hypothetical-protein
MTSDPSLDRAWNTEDLEQALRGVGTIQEELNYNQARNSLSKLVERLDLTSIEKIGLEAEIDRLVALLEKLDRSLIQIAAFGLVGRGKSSILNALVGQEIFTTGPLHGVTRTIEGVNWQLSSDDTFPNLARLTLNGQGNAQVQLLDTPGIDEVDGQTREILACQVAQQVDLILFIISGDMTKVEFSALAKLREAGKPMILVFNKIDQYPEVDRLAIYEKIASERVKELLSPDEIVMVAASPLLAETVKGQDGRLKTQRFRGKPQIEALKLKILEILEREGKSLVALNSMLYADEVNEQIVARKMAIRDHGANQLIQKAVMIKASAIALNPVTVLDLFTGAVIDLAMILALSRLYGIDLTRQGAIALLQKIALNMGGISASEFLAVLGLSSLKGLLGLSIPATGGISLLPYTSIALTQAGVAGVSCYAIGQVTKTYLANGATWGPDGPKAVVASILDSLDETSILNRIKRELGSKLGGGGLFSVAKGTA
>CP011304.1|AKE63565.1|1235840_1236137_-|Death-on-curing-protein,-Doc-toxin
MADRVNYRLVWSPKAIEDVDAIASYISRDSPSYAAAVVRRILDISYSLENCPLEAKKCAEFSDDTIREKSAYAYRLIYQIQGAVVIIAAIVHSKHFLD
>CP011304.1|AKE63566.1|1236121_1236310_-|Prevent-host-death-protein,-Phd-antitoxin
MNSIRQKVESLLNQLPDDCSIEDIQYHLYVLEKVRQSLNAASLENTIPQEEVEGLLNKWLIE
>CP011304.1|AKE63567.1|1236559_1237357_+|cAMP-binding-protein
MTDNHLAATRPPPIAENFCYISLQFPQRPSGLLILMSSSVPSSDFIPLIGQETEIFNWAKSHYRNHTFAKDERVATRPGLLYFVESGAIRILGKAQVNVIDQKSCRQLPMADSEEVFLGFVGAGQPFEIVSQFPFQLQAQAHLDGTELVWLYWEDLEQWPQLRSAVMETFRHQYQRKLFWLSILGQKRSLDRLMGFLVLLLEEYGQPCLEGYYLPYTLTHAQIASAIGTTRVTVTRLIGKLRQQNSIFFKQDNLIGLPSLFLSQN
>CP011304.1|AKE63568.1|1237744_1238488_+|hypothetical-protein
MTAQSLWKPQKVHVNLLSRVSVLPTSLTWFQTNFTGIWFGCFESDHEIQDHPVTMLTRFYPGGFFPLHGHPGGEEILVLEGNFADETGVHPPGTYMLNPEGFIHRPYSEEGCLTFVKLRQHGGKTRQQVRTNIFNGSWQAGIVPEIKVQHLYEQADFSEKVWIERWLPNTQLVNVVETEIKEIFVIEGTWRDELGSYPVGSWLRYPPNCPYSPSSTTGCLIYVKTYPVTDTTARFVVGDDFQHPQAI
>CP011304.1|AKE63569.1|1238574_1239495_-|hypothetical-protein
MTGKIIDRQTAGFLVLIIPLAVLIILVFTAWPLILLVFFLTLAVKVWQDYRWSKLSTVINPYFNQLLQDNQGCLTPIDLSAKANLTAKLARQFLDKKAEEFGAQKKAVGDKGMAYYFITASTLGSIFDESDPSLEEIEEKQVPAITASRSPLTNLEQSQEAKSPLIVAEKSENSVPEVAVISSSQPLTNLGKLFEEKEEENTAAISVQETVIQEPEEIINPSLNSSASSLFQSEAEVREESLTTVSETISSMSLADLAKRLGVTPAVLGRNKKNKSEAEFADWSRIRDPDGIAWKFDAKNSLFMAT
>CP011304.1|AKE63570.1|1239571_1240375_-|Putative-amidotransferase-similar-to-cobyric-acid-synthase
MQELELKIGWLYPTLMSTYGDRGNVITIQRRCQWRDIPVTIIPLDAQTEADTFYQVDIIVGGGAQDRQQEIVMRDLQGKKAAAMKEQLSAGIPGVFTCGSPQLLGHYYEPAFGQRIEGLGLLDLVSKHPGPNAKRCIGNVVFEITASPLAEEIKAMTGEKPLVIGFENHGGRTYLQTVSPLGKVITGYGNNGEDGYEGAFYHNAIATYAHGPLLPKNPFLADWLIQKALEQKYQKPIFLTKLDDSLALKARFAMFERLELTSVTNKA
>CP011304.1|AKE63571.1|1240538_1241876_-|putative-amino-acid-ligase-found-clustered-with-an-amidotransferase
MQLFDRIRLGIAVAVAKTVTAVVKGLRLGAASVLPGEIARRLHPRLLPLLCGQVRRGVILVVGTNGKTTTSLLLRTILERQGAKVTHNTTGANLINGLITALLADANLFGTLKADYAILEVDENILPLVLKDCRPRAILALNLFRDQLDRYGEVDTISRRWQGAISPLPTDTLVILNADDPTLSHLGQQLPQRVVYFGLSEPELYLEEIPHAVDSIYCPKCGASLDYRGVYLSHLGDFSCPSCGFKKSNPAFHSHDWPQILIGVYNKYNTLAAGLVAQELGIKDREIFETVQGFKAAFGRAEELEIEGKKVRILLSKNPVGMNETIRAVADILQKEKSSTTLLVLNDRIPDGTDVSWIWDVDTEKLTRLGTTLVVTGDRLYDMALRLQYSQDSLAYPVNLIVESDLKKAIQIALNNTKNEETLHILPTYSAMLEVREILTGRKIL
>CP011304.1|AKE63572.1|1242039_1243230_+|2-alkenal-reductase
MGLLTRLGISLGLLALGGAVGVLGNQYLSRKAPLEVNTPPAIVPASLSLPVIPQNDDNVNFIAQAVQKVGPAVVRIDSAREVADQIPEEFKQPFFRRFFGDQVPIPKEHWERGTGSGFIISTEGLLLTNAHVVDGTTQVKVTLKNGQTYQGKVLGVDNMTDVALVKIEAKNLPTVTFGKAETLTPGEWAIAIGNPLGLDNTVTVGIISALGRTSSEVGVPDKRVRFIQTDAAINPGNSGGPLLNAKGEVIGINTAIRADAQGLGFAIPIETAQKVAGQLSSKGKAEHPYIGIQMVTLTPELRQQLNETKELNFNIDQNEGVIVLRVVENSPAQKAGMQAGDIIETVAGNPVKTASDVQQGVETSAIGGNLEIEINRRGKQQTLTVQPGVFPSKTSE

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Crispr_ID: CP011304_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_9

1504223-1504342

Orphan

Consensus_repeat	Method
CTGATTCGGAGCATCTTTCAATTTGACAACGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP011304_9

>merge|CP011304|9|1504223-1504342|CRISPRCasFinder
CTGATTCGGAGCATCTTTCAATTTGACAACGCCTATTGTAGGGCTAATTCATGAATTAGCCCTACACCTAGTAATTTCAGTTCCCATCTGATTAGGAGCATCTTTCAATTTGACAACGCC

>CP011304|9|9|1504223-1504342|CRISPRCasFinder
CTGATTCGGAGCATCTTTCAATTTGACAACGCC	TATTGTAGGGCTAATTCATGAATTAGCCCTACACCTAGTAATTTCAGTTCCCAT
CTGATTAGGAGCATCTTTCAATTTGACAACGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE63824.1\|1507940_1508594_+\|Type-IV-pilin-PilA	unknown	unknown	gnl\|CDD\|374761
CP011304.1\|AKE63829.1\|1512164_1513400_+\|L,L-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|181053
CP011304.1\|AKE63822.1\|1506550_1506703_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE63812.1\|1496869_1497511_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP011304.1\|AKE63827.1\|1510567_1511503_+\|Ribosome-associated-endonuclease,-involved-in-final-steps-of-23S-rRNA-maturation	unknown	unknown	gnl\|CDD\|215029
CP011304.1\|AKE63811.1\|1496257_1496875_+\|Serine-acetyltransferase	unknown	unknown	gnl\|CDD\|223975
CP011304.1\|AKE63810.1\|1495202_1496153_-\|putative-glycosyl-transferase	unknown	unknown	gnl\|CDD\|274884
CP011304.1\|AKE63814.1\|1498255_1498387_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE63821.1\|1505903_1506437_+\|General-secretion-pathway-protein-G	unknown	unknown	gnl\|CDD\|130771
CP011304.1\|AKE63823.1\|1507212_1507746_+\|General-secretion-pathway-protein-G	unknown	unknown	gnl\|CDD\|130771
CP011304.1\|AKE63820.1\|1504348_1505632_-\|TldE-protein,-part-of-TldE/TldD-proteolytic-complex	unknown	unknown	gnl\|CDD\|223389
CP011304.1\|AKE63813.1\|1497696_1498089_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370157
CP011304.1\|AKE63815.1\|1498459_1499350_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE63818.1\|1500120_1502109_-\|Protoporphyrin-IX-Mg-chelatase-subunit-D	unknown	unknown	gnl\|CDD\|274135
CP011304.1\|AKE63816.1\|1499360_1499837_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE63826.1\|1509658_1509970_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366774
CP011304.1\|AKE63819.1\|1502308_1503991_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE63825.1\|1508799_1509510_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE63817.1\|1499927_1500113_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE63828.1\|1511798_1512011_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371332

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE63824.1\|1507940_1508594_+\|Type-IV-pilin-PilA	gnl\|CDD\|374761	pfam16734, Pilin_GH, Type IV pilin-like G and H, putative. Pilin_GH is a family from Cyanobacteria. All the proteins are putatively annotated as being general secretion pathway proteins G and H, and are likely to be pilins of the type IV secretory pathway.	1.01769e-14
CP011304.1\|AKE63829.1\|1512164_1513400_+\|L,L-diaminopimelate-aminotransferase	gnl\|CDD\|181053	PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated.	0
CP011304.1\|AKE63812.1\|1496869_1497511_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.13552e-107
CP011304.1\|AKE63827.1\|1510567_1511503_+\|Ribosome-associated-endonuclease,-involved-in-final-steps-of-23S-rRNA-maturation	gnl\|CDD\|215029	PLN00016, PLN00016, RNA-binding protein; Provisional.	1.39858e-151
CP011304.1\|AKE63811.1\|1496257_1496875_+\|Serine-acetyltransferase	gnl\|CDD\|223975	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism].	9.82855e-46
CP011304.1\|AKE63810.1\|1495202_1496153_-\|putative-glycosyl-transferase	gnl\|CDD\|274884	TIGR03965, glycosyltransferase_Rv0696_family, mycofactocin system glycosyltransferase. Members of this protein family are putative glycosyltransferases, members of pfam00535 (glycosyl transferase family 2). Members appear mostly in the Actinobacteria, where they appear to be part of a system for converting a precursor peptide (TIGR03969) into a novel redox carrier designated mycofactocin. A radical SAM enzyme, TIGR03962, is a proposed to be a key maturase for mycofactocin.	1.06578e-36
CP011304.1\|AKE63826.1\|1509658_1509970_-\|hypothetical-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	2.70025e-37
CP011304.1\|AKE63823.1\|1507212_1507746_+\|General-secretion-pathway-protein-G	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	8.06764e-15
CP011304.1\|AKE63820.1\|1504348_1505632_-\|TldE-protein,-part-of-TldE/TldD-proteolytic-complex	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	2.36795e-91
CP011304.1\|AKE63813.1\|1497696_1498089_-\|hypothetical-protein	gnl\|CDD\|370157	pfam08854, DUF1824, Domain of unknown function (DUF1824). This uncharacterized family of proteins are principally found in cyanobacteria.	4.94391e-63
CP011304.1\|AKE63818.1\|1500120_1502109_-\|Protoporphyrin-IX-Mg-chelatase-subunit-D	gnl\|CDD\|274135	TIGR02442, Uncharacterized_protein_Rv2850c/MT2916, cobaltochelatase subunit. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (pfam06180). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.	0
CP011304.1\|AKE63821.1\|1505903_1506437_+\|General-secretion-pathway-protein-G	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.23577e-14
CP011304.1\|AKE63828.1\|1511798_1512011_-\|hypothetical-protein	gnl\|CDD\|371332	pfam10999, DUF2839, Protein of unknown function (DUF2839). This bacterial family of unknown function appear to be restricted to Cyanobacteria.	3.29987e-35

>CP011304.1|AKE63819.1|1502308_1503991_+|hypothetical-protein
MITTIIDRLTETNPQIMREWQGRLTPKNISIASVISLVGQLLVYLYYQNLLPVGAGFNRYCTANPPHNNDYDPYSGLKYCIQDLNGQWMIISRLWWLDVFTFLSITGIFALLVVGTYQLIADLSGEECRGTLNFIRLSPQPAKTIFIGKIFGVPILLYLVCLLALPFHLGAGLLAGIPLSLILAFYAVLIASCAFFYHAALSFALATPWLGGFQPWLGSAAVLIFVFYSSIITLSGYGGFRTPFDWLILFNPSFFLPYLVKSTFLPPDAVRYLGISQIFDLRWYGQSLWQSVIMGISLILLNFALCTYGLTRIIQRRFHNPLATLVSKPQSYWMMGCFSAISLGFVFQTLEPSYIFDNFAILSVFVAIFGLLILFALTPPRQTLQDWTRYRHLQGKKSISLGKALIFGEKSPSTLAMAVNLAIAILFILPAIFIAPLHQYKLATAAGFLLAMNMILVYAAIAQLLMLAGTNKRALLAATSIGILIIFPFLCFAVLRVDPSQSPLLWFFTFLPIAATKYATLPSFALAIFGQWLGLTLVGWQINRQLNRLGASATKALMPS
>CP011304.1|AKE63818.1|1500120_1502109_-|Protoporphyrin-IX-Mg-chelatase-subunit-D
MTLNFPLTAVVGQEAIKLALLLAAVDPALGGVVIAGRRGTAKSVMARAIHSLLPPIEIIAGNVFNCDPNHPDEWDDRTKEEYSSGEVATEVIRAPFVQIPLGVTEDRLLGSVDVEESVKQGEPVFQPGLLASAHRGILYVDEINLLDDQIANQLLTVLSEGRNQIEREGISFQHPCKPILIATYNPEEGDLRTHLLDRIAIALSADGVLSLDQRVTAVNQAIEYAVSPTAFIAQYAQEIDDLKTEIILAREWLKEVKIKPEQISYLVEEAVRGKVEGHRAEIFAVRVAKAAAALEGRDLVSADDLKRAVELVIVPRSLITPPPPEQEQQPPPPPPPPEPPQDENQQEQEEKEEEKEEEKEPEQPDNLPEEFVFDPEGVLLDPSVLYFAQMAQRQGKSGARNLIFSEDRGRYIKPMLPRGKVKRVAVDATLRAAAPYQKARRLRNPERHVIIEEGDLRSKRLARKAGSLIVFVVDASGSMALNRMQSAKGAVMRLLTEAYENRDQIALIPFRGERADVLLPPTKSITLAKKRLETLPCGGGSPLAHGLTQAVHVGMNARLSGDIGQVVIVAITDGRSNIPLAKSLGEPIPEGEKPDIKAELLDIAAKIRSLGIKLLVIDTEKKFVSTGFAKELALKAGGKYYHLPRATEQAIASMARGAIAGL
>CP011304.1|AKE63817.1|1499927_1500113_+|hypothetical-protein
MLSFSRCCHTGPKKNRKSAKFESITKAGGSPDEKIFTPTDERGFFPYTPHPTPCPQETLFW
>CP011304.1|AKE63816.1|1499360_1499837_-|hypothetical-protein
MSGVLAALLLVTSCAKAPSQFDQAQQESTARGAAAVVKESTSGGSFNQFFPPSGGGYERVYTQEKKGFAEAKLKQDGKVVAMLAISDISNNPAAANKFQDSQTTIKGFPSVKQGTTATAVLVNNRYQVKVLSREPDFTASDRQAWLAKFDLDGLAKLK
>CP011304.1|AKE63815.1|1498459_1499350_-|hypothetical-protein
MSKPIFELVDELPTNNLTVKVLKTLDYVVPGQWDNLVGFKNTIIKVTGETDESMIQQIGDRAVWLFNDKSQGYQRALWLYQTIDSADNALAAASLANAVGGKIPLMGGLIERLTPAPEKAQTIDLTLKLVTELVAFCQINGIPGDSIRDFVASLGDYSGESLMRMAALVCLDGLIPLGGSFIRKVESSLSILRPEELESNSTFASIKELIPGGNTARKLDFIGQSFDSTKGWMSGFVSERSLSQQGLLSKIQGFIDFSADKLVYVGAFLDMTTNYYEHTGIQTLARRLIERAVAEI
>CP011304.1|AKE63814.1|1498255_1498387_+|hypothetical-protein
MGTGKFIGVVRSLDFVRSFHALLFDSQSKHLHPEGKRGAFLVR
>CP011304.1|AKE63813.1|1497696_1498089_-|hypothetical-protein
MEEALKLLKEYGCIQLKIAQSPEEEEALRQAILLVNQGSESINLGICADNNEEGFKALKSYLQALGYPLPNILPEDHPEQRAVYIKYNTQRQASYLDSYTGTYRGVLISCQSENDQLVGTYGHFPLDLFS
>CP011304.1|AKE63812.1|1496869_1497511_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MGSDRNKLLLTLHGKPLLAWTLLAAMESRAIIWIGIMAQPEDFEEIREIITAINALKPVQIIQGGETRQKSVYNGLQALPEGAETVLIHDGARCLATPELFDRCAAALATCQGFIAAVPVKDTIKIVDSKGWIEDTPDRSRLWAAQTPQGFQVKLLKECHEQGRKLAWEVTDDAALLEKCGFPVKIVVGEETNLKITTPGDLAIAEYILSQRL
>CP011304.1|AKE63811.1|1496257_1496875_+|Serine-acetyltransferase
MKSFFRKLFFYVGILWLSPLIIAFQVANNRELILGDVRRWVELLGWEKRSDWLQLLALCLEAKEFRNLYYCRLFQGGSFSRFLMYILRFFYRESSYLFLDSSCSIGKGLFIQHGFSTIVMADLGDNCWINQQVTIGYKDKSGRPKIGNNVRITAGAKVLGNITIGDNVTVGANSVVVKDVPPNCVVVGIPARIIKRDGVKVDEKL
>CP011304.1|AKE63810.1|1495202_1496153_-|putative-glycosyl-transferase
MSNTLQFLPEVSVIVPIYNGEKDIPSLIDCLAKQTYPRQLVEYILVDNNSGDRTGELLGKAAEEHRGLNLIILSENHIQSSYAARNKGIKSARYPFLAFTDADCRPAAQWLTELVQPFKYTRIGLVAGEIAALTGSTWLEKYAERRHFMSPKFLLEHSFCPYGQTANLAIRREAFEKVGLFRPYLTTGGDADICWRIQQQTDWQLTYAPEAIIYHRHRSTLEDLRSQLKRYGRSNRYLHELYGVELMRPLTNQELFFTLGRWLLKELPKNTLKLLFGKADIVDLLATPLDLIGFQSRSQGQTTAKLPEKAKEIEWL
>CP011304.1|AKE63820.1|1504348_1505632_-|TldE-protein,-part-of-TldE/TldD-proteolytic-complex
MTIDPQQLIELALKSGAVAAEVYQSSSLSHPVFFEANRLKQLESSESVGTALRLWREGCPGLAVGYGDVEPEILVETALNLSYLNAPEEIEFSAPRRAVYDPIGQDVAVESLIAMGNQMIGHIRQVYPEVICSGEWECEREITRLVNSEGLYCQYTDTALSYYLGIEWVRGEDFLAVYDGEYTRSTPHPETVIKQLLQRLQWAANNVDSPTGKLPILLTSNAVTLLWGTVEMALNGKQILEQSSPWSDKIGQLVMSEKLTLSQQPDREPYSCPFDDEGTPTKFLSLIEGGRVKEFYSDRTTARLLKTTPTGNGFRPGLGVYPMPDLVNLIVAPGEGTLEDLISQIDEGLVIDQILGHGADISGDFSVNIDLGYRIEKGKITGRVKDTMVTGNVYTALQNLIALGADNQWNGSCYTPSLIVDSLSVVR
>CP011304.1|AKE63821.1|1505903_1506437_+|General-secretion-pathway-protein-G
MNSAFKFKLIQALNKKNGNKGFTLIELLVVVIIIGVLAAIALPNLLGQVAKGRQAEARTNLGVVNRAQQVYRLENTTFGTVSQLPVQFTLTYYTSVSNVSNDANGAEAHMAPAANYVNDILEYGSAVSQTTAGVFTAVICEQATPATSTALTAGVLTTAGTASTDAACDATTARPVQ
>CP011304.1|AKE63822.1|1506550_1506703_-|hypothetical-protein
MGVGDFSYQLLKAIGKGIQERIWQFPSLKRRSVRHGFQLNKLGLRFGLCH
>CP011304.1|AKE63823.1|1507212_1507746_+|General-secretion-pathway-protein-G
MNSAFKFKLIQALNKKNGNKGFTLIELLVVVIIIGVLAAIALPNLLGQVAKGRQAEARTNLGVVNRAQQVYRLENTTFGTVSQLPVQFTLTYYTSVSNVSNDANGAEAHMAPAANYVNDILEYGSAVSQTTAGVFTAVICEQATPATSAALTAGVLTTAGTASTDAACDATTARRVN
>CP011304.1|AKE63824.1|1507940_1508594_+|Type-IV-pilin-PilA
MPDSFLDSLAYCLKKLIAEIFNAQPEKYRQCCRGITMKYLLFLAIKSQGKKATGFTLVELLVVVIVLGVLTAVGLPNLLQQVAKGRQAEAQAILGQINRAQVAYRLENPTFANLTQLPISGINNARYYSFSDYDVVPTNATRSSYRAQALDPFRNDIKNYAGGVRLINGRFFTLICEAITPLQDSVFVDGSGACSSDSIGFNNDSQGTNQPSQGGPM
>CP011304.1|AKE63825.1|1508799_1509510_+|hypothetical-protein
MAIVEMQQEKVKTLTKEKLLERNYSQESRLENAQVELLKNMPAFGFDNMLANWSMLQFIQYYGDGDARRETGYGLSPDFMEIVTKNDPKFVRAYLMMSVPSSLNAGKPERTVEIMNKGLSKLTPDVTDAYFIWLYKGVDELLFLGDIPAAKKSHQMAADWAKIAGNKFIEKSARGTVKFLETNPDSRAPRVGAWMLVWLNSQNEETRKLARENIEKLGGKLLVFGDNQVMAIPPKD
>CP011304.1|AKE63826.1|1509658_1509970_-|hypothetical-protein
MTLAKVKNLYDQDFALWIEKTVKQLKSGYLSQVDLENLIEEVESLGRRDKRELKNRLITLFEQALKRRYLPLSDCYRGWEVTIKRFQSQLKAILKDSPSLCSF
>CP011304.1|AKE63827.1|1510567_1511503_+|Ribosome-associated-endonuclease,-involved-in-final-steps-of-23S-rRNA-maturation
MKILIMGGTRFIGVSLTKVLVEQGHEVVLFNRGNKPAPVAGVRQIHGDRTDPLQLKEKLKNESFEAIFDNNGRELSDTQPLVEIFRDRIGHFVYVSSAGVYLKSDQMPHKEGDKLDPKSRHKGKHETENYLSEMGLPWTSIRPVYIYGPGNYNDLEAWFFDRLVRNRPIPIPGHGEHFTQFGHVVDLAKAMAAVLGNSQAIGQVYNISGDRYVTFNGLAKACAAAMGKNAEEIEIVNYNPKKFDFGKKKPFPLRVQHFYADINKATRELNWQPEYDLVSGLTDSFQNDYLASGRDRQEIDLAIDDQILANQ
>CP011304.1|AKE63828.1|1511798_1512011_-|hypothetical-protein
MGESKRRQSALGDKYGQEENILPWLPITKSQASQAYKLTTRGAWIGIGVLAGVWLVIRFVGPAFGWWNVQ
>CP011304.1|AKE63829.1|1512164_1513400_+|L,L-diaminopimelate-aminotransferase
MATINSNYLKLKAGYLFPEIARRVQAFAAANPDANIIRLGIGDVTEPLPLACREAMIKAVEEMGDRSSFKGYGPEQGYAWLREKIAVHDFQARGCEISADEIFISDGSKCDTGNILDIFGDNNSIAVTDPVYPVYVDTNVMAGHTGEVNDRGEYEGLIYLPITAENNFTAQIPAEKVDLIYLCFPNNPTGATATKEHLTAWVNYARANGSIIFFDAAYEAFITDASLPHSIYEIEGARQCAIEFRSFSKNAGFTGTRCALTVVPQSLMAKAADGTDVQLWKLWNRRQSTKFNGVSYIVQRGAEAVYSPEGQAQVEELVKFYLQNATIIREKLTAAGLEVHGGVNAPYVWVKTPQGLSSWDFFDKLLHTCNVVGTPGSGFGAAGEGYFRLSAFNSRANVEAAMERIIDKFQG

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Crispr_ID: CP011304_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_11

1867756-1867854

TypeV

Consensus_repeat	Method
TCTTTACTAGGGGATAAGTTTGTACTTGTTAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP011304_11

>merge|CP011304|11|1867756-1867854|CRISPRCasFinder
TCTTTACTAGGGGATAAGTTTGTACTTGTTAAGAATACATCTGTATCCCCTAGTAAATCTTCCCGTTCTTTACTAGGGGATAAGTTTGTACTGGTTAAG

>CP011304|11|11|1867756-1867854|CRISPRCasFinder
TCTTTACTAGGGGATAAGTTTGTACTTGTTAAG	AATACATCTGTATCCCCTAGTAAATCTTCCCGT
TCTTTACTAGGGGATAAGTTTGTACTGGTTAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE64208.1\|1876290_1876614_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE64210.1\|1878611_1879601_-\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|372577
CP011304.1\|AKE64192.1\|1860379_1861363_+\|Putative-sulfite-oxidase-subunit-YedY	unknown	unknown	gnl\|CDD\|235431
CP011304.1\|AKE64194.1\|1861881_1862346_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366774
CP011304.1\|AKE64201.1\|1867469_1867592_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE64209.1\|1876994_1878524_-\|Maltodextrin-glucosidase	unknown	unknown	gnl\|CDD\|200489
CP011304.1\|AKE64203.1\|1868425_1868746_-\|Mobile-element-protein	unknown	unknown	unknown
CP011304.1\|AKE64196.1\|1864911_1865070_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE64197.1\|1865153_1865537_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE64211.1\|1879670_1879988_-\|alpha-amylase-family-protein	unknown	unknown	gnl\|CDD\|200489
CP011304.1\|AKE64195.1\|1862715_1863432_+\|putative-secreted-hydrolase	unknown	unknown	gnl\|CDD\|366226
CP011304.1\|AKE64198.1\|1865605_1865899_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375906
CP011304.1\|AKE64204.1\|1868787_1869750_+\|Tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|271195
CP011304.1\|AKE64202.1\|1867914_1868472_-\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|315923
CP011304.1\|AKE64206.1\|1870804_1873825_-\|High-affnity-carbon-uptake-protein-Hat/HatR	unknown	unknown	gnl\|CDD\|227265
CP011304.1\|AKE64207.1\|1873984_1876219_-\|Alkaline-serine-protease	unknown	unknown	gnl\|CDD\|274507
CP011304.1\|AKE64205.1\|1870058_1870589_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE64200.1\|1867138_1867351_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235655
CP011304.1\|AKE64199.1\|1865899_1866301_+\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|226202
CP011304.1\|AKE64193.1\|1861406_1861865_+\|Protein-of-unknown-function-DUF29	unknown	unknown	gnl\|CDD\|366774

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE64210.1\|1878611_1879601_-\|Mobile-element-protein	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.7635e-33
CP011304.1\|AKE64192.1\|1860379_1861363_+\|Putative-sulfite-oxidase-subunit-YedY	gnl\|CDD\|235431	PRK05363, PRK05363, protein-methionine-sulfoxide reductase catalytic subunit MsrP.	1.1951e-165
CP011304.1\|AKE64194.1\|1861881_1862346_+\|hypothetical-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	2.35453e-64
CP011304.1\|AKE64209.1\|1876994_1878524_-\|Maltodextrin-glucosidase	gnl\|CDD\|200489	cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
CP011304.1\|AKE64211.1\|1879670_1879988_-\|alpha-amylase-family-protein	gnl\|CDD\|200489	cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	2.19852e-16
CP011304.1\|AKE64195.1\|1862715_1863432_+\|putative-secreted-hydrolase	gnl\|CDD\|366226	pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain.	4.14663e-13
CP011304.1\|AKE64198.1\|1865605_1865899_+\|hypothetical-protein	gnl\|CDD\|375906	pfam18480, DUF5615, Domain of unknown function (DUF5615). This is a domain of unknown function found in potential toxin-antitoxin system component.	0.0030722
CP011304.1\|AKE64204.1\|1868787_1869750_+\|Tyrosine-recombinase-XerC	gnl\|CDD\|271195	cd01195, INT_C_like_5, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.1981e-56
CP011304.1\|AKE64202.1\|1867914_1868472_-\|Mobile-element-protein	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.08471e-32
CP011304.1\|AKE64206.1\|1870804_1873825_-\|High-affnity-carbon-uptake-protein-Hat/HatR	gnl\|CDD\|227265	COG4928, COG4928, Predicted P-loop ATPase [General function prediction only].	1.84379e-19
CP011304.1\|AKE64207.1\|1873984_1876219_-\|Alkaline-serine-protease	gnl\|CDD\|274507	TIGR03296, hypothetical_protein, M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than pfam05547.	2.73019e-48
CP011304.1\|AKE64200.1\|1867138_1867351_-\|hypothetical-protein	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0.00542043
CP011304.1\|AKE64199.1\|1865899_1866301_+\|Mobile-element-protein	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.7415e-13
CP011304.1\|AKE64193.1\|1861406_1861865_+\|Protein-of-unknown-function-DUF29	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	7.44524e-66

>CP011304.1|AKE64201.1|1867469_1867592_-|hypothetical-protein
MDQIRQLDRMGRPIDGILEAIDSPKAREVLAEYREFLKNK
>CP011304.1|AKE64200.1|1867138_1867351_-|hypothetical-protein
MLAIHAAKRPLCKQGKSLISHLNRAFNLSIDGDKLPLGAIVALTDLTDCLEMVSEANATDVPNSIIENLG
>CP011304.1|AKE64199.1|1865899_1866301_+|Mobile-element-protein
MEEIKMQCPECKSTHIRKNGINKQGKQNHICVTCGRQFINNYEKQKGYDEKTKRECLTAYVNGMGFRGIERLKGVHHTTVINWVKSVGELLPVAYDPETIPEVGELDELETFVGSKKTKSGCGQPLTTLKKEF
>CP011304.1|AKE64198.1|1865605_1865899_+|hypothetical-protein
MISIRFILFEEVGLAVTSDDRVVWRYAQANQMILITANRSMKGKDSLEQVMREENTPTSLPVVTIGNIERLLAEPDYRDRCVNRLVDIVVRRCIIEI
>CP011304.1|AKE64197.1|1865153_1865537_+|hypothetical-protein
MAPASNGKTAIIRTERGLTIAGTRITLYDVMDYITEHYPPKFIRAMLALNDEQLNAALSYIETYRAEVEAEYQLVLKEAEELRQYYEEQNRERVARIAAKPPKPGTEAIRAKLQAEKAKLASRAGIF
>CP011304.1|AKE64196.1|1864911_1865070_+|hypothetical-protein
MIELLATYPDRAELHQEFPELEDEDIRQALIFASSYLDDRIIELPNRYEAVT
>CP011304.1|AKE64195.1|1862715_1863432_+|putative-secreted-hydrolase
MRFSKALRFRSISILFISIFVALQVHFFPALRPANSEPVTLGTVAAVVALVKAVSASGLARGVCFSGLHMGAKECRKPSRCVEAIERVENIVNTNGSSESVRQLESWIGSASQNENCAISLSRHLTVNVNIVGLTRSAVAELDRLRNPTITSLTSGNALVNAGGKCLDIHAPDMRNNGSRVQVWDCNGQPQQQWSFSGNALVNAGGKCLDIHAPDMRNNGGRVQVWDCNGQPQQQWRF
>CP011304.1|AKE64194.1|1861881_1862346_+|hypothetical-protein
MDNKTLYEQDFYLWIRTTINQLQARQFERVDLENLLEELASMGRSEKRTIKSLLTRLLEHLLKLKYWAAERERNEGHCKGEIRTFRLDILDELKDSPSLKPYLLEIFDECYLSARKNASDRSQLPLDTFPAIPLGSLEQILDEDWFPAGDNLEI
>CP011304.1|AKE64193.1|1861406_1861865_+|Protein-of-unknown-function-DUF29
MDNKTLYEQDFYLWIRTTINQLQARQFERVDLENLLEELASMGRSEKRKIENLLIQLLVHLLKLTYWTGEKSRNEGHWKGEIINFRRQIIEEIKDSPSLKPYILEIFEECYQFARKEAQVRTQLPLDTFPPIPIGSLEQILDEDWFPTNNHE
>CP011304.1|AKE64192.1|1860379_1861363_+|Putative-sulfite-oxidase-subunit-YedY
MVLIRLAKSWQISENEVTSESVYFNRRRFLQGLIGAGIAGSSLLLTACGKSSSSEALEKSLQLPKIAGFSKNPNFLTVNRPIVAETVAGRYNNFYEFGGGKNIWLKAQKLPTNPWTVEVGGLVKNPQTYDIDTIKKTFPLEERIYRFRCVEAWSMVLPWLGFPMSALIAAVEPKPEAKFVRFTSFYDPEITKGPGLHLGALPWPYAEGLRIEEMANELAFFAVGIFGHDLPKQHGAPLRMVIPWKYGFKGAKSIVKIEFTAKQPATYWNTIDAHEYDFEANVNPSKPHPRWSQATEKFIGSRSDLSWEIIETLPYNGYGEYVASLYS
>CP011304.1|AKE64202.1|1867914_1868472_-|Mobile-element-protein
MDLLEKKTYGYRERDEEARKEFLQKIRGYAPERFVYIDEAGIDNTIDYPYGYCHKSERFEALKLGHCSERVSVISGWWRGSTIAPMVFEGYCNTELVCEWIEQLLLPELLPGQIIIIDNASFHPKERIKKLLAKAGCEVLFLPAYSPDLNKIEKFWARLKNYVSQIINDSENLVDAVSKAFRHLS
>CP011304.1|AKE64203.1|1868425_1868746_-|Mobile-element-protein
MSAVERGEKKSHVCRTLNISRNTLDIWLKRKKQTGTVAAKTNYRRGPKPQIDDLEAFQKFAEQYGHLTQEKMAQKWANPVSRMRIGQALKRIGFTRKKNLWLQRKR
>CP011304.1|AKE64204.1|1868787_1869750_+|Tyrosine-recombinase-XerC
MSATDLTKREDIAPLDNPDVLAQLLAAKRSPRTRHAYAGDLKDFFVFAFGCEEPTPGVTQEFLSLDRFAALSLVLRYKAHLRDERGLAEATRNRRLSAIKSLVRLANQLGQCDFNLSELSGDKVVRYRDTTGVSKEVYRDLLAVPDRSTLKGKRDYAILRLLWDNALRRGEIESADIKDLDTEGRTLAIFGKGRGQQKETVSLSRPTLDALVDWLRERRELDIRQPLFIALDRCSRGHRLTGSAIHKLVAKIAAAAGVNKKMSPHRVRHSGITAALDATGGDVRRVQKLSRHADLNTLMIYDDNRKNVQGEISDLLAGLV
>CP011304.1|AKE64205.1|1870058_1870589_+|hypothetical-protein
MRPLAVLAPQQQPTVWNESVAEAGGRTPDHRIVRETVGKYRDKGKANVFEVGEVVGILAKDNPRLKGKNNCWAIVTAVHPRSCDLRLHDGAIDLVKIEYLKELGYTEGDCQTVRRLCERKALATRDRLSRLREREDLEDAALAFLGILGKLQRPYLSALEEEMLTMLEKYYGVVTD
>CP011304.1|AKE64206.1|1870804_1873825_-|High-affnity-carbon-uptake-protein-Hat/HatR
MKRKALVIGVNQYKEGIPCPQHSLKDAEDIAELLRTIGQFDQVQILLNQFEQQDKDHKNPYEPDQLKFLIEQLFNPQDGDTETALFYFSGNGAEIYEAEGKETQKGELLLTDFPNPLNESSSEHTSELRSRSISLKWLHDQLEKSPVKQQIVWLDSDFSNLFIDLFSQTSSEVKYDRCFIAASYDYAGENSTHGVLTDALLSCLNPVIKILITNYTLEDALINTFNWQKNLIKNIGNRILLTGRNVRPQKLWNDLAEGKDLLNLKSEADALADMLLLRDLEPPLAVGILGGWGSGKSFIMNLMQQRMNEIRSASLTKKQTWGKEEEAFPYVGHIYQIKFDAWTYAKADLWYSLTQTIFYEFNRQYTLEQQIEQSLKKVNRSQLEGGKFWKALNAMSEFDRTASLRELANFSEQTYNELEKSKSDQEFSSSLWEKIGDIRKNEKSELQNLKERLRKENRKLRGLILRKMPSYFLQKNWLSLVAFLAGLSIVAFPLLPDQLRDQLPKKLSDVLSTYTTLIQTGGFITALGTGISLLQKTQEEQEKILTGLKQIAGEAKEKFEVGKDVWVTLQQEILQSDRDIEQQVNKIKRHELQIEQLQQQIGLVSNYPTLNTFLEDISKNELYEKKLGYLHQLQRNLAELTNCLHYNPKMKDNDEQFSKLEKTFPRGPARIVLFIDDLDRCPPDRVVEVLEAVQLLVKTPLFIAVVAIDERYVTRALEKYYAGVLFHQGRPSGTDYLEKIIQIPYRIRPVAHSALANYLHQQMEVEESDEETSNVAVSTENISTISVDNSQSNKTDFTENKVGGKLLDSDRDKSVTILTPEKIKFKSEEFKILLECCRHTDLPPRMIKRLVNIYKIFKIIEFLSNKVWLKSNEQTKAILSVLSLSAYYPDLIREVFDDLDIQFEELESQLEGLKQEEKQQQMQKLKLLDSLLKTLESLLNTSEEKDAPHLQREYRRLHHDATILLSGITLAQFDLETFNLVRSFCFFGDVGYSPEDSQRTVRSHQG
>CP011304.1|AKE64207.1|1873984_1876219_-|Alkaline-serine-protease
MSAIFGETVIFQQDNGLDVELVVFGDEFYARYETKDGYTAVYDPERGLYCYAVLLNGRFASSGVPISKHPPSDIRRGLKEAETIRNEKFERRYADLRPPQPGAAANVARTLGPNNGLLEGRRVSEGHIRGLTVLVEFADLTSAVTAADVEAMLNAPNYRENGNFCSVREYYHLMSNGKLDYSNVVVGPIKLSQNQRYYVQNLLCREALDKVVNQLRINLSQFDSCGESIVDALSFMYAGRTVYEGNLWPHNSELNLIYNGIKVRYYTIQSLGRERVDLSIGTFCHESGHLLCRLPDLYDYGSRDGDFEKSAGMGYYCLMSAGNHLNNGHTPAPICGYLRDLVGWCDRQVRLNSPGVYESKQGDYGTLMKYETDRANEYFIIENRTQRGLDAYLPDSGLAVYHCDTLGSNEWQGGTRERHYQCGLLQADGHLDIESNRNQGDSTDLFKRVDGVALSYATTPSTRDWDSSDSGLALADISEPGEVIRLKVGSLVPSNVVTGKVTADLLIPDNKREGISCAIAISQAGKVKSLSVSIDITHTYIGDLQVELQSPSGKKVLLHDRAGGSRRDWQQTYSSSSTPALSVLNGELIAGDWLLNVRDLASRDIGRLNRWNIEIEYESAGQVARGEVSPNLSIPDNTPTGISSAIAIAQSGTLKDISVGVVIPHTYIGDLLVEIVAPSGQSVTLHNISGGSKDNLRMTYDRTSTPALEALIGQPIQGNWSLRVKDLQRLDTGKLEKWSLQLMY
>CP011304.1|AKE64208.1|1876290_1876614_-|hypothetical-protein
MSAIFGETLTFPQENGPEVELVVFGDEFYSRRETKDGYTVIYDDKLGQYGYAILCEGEFASSGIPISAPPSPGLQPHLEETEPIRREKFARRYTQLRPSDPDLPSQT
>CP011304.1|AKE64209.1|1876994_1878524_-|Maltodextrin-glucosidase
MKRLGVTALWISPIFKQVRFRETYHGYGIQNFLEVEPHFGSREDLQKVVQTAHANGIYVILDIILNHAGNVFSYLGEQDHPWTGEMYPVEGFNDKNGSPTIPFTKPDPQNPPDYDGALFPVELQAPDTFTRKGYIKNWDYDPEFREGDFFDLKDIDHGYGSADDYLVSPALRHLCEAYKYWIAYADIDGFRIDTVKHMDMGATRYFVSVIREFAQGIGKENFFLLGEITGGRKRAYETLELTGLSAALGIDDIPDKLEYLVKGYRNPNEYFSLFRNSELVNKSSHIWFRNKMVTSFDDHDQVRKGNQKARFCADADASKVVLNVLALNALTLGIPCIYYGSEQCFDGRGGSDRYIRESMFGGEFGAFRTRGLHFFNEDHLVYRELAKILEIRRQNILLRRGRQYLRPISAPDDGVRFNLPEMVNGQIRSVVPWSRIFDGKEMLLAINTDYDQPKTAWVTIDNDLHCAGDGLTCLYSTDATQIGQSVTVAARNGKAVLVTVPAAAFVIFE
>CP011304.1|AKE64210.1|1878611_1879601_-|Mobile-element-protein
MKNYTWEYIQKYPKQTKRLLGIDYQQLEQLMALGKLIHRKNQSEIEKTKIRINQPGSGTPPKLSEEEQIVLMLVYLRHHLSFQILGLIFQVSESTAHNIFTYWQKLFEGELPPSLLEQIKKCQEEEIIIEQLRDYELIVDSAEQPVERPTDYQEQKIYYSGKQKRHTLKSQFIVLPKAEDIVDVVIGQPGPTSDIKICRQTLSKFDSQQTFIGDKAYLGENQIRTPDKKPKNGELTENQIKENKVLSSRRIFVEHLIRVVKVFKVVQERFRLNKSRYKSVLLTVCGLVRLRISALILEVIEGEQSGEVIDVIISHSFPSKLDFVSSNPD
>CP011304.1|AKE64211.1|1879670_1879988_-|alpha-amylase-family-protein
MTTTVQGLSQLNFASLSPAGGLFPSPIAWEDQAFYFLMLDRFSNGRENGYKDNEGNFVQSGTTLPYSPADAGNAVKTEADAARWREAGTKYVGGTLKGLESKIGY

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Crispr_ID: CP011304_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_12

1882171-1882337

TypeV

Consensus_repeat	Method
CTCTCTACTCGCCCTTAGAAATC	CRISPRCasFinder

2 spacers

cas14j

The CRISPR arrays of CP011304_12

>merge|CP011304|12|1882171-1882337|CRISPRCasFinder
CTCTCTACTCGCCCTTAGAAATCCGTGAAATCGAAACATCATATTTCGCTGTACGCGTCTGGGTTGAACGGCTCTCTACTCGCCCTTAGAAATCCGTTGAATGGAAACTAACCAGTAAGATTCGTCAGCCGATGGATTCATAGTCTCTCTACTCGCGCTTAGAAATC

>CP011304|12|12|1882171-1882337|CRISPRCasFinder
CTCTCTACTCGCCCTTAGAAATC	CGTGAAATCGAAACATCATATTTCGCTGTACGCGTCTGGGTTGAACGG
CTCTCTACTCGCCCTTAGAAATC	CGTTGAATGGAAACTAACCAGTAAGATTCGTCAGCCGATGGATTCATAGT
CTCTCTACTCGCGCTTAGAAATC

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE64208.1\|1876290_1876614_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE64210.1\|1878611_1879601_-\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|372577
CP011304.1\|AKE64218.1\|1885117_1885237_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380307
CP011304.1\|AKE64216.1\|1883636_1884179_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377411
CP011304.1\|AKE64220.1\|1885528_1887265_-\|serine/threonine-kinase	unknown	unknown	gnl\|CDD\|224182
CP011304.1\|AKE64205.1\|1870058_1870589_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE64213.1\|1880872_1881115_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182082
CP011304.1\|AKE64211.1\|1879670_1879988_-\|alpha-amylase-family-protein	unknown	unknown	gnl\|CDD\|200489
CP011304.1\|AKE64223.1\|1888066_1888204_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE64214.1\|1881119_1881557_+\|Toxin-1,-PIN-domain	unknown	unknown	gnl\|CDD\|350248
CP011304.1\|AKE64224.1\|1888160_1888301_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE64217.1\|1884179_1884581_+\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|226202
CP011304.1\|AKE64206.1\|1870804_1873825_-\|High-affnity-carbon-uptake-protein-Hat/HatR	unknown	unknown	gnl\|CDD\|227265
CP011304.1\|AKE64209.1\|1876994_1878524_-\|Maltodextrin-glucosidase	unknown	unknown	gnl\|CDD\|200489
CP011304.1\|AKE64222.1\|1887649_1887874_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE64207.1\|1873984_1876219_-\|Alkaline-serine-protease	unknown	unknown	gnl\|CDD\|274507
CP011304.1\|AKE64221.1\|1887257_1887635_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE64215.1\|1882483_1883605_+\|Mobile-element-protein	cas14j	-	gnl\|CDD\|223747
CP011304.1\|AKE64212.1\|1880280_1880427_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE64219.1\|1885332_1885575_-\|serine/threonine-kinase	unknown	unknown	gnl\|CDD\|224182

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE64218.1\|1885117_1885237_-\|hypothetical-protein	gnl\|CDD\|380307	NF033474, DivGenRetAVD, diversity-generating retroelement protein Avd. Avd (accessory variability determinant) is part of diversity-generating retroelement (GDR) system through which a portion of a protein-coding gene can be rewritten, creating diversity that can affect host range. The founding member of this family, bAvd, from a Bordetella bacteriophage, belongs to a retrohoming element called BPP-1. Members of this family are four-helix bundle proteins, related to those of family TIGR02436, some of whose members are found in long intervening sequence (IVS) regions in 23S rRNA.	7.94382e-06
CP011304.1\|AKE64210.1\|1878611_1879601_-\|Mobile-element-protein	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.7635e-33
CP011304.1\|AKE64216.1\|1883636_1884179_+\|hypothetical-protein	gnl\|CDD\|377411	pfam04832, SOUL, SOUL heme-binding protein. This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologs.	5.88179e-06
CP011304.1\|AKE64220.1\|1885528_1887265_-\|serine/threonine-kinase	gnl\|CDD\|224182	COG1262, COG1262, Uncharacterized conserved protein [Function unknown].	3.81809e-48
CP011304.1\|AKE64209.1\|1876994_1878524_-\|Maltodextrin-glucosidase	gnl\|CDD\|200489	cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
CP011304.1\|AKE64213.1\|1880872_1881115_+\|hypothetical-protein	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	7.40902e-05
CP011304.1\|AKE64211.1\|1879670_1879988_-\|alpha-amylase-family-protein	gnl\|CDD\|200489	cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	2.19852e-16
CP011304.1\|AKE64214.1\|1881119_1881557_+\|Toxin-1,-PIN-domain	gnl\|CDD\|350248	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins. This subfamily includes Mycobacterium tuberculosis VapC27 and VapC40. It belongs to the VapC (virulence-associated protein C)-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	5.81306e-16
CP011304.1\|AKE64217.1\|1884179_1884581_+\|Mobile-element-protein	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.4659e-13
CP011304.1\|AKE64206.1\|1870804_1873825_-\|High-affnity-carbon-uptake-protein-Hat/HatR	gnl\|CDD\|227265	COG4928, COG4928, Predicted P-loop ATPase [General function prediction only].	1.84379e-19
CP011304.1\|AKE64207.1\|1873984_1876219_-\|Alkaline-serine-protease	gnl\|CDD\|274507	TIGR03296, hypothetical_protein, M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than pfam05547.	2.73019e-48
CP011304.1\|AKE64215.1\|1882483_1883605_+\|Mobile-element-protein	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.33233e-71
CP011304.1\|AKE64219.1\|1885332_1885575_-\|serine/threonine-kinase	gnl\|CDD\|224182	COG1262, COG1262, Uncharacterized conserved protein [Function unknown].	5.3775e-14

>CP011304.1|AKE64214.1|1881119_1881557_+|Toxin-1,-PIN-domain
MIKVLFDTSVLVASILVNHEQHSACISWLTRVKRGEIQGYIGTHTLAELYAILSAFPAKPRLSPQLVQQLIKENLDSFEIISLTSDDYKAVINLMVTLNLRGGAIYDALIAYGSLKAEVDHLLTLNLKHFIRFGGRIEKISMEPR
>CP011304.1|AKE64213.1|1880872_1881115_+|hypothetical-protein
MELVTLDRSRCIQIPETLLEQLGIEYDSQFQVEVQDGKLVLNPIKEEPKVYYENDVLVVDSQLLVNTEAFIEELRQERMS
>CP011304.1|AKE64212.1|1880280_1880427_+|hypothetical-protein
MNSWYLLKLHFQRYRAEAILLRSNNRKIGNAISRYQPIYRPKMLVIAK
>CP011304.1|AKE64211.1|1879670_1879988_-|alpha-amylase-family-protein
MTTTVQGLSQLNFASLSPAGGLFPSPIAWEDQAFYFLMLDRFSNGRENGYKDNEGNFVQSGTTLPYSPADAGNAVKTEADAARWREAGTKYVGGTLKGLESKIGY
>CP011304.1|AKE64210.1|1878611_1879601_-|Mobile-element-protein
MKNYTWEYIQKYPKQTKRLLGIDYQQLEQLMALGKLIHRKNQSEIEKTKIRINQPGSGTPPKLSEEEQIVLMLVYLRHHLSFQILGLIFQVSESTAHNIFTYWQKLFEGELPPSLLEQIKKCQEEEIIIEQLRDYELIVDSAEQPVERPTDYQEQKIYYSGKQKRHTLKSQFIVLPKAEDIVDVVIGQPGPTSDIKICRQTLSKFDSQQTFIGDKAYLGENQIRTPDKKPKNGELTENQIKENKVLSSRRIFVEHLIRVVKVFKVVQERFRLNKSRYKSVLLTVCGLVRLRISALILEVIEGEQSGEVIDVIISHSFPSKLDFVSSNPD
>CP011304.1|AKE64209.1|1876994_1878524_-|Maltodextrin-glucosidase
MKRLGVTALWISPIFKQVRFRETYHGYGIQNFLEVEPHFGSREDLQKVVQTAHANGIYVILDIILNHAGNVFSYLGEQDHPWTGEMYPVEGFNDKNGSPTIPFTKPDPQNPPDYDGALFPVELQAPDTFTRKGYIKNWDYDPEFREGDFFDLKDIDHGYGSADDYLVSPALRHLCEAYKYWIAYADIDGFRIDTVKHMDMGATRYFVSVIREFAQGIGKENFFLLGEITGGRKRAYETLELTGLSAALGIDDIPDKLEYLVKGYRNPNEYFSLFRNSELVNKSSHIWFRNKMVTSFDDHDQVRKGNQKARFCADADASKVVLNVLALNALTLGIPCIYYGSEQCFDGRGGSDRYIRESMFGGEFGAFRTRGLHFFNEDHLVYRELAKILEIRRQNILLRRGRQYLRPISAPDDGVRFNLPEMVNGQIRSVVPWSRIFDGKEMLLAINTDYDQPKTAWVTIDNDLHCAGDGLTCLYSTDATQIGQSVTVAARNGKAVLVTVPAAAFVIFE
>CP011304.1|AKE64208.1|1876290_1876614_-|hypothetical-protein
MSAIFGETLTFPQENGPEVELVVFGDEFYSRRETKDGYTVIYDDKLGQYGYAILCEGEFASSGIPISAPPSPGLQPHLEETEPIRREKFARRYTQLRPSDPDLPSQT
>CP011304.1|AKE64207.1|1873984_1876219_-|Alkaline-serine-protease
MSAIFGETVIFQQDNGLDVELVVFGDEFYARYETKDGYTAVYDPERGLYCYAVLLNGRFASSGVPISKHPPSDIRRGLKEAETIRNEKFERRYADLRPPQPGAAANVARTLGPNNGLLEGRRVSEGHIRGLTVLVEFADLTSAVTAADVEAMLNAPNYRENGNFCSVREYYHLMSNGKLDYSNVVVGPIKLSQNQRYYVQNLLCREALDKVVNQLRINLSQFDSCGESIVDALSFMYAGRTVYEGNLWPHNSELNLIYNGIKVRYYTIQSLGRERVDLSIGTFCHESGHLLCRLPDLYDYGSRDGDFEKSAGMGYYCLMSAGNHLNNGHTPAPICGYLRDLVGWCDRQVRLNSPGVYESKQGDYGTLMKYETDRANEYFIIENRTQRGLDAYLPDSGLAVYHCDTLGSNEWQGGTRERHYQCGLLQADGHLDIESNRNQGDSTDLFKRVDGVALSYATTPSTRDWDSSDSGLALADISEPGEVIRLKVGSLVPSNVVTGKVTADLLIPDNKREGISCAIAISQAGKVKSLSVSIDITHTYIGDLQVELQSPSGKKVLLHDRAGGSRRDWQQTYSSSSTPALSVLNGELIAGDWLLNVRDLASRDIGRLNRWNIEIEYESAGQVARGEVSPNLSIPDNTPTGISSAIAIAQSGTLKDISVGVVIPHTYIGDLLVEIVAPSGQSVTLHNISGGSKDNLRMTYDRTSTPALEALIGQPIQGNWSLRVKDLQRLDTGKLEKWSLQLMY
>CP011304.1|AKE64206.1|1870804_1873825_-|High-affnity-carbon-uptake-protein-Hat/HatR
MKRKALVIGVNQYKEGIPCPQHSLKDAEDIAELLRTIGQFDQVQILLNQFEQQDKDHKNPYEPDQLKFLIEQLFNPQDGDTETALFYFSGNGAEIYEAEGKETQKGELLLTDFPNPLNESSSEHTSELRSRSISLKWLHDQLEKSPVKQQIVWLDSDFSNLFIDLFSQTSSEVKYDRCFIAASYDYAGENSTHGVLTDALLSCLNPVIKILITNYTLEDALINTFNWQKNLIKNIGNRILLTGRNVRPQKLWNDLAEGKDLLNLKSEADALADMLLLRDLEPPLAVGILGGWGSGKSFIMNLMQQRMNEIRSASLTKKQTWGKEEEAFPYVGHIYQIKFDAWTYAKADLWYSLTQTIFYEFNRQYTLEQQIEQSLKKVNRSQLEGGKFWKALNAMSEFDRTASLRELANFSEQTYNELEKSKSDQEFSSSLWEKIGDIRKNEKSELQNLKERLRKENRKLRGLILRKMPSYFLQKNWLSLVAFLAGLSIVAFPLLPDQLRDQLPKKLSDVLSTYTTLIQTGGFITALGTGISLLQKTQEEQEKILTGLKQIAGEAKEKFEVGKDVWVTLQQEILQSDRDIEQQVNKIKRHELQIEQLQQQIGLVSNYPTLNTFLEDISKNELYEKKLGYLHQLQRNLAELTNCLHYNPKMKDNDEQFSKLEKTFPRGPARIVLFIDDLDRCPPDRVVEVLEAVQLLVKTPLFIAVVAIDERYVTRALEKYYAGVLFHQGRPSGTDYLEKIIQIPYRIRPVAHSALANYLHQQMEVEESDEETSNVAVSTENISTISVDNSQSNKTDFTENKVGGKLLDSDRDKSVTILTPEKIKFKSEEFKILLECCRHTDLPPRMIKRLVNIYKIFKIIEFLSNKVWLKSNEQTKAILSVLSLSAYYPDLIREVFDDLDIQFEELESQLEGLKQEEKQQQMQKLKLLDSLLKTLESLLNTSEEKDAPHLQREYRRLHHDATILLSGITLAQFDLETFNLVRSFCFFGDVGYSPEDSQRTVRSHQG
>CP011304.1|AKE64205.1|1870058_1870589_+|hypothetical-protein
MRPLAVLAPQQQPTVWNESVAEAGGRTPDHRIVRETVGKYRDKGKANVFEVGEVVGILAKDNPRLKGKNNCWAIVTAVHPRSCDLRLHDGAIDLVKIEYLKELGYTEGDCQTVRRLCERKALATRDRLSRLREREDLEDAALAFLGILGKLQRPYLSALEEEMLTMLEKYYGVVTD
>CP011304.1|AKE64215.1|1882483_1883605_+|Mobile-element-protein
MRDMEKAYSFRFYPTPEQESLLRRTLGCVRLVYNKALHERTQAWYERQERVGYAQTSSMLTDWKKQEELDFLNEVSCVPLQQGLRHLQTAFTNFFAGRTKYPNFKKKHQGGSAEFTKSAFKFKDRQIYLAKCTEPLPIRWSRQIPESCEPSTVTVRLHPSGRWHISIRFDDPTIQPLPPTDKAIGIDLGISSLVITSDGDKVSNPKHFKKHYQRLRKAQKSLSRKQKGSKNREKARIKVAKIHAKITDNRKDHLHKLTTQLVRENQTIVVENLAVKNMVKNPKLSQAISDVSWGEITRQLAYKCRWYGRNYIEIDRWFPSSKRCSNCGYIAEKMPLNIREWDCPDCGTHHDRDVNASKNILAAGLAVSVCRAT
>CP011304.1|AKE64216.1|1883636_1884179_+|hypothetical-protein
MRKILRERSRNPNREVWESPSVYGGEDVNALTALVIGVYQASSAPLPAGFPTPTPNGRIEVKNYPAYRAATYRYRGQLSEAANRSFYPLYQHISSNDISMTAPVETRYPADTGATSGEAEVFFLYRDTDTYPKEVADNIRIEDVPPMTVVSLGLQGGYDFDSYQQGLTRLNEWRRCIIEI
>CP011304.1|AKE64217.1|1884179_1884581_+|Mobile-element-protein
MEEIKMQCPECKSTHIRKNGINKQGKQNHICVTCGRQFINNYEKQKGYDEKTKRECLTAYVNGMGFRGIERLKGVHHTTVINWVKSVGELLPVAYDPETIPEVGELDELENFVGSKKTKSGCGQPLTTLKKEF
>CP011304.1|AKE64218.1|1885117_1885237_-|hypothetical-protein
MALMLNFIKAMKELSVIQKCYDLVKWYVPIIERFPALLN
>CP011304.1|AKE64219.1|1885332_1885575_-|serine/threonine-kinase
MHGNVWEWCADTWHDNYDGAPTDGSAWIENGDDNRSPPRGGSWFSIPYLCRSAFRYYCVRRVNDDDLFGFRVVCGAGRTL
>CP011304.1|AKE64220.1|1885528_1887265_-|serine/threonine-kinase
MAKNWVIAIGINEYDNLKPLKYAKKDAEAIKAWCEGEGGFDRSGIFLFTEDSPPIPASPPIPTQPTYGRLKRFLQKQFETPLLKSGDNLWFFFAGHGRRYQDKDYLMLPDSDPGNVRETAVSVDYVTERLRRSGADNVVLLLDACRDEDSRGGLGIGEEEHQGVITFYSCTANQQSWEIDELQQGSFTHTLLEGLRRQGEANCATVERLDEHLRRQVEQTNARYGKPRQNPYLKAEPPHKLYFILLEQVATLRDVQPLKYQASLAENRGDLDLAEQLWIRVLGASRGDLEAIEAIKRIALRQSQSIRQRAIERRRPWSSIPATGREYVTGAEGNRSSTPKPSQETGLKVFNFEIVGVNAKGEQIKKESKQSQYFAQDLGNGITLEMVAIPGGTFTMGTEDEEIERLVKKFNWEGFRKERPQHEVTVPPFFMGKYPITQAQWKAIASLTDLKVEKDLDLNPAHFKDRPDSDRRPVEQVNWDHAIEFCARLSKLTGREYRLPSEAEWEYACRAGTTTPFYFGETITGELANYRSSETYADEPNGEYRQQTTPVGQFSPQCLRTVRYARQCLGMVRRYLAR
>CP011304.1|AKE64221.1|1887257_1887635_-|hypothetical-protein
MTEDIATPSKIWIITGDSDLQKTPTGARSSRDTGGRLEGKEKSPEVAATERSQVDVSKLKLEMQGFLKAMREMLDEADPPSAKIRLDEVELSVEINGEGQVSLFGIGGKAGGKGAMTFKFKRKDG
>CP011304.1|AKE64222.1|1887649_1887874_-|hypothetical-protein
MGKPQIAVRIPPSLLAELNQYVERVGTSKTDVIVSAIATYLGCAETVPLSQRIAEVERKIMELESLVKGKRDNI
>CP011304.1|AKE64223.1|1888066_1888204_+|hypothetical-protein
MNKKFSLAQKYSATISALTWDFSIDLPKKNFVTFCHNLLAHHLKL
>CP011304.1|AKE64224.1|1888160_1888301_-|hypothetical-protein
MALSAQISSWMTKDYLEEKAQQGSWEKFQQALAKVSDGEPEDYDKM

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Crispr_ID: CP011304_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_14

2271790-2271886

TypeV

Consensus_repeat	Method
TCAGTAAACAGTAAACAGTAATCAG	CRISPRCasFinder

1 spacers

cas14k

The CRISPR arrays of CP011304_14

>merge|CP011304|14|2271790-2271886|CRISPRCasFinder
TCAGTAAACAGTAAACAGTAATCAGTAAACAGTAAACAGTAATCAGTGAGACACTGTTGATGGGAGTTTTTTTCAGTGGTCAGTAAACAGTAAACAG

>CP011304|14|14|2271790-2271886|CRISPRCasFinder
TCAGTAAACAGTAAACAGTAATCAG	TAAACAGTAAACAGTAATCAGTGAGACACTGTTGATGGGAGTTTTTT
TCAGTGGTCAGTAAACAGTAAACAG

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE64613.1\|2254434_2255646_-\|2-octaprenyl-6-methoxyphenol-hydroxylase	unknown	unknown	gnl\|CDD\|236001
CP011304.1\|AKE64626.1\|2278554_2280123_-\|Hopanoid-2-methyltransferase	unknown	unknown	gnl\|CDD\|379101
CP011304.1\|AKE64623.1\|2275083_2275266_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225777
CP011304.1\|AKE64617.1\|2260012_2263477_-\|adenine-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|227226
CP011304.1\|AKE64622.1\|2274314_2274794_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283241
CP011304.1\|AKE64630.1\|2283813_2284662_-\|transglutaminase-domain-protein	unknown	unknown	gnl\|CDD\|224224
CP011304.1\|AKE64628.1\|2281909_2283148_-\|Mobile-element-protein	cas14k	-	gnl\|CDD\|223747
CP011304.1\|AKE64620.1\|2270879_2271737_-\|Succinyl-CoA-ligase-[ADP-forming]-alpha-chain	unknown	unknown	gnl\|CDD\|223152
CP011304.1\|AKE64624.1\|2275437_2276109_-\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225546
CP011304.1\|AKE64611.1\|2251987_2253910_-\|prolyl-oligopeptidase-family-protein	unknown	unknown	gnl\|CDD\|224423
CP011304.1\|AKE64625.1\|2276215_2278525_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227922
CP011304.1\|AKE64621.1\|2273091_2273955_-\|Cyanophycinase	unknown	unknown	gnl\|CDD\|131124
CP011304.1\|AKE64627.1\|2281486_2281615_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379519
CP011304.1\|AKE64612.1\|2254154_2254286_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE64618.1\|2263718_2265905_-\|Modification-methylase-DsaV	unknown	unknown	gnl\|CDD\|365904
CP011304.1\|AKE64616.1\|2259853_2259967_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE64614.1\|2255854_2256697_+\|gamma-tocopherol-methyltransferase,-delta-tocopherol-methyltransferase	unknown	unknown	gnl\|CDD\|215135
CP011304.1\|AKE64629.1\|2283119_2283737_-\|resolvase-like-protein	unknown	unknown	gnl\|CDD\|239738
CP011304.1\|AKE64615.1\|2257549_2259403_-\|putative-peptidase	unknown	unknown	gnl\|CDD\|366703
CP011304.1\|AKE64619.1\|2265974_2270579_-\|Ferredoxin-dependent-glutamate-synthase	unknown	unknown	gnl\|CDD\|236968

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE64613.1\|2254434_2255646_-\|2-octaprenyl-6-methoxyphenol-hydroxylase	gnl\|CDD\|236001	PRK07364, PRK07364, FAD-dependent hydroxylase.	0
CP011304.1\|AKE64626.1\|2278554_2280123_-\|Hopanoid-2-methyltransferase	gnl\|CDD\|379101	pfam13282, DUF4070, Domain of unknown function (DUF4070). This is a bacterial domain often found at the C-terminus of Radical_SAM methylases.	2.90741e-63
CP011304.1\|AKE64623.1\|2275083_2275266_-\|hypothetical-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	4.92518e-08
CP011304.1\|AKE64617.1\|2260012_2263477_-\|adenine-specific-DNA-methyltransferase	gnl\|CDD\|227226	COG4889, COG4889, Predicted helicase [General function prediction only].	2.67676e-25
CP011304.1\|AKE64622.1\|2274314_2274794_-\|hypothetical-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	3.20648e-09
CP011304.1\|AKE64630.1\|2283813_2284662_-\|transglutaminase-domain-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	2.19302e-31
CP011304.1\|AKE64628.1\|2281909_2283148_-\|Mobile-element-protein	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.70413e-24
CP011304.1\|AKE64620.1\|2270879_2271737_-\|Succinyl-CoA-ligase-[ADP-forming]-alpha-chain	gnl\|CDD\|223152	COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy production and conversion].	2.63794e-76
CP011304.1\|AKE64624.1\|2275437_2276109_-\|sterol-desaturase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	8.01248e-34
CP011304.1\|AKE64611.1\|2251987_2253910_-\|prolyl-oligopeptidase-family-protein	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	3.16425e-77
CP011304.1\|AKE64625.1\|2276215_2278525_-\|hypothetical-protein	gnl\|CDD\|227922	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms].	1.12422e-178
CP011304.1\|AKE64621.1\|2273091_2273955_-\|Cyanophycinase	gnl\|CDD\|131124	TIGR02069, cyanophycinase, cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. [Energy metabolism, Other].	8.78936e-112
CP011304.1\|AKE64629.1\|2283119_2283737_-\|resolvase-like-protein	gnl\|CDD\|239738	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.	2.60057e-42
CP011304.1\|AKE64627.1\|2281486_2281615_-\|hypothetical-protein	gnl\|CDD\|379519	pfam14239, RRXRR, RRXRR protein. This domain is found in bacteria, eukaryotes and viruses, and is approximately 180 amino acids in length. It contains a conserved RRXRR motif. It is often found in association with pfam01844.	1.75888e-12
CP011304.1\|AKE64618.1\|2263718_2265905_-\|Modification-methylase-DsaV	gnl\|CDD\|365904	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase.	3.24182e-95
CP011304.1\|AKE64614.1\|2255854_2256697_+\|gamma-tocopherol-methyltransferase,-delta-tocopherol-methyltransferase	gnl\|CDD\|215135	PLN02244, PLN02244, tocopherol O-methyltransferase.	1.41513e-126
CP011304.1\|AKE64615.1\|2257549_2259403_-\|putative-peptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.33833e-49
CP011304.1\|AKE64619.1\|2265974_2270579_-\|Ferredoxin-dependent-glutamate-synthase	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0

>CP011304.1|AKE64620.1|2270879_2271737_-|Succinyl-CoA-ligase-[ADP-forming]-alpha-chain
MQGIDRPLGKYYAARLKAQGTCLVAGVASGHGGEIIAEIPVFDLVAEAVAEAGEIKTSLILVPPNQVLDAALEAIAAAITQLIIVTPGVPPLDLVELLKIASTTGTLILGPGSQGVIIPNYLWLGICEPSFYQSGTIGLITRGDRIGDEVAKTLTAAGYGESMAVNLGTDGIIGSNLSQWLQVFEEDENTEAILLVSQVGGKSEIEAAKYIASAIEKPVIAYLVGLNTAIETNFGDTETIISNQLSYSVAAKNTRKDSLRHFQEAGVTVVEKLADLPTSLAKVLS
>CP011304.1|AKE64619.1|2265974_2270579_-|Ferredoxin-dependent-glutamate-synthase
MAQQNNLKTDNIHQIDPYWGPRWLVEERDACGVGFIADVRGSGSHQLIEQALLALGCLEHRGGCSADQDSGDGSGMMTAIPRDVLAPWFAENGLNMPESERLGVGMVFLPQADRERAEAKAHIEEIVNKYNIKILGWRAVPVHPQVLGRQARENQPYVEQILVTSPDLAGSQFDRLLYIARSEVGKQLADDFYFCSFSCRTIVYKGMVRGEILREFYLDLQNPAYSSQFAIYHRRFSTNTQPKWPLAQPMRLLGHNGEINTLLGNINWMSAREPALETQGWTHEELQSLTPIVNPANSDSYNLDSALELLVRTGRSPLEAAMILVPEAYNNQPDLQDYPEIIDFYEYYSGLQEPWDGPALLVFSDGGIVGACLDRNGLRPARYSITNNGYIVVSSEAGTIPLDETTIMEKGRLGPGQMLAVDLEKGEIKRNWQIKQEIARANPYGEWVKSQRTLIDKETAIDIPAPSHLLPLQTAFGYTAEDVDMIIVPMAEQGKEPTFCMGDDTPLAVLSSKPHLLYDYFKQRFAQVTNPPIDPLRESLVMSLTMYLGRRGNILKLGVDDAHLLKLDSPLLNNAELAKVKTSSYKTAELSTLYDLTTGPGGLETAIANLCAEAAKKVESGAEILILSDRTAPIDEKTSYIPPLLAVGAVHHHLIRSHLRLKASIVIDTAQCWSTHHFACLIGYGASAVCPYLALETIAQWWIEPKTQKLMENGKLEAISLEKALINYRKSVEAGLLKILSKMGISLLSSYHGAQIFEAIGLSADLVKLAFNGTTSRVGGLSIAEVAQEAIAFHSKAFPNLTAKKLENYGFVNYRPGGEYHMNSPEMAKALHKAVAAHSQGEGYDHYETYRQILQERPVTALRDLLEFNSDRASIPLEAVESIESILQRFCTGGMSLGALGREAHETLAIAMNRIGGKSNSGEGGEDPIRYTSLSDVDAEGHSVTMPHLNGLKNGDTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVSPYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPRAKVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRMLMENQLRHRVILRADGGLKTGWDILMAAVMGAEEFGFGSISMIAEGCIMARVCHTNNCPVGVATQQERLRARFPGIPAHVVNFFTLVAEETRQLLAKLGYHSLNEVIGRADLLKVRSDARLTKTESLNLDCLLNLPDGRGDRSWLQHEEVHSNGAVLDDDILADSEIKQAIEQQGTVSKTYRIVNTDRSVGARIAGVIAQKYGNDGFEGEIKLNFQGAAGQSFGAFNLPGVNLHLEGEANDYVGKGIYGGEIVILPPQNANYQPEDNAIIGNTCLYGATGGVLYANGRAGERFAVRNSTAKAVIEGAGDHLCEYMTGGVIVVLGSVGRNVGAGMTGGLAYILDPSLPEKLNPEIVKIQRVATAAGAEQLKSLIEAHVERTNSPKGKLILANWDSYLGQFWQVVPPSEADSPEAQISAEKTLTSV
>CP011304.1|AKE64618.1|2263718_2265905_-|Modification-methylase-DsaV
MTNEKLRFIDLFAGIGGFRLAFESVGYDCVYSCEIDENCRKVYFNNFQEIPDQDIRKIAIHDLPDFEVLTAGFPCQPFSISGKRAGFRDTRGTLFFHICEIVELKKPKIILLENVKHLIHLDKGKNLDIILHSLEELGYLVDYKLLNAKDFGVPQNRERIIIIATQNKKFNFNSLKYTSPIPKLRDFLSPQGNFEYLDKKEYTLIDNPTLQPSGLIFVGYRNKTIWKKGIRPNTEHLSRVHHQPNRIYSIDGVHPTIPSQETSGRFFIYIPEQDQVRKLTIQECYRLMKFPDSFQIHPNLAESYKQVGNSVCIPMIQELAIAIKKHIFENNSRVSLKEFSFSRQNIQLEIIGLDFMNHKEKLLDIYDQSLNLDDRQPLLPQPYQNYIQQIATNCSKKKGVYTVLITLLVHKILYPNQDIRYHQTNLPGGFSGRTIDTQYITPTLKQLGLPAMAESGWLTRSLEQPFPYTLDYQGKISNQKTKDAFLGLIDFIETNPQQAEVILTLLLHQVNQIIQTQKIKILKIDNPEPFDINTLSSCLENHFSFNYQTRGASKLPVLALYAIYQRLIIEVERYKSCTLKPLGSHTASDLTSGSAGDIEIFDKNKQLVEVIEIKHGKYIDLQILRIAKDKIIKFNPRRYYILSSFDVKPTEVELIMSEIQTIKNNHGCQIITNGIIPTIKYYLRLISSPEEFVNSYSHLIEIDSELQTIHKLKWNEILSNLISPIEQI
>CP011304.1|AKE64617.1|2260012_2263477_-|adenine-specific-DNA-methyltransferase
MNPLVNYFRNLQEIHSSQAAVKETSYYGTLETLLNEIGKTLKPRVRCIINLRNQGAGLPDGGLFNVDQFPKNQELEPFTAIFPERGAIEIKGTKEDIKKIAASEQVQKYWQKYGQVLVSNYRDFLLIGRNSQGQPVELEAYSLAPSEAEFWLKTSNPSKFAAEHGDSLLEYLKRVLLQAAPITSPADVAWFLASYARDAKARLEHHSDLPALANIRQALENALGIKFEREQGNKFFRSTLVQTLFYGLFSAWVLWHKQNLNREDKEDKFDWKSAAHHLHVPMLAILFEQIAAPSKLKSLGLVEVLNWTGAALNRVRREEFFRQFDEGQAVQYFYEPFLQAFDPDLRKELGVWYTPPEIVRYMVARVDRVLREELNIEDGLANPDVYILDPCCGTGAYLVEVLRYITDTLQENGAGALAMALVKKAAIERIFGFEILTAPFVVAHLQLGLFLQSLGVPLIEDSERVGIYLTNALTGWQPPDEESKQKIQQLQLSFPELNKEREAADEVKRGKPILVILGNPPYNAFAGTSPAEEAGLVELYKQGLISDWGIKKFNLDELYVRFFRLAERCISENTGKGVVCYISNFSYLGDPSFVVMRQRFLQEFDRLWFDCLNGDSRETGKLTPEGNPDPSVFSTQYNKEGIRVGTTIGLMVRKEVRNKNVDVYFRHFWGVAKREQLLDSLNNQDFDSLYQVSNPEQSNRYSFRPSDVSSHYLAWPKLTDLSDEAPITGYKENRGYSFIDSDKTILSERISKYFDQNVSWEELASLNTGLTKDAARFDAKKARDKVLKLREKFNPQMLLPYLLRPYEVKWCYYTQIRPLWNESRPSLFIHQFQGNSFLVSRPAGVASPEGIPFYFTNCLGDFDFIRGHAYHFPIRLRQNSEKVKTEDNTQGKLFDSSNLNIPSIKANLSEKSRQYLNELGINNLDENIENASLIWLHSLAIGYSPLYLGENADGIRQDFPRIPLPNSQELLIKSAELGQVIASLLDTEKPVIGVTKKPTPALQKIALISCTDGGNLNPDKGDLIINVGWGHGGKNGVTMPGKGKAIARQYTTAEMSVISPEMRKLLGTTTYDIYLNDRAYWQNIPVRVWEYTIGGYQVIKKWLSYREEKLLGRGLTIAEVQEVSEMTRRITAIILLESDLDDNYQNIKTAVYSF
>CP011304.1|AKE64616.1|2259853_2259967_+|hypothetical-protein
MWGFTDFQVVNYLIFREKVKISPRSLQWLAFFDLKKV
>CP011304.1|AKE64615.1|2257549_2259403_-|putative-peptidase
MKETFIHNTMTSATPEQNYTAESNRVRYSVALLGLALSLGVPSILNSTSESAQAANSVPLEWELIDLSPKAKDGGKELKEPQIIPSQALATVKFIATSVVEHQVKPGESLWSLADTYQTTPTAIATRNNLSPHSDLIIGQTLKIPTPEQLPPAAPAATPEQLDSSSASLRQTRQRLQESLAALRTEETPHQSHSGETVIVTETTALVPDNSPTSVEIPVIAPEESPQPTSQVIPIPVPTPESDRPIATIPLNPPLTSRPEIPSVALRNPAPVTEIPAVPNPRVIVPPENQVYRVRPGDTLNTIARALGITPAELARENGIDNPNRIKVNQTLVVPDRSANARVNQNLTPLVGERPRLSFNPSNRQNPPAETVTTETEEFPENITGSYRERLRQEVANLRETNLSETQKSIAIPVDNPPETVEDRQITANPQWTALRSRSNQSNPPQIIGSAPTNVEEYNDRLRIPVGETVEPSLPPLANPDEHLPNPAPIFTGFIWPTRGVLTSGFGWRWGRPHRGIDIAGPVGTPVVAAAAGEVISSGWNSGGYGNLVKLRHPDGSVTLYAHNSRLLVRRGQTVEQGEPIAQMGSTGFSTGPHLHFEVHPSGQGAVNPMAFLPGRR
>CP011304.1|AKE64614.1|2255854_2256697_+|gamma-tocopherol-methyltransferase,-delta-tocopherol-methyltransferase
MELYQRIADFYDSSSGLWERIWGEHMHHGYYGRGGKIKLDRRQAQIDLIEELLTWGAVTGANQILDVGCGIGGSSLYLAEKFHSQAVGITLSPVQAARASQRAQEFNLEEQVSFCVADALKTPFPDDNFDLVWSLESGEHMPDKRQFLRECYRVLQPGGTFLMATWCHRPTTSLAGNLTEGEIKLLNEIYQVYCLPYVISLPEYADIAREVGFRDLKTDDWSLSVAAFWDVVIDSALTTDAIAGLLASGYTTIQGALSLGLMRRGYESGLIRFGLLQGKK
>CP011304.1|AKE64613.1|2254434_2255646_-|2-octaprenyl-6-methoxyphenol-hydroxylase
MLGRDSYDLIIVGGGIVGTTLAVALKNTGLNIAMIEERPLEVAASRRQAYALSLMSSRIFTGLGIWDKISPSIGKFRHIRLSDADYPIFVPFVVDELKTDYLGYVGEHQVILTALHKASQDCDRIDWLSPAKVLEVEYGAETATVTLEEAGQTRKITTKLVIGADGARSAIRQGAQIKTKGWKYWQSCVAFTIKHQLDRNDTAFERFWPTGPMGILPLQGNRCQIVWTNPHGEAKKLQEMPEGEFLDKLEAYTGGLLGKLELVSSRALFPVQLMQSDTYVKPRLALIGDAAHCCHPVGGQGLNLGIRDAAALAQVLKEAVEKQEDIGALSTLKSYEKWRRSENLAILGFTDFLDRLFSNNWPPIVVIRRLGLAMMRGFPPLKLFALQLMTGLKGRIPQLARTC
>CP011304.1|AKE64612.1|2254154_2254286_+|hypothetical-protein
MQAFFFFLSPPSPELVAGYLARVCGKKLFVGTGCGVWGVGCGV
>CP011304.1|AKE64611.1|2251987_2253910_-|prolyl-oligopeptidase-family-protein
MSHQISAYGSWKSPITSDLIVAASISLGGVTLDGEDIYWLEGRPQEKGRNVLVKLNPDGTTTEITPAPFNVRTRVHEYGGGSYLIVAGIIYFCNFADQRIYRQTAESLPQPLTPENSCRYADLILDEFRNRLICVCEDHSQKDREPVNSIVSIDVDTGEIETLVSGDDFYTSPRLTADGSRLAWISWNHPNMPWDSSFLWVADINNLYLSNIRVIAGGENESVCEPRWSADQQLYFTSDRNDFWNFYCFKYDEQIEQVLEPIEAEFAYPHWVFGLSNYGFAGESQIICSYTKNGRWYLGSIDTVNREFREIITADTNISSLQVSDNKIVFIGGSFREVTAVVSMDLATGTREILKSSSNLTISSDYFSIPEMLAFPTSQGLTAYAWYYPPKNPDYTAPNGELPPLLVKSHGGPTAAATSSLSLRVQYWTSRGFGYLDVNYGGSTGYGRQYRQRLQGNWGIVDVEDCINGAKYLVNQGLVDGERLAISGGSAGGYTTLAALTFHDTFKAGASYYGVSDLEVLATDTHKFESRYLDKLVGRYPEEKEIYYQRSPIHFTAQLSCPVIFFQGLEDRVVPPNQAEMMVEALKAKGLPVAYVPFAGEQHGFRQAESIKRALDAEFYFYSRLFGFTPADNLEPVEIK
>CP011304.1|AKE64621.1|2273091_2273955_-|Cyanophycinase
MESTKERGQLIIIGGAEDKEGDCQILREFVRCAGGTKAKIAVLTAATSEPRSAGEAYTRVFERLGVEDVRVLDTIHREDADDPENLKIIEEATGAFFTGGDQALIIEHIKGTQLDTLLHQRNREGMVVGGTSAGAAIMPDLMIIEGDSETNPRMDAIDMGPGMGFLHSVVIDQHFAQRGRLGRLISALLQQPANLGFGIDEDTAVIVDGDEFKVVGRGAITVVDESEATYDNLDELLKDEAMAVCGVRLHILPQGFRFNLKTRKPVFSRSIELKDSNPKKEAEVERE
>CP011304.1|AKE64622.1|2274314_2274794_-|hypothetical-protein
MMSLQQIRRFFVTIILTIMLAITIAFDFGTTNSWAATLPTQPQTQIASMNRAKAVTKNIEGKAQEAIGNMTGDPKDQMMGKAKQVESQARNAAEDIKDQMKLKGRAKAVTKNIEGKAQEAIGKATGNRQDQVAGKAKQVESQVRNAVEDVKDQVQDILN
>CP011304.1|AKE64623.1|2275083_2275266_-|hypothetical-protein
MSLKDRTEATAKNIEGKVQEAVGDLTGDPKAQAEGKEKQAEAKVRHTIEDVKDEVKKIID
>CP011304.1|AKE64624.1|2275437_2276109_-|sterol-desaturase-family-protein
MSQSFVNHNLRHWSPSWRSIQQDITLSVLSAGVFALAAAFIITGYSWGITRLYSHPQQYGLCYLGVSYGAVLVLQDAYFYFTHRLFHHPSLFRWLHQGHHRSRYPTPWTSFAFDPLEAIVQSLFLVGIVFVLPLHFITLIAALTTMTIWAVLNHLGIDRLPSSFPHHWLGRWFIGPAHHSIHHRKYTVHYGLYFTFWDKLLGTQDPDYEQKFDERLTGKVDGV
>CP011304.1|AKE64625.1|2276215_2278525_-|hypothetical-protein
MVKRSLQASPSGIKQAKRAFALKGWTQENLAGEVNLKTRQPIWRFFTGKPVDRQVFLEICSILDLDWREIALAPPAEFPEPGELAKTNIDALVQEVRAQRLDTIQNQCGILQLLDISHPVSIDDIYVDVNILAEIASQQWVEIADWQNLGPAEFDRVGLGEVEQKQIPGMQAVETYSKLRVLGRPGVGKTTFLQHLAIQCNQGEFAANQVPIFILLREFAEESSPRGEFSLFNYIRQALLTSGISNPSVLETLLQAGRVLLLLDGMDEVLNQDITAVLREIRQFSEKYHRNRFVVTCRTAAQKLQIRGFTDVEIAPFTQAQISTFAQKWFVALSKTTAQAGQEQSAQFMEKLDLPENWQFRQLVVTPLFLHLACWVFQGQGKFPSKRAEFYKQGLDLLLGKWDEARGVERDQVYRGFLLPQKLKLLSQLAAVTFEQGQYFFEQRTIEQYIGDYLRNLPGATLEAEELQLESEAMLKAIEAQHGILTERARGIFSFSYLAFQEYFTARKIVASHNLQALEQALGGLVSHITDSHWREVFLLTAAMLRSADALVQLMKQQIDALVAQDSYLQEFLSWASQKSQQLPDETKVATARAFYLALAQSPHTADRFALASTLDQGMFLDAALENLLVEFAIDHSQDFAYVNACSEALNNILVMVLDAGFYKSLQQLRDQLPPPSQNLERLQHWWQKNYSAWVEQLRGAIANYRNIHHPWQFTTEQQQLLQRYYEANQLLIDCLNSNCEITAAIRQEIEATLLLPQKDLEDREWQGD
>CP011304.1|AKE64626.1|2278554_2280123_-|Hopanoid-2-methyltransferase
MKALLLYPEFPQSFWSYDRFMEIAGLKATIPPLGIITVAALLPQNWEIRFYDRNVNPETEADWEWCELVILSAMLVQKPDFQALIQKAVQLGKKVAVGGPYPTSVPQDALDSGANYLILDEGELTVPLFLEAIAQGQSQGIFRSGDKPDVTLSPIPRFDLLQRDDYLMMAVQFSRGCPFNCEFCDIISLYGRKPRTKEPSQTLAELQTLYDLGWRGSLFIVDDNFIGNQRNVKRFLRDLIPWMKQHDYPFTFITEASVNLAEDDELLSLMAEAGFYSVFLGIETPDQDSLQVTRKLQNTRNPLVEACRKINAAGLLIYAGFILGFDGERSGAGERIQAFVEETSIPQPMLGILQSLPNTALWHRLQQEQRLVEGDSIHPTGDQNSLMNFIPTRPIAEIAREYVEGFWTLYEPSHYLRRCFQQCLGLGLQSKHKQTMQFPVGKGLRLITQLIWHQGIRRGNIRGQFWRQLWTIWQKKPQVLNLYLGLCAAGEHFWEYRALARERITQQLGYDPLEVSGRPNQN
>CP011304.1|AKE64627.1|2281486_2281615_-|hypothetical-protein
MARVPVISKDGKPLMPTKPSRARRWIKEGKAIGKFNDLDRAG
>CP011304.1|AKE64628.1|2281909_2283148_-|Mobile-element-protein
MKLVQKHLIKFNHKNYSVIDKLGFLSKNLYNCAVYLNRQVFFSHQPFLTMTELHHALKMSPDYQALPAKVSQLVLKQVEKTFKSYQKAKEQYKKSPDKFTGEPKLPRYKDKEKGRNVLTYNYQAISKKALKQGLIKLSGTNLEFKTNLKEVLEVRIIPKLGAYCLEIVYEQPSSSSQEGERYAFIDLGLNNLAAVTSNIPEFQPTLVCGKALKSCNQKYNKTLAKLKSELPSLQKTSKRIQGLTLKRNCKVDYYLHTASKYIIDKLLAHQINLLVIGHNQGWKQNINIGDRNNQSFVNIPHSRLIEQLTYKANLVGIEVKTTNESYTSKCSFLDLESIQKQKSYLGKRIKRGLFRSSSGYFYGADINGSLNIGRKVVGEAAFSGNPIERFVVNPVRVKAYKANSRCNICVQN
>CP011304.1|AKE64629.1|2283119_2283737_-|resolvase-like-protein
MQVYIAVHIKLSDYAKKKGISYDTAWRMWNRGQLQGERLPTGTIIIFEDDRSCGENKVAIYARVSSSENQSNLETQAKRLEAYCIAKGYQIVRVVKEVGSGVNDHRKLLLKLLEQTDYNLIVVEHKDRLSRVGFNYLKVLLNQTNRDIEVVNLAEERKDDLMEDFVSIITSFCARLYSLRRRNRKTECLIKCLEENDEISSKTSN
>CP011304.1|AKE64630.1|2283813_2284662_-|transglutaminase-domain-protein
MLKYELGCELTYSIEQASTLILNVAIVSNNHQIIVQEDLHSNSQRSIEEYITSVSGNRYFRLNAPPGNLQISYRATVGLSPYYSDPSTIFEVKPADLPLDILYYLYPSRYCQSDRLLRFVAAEFGHLVPGYSRVTAICNWIYDNVLYLSGSSDSLTSACDTAIERVGVCRDFAHLGIAFCRALNIPARFVSGYAYGLNPPDFHAWFEAYLGGRWYLFDPTRLVPQSGLIRVGTGRDAADVSFATIFGQVQMNQMRLFMDYLPDAKPISENILIPTTEAIAIS

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Crispr_ID: CP011304_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_15

2769449-2769687

TypeIII

Consensus_repeat	Method
AGAAATTAATTGACTGGAAACA	PILER-CR

3 spacers

cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas14j

The CRISPR arrays of CP011304_15

>merge|CP011304|15|2769449-2769687|PILER-CR
AGAAATTAATTGACTGGAAACAAAAGGGTTCTCCCTCTTTCAAGTTTTCAACTGCCTGACTCTCTACTCAGTGGAGAAATTAATTGACTGGAAACAAAAGGGTTCTCCCTCTTTCAAGTTTTCAACTGCCTGACTCTCTACTCGCGCTTAGAAATTAATTGACTGGAAACATTTGTAGGGTTAATTCATGAATTAACCCTACTCTCCACTCGCGCTTAGAAATTAATTGACTGGAAACC

>CP011304|15|2|2769449-2769687|PILER-CR
AGAAATTAATTGACTGGAAACA	AAAGGGTTCTCCCTCTTTCAAGTTTTCAACTGCCTGACTCTCTACTCAGTGG
AGAAATTAATTGACTGGAAACA	AAAGGGTTCTCCCTCTTTCAAGTTTTCAACTGCCTGACTCTCTACTCGCGCTT
AGAAATTAATTGACTGGAAACA	TTTGTAGGGTTAATTCATGAATTAACCCTACTCTCCACTCGCGCTT
AGAAATTAATTGACTGGAAACC

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE65139.1\|2764708_2765836_-\|CRISPR-associated-RAMP-Cmr3	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
CP011304.1\|AKE65140.1\|2765808_2768823_-\|CRISPR-associated-RAMP-Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|378863
CP011304.1\|AKE65150.1\|2778988_2780089_-\|Prophage-Lp2-protein-6	unknown	unknown	gnl\|CDD\|227091
CP011304.1\|AKE65134.1\|2759750_2760203_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65133.1\|2758674_2759517_-\|putative-alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP011304.1\|AKE65136.1\|2760765_2762709_-\|CRISPR-associated-RAMP-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|187792
CP011304.1\|AKE65144.1\|2773104_2773437_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65148.1\|2776769_2777114_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65135.1\|2760395_2760668_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377648
CP011304.1\|AKE65147.1\|2775267_2776701_-\|Phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|100093
CP011304.1\|AKE65138.1\|2763494_2764274_-\|CRISPR-associated-RAMP-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
CP011304.1\|AKE65132.1\|2757880_2758189_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65149.1\|2777487_2778321_+\|Photosystem-II-manganese-stabilizing-protein-(PsbO)	unknown	unknown	gnl\|CDD\|366770
CP011304.1\|AKE65143.1\|2771487_2772747_+\|Mobile-element-protein	cas14j	-	gnl\|CDD\|223747
CP011304.1\|AKE65145.1\|2773609_2774035_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226278
CP011304.1\|AKE65142.1\|2771005_2771311_-\|transposase	unknown	unknown	gnl\|CDD\|376616
CP011304.1\|AKE65141.1\|2769721_2770339_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131644
CP011304.1\|AKE65137.1\|2762772_2763129_-\|hypothetical-protein	cmr5gr11	cls000022_cmr5gr11_CAS-III-B	unknown
CP011304.1\|AKE65146.1\|2774247_2775225_+\|O-demethylpuromycin-O-methyltransferase	unknown	unknown	gnl\|CDD\|366359
CP011304.1\|AKE65131.1\|2757694_2757856_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE65139.1\|2764708_2765836_-\|CRISPR-associated-RAMP-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	7.39137e-63
CP011304.1\|AKE65140.1\|2765808_2768823_-\|CRISPR-associated-RAMP-Cmr2	gnl\|CDD\|378863	pfam12469, DUF3692, CRISPR-associated protein. This domain family is found in bacteria and archaea, and is typically between 101 and 138 amino acids in length. The proteins in this family are frequently annotated as CRISPR-associated proteins however there is little accompanying literature to confirm this.	1.56898e-43
CP011304.1\|AKE65150.1\|2778988_2780089_-\|Prophage-Lp2-protein-6	gnl\|CDD\|227091	COG4748, COG4748, Uncharacterized conserved protein [Function unknown].	4.51961e-119
CP011304.1\|AKE65133.1\|2758674_2759517_-\|putative-alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.14862e-32
CP011304.1\|AKE65136.1\|2760765_2762709_-\|CRISPR-associated-RAMP-Cmr6	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	4.44587e-20
CP011304.1\|AKE65142.1\|2771005_2771311_-\|transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.39859e-32
CP011304.1\|AKE65135.1\|2760395_2760668_+\|hypothetical-protein	gnl\|CDD\|377648	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain. This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.	0.000895653
CP011304.1\|AKE65138.1\|2763494_2764274_-\|CRISPR-associated-RAMP-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	5.34183e-32
CP011304.1\|AKE65149.1\|2777487_2778321_+\|Photosystem-II-manganese-stabilizing-protein-(PsbO)	gnl\|CDD\|366770	pfam01716, MSP, Manganese-stabilizing protein / photosystem II polypeptide. This family consists of the 33 KDa photosystem II polypeptide from the oxygen evolving complex (OEC) of plants and cyanobacteria. The protein is also known as the manganese-stabilizing protein as it is associated with the manganese complex of the OEC and may provide the ligands for the complex.	5.67742e-155
CP011304.1\|AKE65147.1\|2775267_2776701_-\|Phosphoglucosamine-mutase	gnl\|CDD\|100093	cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.	0
CP011304.1\|AKE65145.1\|2773609_2774035_-\|hypothetical-protein	gnl\|CDD\|226278	COG3755, COG3755, Uncharacterized protein conserved in bacteria [Function unknown].	1.72055e-30
CP011304.1\|AKE65143.1\|2771487_2772747_+\|Mobile-element-protein	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.42264e-29
CP011304.1\|AKE65146.1\|2774247_2775225_+\|O-demethylpuromycin-O-methyltransferase	gnl\|CDD\|366359	pfam00891, Methyltransf_2, O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.	9.85735e-52
CP011304.1\|AKE65141.1\|2769721_2770339_-\|hypothetical-protein	gnl\|CDD\|131644	TIGR02595, conserved_hypothetical_protein, PEP-CTERM protein-sorting domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms. [Cell envelope, Surface structures].	0.00477831

>CP011304.1|AKE65140.1|2765808_2768823_-|CRISPR-associated-RAMP-Cmr2
MALGYWQAKIWGLLQAPVLKALHSNSGRSGDSFWRDLEVMKLWGKHNSEESTKKILKRIKLADYITSASDRAAISSLTQFVNYDQQTGLELRHLLSGEPLALKLANTTHKKIASNRTDYLKKQETRLFNQIPARLRTGISENEAKELFWWLWRCLPQAATKLLDDENLLLMPAETRIPDGSIWSHASVTAAIAGSLAGYDLTPEDVVNKWPTGKQLSHPYLVSFSFSPVQELIKASRKMGDFWAGSWILHYLSAKVCWQLAQQYGPDSLIYPSLYAQPLIDQWLLEKYSDFSSWIDPPGDQQLLTAGFPNVIILILPKDKVAAAMQTAKSRLLKEWKEISRQVFEKLQLKENSRTWDSWLNAQWQTYYVGVPIGREDQTLTSGEIYQENENIAENQAEDPEKAQSWRDKQNELYNLYDKKALFLEKEREFLQKAGELAHQKWKRPPFSSNVGSWWSSAFEQNLSALAAVKNARDWQIPTAFGPRSTISGLGPVVHPDGNNDWISEKASKEYWQRNAGLFNGIEQLNATETVKRGLHLILPKLLKNSDQKRLDAAYPDLTVGVAGYLKTGGDLDYFHRVCRTISRRLREDGKKIPTALTQPWGIPYIDNHIEPEYKRYHPRFLNAGWLVEELEIPDEEMANYRHQLSQLIDQNYPHNNPADWYVIAAGDGDGMGEWLKGQKMKPYRDYIPKSLHQYADHPPTETDTLEKEVQKAFGDFVTLDKRIGPSTHHALSRALLDFSNQLVPYLTEQRYAGRLIYGGGDDVLAYTNLWEWDKWLWDIRQCFKGEKDPHGEFNNAGDYWQWKGEKPAENLAKRPLFTMGKRATISFGMVIAHHSVPLAIALENLWEAEKKAKEHTYKGFDGKKVKKDAVQVRVLYGNGNGLESTAKFDVFPLWQKLLASNSDASLFEAVAGLWQQHPAPMIEAIEVWVKAFSSRQENLTTDNREFPEDLSNFLKHLWLTTENDANNLKEAVDSWMKLAAFMTRKREIKIGGSLLCIGTQSLP
>CP011304.1|AKE65139.1|2764708_2765836_-|CRISPR-associated-RAMP-Cmr3
MYWYTITPLDVLLLRDAKPFSSKETAWAGSTFPPNSYTIAGALSSLLNRSKNSYFKITGPFLSFAGDTLYLPRPLGFANSDPLIPISWSDNLAISENHIFWDPLKPAPLAKANPRKNCQNRENEGQEENESKYRQYLPFEVILDYLKTGAIDPSQWLVKHEGEDKPWREEIRYHNAMQPGSKRLKDADGYFVEKAIRMLPGWSIAIGIDVNIPTPTTLRLGGEGHRVMLEKCDDLGQQWEQLKQQSRKNFQAEGKAIAYLATPGIFERRHDNNQAICRSWPWEWKLAHTVNSNQKAGHLVSVATDRAIPISCRIQSKENTSIPAPQVFAAPPGSQYYLNQPDRLFQDQPDSPEYHQRWRKLGYSELLWINYKENS
>CP011304.1|AKE65138.1|2763494_2764274_-|CRISPR-associated-RAMP-Cmr4
MNLIHFYLLSPLHTGGTTQEGNLVGIARESHTTLPYIPSSTIRGKIRSLATEETLKFKLFGNEIDQGAENLVQGDIWIGDGSILWLPVSSLSHGVVWITSPLLLRRWTRLTNTRLTIPPEYSCSFTKPNTNIYLKDAILKDNDLKDWSTWTSFIPQNSVSSGINKVLVLPDQHCTTLIQMSLWRQVKIKLDEHKSVDGGFRYEEAIPPDTLMYFPWGITSQANGTGQQSQADFKRLLADNEIIQIGGQESLGRGFVQQL
>CP011304.1|AKE65137.1|2762772_2763129_-|hypothetical-protein
MFNALQELYLNTGDDSRRKEQKKQALELYTYLSTWGMMRLKAEETALNQEGKKEVVAKYFQCLEELSQRNHLSNSQGLTTLKDLSTDDYLGLTGLGLEIAQEFSFWANAIYSDVESGD
>CP011304.1|AKE65136.1|2760765_2762709_-|CRISPR-associated-RAMP-Cmr6
MSHSPLPRPNRPQKPILKNPAIQQQNNHQPPKKPPSGGGGNNNPPQPSPWLNAEKEPQPDQSASFVEYLRWMRAADHDYKDATKVQILQTAQENANYTQRLDQLNQRTQLLAKDGITFQVKSTWRIRVSGHRGPESILLPAFDALGMPYIPSSTLRGVARNQAIREIMAENNLEWKEAVEKTTLYFGDINAKEKKNKTGKVIFFDAYPLPTKNGGLEVDMANNIWSWKDDSTQYSPNPNPFLSLKEPTFLIGLRLASNCGDEKILEQVKQWLKKGLQLGIGSQVNSGYGQLKQIDDTSHPDNNKNSHDSGFYRLDFELEGQLIHGYQRFTQWQWNERRNEWQMRSAPVAEVRPTAFKSMLRYWFRVLASGVLPINEVQNIETELFGGINPKKYGYLQVNILDGKVSQKEPRTNAQGKNDPCGEQQGTLVLSLSSETPKDKEEAVKKLAKHLTWFLADMGGIGQGARRPSYSRKSREHAPWFRGSTLYIDSEEDFWAIPNDLQGFKQQFQQRLRDFYGILDNISETNINTNNLRTVDQVSQNQWIDAADSNCQIFVCAGNEQRGKPHALAILHSDTLKITSKNGQREYDGNLCGKVSGGAKPSPVWIADLGDYQIVTVFGATAAPRKNFVSELKAKTISQNFAQIFPL
>CP011304.1|AKE65135.1|2760395_2760668_+|hypothetical-protein
MNTITNFLASAIVGGWIMTMAVFAIQNIQPVSLKFLQFESIKLPIGILLAFSLAMGFFIAAVIPAFLRKSKKSPRSRFSPPESGLDEFDF
>CP011304.1|AKE65134.1|2759750_2760203_+|hypothetical-protein
MKCDRFLTFSLVLSLGLAFPPSLPAQNPPATTFQPGPWQPVARVNISRPVEIKIINQTDIDLNYDLSANIDSSPQLLSPGTETTLRGLVIPAYILINRANAAADRYSSSLIYAVEVNDDNLVTITVTKVPGSTPGYTTFNINQQGAIYIY
>CP011304.1|AKE65133.1|2758674_2759517_-|putative-alpha/beta-hydrolase
MPTIDISGVSHSYELFSPRADKPVLVFIHGWLLSRHYWQPLVDILSPDYPCLVYDLRGFGDSQKITSNSPPSSYNLESYSQDVITLLNRLNLDAAWLVGHSLGGSVALWAADICPERIKGVICMNAGGGIYLKEEFERFREAGRQILQRRPPWLPSVPLIDVLFSRMMVKQTLSKKWGKQRVIDFVRADYQAALGSLLETTTISEVHLLPQIVSRLPQPVYFLAGKEDTIMEVKYVNHLASFHPLFETGGNVIELSGCGHFAMLEQTAAVAEKMMAILSR
>CP011304.1|AKE65132.1|2757880_2758189_-|hypothetical-protein
MLHRKIYQFCMDGQEVCIFLRDQQRWIDNARIVDLESDLVTIRYETEEEDEISSWEEMVRLESIGAVSRKLASVSRTNPDINVSEDCPEAEQLYPHSPDSLD
>CP011304.1|AKE65131.1|2757694_2757856_+|hypothetical-protein
MEVGTRIHFAPPAYNRENPAALTIILEQVVILSGSLPFHSLKVPWPLFKPRDF
>CP011304.1|AKE65141.1|2769721_2770339_-|hypothetical-protein
MNILNIAKLATFGLGVTLVPLALTINNSAQAAVFTFNGGDNALSSITKTVDGITLTISNNQPRGSFFADGDGVAVLGGPSSPGQVTTSFNLTFSSAVQLTSYNIGFIEGLEGDESFTLSNGSSSSVETSPFSTGSRNFNNQFTVAAGQTVSFSVIFGTGDINDLIQWSELKVTPASNPTTTPEPSTILGLLAVGSLGALSRKLQG
>CP011304.1|AKE65142.1|2771005_2771311_-|transposase
MSTLTKWESTLLDFNGESDHVHRIIDYKPDIALSKLIANLKTVSSRLIRKEFPDLAAKYFYNKPYFWTGAYFVASCGDITIEQLKKYVENQNSPKVETLPR
>CP011304.1|AKE65143.1|2771487_2772747_+|Mobile-element-protein
MITLTYQYKLKVNRQQEREIIHILDVCKSVYNYALSERKDWLNSRKCLADHCSLVSEYIIPADQPYPNYFVQAKNLTEAKKIYPILKTVNAQVLQQVLKTLDKAFNQMKSKSFGFPRFKKKMRSFVFPALSKNFLGDEYLNFPQLGKIRIRKSREYPSGFEPKQARIIQKASGFYVSVSFQSTELVPDMTVGKTCLGIDAGIESFVATSRGDLIKDPRFLLKVQSKLKLLQGRLKRKTKGSSNWLKLQEKIARLHEKVSNTRRDWHFKLSHYLCDLADNIFVEDINFVSWSRGIVRKQSLDSAIGSFINEILPFVIWKRGKYYLKVDKNGTSQDCPNCGAFTGKKSLSERVHRCDSCGNIEPRDTASAKVIENRGKNAVGLTVLENARGGDLTGIDRLNQVDLVKSLRTENPPLHRASG
>CP011304.1|AKE65144.1|2773104_2773437_+|hypothetical-protein
MGLTVAGLVIPSVLGSTSKVLAEDITFTLENKTRVNMTEFYASPSGVKSWENDILGDDVLGSGEQVEININDERTTCNYDFQAKFADGDVVEKYNINICELAGGSYEFYD
>CP011304.1|AKE65145.1|2773609_2774035_-|hypothetical-protein
MGKFLLTVLSIASLFTVGMATRSIAGPTSGARDRQLAQRPNCNNPQTQSEMNICASIAYQNADRKLNQVYQQLLPKLSAAHKQKLISAQQAWIKFRDSSCEFERSAFEGGSMAPMVYGFCLADVTEQRTKDLQRYLEDSDR
>CP011304.1|AKE65146.1|2774247_2775225_+|O-demethylpuromycin-O-methyltransferase
MVSGYWLSQAIYAAAKLSLAEHLSKGAKSCQELASLTETNPAALYRLMRALASVGIFQETESQQFILTPLAEHLSSDHPRSVKATAIMLGEAPHYQAWGNVLHSIKTGQPSFDDVFGMGVFEYFQTHPLDAEIFEQSMNSFSLSEEKAILAVYDFSEFQTLVDVGGGYGEMLGTILEQYPQLKGILFDEEYVISHCQPTLEKHGIVDRCQTVGGSFFESVPSGGDGYLLKHIIHDWDDRRAIAILKNCCQVLDSNGKVLVLEMVVPAGNNPSAAKMLDLNMLVMCPGGKERTAEEFEELLSQAGLKLNRIIPTQEDICIIECVKK
>CP011304.1|AKE65147.1|2775267_2776701_-|Phosphoglucosamine-mutase
MTTVNPIKFGTDGWRGIIAADFTFDRVALLAPLAARVLADNYGQITGSRTIIVGYDRRFMAEDFAQTAAESLQKAGFDVLLSQSYAPTPAFSWAARSENALGAIVLTASHNPAKYLGLKVKGYFGGSVSPEITQQIEALLSNPPQFNAAAGKLSTFEPWSGYCQGLRQKVNIAAIAEAIESGQLKVYSDVMHGAAATGLERLLGVGITELRGNRDPLFGGGSPEPLPRNLTEIIDKLAHSANLAPLRVGLVFDGDSDRVAAIDGRGNFLSTQNLIPILIEHLAGKKGMRGEIVKTVSGSDLIPKLASLYGLSVFETPIGYKYIADRMLTTPVLIGGEESGGVGYGSHIPERDALLSALYVLEAVVESGQDLSDLYAQLQDKTGFYSQYDRIDLPLANMEARHQLITALDQEPLREIAGKQVTDCNPIDGYKFRLEDGSWLLIRFSGTEPVLRLYCESSTLDRVHEILAWAKSWATYI
>CP011304.1|AKE65148.1|2776769_2777114_-|hypothetical-protein
MNSALPGDNSQLDGQLHSLVTTVTAIAEEHQQDCNGLLMLLRTLENLHRQIREQMFEPSLPNTRKDLYGLLRDIEETGGWPYIERMKLQMLMEKLLASEVGALDPAAKTDDREK
>CP011304.1|AKE65149.1|2777487_2778321_+|Photosystem-II-manganese-stabilizing-protein-(PsbO)
MRFRALLVAFLALCLGVLTACSDAPSAVLNRNELTYDEILNTGLANKCPQISEFTRGTLPLEPGESYVVTDLCLEPQEYFVKGEPVNKREAATFIPGKLLTRDTTSLEQMTASLTVGEDGVLTLKEEDGIDFQPITVQLPGGERVPLFFTIKGFTGKTEAGFSSINSSTDFVGDFKVPSYRGAGFLDPKGRGVVTGYDNAVALPASADSQDFQRANVKATELGKGTMSLQVTKVDASTGEFAGVFESEQPSDTDLGAKDAEEVKIRGIFYGRLEARA
>CP011304.1|AKE65150.1|2778988_2780089_-|Prophage-Lp2-protein-6
MEIDKLKEIAQKVETSRSQIQNEQATKTAFIMPFLQAWGYDVFNPMEVHPEYSADLTGLKGEKVDYAICLDNQPIILMECKSCHQNLEHPKHSSQLHRYFNATGANFGVLTNGIIYRFYTDTVKDNIMDDKPFFEFNILDFDESSVNELKRFSKSSTSTSDFNSGKIKEAARNLLYTKEVKKVIAQQLNDPSPDFVKFFVSHVYSGVRTASVVEKFTEIIKRSLKEYINDIIKEKFEEVFRKEPEPNPADAAADTPPEETGGDGINTTLEELEGFYIIKSILREEINTARIQFKDTRSYFGINLDGKVTKTVCRLRFNERTGKKSISIPDNVETGKEATTNINSLDEIYGVAEFLKSRIRYLTKDT

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Crispr_ID: CP011304_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_16

2929111-2929207

Orphan

Consensus_repeat	Method
TATCTATAGAACTAGAAAAGTTTACCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP011304_16

>merge|CP011304|16|2929111-2929207|CRISPRCasFinder
TATCTATAGAACTAGAAAAGTTTACCAAACAGCGGGCGTTGGGTTTCCTTGCGTCAACCCAACCTACCTTATCTATAGAACTAGAAAAGTTCACCAA

>CP011304|16|15|2929111-2929207|CRISPRCasFinder
TATCTATAGAACTAGAAAAGTTTACCAA	ACAGCGGGCGTTGGGTTTCCTTGCGTCAACCCAACCTACCT
TATCTATAGAACTAGAAAAGTTCACCAA

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE65297.1\|2925103_2926285_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65303.1\|2931069_2931210_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65310.1\|2937303_2937579_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227751
CP011304.1\|AKE65306.1\|2932811_2933048_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224514
CP011304.1\|AKE65296.1\|2924080_2924584_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65295.1\|2923475_2923790_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65304.1\|2931513_2931750_-\|NifU-like-protein	unknown	unknown	gnl\|CDD\|376458
CP011304.1\|AKE65307.1\|2933316_2935182_+\|serine/threonine-kinase	unknown	unknown	gnl\|CDD\|224182
CP011304.1\|AKE65300.1\|2928188_2929070_-\|peptidase-S1-and-S6,-chymotrypsin/Hap	unknown	unknown	gnl\|CDD\|379142
CP011304.1\|AKE65299.1\|2926954_2928145_-\|Tetratricopeptide-TPR_2-repeat-protein	unknown	unknown	gnl\|CDD\|379142
CP011304.1\|AKE65291.1\|2922168_2922330_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65293.1\|2922797_2923193_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
CP011304.1\|AKE65294.1\|2923211_2923325_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65302.1\|2929984_2931073_-\|Isocitrate-dehydrogenase-[NAD]	unknown	unknown	gnl\|CDD\|333905
CP011304.1\|AKE65308.1\|2935409_2935646_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380307
CP011304.1\|AKE65292.1\|2922613_2922754_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65309.1\|2935642_2936701_+\|hypothetical-protein	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
CP011304.1\|AKE65311.1\|2937694_2938207_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366774
CP011304.1\|AKE65298.1\|2926333_2926933_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65305.1\|2931823_2932471_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371771

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE65311.1\|2937694_2938207_-\|hypothetical-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	4.47871e-50
CP011304.1\|AKE65306.1\|2932811_2933048_+\|hypothetical-protein	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.14273e-06
CP011304.1\|AKE65299.1\|2926954_2928145_-\|Tetratricopeptide-TPR_2-repeat-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	4.73929e-20
CP011304.1\|AKE65304.1\|2931513_2931750_-\|NifU-like-protein	gnl\|CDD\|376458	pfam01106, NifU, NifU-like domain. This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.	6.54207e-35
CP011304.1\|AKE65307.1\|2933316_2935182_+\|serine/threonine-kinase	gnl\|CDD\|224182	COG1262, COG1262, Uncharacterized conserved protein [Function unknown].	7.81322e-78
CP011304.1\|AKE65300.1\|2928188_2929070_-\|peptidase-S1-and-S6,-chymotrypsin/Hap	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	1.49716e-21
CP011304.1\|AKE65310.1\|2937303_2937579_-\|hypothetical-protein	gnl\|CDD\|227751	COG5464, COG5464, Uncharacterized conserved protein [Function unknown].	6.45708e-17
CP011304.1\|AKE65308.1\|2935409_2935646_+\|hypothetical-protein	gnl\|CDD\|380307	NF033474, DivGenRetAVD, diversity-generating retroelement protein Avd. Avd (accessory variability determinant) is part of diversity-generating retroelement (GDR) system through which a portion of a protein-coding gene can be rewritten, creating diversity that can affect host range. The founding member of this family, bAvd, from a Bordetella bacteriophage, belongs to a retrohoming element called BPP-1. Members of this family are four-helix bundle proteins, related to those of family TIGR02436, some of whose members are found in long intervening sequence (IVS) regions in 23S rRNA.	2.26813e-22
CP011304.1\|AKE65305.1\|2931823_2932471_-\|hypothetical-protein	gnl\|CDD\|371771	pfam11866, DUF3386, Protein of unknown function (DUF3386). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 220 amino acids in length.	1.89831e-123
CP011304.1\|AKE65302.1\|2929984_2931073_-\|Isocitrate-dehydrogenase-[NAD]	gnl\|CDD\|333905	pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase.	1.56602e-45
CP011304.1\|AKE65309.1\|2935642_2936701_+\|hypothetical-protein	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	1.1203e-33
CP011304.1\|AKE65293.1\|2922797_2923193_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.000227514

>CP011304.1|AKE65300.1|2928188_2929070_-|peptidase-S1-and-S6,-chymotrypsin/Hap
MAGVGGLLLGLSTPLLAVPSYAPALEPNRANAYSSQQLSEQQLLQLARAITVKVLSGQGWGSGILVEKQGSSYKVLTNDHVLGRYRSRVWQIQTPDGKIHRGELVRTVRLNNYDLGLVSFRSSQVYSIADLANVDDLTIGDEVFAAGYPFDFTFTVGKVSLLSDKSFSGGYQIGYTNKIKNGMSGGPLLNRQGKVIGINGIHAYPLWGKSYVFADGTVTSPALWEQMSRLSWAIPIGTFLKSGSSSPSASSRQRPAVSPPSLPTHREPTFSEDFPSPSSSTPREKNPAPTPLW
>CP011304.1|AKE65299.1|2926954_2928145_-|Tetratricopeptide-TPR_2-repeat-protein
MKISAALVSIAVFVVSPQIAKASTTEQIEKTAEKITVLIPSEEEGANGKITANGSGSIIAKEGRVYTVLTASHVICKDARDACKFYYDQLKIITWDGKQYPLDYNSIKKLPGVDLALVQFQSDQNYQLATLGNYQVADEQFIFASGWPDPKFIGKRKRLFNVGKVLPKDITPLLKIFPPELGYEIVYTSVTYGGMSGGPVLDINGRVIAVHGQNEAEKIEKVPVPIGFSLAIPITTFLKLAPQSGIQGQINVESSPPNALSLREIGDELYKAFEVPNKNDTNPLNWLNQGNKMWRLGQLALAYAAYEKALQLDAQLYQAWYGKGLLLTYWKRHQEALAAYEQALKINPDSDTAKKLRDKLQESLGGGNTPSLTPSQPTTAPTVEPSPQPSNPRRLW
>CP011304.1|AKE65298.1|2926333_2926933_+|hypothetical-protein
MLMKWLTNWQVSLVAAVLLTNALVSPSMAQTGNQSDVTGPILSTGDFAGQTIPTTTVTVTGFQGGEPAQISVNQAAASVNTQLANNGLTSPTGTPISPTVQQPILSILTADAQAGNNITAVTAALTTVPGAPPLSVIQNLLDGLNGLTSGGAVNPANLLAAVQTYNEMILASNEAFLASPPAELRAIQASLAALVEAAR
>CP011304.1|AKE65297.1|2925103_2926285_+|hypothetical-protein
MRHIFSGGIFITSCVGTAILCDGVKAIPSPLDIDAASIRVSQEKIIINSPVELERTDRILTTNSFSTTEGLADSNLPSSLENKLEKSSLDTLATEKTGTISTLEEWKANLGTMQASQLFPAGGNNSPEVEKWQAQASTPVDTNVSPELQRLRQEFLIEEPQTLSAKLAEVVVAPGASISTPIGFGASLGQIFGGFGFQSRTRFTNQADGGLSLGGGLGDPQKIVGLDVTLAILSLFDDNAGRGSFSFKIHRSLPEGFAVALGFENAINWGGTDGGSSIYGVVSKFFQLTETTKEPFSQLTLSLGVGGGRFRSEGAIEDGVNSLGVFASAGLRIVEPVSAIVEWSGQDLNAGISLIPFQNIPLTVNLAGADLTGNAGDGARFVMSIGYNYFFPR
>CP011304.1|AKE65296.1|2924080_2924584_+|hypothetical-protein
MKTFVERYRSWFNWTTLAMVVLGFWLSASFVIDLIIIPSLSVAGMMTQNGFASAGYLLFGIFNHLELVCAAIVLCSFVVFHRYHTLIHLPEHRSLLFAGVLLVITLIYTYFLTPNLSAMGLLAPVTASGMSGEMMSLQIGYWFLEVVKGLIAFTLLRWCWRDAFKLA
>CP011304.1|AKE65295.1|2923475_2923790_-|hypothetical-protein
MDKDFRNYRMVCTLTFGDIYGQIIVWLIVIFLTLASTLALWSSTRQIFALATVGLVVVLSLPFLLFAFVTTLLNHIEFVPIETETNIRRGPVPGVSGSRVPAAG
>CP011304.1|AKE65294.1|2923211_2923325_+|hypothetical-protein
MGKCKRLSILKFIIDRDQAANKIIVLTISLLHLFFFG
>CP011304.1|AKE65293.1|2922797_2923193_-|hypothetical-protein
MLKNLFGGKKSDFYLELKETDGEQQATATTAAAAPVVEAPAAAVESAAAPVAEKKAQKTSIKKEKQAKETPAAPVSAPAPVATTNGKVEPQEVEFATKYLITPSLSRRRPGPSLNGFKDMARKAKLPANRG
>CP011304.1|AKE65292.1|2922613_2922754_-|hypothetical-protein
MTLLFHQGASTDSSLAESFFEVGYLGYSLEYFGDNYCLSSWVIFKI
>CP011304.1|AKE65291.1|2922168_2922330_-|hypothetical-protein
MLILKGISIGSSFGSSQVKQIGFLVRIASAMWNSGNLPQVFRHCWAYLNGSLF
>CP011304.1|AKE65302.1|2929984_2931073_-|Isocitrate-dehydrogenase-[NAD]
MTENIPTIVVMHGDQTGEELLLEALRVLQPSIIRQPLNFADFDLSLAQRRQSNNQVVHEAAEATLKTGLALKAATITPEIKGDVGSPNAILREAMNSQVILRIGRRIPGIRPIGGVNSPIAIVRMAVDDAYGAKEWRETTATGDEIAYRTSRISRATSRAVAEFTFQQAKKTGARVFGGPKFTVSATYEGMFKEELDAAAQRHPEVRYQPLLIDATFALLLQTDGEALVIPALNRDGDLLSDFVLQLYGSIAGAESLVLGFDEETLAVKTIMAEAPHGTAPALEGKNIANPMAMILASAALLGYIETSEARKASRAIYESVFETIHEGKKTPDLGGQMTMSEFTDEVIRRVVSKLEVWSALG
>CP011304.1|AKE65303.1|2931069_2931210_-|hypothetical-protein
MVLYIFFCKIDKITELIKVKSIFFSQLTSQLSINIYSKIFIKTQKL
>CP011304.1|AKE65304.1|2931513_2931750_-|NifU-like-protein
MSLTLTPDNVEKVLDEMRPYLMSDGGNVELVEIDGPVVKVRLQGACGSCPSSTMTLKMGIERRLREEIPEIAEVEQAL
>CP011304.1|AKE65305.1|2931823_2932471_-|hypothetical-protein
MTVATTNARDIFRSAYENRYTWDEGFPGYTADIILTQGEEVHTGKIQVNADYSVEVTGIDDEKVQESIYNQMRDIVTHRKRGNFEASHGKNQFNFGQDDPTGAVEILVTGDAMGSNYKVRGQEICQVSRVMGPMAFTINTEESLDTGEGYISIRYNAIFRNAKTDELKGKRDFKETYEKIGNYYLPSCQVINAIDVGGEKSTTEFTFINLQLLES
>CP011304.1|AKE65306.1|2932811_2933048_+|hypothetical-protein
MTKLSPKVTAIIRSGEQQGYVGECVEISIVTQGNTLDEVVNNLQEAILLHLEGEDPREFGLVAQPFLQIIFELQPEYA
>CP011304.1|AKE65307.1|2933316_2935182_+|serine/threonine-kinase
MAEETAKIKLYRKTYQLPQLNRPDLLVLQDQIQERQQLIKTGKRVRNTWLGLRKKEEPLNFEETFQELERLVGDYNQLIGFLTDHKDEYRRFFQSLTEEIKEAVAVKCQKLAETERKRQSLENSIGSADLRDTLRLQKQQIFRTVILVGRASLLMLKKIDLISESIQKLAEDQDTQKQVFSKMIGELNGYKQVYQLQLELDNLEKEAIEMAKVAINLEQYLKPIIGQFQGLIDRVVTIDGELSRSVSEVESLVQNILSSESAVSFRKNENLSASLLNFLVTSEEKRGRLAIALERAEQEGWQWTDVEIPDEEIELETAIQRINNHVIERVGNFTTSVVGDSPIPPPSQPKTPLDNKTPSSPSDWMIPSKSAQPETPLDNKTPFTENLPNGITLEMVNLPAGQFLMGSPDSDPDARDWEKPQHQVKVNSFAIGKYLVTQAQYEAVMGTNPSYFKNNPQNPVEMVTWNDAQAFCQKLSQITGKTYRLPTEAEWEYACRAGTTTRYYFGDDANQLGDYAWYIGNPQQTTHPVGQKKPNAWGLYDMSGNVWEWCEDDWHDNYIGAPKDGSAWTINNDNRSHPKCLRGGSWNINPYDCRSADRGRSNPVYVNDDDGFRVACVSPGL
>CP011304.1|AKE65308.1|2935409_2935646_+|hypothetical-protein
MYSVLEELILIKYEREKLDRLVALNARLDVIRYQTRLLWDFSPLSPERYEYVSKLIEEIGQELGGWIKQQKNKRTPTK
>CP011304.1|AKE65309.1|2935642_2936701_+|hypothetical-protein
MKRYGNLYTDIINFQNLTLAANKAQKGKRFKENVLEFNYNRERELIILEQELRDKTYQHGNYKTFYIREPKIRMISAAPYRDRVVHHALCNIINPIFERTFINNSYANRVGFGTHKALRKFIQYSRTSRYVLQCDIEKYFPSIDHEILKIMIEKKIKCRDTLWLIESIIDNSNEQIPVNHCFDDEDLLTSISRRKGLPMGNLTSQFFANIFLNGLDHFVKENLKVNKYLRYVDDFSLFSDDREFLCYARQEIEKYLASIKLRIHSVKSQLFETKIGATFVGFRVFPDRVKVKNDNLHRGRRRIKRLKQELANGTITLEEMSRSLQSWFAHLQHGDTRQLREKLFDSLISMRN
>CP011304.1|AKE65310.1|2937303_2937579_-|hypothetical-protein
MVYKLPQVSRKEIEAMFSLSDLKQTKVYQEALEEGREEGREEGREEGRQEGELAAKLASIPRLLALGLNFEQIAQALELEIEQVRQATQGE
>CP011304.1|AKE65311.1|2937694_2938207_-|hypothetical-protein
MSSWNETMAVETALSMKALYDQDFVLWASKTAELLKLKKFDEVDWENLIEEVECMGKSDRRAVESLLTRLIEHLFKLAYHKSERERERNVCHWVGEIASFRTQLGEWLETTTLTNHARDYFQKAYSNARKTLIQAKAVTRDAIPLEPPFSLEQVLDGEWFPIDIDHYFDI

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Click the colored protein region to show detailed information

Crispr_ID: CP011304_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_18

3306602-3306697

TypeV

Consensus_repeat	Method
ATCAAGGGGGGATCAAGGGGGGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP011304_18

>merge|CP011304|18|3306602-3306697|CRISPRCasFinder
ATCAAGGGGGGATCAAGGGGGGATCGGCACCCCCCTTATCAAGGGGGGCAGGGGGGATCGACACCTCTCTTATCAAGGGGGGATCAAGGGGGGATC

>CP011304|18|17|3306602-3306697|CRISPRCasFinder
ATCAAGGGGGGATCAAGGGGGGATC	GGCACCCCCCTTATCAAGGGGGGCAGGGGGGATCGACACCTCTCTT
ATCAAGGGGGGATCAAGGGGGGATC

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE65675.1\|3299169_3299445_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340594
CP011304.1\|AKE65685.1\|3308389_3308656_+\|DNA-gyrase-subunit-A	unknown	unknown	unknown
CP011304.1\|AKE65683.1\|3305132_3306413_+\|2-alkenal-reductase	unknown	unknown	gnl\|CDD\|273938
CP011304.1\|AKE65682.1\|3304015_3304762_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65674.1\|3298531_3298999_+\|Protein-of-unknown-function-DUF29	unknown	unknown	gnl\|CDD\|366774
CP011304.1\|AKE65688.1\|3311530_3313042_+\|Threonine-dehydratase-biosynthetic	unknown	unknown	gnl\|CDD\|236417
CP011304.1\|AKE65678.1\|3301377_3301518_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65680.1\|3302181_3302859_-\|Uracil-DNA-glycosylase-superfamily	unknown	unknown	gnl\|CDD\|224489
CP011304.1\|AKE65681.1\|3303002_3303959_-\|GTP-binding-protein-Era	unknown	unknown	gnl\|CDD\|234624
CP011304.1\|AKE65686.1\|3309221_3311234_+\|serine/threonine-kinase	unknown	unknown	gnl\|CDD\|319862
CP011304.1\|AKE65690.1\|3314085_3315252_-\|Aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|235654
CP011304.1\|AKE65677.1\|3300818_3300950_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65684.1\|3306756_3308436_-\|High-affnity-carbon-uptake-protein-Hat/HatR	unknown	unknown	gnl\|CDD\|238121
CP011304.1\|AKE65679.1\|3301632_3302178_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-SSU-rRNA-m(2)G966	unknown	unknown	gnl\|CDD\|223813
CP011304.1\|AKE65691.1\|3315251_3315683_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|366133
CP011304.1\|AKE65676.1\|3299551_3300856_-\|Threonine-synthase	unknown	unknown	gnl\|CDD\|236065
CP011304.1\|AKE65689.1\|3313072_3313945_+\|rRNA-small-subunit-methyltransferase-H	unknown	unknown	gnl\|CDD\|234597
CP011304.1\|AKE65692.1\|3316086_3316200_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65693.1\|3316308_3316773_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65687.1\|3311264_3311378_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE65675.1\|3299169_3299445_-\|hypothetical-protein	gnl\|CDD\|340594	cd17074, Ubl_CysO_like, ubiquitin-like (Ubl) domain found in Mycobacterium tuberculosis CysO and similar proteins. CysO, also termed 9.5 kDa culture filtrate antigen cfp10A, together with CysM (Cysteine synthase M), forms a protein complex CysM-CysO that represents a new cysteine biosynthetic pathway in Mycobacterium tuberculosis. The replacement of the acetyl group of O-acetylserine by CysO thiocarboxylate to generate a protein-bound cysteine is catalyzed by CysM in a pyridoxal 5?-phosphate (PLP)-dependent manner. The family also includes QbsE that functions as the sulfide donor for the biosynthesis of thioquinolobactin in Pseudomonas fluorescens. A JAMM motif protein QbsD catalyzes removal of the carboxy-terminal dipeptide from QbsE. Both CysO and QbsE are similar to prokaryotic sulfur carrier proteins such as ThiS and MoaD, containing the beta-grasp ubiquitin-like fold.	1.99102e-49
CP011304.1\|AKE65691.1\|3315251_3315683_-\|FHA-domain-containing-protein	gnl\|CDD\|366133	pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.	7.61054e-15
CP011304.1\|AKE65683.1\|3305132_3306413_+\|2-alkenal-reductase	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.4099e-119
CP011304.1\|AKE65674.1\|3298531_3298999_+\|Protein-of-unknown-function-DUF29	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	2.5474e-58
CP011304.1\|AKE65680.1\|3302181_3302859_-\|Uracil-DNA-glycosylase-superfamily	gnl\|CDD\|224489	COG1573, COG1573, Uracil-DNA glycosylase [DNA replication, recombination, and repair].	2.93184e-18
CP011304.1\|AKE65681.1\|3303002_3303959_-\|GTP-binding-protein-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	1.00957e-159
CP011304.1\|AKE65686.1\|3309221_3311234_+\|serine/threonine-kinase	gnl\|CDD\|319862	cd16383, GUN4, porphyrin-binding protein domain GUN4. GUN4 is a porphyrin-binding protein involved in chlorophyll biosynthesis regulation and intracellular signaling, found in aerobic photosynthetic organisms. It has been implicated in retrograde signalling between the chloroplast and nucleus. GUN4 can bind protoporphyrin IX (PIX) and magnesium protoporphyrin IX (MgPIX), substrate and product of the Mg-chelatase, as well as heme and cobalt protoporphyrin IX (CoPIX). It may play a role in protecting plants from reactive oxygen species (ROS)-mediated damage.	3.07058e-70
CP011304.1\|AKE65690.1\|3314085_3315252_-\|Aspartate-aminotransferase	gnl\|CDD\|235654	PRK05957, PRK05957, pyridoxal phosphate-dependent aminotransferase.	0
CP011304.1\|AKE65688.1\|3311530_3313042_+\|Threonine-dehydratase-biosynthetic	gnl\|CDD\|236417	PRK09224, PRK09224, threonine ammonia-lyase IlvA.	0
CP011304.1\|AKE65676.1\|3299551_3300856_-\|Threonine-synthase	gnl\|CDD\|236065	PRK07591, PRK07591, threonine synthase; Validated.	0
CP011304.1\|AKE65679.1\|3301632_3302178_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-SSU-rRNA-m(2)G966	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	5.57493e-67
CP011304.1\|AKE65684.1\|3306756_3308436_-\|High-affnity-carbon-uptake-protein-Hat/HatR	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	4.09906e-81
CP011304.1\|AKE65689.1\|3313072_3313945_+\|rRNA-small-subunit-methyltransferase-H	gnl\|CDD\|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	3.7134e-158

>CP011304.1|AKE65683.1|3305132_3306413_+|2-alkenal-reductase
MTHNIFNDNISPSNEGNPKRSKSSAMKKLFAYSSLLVLGAGLGIGATYAYSQNPLELAQNIATAATNPRPSTAAAAAPSTLVIPTNFVASVVQEVGPAVVRINASREVNGGGDFSEFANDPVFRRFFGSQIPERGERQVQRGTGSGFIISNDGKIITNAHVVEGADKVTVTLKDGRTIDGKVLGSDPLTDVAVVQVETGNLPTVKLGNSDSLQVGEWAIAIGNPLGLDNTVTTGIISAKERNGSQIGASDKRVDFLQTDAAINPGNSGGPLLNARGEVIGVNTAIIQNAQGLGFAIPIKTAQRIAEQLIATGKVEHPYLGVQMVQLTPEVKEQLADSPMADNWTIPDDSGVLLVRVMRDSPAAAAGLRSGDVLKSVGGKNVTDPDAVQEIVANTQIGDNLPVEISREGQKINLNIQVGSLNTANKS
>CP011304.1|AKE65682.1|3304015_3304762_+|hypothetical-protein
MLVLILGCSNHLELSIAGNLSDRLTNYPRWMTKPVVSFASGDLVYPDWMVGNWTVTSTLIDLTAPLAPQIITPGFESNRRYLEQSIEFPVRFIEKAISRPINAAFLSTIISKPSIVADRSFNGLAISRAYLGNQSVLSVKTDPNNPNRQITFLRGAHQLISTVIARNSETPSRNQFIATEISQQIFRGETNTYLNEVETTTAYQLLSPNKILGDQVTAIYLSPQSPDYFQAPNRPVALYRYRLELRKD
>CP011304.1|AKE65681.1|3303002_3303959_-|GTP-binding-protein-Era
MNDFINSQAVNLDSAVIPIAPTGFKSGFIGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGIVTGERSQMIFVDTPGIHKPHHELGKVLVKNAENAINSVDLVLFVVDSSNFLGSGDRYIADLLTKNQTPTILGLNKADQQPEDREPLDDSYRTLAAENNWPLLKFSALEGMGIAELQNLLIDSLEVGPYYYPPDLVTDQPERFIMAELIREQILLQTRQEIPHSVAVVIERVEETPALTRVFAAINVERDSQKGIVIGKNGSMLKALGTSARSAIQKLIAGEVYLKLFVKVEPKWRQSRSLLAEFGYRTEE
>CP011304.1|AKE65680.1|3302181_3302859_-|Uracil-DNA-glycosylase-superfamily
MTDIKTLIKQVHQEAKKEDFPIDTLIYQEAKKDPFEPVLYAGNLASQLCFFGRDLGRDEVYAGQPLIGAAGRMVREGFFQAWQGRKSHDRQELLSVCDQIFLTNTVPYKPPGNKAYSGEVKDRFRPFIEKLLVFYWQGDHIITLGTEAFKWFEPYGKPKEVDKFYLDKERFTKKLLVTLTATDEDGLKQQKKVTLLPLPHPSPLNQRYYALFPDLLQKRLTEFAF
>CP011304.1|AKE65679.1|3301632_3302178_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-SSU-rRNA-m(2)G966
MRIYGNRPIKTLAGQLTRPTTARVREALFNIWQHKLSGCRWLDLCAGNGSMGAEALCRGASLVIGIEQSGRAGEIIKENWRNLATSPQQFQVIRGDVLTKLATLAGESFDLIYFDPPYESGLYLPVLTAISQYNLLDSLGEIAVEHNPKSWPAINLEGLTICRQKRYGNTTLTFYQKTDEL
>CP011304.1|AKE65678.1|3301377_3301518_-|hypothetical-protein
MGNLGTAARNGQFYLAAQKNGSSGFCVEGRRIGIIWVHLNLVEISR
>CP011304.1|AKE65677.1|3300818_3300950_+|hypothetical-protein
MNFEVSMFVARVMIFLSCRQLMYKHPITGKILVSNIPDYFCRV
>CP011304.1|AKE65676.1|3299551_3300856_-|Threonine-synthase
MTLATNIETSKFIPTFTRLVSKEGGTSYPLKALNICEETFAPLEVDYDYDLIRRTVTRESIQAGPNSIWRYRSFLPVESENPIDVGTGMTPLVKSHRLARRLGLKNLYIKNDAVNMPTLSFKDRVVSVALTRAKELGFTTVSCASTGNLANSTAAIAAHAGLDCCVFIPSDLEAGKILGTLIYNPTVMAVKGNYDQVNRLCSEVGNTYGWGFVNINLRPYYSEGSKTLGFEVAEQLGWKLPDHIVAPLASGSLFTKIYKGFQEFVKVGLVADKAVRFSGAQAEGCSPIAQAFKEGRDFVAPVKPNTIAKSIAIGNPADGVYALDIARKTGGNIESVTDAEIIEGIKLLAETEGIFTETAGGTTIAVLKKLVEAGKIDPEETTVVYITGNGLKTQEAVQGYIGEPLLIEPKLESFERALERSRTLERLEWQQVLV
>CP011304.1|AKE65675.1|3299169_3299445_-|hypothetical-protein
MAVKVLVPTPLQQFTKNKATVECSASNVGDLIESLEASFPGIKARLCDEEGAPRRFLNFYVNSEDIRFLDGTKTPLKDGDEVSIVPAVAGG
>CP011304.1|AKE65674.1|3298531_3298999_+|Protein-of-unknown-function-DUF29
MSKTLYEQDFQVWLATTISHLQKREFAALDTDNLIEELTELGKSEKRTLESNLMILLAHLLKLKVQQDAPPSMKDSWYCSIIEHRQRIEKNLRNTPSLKSYLETAIEEAYPDARQVAIKEGKLAQFGVRIPPENDYPQICPFLPEQILDENFYGN
>CP011304.1|AKE65684.1|3306756_3308436_-|High-affnity-carbon-uptake-protein-Hat/HatR
MAKKLDFVIPAVGGVTGANLSACLGNIGLVGGFGGISVGLVGMTGIGILTSSAIYASLQGLETNDHNVGLALGIGSLGGIGIYSTFGGVGVAVKGTAFGVGVGSMAIAGGIVGLGVYGVMKMLSPTYSDNNFYSNLEFFDRITREYEEALFWQEVTGKYENLEAELQQLLEEVSIQENQQLDSTEITIPERLSWQCFQTLKGHQENIGAIDVSPDGKIIASAGEDQTIKLWQRETGKLIYSFVGVNEPIQTLAISPNGKSIIAGGLDGRISQWQLDTKQYKSSFFARVNAPHSHDGVILQLAFAANERFIVSASNDKTLRIWGYHTGELKRTLIGHEEAVNTCAISPDSQIIASGSDDKTIKLWRFDHSYAYQTFIGDRAAVNSLAFSNDGQYLISGGSDKAIKIWDIKTGEMIKSWQAHEQAIISIAINPHRHLIASASRTEIKIWQGQTGELIKILRGTAPLKFSPDGQFLITGSYGDKVKIWSEMLGELEILPPDSEDWWEVLEVSKNASFSEVKQRYYQLARQYHPDHNSSAMAIKIMQKINRAYERFLFSISQQ
>CP011304.1|AKE65685.1|3308389_3308656_+|DNA-gyrase-subunit-A
MTPPTAGITKSSFLAIFLRNNQVSHRVSPIEFSLVWYRRLTPQSGTFPSCPLPTASFKSVPMKKFSPPQMKEVSFPTPLGLIQGRVDS
>CP011304.1|AKE65686.1|3309221_3311234_+|serine/threonine-kinase
MSLCLNPDCSHQNTPTDKFCHKCGSQLLLRERYRALKLIGQGGFGKTFQAIDEDKPSKPYCVIKQFFPSAQGTETLQKAAELFKEEAIRLDSLGRYPQIPELYAYFTGNGGRQYLVQEYIEGQNLEQELKQEGVFNEAKIKHLLSEILPILEFIHSKQVIHRDIKPENIIRRKSDNKLILVDFGAAKFVSPLNRSMTGTIIGSAEYIAPEQGNGKAVNASDLYSLGVTCLYLLTGISPFDLFDGGEHQWVWRQWLVNNPVSNELGNILDKLIEFGTKKRYQSASEVLQALQIKTSVSISQTTIQKPVNPIISVPQTPPSIQLKSAKGIDYRNLEDLLKQKRWKEADEETANLVRKVTNRVKDWLRDEDIQKFPCEDLRTIDQLWVYYSNGKFGFSVQGQIYREIGGMEEYNERNWDIFGSLVGWQKNNSWNWQDINYSWQAPQGHLPLIRYGYKGEGSYIIYHLTSRIFICQTSSHQIINQKQPVATIIQSPIISVPQTPPSIQLKSAEGIDYRNLEDLLKRQQWKEADQETERVMLQTANRTKERWLRKEDIDKLPCEDLRTIDQLWVKYSNGKFGFSVQAKIYHDLGGTQEYNDKIWNGFGDKIGWRINNSWIEYKDVIFDFKALQGHLPADVPIWRCGNWHDPIWWSSFPAIKRGINLFSRVETCKM
>CP011304.1|AKE65687.1|3311264_3311378_+|hypothetical-protein
MYRRENQMLEITKNYVLDEDQKLIAVKILIAEFEKIA
>CP011304.1|AKE65688.1|3311530_3313042_+|Threonine-dehydratase-biosynthetic
MYCDYLVQILTARVYDVAQETPLEFAPNLSQRLHNQLLLKREDMQSVFSFKLRGAYNKMAYLSRDLLQKGVIAASAGNHAQGVALGARQLGTQAIIVMPVTTPQVKIDAVKARGGIVVLHGDTYDDSYTYARQLEAEKGLTFIHPFDDPEVIAGQGTIGMEILRQYQQPIEAIFVAIGGGGLISGIAAYVKRLRPEIKIIGVEPVDSDAMNQSLKAGYRVRLSQVGLFADGVAVREVGEETFRLCQQYVDEIILVDTDDICAAIKDVFQDTRSILEPAGALAVAGAKAYVEREGIEDKTLVAVACGANMNFDRLRFVAERAELGERREALYAVTIPEQPGSLRRFCECVGKRNLTEFSYRIADEKEAHIFVGAQIENRSDAKKLAESFEACGFKTLDISDDELTKLHLRHMVGGRSHLADYELFYRFEFPERPGALMKFVASMSPHWNISVFHYRNNGADYGRIVVGIQVPPDEMNQWQAFLDTLGYRYWDESQNPAYQLFLG
>CP011304.1|AKE65689.1|3313072_3313945_+|rRNA-small-subunit-methyltransferase-H
MNQDFPHISVLSQELIAGLNIQPGGHYLDLTLGGGGHSRLLLEAHPETKVTAIDRDQSALEAAKISLGPYLDSRLTLWWGNFADYNGQNSSFDGIIADLGVSSPQFDQSERGFSFRHTAALDMRMDRCQSLTAADIINHWQEKELADLFYQYGEERLSRPIARSIVQKRPFTTTTELAAVIASSVPASYRYGRIHPATRVFQSLRIAVNQELDSLQKLLNQAPHWLKSGGIIAMISFHSLEDRLIKYGFREDNSLKIITKKPIIPSREEQAKNPRSRSAKLRIAQKISCS
>CP011304.1|AKE65690.1|3314085_3315252_-|Aspartate-aminotransferase
MKNLLSRMDGVQTPIIPVVGQLIKANPGTISLGQGVVSYYPPQEALESLSLFLANPKNHQYQSVAGIPPLLAVIRQKLAEDNRIEISDKQAIFVTAGSNMAFMNAILAITSPGDEIILNTPFYFNHEMVIKMADCQVILVATDKNYQLRPAAIEEAITEKTKAVVTISPNNPTGVVYPENTLREVNRICQKKGIYHIHDEAYEYFTYNHARHFSPAAIVGSESWTISLFSLSKAYGFASWRIGYMVVPEHLSEAINKIQDTILICPPVVSQYAALGALQVGKSYPLEQLKTISKVREICLNALESIGDICDVATAEGAFYFFLKIPTDKNDFQLVKTLIEQQRVAVLPGSTFGITEGCYLRLAYGALSPETALTAVERLVKGLRYFSQ
>CP011304.1|AKE65691.1|3315251_3315683_-|FHA-domain-containing-protein
MDSSSTLLGSIDYFNKKPLKKVSKAFLLHEETGTLLEISGRKNRFYLGKVNPKVTVDLDLSHLPDAEIVSRVHAIIYVEKDGFYLEDAGSLNGTYLNGENLQSGRKKLKSGDRITLGYYRAINLLFEIESAHPPQYTFKSLAN
>CP011304.1|AKE65692.1|3316086_3316200_+|hypothetical-protein
MAQLRFFRASQSSEPVQMGKKVFIADFWENYPIFALD
>CP011304.1|AKE65693.1|3316308_3316773_-|hypothetical-protein
MATATQFLNISDLTKDDYCVFGLAICFLKREGELEKVAVLEPIPSAALEAIVKGIPTSYEFARAMALGEVFQDDNPQIPSNFPDNTQLCENFVERAIAATRTYKNQPHLQGLIPLGGQKDDLNFSLEKKRILNAVHVVRTEDNVKQHSHTHKVL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP011304_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_21

3599679-3599861

Unclear

I-D,II-B

Consensus_repeat	Method
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CRISPRCasFinder

2 spacers

cas2,cas1,cas4,cas6

The CRISPR arrays of CP011304_21

>merge|CP011304|21|3599679-3599861|CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTGAATATTGGATTGTTGAGGGGTAATTATGGCTGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACACGTCTCCGGGTCAACCCCGGAAGTGTCACGGTACGCTGTTTCAATCCCTAATAGGGTTTAAGATTAATGGTTCT

>CP011304|21|20|3599679-3599861|CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGAATATTGGATTGTTGAGGGGTAATTATGGCTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACGTCTCCGGGTCAACCCCGGAAGTGTCACGGTACGCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATGGTTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE65992.1\|3612814_3613087_-\|CRISPR-associated-protein-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP011304.1\|AKE65995.1\|3614705_3615539_-\|CRISPR-repeat-RNA-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
CP011304.1\|AKE65981.1\|3592922_3593405_+\|Cytochrome-c,-class-I	unknown	unknown	gnl\|CDD\|379187
CP011304.1\|AKE65996.1\|3615538_3616105_-\|Protein-of-unknown-function-DUF820	unknown	unknown	gnl\|CDD\|99749
CP011304.1\|AKE65994.1\|3614109_3614703_-\|CRISPR-associated-RecB-family-exonuclease-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
CP011304.1\|AKE65991.1\|3611751_3611886_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65993.1\|3613099_3614104_-\|CRISPR-associated-protein-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
CP011304.1\|AKE65979.1\|3591107_3591788_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227688
CP011304.1\|AKE65986.1\|3599063_3599558_+\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|315923
CP011304.1\|AKE65983.1\|3595915_3598081_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226428
CP011304.1\|AKE65990.1\|3609111_3610608_+\|transposase	unknown	unknown	gnl\|CDD\|290319
CP011304.1\|AKE65980.1\|3591832_3592894_-\|Putative-transport-system-permease-protein	unknown	unknown	gnl\|CDD\|366370
CP011304.1\|AKE65977.1\|3589769_3590012_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224246
CP011304.1\|AKE65985.1\|3598665_3599109_+\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|225949
CP011304.1\|AKE65982.1\|3593744_3595898_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226428
CP011304.1\|AKE65978.1\|3590019_3590835_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378597
CP011304.1\|AKE65988.1\|3603598_3603757_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65989.1\|3607003_3608152_-\|Mobile-element-protein	unknown	unknown	unknown
CP011304.1\|AKE65984.1\|3598093_3598627_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65987.1\|3599881_3601108_-\|Transposase	unknown	unknown	gnl\|CDD\|376574

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE65992.1\|3612814_3613087_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.25525e-37
CP011304.1\|AKE65995.1\|3614705_3615539_-\|CRISPR-repeat-RNA-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.28864e-45
CP011304.1\|AKE65981.1\|3592922_3593405_+\|Cytochrome-c,-class-I	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	3.50185e-08
CP011304.1\|AKE65994.1\|3614109_3614703_-\|CRISPR-associated-RecB-family-exonuclease-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.35866e-54
CP011304.1\|AKE65993.1\|3613099_3614104_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	2.59523e-141
CP011304.1\|AKE65979.1\|3591107_3591788_+\|hypothetical-protein	gnl\|CDD\|227688	COG5401, COG5401, Spore germination protein [General function prediction only].	9.43183e-25
CP011304.1\|AKE65986.1\|3599063_3599558_+\|Mobile-element-protein	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.32222e-41
CP011304.1\|AKE65983.1\|3595915_3598081_+\|hypothetical-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.38343e-162
CP011304.1\|AKE65990.1\|3609111_3610608_+\|transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.0941e-34
CP011304.1\|AKE65980.1\|3591832_3592894_-\|Putative-transport-system-permease-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	4.78128e-37
CP011304.1\|AKE65977.1\|3589769_3590012_+\|hypothetical-protein	gnl\|CDD\|224246	COG1327, COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription].	0.00107048
CP011304.1\|AKE65985.1\|3598665_3599109_+\|Mobile-element-protein	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.76321e-21
CP011304.1\|AKE65982.1\|3593744_3595898_+\|hypothetical-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.2671e-152
CP011304.1\|AKE65978.1\|3590019_3590835_+\|hypothetical-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	1.67573e-22
CP011304.1\|AKE65996.1\|3615538_3616105_-\|Protein-of-unknown-function-DUF820	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.55985e-27
CP011304.1\|AKE65987.1\|3599881_3601108_-\|Transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	4.17478e-80

>CP011304.1|AKE65986.1|3599063_3599558_+|Mobile-element-protein
MEYWSQVREIEASKLIFIDESGVNLALLRLYARALIGRRDRGRKPQKRGRNISIISAISLEKVVASVNIYGAVDAVTFEGFILKEVLPKIKEGDCLLMDNAKIHLGEMVREIIEQEKARLIYLPPYSPEFSPIENFWSKVKAILRKLKARTYKDLIEGIELAML
>CP011304.1|AKE65985.1|3598665_3599109_+|Mobile-element-protein
MRPYSVDFRQKIIDVWKKEKISIRGLAQRFDVAKSFIQKLLKQHKETGDIRPRPQGGSPPTKLNSEQLIILIEIIESNNDATLEELSDLLYEKTQVKVSRATLGRLTQKLNYSFKKKHYTRRKKKVTGYSKKEWNTGLKFGKLRHQN
>CP011304.1|AKE65984.1|3598093_3598627_+|hypothetical-protein
MQLHQDIQPHLNDNNYQLVLQFYEQLIENNSPVIEDYFYLGLAYLLQDREEDAQATWLLVLSQAAESELSGWIKTLTQILDAEATRQENSQRLETSYLIRLHLQNLNPSFLNNLLHLMELEIQFQIFAMEKCHDWCVFELLENTATAAINLDLLLGVTEKVLIYPSTYSTSWSYEVQ
>CP011304.1|AKE65983.1|3595915_3598081_+|hypothetical-protein
MSWQNEVKTALENNQYDIVSQFYEELIERETTEISHYWYLGLAYLLEDREEDAQATWLLVLSQAAESELSGWIKTLTQILDAEATRQENSQRLETSYLIRLHLQNLNPSFLNNLLHLMELEIQFQIFAMEKCHDWCVFELLENTATAAINLDLLLRVTEKVLIYPCTDTIHFLELAALHINNPEIIATKVISAIVNYAYQQKQSVFAINLVELCLRFLPEDLYLQNSLFNLYKTTTIDYKKSLEIADNFYKSCQTTTEKLLGISLVIAISQAKGDWGNLPKFIDELIQLIERQINAKQFNARPFIIDSILGVTICLPYYQDNPKINRYLQSKLAEIFQADVRTRYNYIAPVSSPKSPARKIKIGYIAYTLRRHSVGWLSRWLFHYHNRDKFEIYTYFVNQAADEITEKWFINNSDYSYNLPAKIEQITAQIRQDNLDILVDLDSLTNNTTCLVIALKPAPIQVTWLGLDASGIPAIDYFIADNYVLPENAEEIYSEKIIRLPNSYLSVDGFEVGVPTRRRTDLNIPDDAIIYLTVQSGLKRTLNMIYLQLQILQQVPNSYLLIKGFADKETIRELFLKSADELGISQDRLRFLPNDFNEETHRANLGIADIVLDTYPYSGATTTLETLWMGIPLVTRVGEQFAARNSYTFMKNAGISQGIAWSDEEYVQWGIKLGLDKNLREEVRWKLRKSRHTSPLWNSKQFTRNLETAYQQMWNIYCQS
>CP011304.1|AKE65982.1|3593744_3595898_+|hypothetical-protein
MSWHSQVEPAIIQGDFWQVSQFYEELIEREPLEISHYWYLGLAYLLEAREEEAQTTWLFVLSQGDEQEMNSWTVDLVNILDGEARRQVEVKNWQLSWVIRQHIYQINPDNLENLLYLVLLEIKLEYFYPQKLKDWQIVDLINSDKLENFDINLLLHTIYKLLDWPAQEVLDIIITLLKIDSQQSAILEIIEQHIEKIYYTDKTNAVILTLSCLDIIPDHLVLLHKIHQYYIDTGNFELALETANKIKNLSNDKAAKLYGIYLLLYTEILAGNWLNIDNKTQEYYQAIQNNLERGQCPMSNQAEVISITSPLAYLKDDLVGNRWLTNQLAKLFQEAVRKRFNQVTIESQKPKDVNKKLNIGYIAHTLRRHSVGFLSRWLIHYHQRDNFNIHLYLVNQVEDDITEQWFKNKVDKYNNLPANPQIIAEKINQDNIDILVDLDSITKDNTCRVMALKPAPIQITWLGLDATGIPAIDYFLVDNLVLEKNAQEFYQEKLWRLPNCYLAVDGFEIGIPTLTRQDLNIPADAITYLTLQVGLKRNPATIRLQMQIIKAVPNSYLLIKGAGSEKLINDLFISIAKEEGIDENRLRFLSGVANEEIHRANLQIADVVLDTYPYSGATTTLETLWMGIPVVTKVGQQWSSRNSYTFMTHGGISEGIAWSDEEYVQWGIKLGKDEQLRRKVIAKLDESRQTSPIWNARQFTKDVENAYRQMWQIYCES
>CP011304.1|AKE65981.1|3592922_3593405_+|Cytochrome-c,-class-I
MSYIILHLPISSSGGGILGQKVAKCKEKLIFPSAACVNSQLVKPKFGLYRFLMVIIVVLFLISTFLITFHLAKMSDPYIKEVLSRQGNVSRGYEIFQINCAACHGQFADGIVGPSLEDVSRRKSRISLIEQVISGKTPPMPKFQPDTQAMADLLVYLENL
>CP011304.1|AKE65980.1|3591832_3592894_-|Putative-transport-system-permease-protein
MNLLTRLEDWPYIILPITIVLSFLLLGWLVEQRVVSQLLSIAREKNLRFSEGVLRSLRGLSILWFGLLGLNIALSLPNLPLFPSLILLSQKFLLVAFLASATWAIAQLSVEILRVYTTGDDGISSLTSLFEFLAKVLIFSCGFLLILSSVGISITPLLTAFGIGGVSLGLALQNTLANLMSGINIITSKKVRPGDYIELRTGEAGYVRDVDLRCTVVEEITNNLLVIPNAQIISSSFRNYSLPDHSLLVPVEVGISYDSDLEKVEKITREVIQEITQLLQPNLGDYQPLIRYGKFDYYSILLTVYLKVVEEEFFQHLTIKHEFIKLLHRRYQQEGIKIPYPIFFPYPPTNPPS
>CP011304.1|AKE65979.1|3591107_3591788_+|hypothetical-protein
MPSSRSSDKISLPWIIGIGLALFTAGGATAWFAVHHLSSSQKTSENPIESPSPVPISKSPIVEPVSPGPVKTSPTATPAAIPVRETRQVYWLKVTDTGNQLVSQKITVQKADSRDRELTAVLKILLAGPSNSKDMTTIPPGTKLLDLKVDKTGIKINLSREFGNDDGPDMLIGRLAQIIYTTTAEDPNAKVWIQVEGKPLELLGEGHGLEVAQPMTRKFFEENYQL
>CP011304.1|AKE65978.1|3590019_3590835_+|hypothetical-protein
MEWLTITLASVLTLLTPAGAIIDRVLADILRSQVQKVEQLAVRVDNTPNYQALQGKIDRVRISARGIYPLADVRIEKIELETEPISLDLRRLQQKNGNLAASLRRPAAGALHLVLTETNVNQALQSAAVKGPIQTLINNLIPSREEFGITKYQFSQANFNFLNNNRVALRLQLETQRLDEPAASLDLSLEVGFKLVQGRKIELIDPTATLNGRRLSSRLLKGFAEGISTQLDLKNFEKQGIIARLLQLQIDDDKLSIAAFGRIEPRSGNPN
>CP011304.1|AKE65977.1|3589769_3590012_+|hypothetical-protein
MNYPIPTTPEEIAALRQRPVDEEMIAAVIAGIIRMARAQGQSLNDLTEEILAEDQVLDQVQRRWLSQLLTNAWQNLAEWV
>CP011304.1|AKE65987.1|3599881_3601108_-|Transposase
MPSNPQLKLMTELLHLEGVVVTNYQIITDIGIVLHLENMSRESQCIHCGSKTEKVHQNNELTIRDLPFGEQALYLRINRRQMRCEKCGKKFTEELNYLPKKRTYTDRFRKKIVAEVLNSDLKNTAERNGVSEQEIETMLKDLGEELITAKPQGLKKLGIDEIAMIKGKGNYYAVLVNIDTGKIIGLGEKRTEEALTEYLKHWGEEVLSQIEEVSIDLWIGYKNVAEKLMPQAQIVGDRFHVMKQVNNELDEARKEVKREAAKIKNKKNKENILAGIAKSKYALLKNEGDLVEKERKKLEEIYKVSPKLGEMHKLKEEFREVFEKNTEGNEGLFALSDWLKKAMAYFPKSCQTIRRWIDEITAYFDNRTTQGTVEGINNKLKVIKRRGYGFRNFKNFSLRCLLNWHFAS
>CP011304.1|AKE65988.1|3603598_3603757_+|hypothetical-protein
MFQSLIGFKINWNVSSDEEAVVFYEFQSLIGFKINWNSGSKELGLRCKSFNP
>CP011304.1|AKE65989.1|3607003_3608152_-|Mobile-element-protein
MISELYQKVLENELGRARYLLLLMIVGTLQILKQAKLEILAEALPIPILFESRRKKLKRFLKLEILNIEKIWFLCLKEMLKQQQRFTTKGLAYIAIDRTSWGAINILMVSLIYDKRAIPIYWEILDKKGSSNLEEQQRVLEKTLTVLSGHKIVVLGDREFCSVSLGKWLQKQSLYFCLRQKKSTNVKTKEGIYQEMRELGLSPGTQLFLNDVNITKEQGFGQFNLAGKWKKTYGGFQTKEPWYILTNFVDLETAIIAYQKRFDIEEMFRDFKSGGYSLEGSQLAPQYLSKLIIVIAIAYTSATLQGKKIKDMGIQKYVTRPEKRYKGQRRHSSFYVGQHLYHWLQLHQMFQKNIEELMQISRYRLKDYIKGQRAISLALSTF
>CP011304.1|AKE65990.1|3609111_3610608_+|transposase
MYRKSELPSTPPENFELPFEGKLSQDNRWVIMANLIPWSEFEAEYASLFSEEMGTPAKTFRTALGALIIKEKLGTSDRETVEQIKENPYLQYFLGFSSYSNEPRFEASMLVHFRERITLELINKVNRFMVKNSREIKEEENTEKKLESETQSQPENRGKLILDASCAPADISYPTDLNLLNQGRKQTEKIIDILYETLKGKLVQKPRTYRLLARKSYLEVAKKRKPTVKQRRKALKRQLQYLKRNLDHIEQLLAEGASLQSLKKRDYKLLLVVTEVYRQQLWMYQNNKQSIEDRIVSLTQPHIRPIVRGKAGKPVEFGAKFSASCIDGYIFLDRISWDNFNESGDLKAQIEAYYDYTGYYPESVHVDKIYRTRENRAWCKERGIRISGPPLGRPAKNVSKEQKKQATDDERIRNCIEGKFGQGKRRFSLGKVMAKLPHTSFSAIAITFLVMNLSNLLRQVFWAFLCLKWKNSTFSRSMIRISYNLKINQQLKLMLVAK
>CP011304.1|AKE65991.1|3611751_3611886_+|hypothetical-protein
MFQSLIGFKINWNALDDLLQSLEGLFQSLIGFKINWNAVKAQPC
>CP011304.1|AKE65992.1|3612814_3613087_-|CRISPR-associated-protein-Cas2
MYFVISYDISDDKRRTKIHNTLKSYGQRVQYSVFECDLTDTQYAKLRGRLSKLIKPDTDSIRFYFLCACCRGKVERIGGELPRDNTIFFV
>CP011304.1|AKE65993.1|3613099_3614104_-|CRISPR-associated-protein-Cas1
MGTVYVTREDAFLGKNDERLTVKASKETILDVPLLNVDGVVLFGRGSLSPALVIELLERHIPLSFVTSTGRYLGRLEPEMTKNIFVRRAQWQAAGDSPKAIHLVRGFVRGKLKNYRNILLRRQRDRKELDLQTAIACLEAAIGSIETTSAIDSLRGLEGAGSAAYFSCFDSLILGDTFTFASRNRRPPRDPVNSLLSLGYALLRHDVQSAINLVGFDPYLGYLHYQRYGRPSLALDLMEEFRAIVVDAVVLNGVNHPYLTPEHFTTEPLSGAVSLTREGLQIFLRLYEQKKQSKFKHPVMSKQCTYQEAFEIQARLMAKYLMDETDKYPPLILK
>CP011304.1|AKE65994.1|3614109_3614703_-|CRISPR-associated-RecB-family-exonuclease-Cas4
MDESDYIPIAALNHYAYCPHRCWRMFVAGEFLNNSYTIEGTNLHERVHTVGAGNREEIWQIRAIWLKSDNYRLIGKADLIESHDGEFIPVEYKRGSKGEWDNDELQVCAQAICLEEMTGKRLDTGYIYYASSHQRQPVAIDLALRQRAIATIRAVETLIQTGKMPPAVYSPRCKGCSLFDRCLPRLTEKVQRYQEED
>CP011304.1|AKE65995.1|3614705_3615539_-|CRISPR-repeat-RNA-endoribonuclease-Cas6
MPYSLVLNLTPRSPIYPNFLTGRHLHALFLTLVSSVDQELGNILHASDADKAFTLSPLQMQSRRKTINFPRWRHEREIAPETPCWWRISLLDDRLFGKLTPLWLNLNPKQPWHLGSADLVITSVLATPQSVQPWANSCTYQYLYENASETNREFDFLFATPVTFRQGKFDSALPTRELVFNSLLSRWNRYSGISFDSIALESIFPSFFDIQTKLTDEAYKNQSIGCVGEIHYRLLGEVEPAKIKAINALADFALYAGVGRKTTMGMGMTRRISKDKR
>CP011304.1|AKE65996.1|3615538_3616105_-|Protein-of-unknown-function-DUF820
MTLISSKSLTLPEFLSLTPPDGDITYELVDGEAIPKMSPKFFHSRLTGALFLLLDRWNQGRGEVGIEWAIVLSKNDRDWCPVPDLLYISPERLGDITLTDEACPVPPELVIEIISPEQSFSSLSEKAVDYLKAGVSRVWIVDPQAKQITIFYPDAPPAIKKGDDEMSDILLPDLTLTPGQIFAKARLS

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Crispr_ID: CP011304_22

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_22

3601305-3606945

Unclear

I-D,II-B

Consensus_repeat	Method
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CRT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	PILER-CR

78 spacers

cas2,cas1,cas4,cas6,cas3,cas5

The CRISPR arrays of CP011304_22

>merge|CP011304|22|3601305-3606945|CRISPRCasFinder,CRT,PILER-CR
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAATTCAGGGTATTTTGGCTTAAATCCCCAAAATTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTAGGGTGTAAAGAGTCGATACATAGCACATATCCCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACACGGTTCAACCGACCTAAAACAACTATTAGCAGGGGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTTTTTCGGCTATTTTTAGCCCAATTCTGTAGGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAGTGGAATTAATGCTTAAAAATACTGCTGAATTGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAGGTAACTGACTAGGGACGGTATCAGGCGAATTAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCGGAACACTCAAGGATGCCCTAATCTCGTTGTTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTATTTCTAGAGATTTTAGGGTAATTTCTAGGATCGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACACCCCGCAGCACTCGGATCGATTTACGATTACCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCTGTATCGTGCCGTCGATTTCATCCCCATAGATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCCCGTTGCCAGTCAGGTCTGTCGCGCCTGAAACTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAATCAGCAAAGTGTTAAGGCTAGAATGGCGCGATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCTTGTTTTATTTGGTATCCACTCGATAATATCGTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTTCTTTTTCTTTCGATTGGGGCCGGGAGTGTCTAGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCCGGGACGGACGGTTATCTACTCAAGCTATCTATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCGATCGCCGCGTCGATCTTTTCCTCGAAGTTGGGCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCGGATCCGAGTCGGTACGACTGCCAGAAAACTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAGTGAGGGTCATCCCTACTACGCGCCCGTTAAGGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTGGGAAAATACCATTATGTTTGGTGATGAAGTCGATGGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTTTGATACTGCAATTATACCTATTTGTGATTATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTATAGACGTTCCGCGAATACTACTTTAGCCCGTGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAAGTCCATCAACACATATATGTGTTGATTTTCGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAAAGGCCAGGATTTTACCCTATCTGTACTCGATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACACTTTATACAAGATACTTATACATACTTTATACAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCGAGGGTCGCTGGTAATATAAAATAAATCCGTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATAATTTAGAAGACTCGATCGATATCCAATCGCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATCTAACTGTGACACTTTGAGAATTGGCACTCGATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAGAATGATGATGCTTCTTTTCTGTTTTTAGCCTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCAGGTCTAATAATTCAAGCCCTGTCTCGTTAAGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGAAAAAGGGGTGAACCCGAAGGTAACTCGTGGGATTTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTAACCTACTCTTTCCATATTTCTTCTCAAGCTGGTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAGAATTTTTTCGAGATTGGGAGAAATAGGAAGTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTTTCCTCTGATGAGGAAGCGGTGGTTTTTTATGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCAGGATCAAAAGAATTGGGATTAAGATGTAAAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATCAATCAAGAAACTCAAGAAAGCAATCAAGAAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTAGGTGAGATGCTGAAAAATAAACCCGTCTCTATCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATTGTTCCCGTTGCCGGTCAAGTCTTTTGCCCCGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCTGCTAATTTAGCGACTCCTTTAAATGGTATCGTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCGGTAGCAATTAGAACTTTACTAGAATCCTCTTTAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCAGTACACCGGCGATTATATCATTTACAGAATTGTCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAGTACAAATAAAAGATTATGTAACTTTTATTAGTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCGTTTTTAACGGTTTTGGGTTTCGTATCCTGATCGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTAAAAAACCATTATTTAGAAGCAAGAAAAAATGCCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCCTTTACCAGACCGGCATAATTCAAGGAATTGGCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATTGGGTGCGATACCCGTATCCTTGATAAATCGGTAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTACCCTGGAATCATCGGGATTTGAAATCAAAGGCGGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGGTTCAACCGACCTAAAACAACTATTAGCAGGGGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTGGATAGTTTACATCGCTTTTATCTATCAGAAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATGGTGTTTTTTGTAGTCCATATTTTGATATTTCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGAAAAAGAATTTGAGAGAAATAAGAGAAGATTTGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCTATCAGAAAAACTGTTTTATCTGTTGCCACTAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTGTATAGTGTCAAGAGTTTTATTCTAAGTAGTGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATTAATACTATCTTCTCTATTTCTTTTTGAATTTTGTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCTGTTTTTTGCTTGCCAGACCTTAATGCAACTGTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTCATGGCACGTCAAACTATTTATTAAGCAATGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTTATTAGATTTTTTTTGTGCTATCATAGTAGAATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCCTCGCTGGTTTCCTTTAGTTTTTTGATGTTTTCCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCCCCCCTTCCCCCTCCGGCCCGACCGGCGATCGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAGCATTAAAGGGGGATAAGGTTATCCCCCCAGCGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATGGCGCGGCCGATGATGCTTTTTCCTTCCCCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTAACATAAAATTCCCATCGGTTCCATCTTCTACTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTATTCCCGTCGCTATGTGATTAAGAACAGTCCCTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAATCAGGAAACTGTAGAGACTGACTCAATAGATGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCGAAAAAGAATTTGAGAGAAATAAAAGAAGATTTGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAGCATTGACTCGATTTGTTCATACTTAAAATCGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTTTTGATATTGAAAATAAGGATAATAATTGTTATCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTCTGAAAGTCTTGCTAGAAGCAAGTTTCAAAAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACACGCTACCTACTGCATAACCCAGATACCCTAAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCTCTTTATGAAGGGGAATCGGGCATCTTAATCAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTTCCGTCCTCTACTGACTGTTTAAAAGTGTCACTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTGGAACGACCGATTACCTCTCTCTCATGAAACCTTACGGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCCACTGATAACGATAGAATTAATATCATCTAATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAGCAATGGCTTTAATATGTGGGCATTCAAGCCGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGCGATCGCATGGCTGATCGTCTAAATCGGACTATTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTGCCCATCAAACATTGTTTGCTGGCGGTTTTATTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCTCAGAATAATGTGGCGGGTGCGGTCAATCTTCTTCAACGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTGATAGTCTGATCCTGGTACAATATCATTAGTCACGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTGACTAACGTGATTGCGTTAGGCAATGTCCCTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACT

>CP011304|22|21|3601305-3606945|CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAATTCAGGGTATTTTGGCTTAAATCCCCAAAATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGGGTGTAAAGAGTCGATACATAGCACATATCCC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACGGTTCAACCGACCTAAAACAACTATTAGCAGGGG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTTTCGGCTATTTTTAGCCCAATTCTGTAGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGTGGAATTAATGCTTAAAAATACTGCTGAATTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGGTAACTGACTAGGGACGGTATCAGGCGAATTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGGAACACTCAAGGATGCCCTAATCTCGTTGTTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TATTTCTAGAGATTTTAGGGTAATTTCTAGGATCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACCCCGCAGCACTCGGATCGATTTACGATTACCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTGTATCGTGCCGTCGATTTCATCCCCATAGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCCGTTGCCAGTCAGGTCTGTCGCGCCTGAAACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AATCAGCAAAGTGTTAAGGCTAGAATGGCGCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTGTTTTATTTGGTATCCACTCGATAATATCGTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTCTTTTTCTTTCGATTGGGGCCGGGAGTGTCTAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCGGGACGGACGGTTATCTACTCAAGCTATCTAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGATCGCCGCGTCGATCTTTTCCTCGAAGTTGGGC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGGATCCGAGTCGGTACGACTGCCAGAAAACTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGTGAGGGTCATCCCTACTACGCGCCCGTTAAGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGGGAAAATACCATTATGTTTGGTGATGAAGTCGATGG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTGATACTGCAATTATACCTATTTGTGATTAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTATAGACGTTCCGCGAATACTACTTTAGCCCGTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAAGTCCATCAACACATATATGTGTTGATTTTCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAAAGGCCAGGATTTTACCCTATCTGTACTCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACTTTATACAAGATACTTATACATACTTTATACAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGAGGGTCGCTGGTAATATAAAATAAATCCGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATAATTTAGAAGACTCGATCGATATCCAATCGCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATCTAACTGTGACACTTTGAGAATTGGCACTCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGAATGATGATGCTTCTTTTCTGTTTTTAGCCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CAGGTCTAATAATTCAAGCCCTGTCTCGTTAAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAAAAAGGGGTGAACCCGAAGGTAACTCGTGGGATTTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAACCTACTCTTTCCATATTTCTTCTCAAGCTGGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGAATTTTTTCGAGATTGGGAGAAATAGGAAGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTCCTCTGATGAGGAAGCGGTGGTTTTTTATGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCAGGATCAAAAGAATTGGGATTAAGATGTAAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATCAATCAAGAAACTCAAGAAAGCAATCAAGAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGGTGAGATGCTGAAAAATAAACCCGTCTCTATCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTGTTCCCGTTGCCGGTCAAGTCTTTTGCCCCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTGCTAATTTAGCGACTCCTTTAAATGGTATCGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CGGTAGCAATTAGAACTTTACTAGAATCCTCTTTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CAGTACACCGGCGATTATATCATTTACAGAATTGTC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGTACAAATAAAAGATTATGTAACTTTTATTAGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CGTTTTTAACGGTTTTGGGTTTCGTATCCTGATCGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAAAAAACCATTATTTAGAAGCAAGAAAAAATGCCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTTTACCAGACCGGCATAATTCAAGGAATTGGC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTGGGTGCGATACCCGTATCCTTGATAAATCGGTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TACCCTGGAATCATCGGGATTTGAAATCAAAGGCGG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GGTTCAACCGACCTAAAACAACTATTAGCAGGGG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGGATAGTTTACATCGCTTTTATCTATCAGAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATGGTGTTTTTTGTAGTCCATATTTTGATATTTCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAAAAAGAATTTGAGAGAAATAAGAGAAGATTTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTATCAGAAAAACTGTTTTATCTGTTGCCACTAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGTATAGTGTCAAGAGTTTTATTCTAAGTAGTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTAATACTATCTTCTCTATTTCTTTTTGAATTTTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTGTTTTTTGCTTGCCAGACCTTAATGCAACTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTCATGGCACGTCAAACTATTTATTAAGCAATGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTATTAGATTTTTTTTGTGCTATCATAGTAGAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTCGCTGGTTTCCTTTAGTTTTTTGATGTTTTCC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCCCCCTTCCCCCTCCGGCCCGACCGGCGATCGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGCATTAAAGGGGGATAAGGTTATCCCCCCAGCGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATGGCGCGGCCGATGATGCTTTTTCCTTCCCCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAACATAAAATTCCCATCGGTTCCATCTTCTACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TATTCCCGTCGCTATGTGATTAAGAACAGTCCCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AATCAGGAAACTGTAGAGACTGACTCAATAGATG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGAAAAAGAATTTGAGAGAAATAAAAGAAGATTTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGCATTGACTCGATTTGTTCATACTTAAAATCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTTGATATTGAAAATAAGGATAATAATTGTTATCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTCTGAAAGTCTTGCTAGAAGCAAGTTTCAAAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACGCTACCTACTGCATAACCCAGATACCCTAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCTCTTTATGAAGGGGAATCGGGCATCTTAATCAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTCCGTCCTCTACTGACTGTTTAAAAGTGTCACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGGAACGACCGATTACCTCTCTCTCATGAAACCTTACGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCCACTGATAACGATAGAATTAATATCATCTAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGCAATGGCTTTAATATGTGGGCATTCAAGCCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCGATCGCATGGCTGATCGTCTAAATCGGACTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCCCATCAAACATTGTTTGCTGGCGGTTTTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCTCAGAATAATGTGGCGGGTGCGGTCAATCTTCTTCAAC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGATAGTCTGATCCTGGTACAATATCATTAGTCAC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTGACTAACGTGATTGCGTTAGGCAATGTCCCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACT

>CP011304|22|2|3601305-3606944|CRT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAATTCAGGGTATTTTGGCTTAAATCCCCAAAATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGGGTGTAAAGAGTCGATACATAGCACATATCCC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACGGTTCAACCGACCTAAAACAACTATTAGCAGGGG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTTTCGGCTATTTTTAGCCCAATTCTGTAGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGTGGAATTAATGCTTAAAAATACTGCTGAATTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGGTAACTGACTAGGGACGGTATCAGGCGAATTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGGAACACTCAAGGATGCCCTAATCTCGTTGTTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TATTTCTAGAGATTTTAGGGTAATTTCTAGGATCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACCCCGCAGCACTCGGATCGATTTACGATTACCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTGTATCGTGCCGTCGATTTCATCCCCATAGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCCGTTGCCAGTCAGGTCTGTCGCGCCTGAAACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AATCAGCAAAGTGTTAAGGCTAGAATGGCGCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTGTTTTATTTGGTATCCACTCGATAATATCGTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTCTTTTTCTTTCGATTGGGGCCGGGAGTGTCTAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCGGGACGGACGGTTATCTACTCAAGCTATCTAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGATCGCCGCGTCGATCTTTTCCTCGAAGTTGGGC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGGATCCGAGTCGGTACGACTGCCAGAAAACTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGTGAGGGTCATCCCTACTACGCGCCCGTTAAGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGGGAAAATACCATTATGTTTGGTGATGAAGTCGATGG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTGATACTGCAATTATACCTATTTGTGATTAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTATAGACGTTCCGCGAATACTACTTTAGCCCGTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAAGTCCATCAACACATATATGTGTTGATTTTCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAAAGGCCAGGATTTTACCCTATCTGTACTCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACTTTATACAAGATACTTATACATACTTTATACAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGAGGGTCGCTGGTAATATAAAATAAATCCGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATAATTTAGAAGACTCGATCGATATCCAATCGCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATCTAACTGTGACACTTTGAGAATTGGCACTCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGAATGATGATGCTTCTTTTCTGTTTTTAGCCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CAGGTCTAATAATTCAAGCCCTGTCTCGTTAAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAAAAAGGGGTGAACCCGAAGGTAACTCGTGGGATTTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAACCTACTCTTTCCATATTTCTTCTCAAGCTGGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGAATTTTTTCGAGATTGGGAGAAATAGGAAGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTCCTCTGATGAGGAAGCGGTGGTTTTTTATGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCAGGATCAAAAGAATTGGGATTAAGATGTAAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATCAATCAAGAAACTCAAGAAAGCAATCAAGAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGGTGAGATGCTGAAAAATAAACCCGTCTCTATCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTGTTCCCGTTGCCGGTCAAGTCTTTTGCCCCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTGCTAATTTAGCGACTCCTTTAAATGGTATCGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CGGTAGCAATTAGAACTTTACTAGAATCCTCTTTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CAGTACACCGGCGATTATATCATTTACAGAATTGTC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGTACAAATAAAAGATTATGTAACTTTTATTAGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CGTTTTTAACGGTTTTGGGTTTCGTATCCTGATCGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAAAAAACCATTATTTAGAAGCAAGAAAAAATGCCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTTTACCAGACCGGCATAATTCAAGGAATTGGC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTGGGTGCGATACCCGTATCCTTGATAAATCGGTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TACCCTGGAATCATCGGGATTTGAAATCAAAGGCGG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GGTTCAACCGACCTAAAACAACTATTAGCAGGGG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGGATAGTTTACATCGCTTTTATCTATCAGAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATGGTGTTTTTTGTAGTCCATATTTTGATATTTCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAAAAAGAATTTGAGAGAAATAAGAGAAGATTTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTATCAGAAAAACTGTTTTATCTGTTGCCACTAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGTATAGTGTCAAGAGTTTTATTCTAAGTAGTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTAATACTATCTTCTCTATTTCTTTTTGAATTTTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTGTTTTTTGCTTGCCAGACCTTAATGCAACTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTCATGGCACGTCAAACTATTTATTAAGCAATGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTATTAGATTTTTTTTGTGCTATCATAGTAGAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTCGCTGGTTTCCTTTAGTTTTTTGATGTTTTCC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCCCCCTTCCCCCTCCGGCCCGACCGGCGATCGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGCATTAAAGGGGGATAAGGTTATCCCCCCAGCGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATGGCGCGGCCGATGATGCTTTTTCCTTCCCCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAACATAAAATTCCCATCGGTTCCATCTTCTACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TATTCCCGTCGCTATGTGATTAAGAACAGTCCCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AATCAGGAAACTGTAGAGACTGACTCAATAGATG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGAAAAAGAATTTGAGAGAAATAAAAGAAGATTTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGCATTGACTCGATTTGTTCATACTTAAAATCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTTGATATTGAAAATAAGGATAATAATTGTTATCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTCTGAAAGTCTTGCTAGAAGCAAGTTTCAAAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACGCTACCTACTGCATAACCCAGATACCCTAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCTCTTTATGAAGGGGAATCGGGCATCTTAATCAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTCCGTCCTCTACTGACTGTTTAAAAGTGTCACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGGAACGACCGATTACCTCTCTCTCATGAAACCTTACGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCCACTGATAACGATAGAATTAATATCATCTAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGCAATGGCTTTAATATGTGGGCATTCAAGCCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCGATCGCATGGCTGATCGTCTAAATCGGACTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCCCATCAAACATTGTTTGCTGGCGGTTTTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCTCAGAATAATGTGGCGGGTGCGGTCAATCTTCTTCAAC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGATAGTCTGATCCTGGTACAATATCATTAGTCAC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTGACTAACGTGATTGCGTTAGGCAATGTCCCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

>CP011304|22|3|3605035-3606944|PILER-CR
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTAATACTATCTTCTCTATTTCTTTTTGAATTTTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTGTTTTTTGCTTGCCAGACCTTAATGCAACTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTCATGGCACGTCAAACTATTTATTAAGCAATGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTATTAGATTTTTTTTGTGCTATCATAGTAGAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTCGCTGGTTTCCTTTAGTTTTTTGATGTTTTCC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCCCCCTTCCCCCTCCGGCCCGACCGGCGATCGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGCATTAAAGGGGGATAAGGTTATCCCCCCAGCGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATGGCGCGGCCGATGATGCTTTTTCCTTCCCCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAACATAAAATTCCCATCGGTTCCATCTTCTACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TATTCCCGTCGCTATGTGATTAAGAACAGTCCCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AATCAGGAAACTGTAGAGACTGACTCAATAGATG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGAAAAAGAATTTGAGAGAAATAAAAGAAGATTTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGCATTGACTCGATTTGTTCATACTTAAAATCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTTGATATTGAAAATAAGGATAATAATTGTTATCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTCTGAAAGTCTTGCTAGAAGCAAGTTTCAAAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACGCTACCTACTGCATAACCCAGATACCCTAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCTCTTTATGAAGGGGAATCGGGCATCTTAATCAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTCCGTCCTCTACTGACTGTTTAAAAGTGTCACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGGAACGACCGATTACCTCTCTCTCATGAAACCTTACGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCCACTGATAACGATAGAATTAATATCATCTAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGCAATGGCTTTAATATGTGGGCATTCAAGCCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCGATCGCATGGCTGATCGTCTAAATCGGACTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCCCATCAAACATTGTTTGCTGGCGGTTTTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCTCAGAATAATGTGGCGGGTGCGGTCAATCTTCTTCAAC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGATAGTCTGATCCTGGTACAATATCATTAGTCAC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTGACTAACGTGATTGCGTTAGGCAATGTCCCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE65992.1\|3612814_3613087_-\|CRISPR-associated-protein-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP011304.1\|AKE65995.1\|3614705_3615539_-\|CRISPR-repeat-RNA-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
CP011304.1\|AKE65981.1\|3592922_3593405_+\|Cytochrome-c,-class-I	unknown	unknown	gnl\|CDD\|379187
CP011304.1\|AKE65996.1\|3615538_3616105_-\|Protein-of-unknown-function-DUF820	unknown	unknown	gnl\|CDD\|99749
CP011304.1\|AKE65994.1\|3614109_3614703_-\|CRISPR-associated-RecB-family-exonuclease-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
CP011304.1\|AKE65991.1\|3611751_3611886_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65993.1\|3613099_3614104_-\|CRISPR-associated-protein-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
CP011304.1\|AKE65979.1\|3591107_3591788_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227688
CP011304.1\|AKE65986.1\|3599063_3599558_+\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|315923
CP011304.1\|AKE65983.1\|3595915_3598081_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226428
CP011304.1\|AKE65990.1\|3609111_3610608_+\|transposase	unknown	unknown	gnl\|CDD\|290319
CP011304.1\|AKE65980.1\|3591832_3592894_-\|Putative-transport-system-permease-protein	unknown	unknown	gnl\|CDD\|366370
CP011304.1\|AKE65987.1\|3599881_3601108_-\|Transposase	unknown	unknown	gnl\|CDD\|376574
CP011304.1\|AKE65985.1\|3598665_3599109_+\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|225949
CP011304.1\|AKE65982.1\|3593744_3595898_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226428
CP011304.1\|AKE65978.1\|3590019_3590835_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378597
CP011304.1\|AKE65998.1\|3618873_3619563_-\|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
CP011304.1\|AKE65989.1\|3607003_3608152_-\|Mobile-element-protein	unknown	unknown	unknown
CP011304.1\|AKE65984.1\|3598093_3598627_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65997.1\|3616145_3618881_-\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE65992.1\|3612814_3613087_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.25525e-37
CP011304.1\|AKE65995.1\|3614705_3615539_-\|CRISPR-repeat-RNA-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.28864e-45
CP011304.1\|AKE65981.1\|3592922_3593405_+\|Cytochrome-c,-class-I	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	3.50185e-08
CP011304.1\|AKE65994.1\|3614109_3614703_-\|CRISPR-associated-RecB-family-exonuclease-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.35866e-54
CP011304.1\|AKE65993.1\|3613099_3614104_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	2.59523e-141
CP011304.1\|AKE65979.1\|3591107_3591788_+\|hypothetical-protein	gnl\|CDD\|227688	COG5401, COG5401, Spore germination protein [General function prediction only].	9.43183e-25
CP011304.1\|AKE65986.1\|3599063_3599558_+\|Mobile-element-protein	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.32222e-41
CP011304.1\|AKE65983.1\|3595915_3598081_+\|hypothetical-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.38343e-162
CP011304.1\|AKE65990.1\|3609111_3610608_+\|transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.0941e-34
CP011304.1\|AKE65980.1\|3591832_3592894_-\|Putative-transport-system-permease-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	4.78128e-37
CP011304.1\|AKE65987.1\|3599881_3601108_-\|Transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	4.17478e-80
CP011304.1\|AKE65985.1\|3598665_3599109_+\|Mobile-element-protein	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.76321e-21
CP011304.1\|AKE65982.1\|3593744_3595898_+\|hypothetical-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.2671e-152
CP011304.1\|AKE65978.1\|3590019_3590835_+\|hypothetical-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	1.67573e-22
CP011304.1\|AKE65996.1\|3615538_3616105_-\|Protein-of-unknown-function-DUF820	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.55985e-27
CP011304.1\|AKE65997.1\|3616145_3618881_-\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.32697e-43

>CP011304.1|AKE65987.1|3599881_3601108_-|Transposase
MPSNPQLKLMTELLHLEGVVVTNYQIITDIGIVLHLENMSRESQCIHCGSKTEKVHQNNELTIRDLPFGEQALYLRINRRQMRCEKCGKKFTEELNYLPKKRTYTDRFRKKIVAEVLNSDLKNTAERNGVSEQEIETMLKDLGEELITAKPQGLKKLGIDEIAMIKGKGNYYAVLVNIDTGKIIGLGEKRTEEALTEYLKHWGEEVLSQIEEVSIDLWIGYKNVAEKLMPQAQIVGDRFHVMKQVNNELDEARKEVKREAAKIKNKKNKENILAGIAKSKYALLKNEGDLVEKERKKLEEIYKVSPKLGEMHKLKEEFREVFEKNTEGNEGLFALSDWLKKAMAYFPKSCQTIRRWIDEITAYFDNRTTQGTVEGINNKLKVIKRRGYGFRNFKNFSLRCLLNWHFAS
>CP011304.1|AKE65986.1|3599063_3599558_+|Mobile-element-protein
MEYWSQVREIEASKLIFIDESGVNLALLRLYARALIGRRDRGRKPQKRGRNISIISAISLEKVVASVNIYGAVDAVTFEGFILKEVLPKIKEGDCLLMDNAKIHLGEMVREIIEQEKARLIYLPPYSPEFSPIENFWSKVKAILRKLKARTYKDLIEGIELAML
>CP011304.1|AKE65985.1|3598665_3599109_+|Mobile-element-protein
MRPYSVDFRQKIIDVWKKEKISIRGLAQRFDVAKSFIQKLLKQHKETGDIRPRPQGGSPPTKLNSEQLIILIEIIESNNDATLEELSDLLYEKTQVKVSRATLGRLTQKLNYSFKKKHYTRRKKKVTGYSKKEWNTGLKFGKLRHQN
>CP011304.1|AKE65984.1|3598093_3598627_+|hypothetical-protein
MQLHQDIQPHLNDNNYQLVLQFYEQLIENNSPVIEDYFYLGLAYLLQDREEDAQATWLLVLSQAAESELSGWIKTLTQILDAEATRQENSQRLETSYLIRLHLQNLNPSFLNNLLHLMELEIQFQIFAMEKCHDWCVFELLENTATAAINLDLLLGVTEKVLIYPSTYSTSWSYEVQ
>CP011304.1|AKE65983.1|3595915_3598081_+|hypothetical-protein
MSWQNEVKTALENNQYDIVSQFYEELIERETTEISHYWYLGLAYLLEDREEDAQATWLLVLSQAAESELSGWIKTLTQILDAEATRQENSQRLETSYLIRLHLQNLNPSFLNNLLHLMELEIQFQIFAMEKCHDWCVFELLENTATAAINLDLLLRVTEKVLIYPCTDTIHFLELAALHINNPEIIATKVISAIVNYAYQQKQSVFAINLVELCLRFLPEDLYLQNSLFNLYKTTTIDYKKSLEIADNFYKSCQTTTEKLLGISLVIAISQAKGDWGNLPKFIDELIQLIERQINAKQFNARPFIIDSILGVTICLPYYQDNPKINRYLQSKLAEIFQADVRTRYNYIAPVSSPKSPARKIKIGYIAYTLRRHSVGWLSRWLFHYHNRDKFEIYTYFVNQAADEITEKWFINNSDYSYNLPAKIEQITAQIRQDNLDILVDLDSLTNNTTCLVIALKPAPIQVTWLGLDASGIPAIDYFIADNYVLPENAEEIYSEKIIRLPNSYLSVDGFEVGVPTRRRTDLNIPDDAIIYLTVQSGLKRTLNMIYLQLQILQQVPNSYLLIKGFADKETIRELFLKSADELGISQDRLRFLPNDFNEETHRANLGIADIVLDTYPYSGATTTLETLWMGIPLVTRVGEQFAARNSYTFMKNAGISQGIAWSDEEYVQWGIKLGLDKNLREEVRWKLRKSRHTSPLWNSKQFTRNLETAYQQMWNIYCQS
>CP011304.1|AKE65982.1|3593744_3595898_+|hypothetical-protein
MSWHSQVEPAIIQGDFWQVSQFYEELIEREPLEISHYWYLGLAYLLEAREEEAQTTWLFVLSQGDEQEMNSWTVDLVNILDGEARRQVEVKNWQLSWVIRQHIYQINPDNLENLLYLVLLEIKLEYFYPQKLKDWQIVDLINSDKLENFDINLLLHTIYKLLDWPAQEVLDIIITLLKIDSQQSAILEIIEQHIEKIYYTDKTNAVILTLSCLDIIPDHLVLLHKIHQYYIDTGNFELALETANKIKNLSNDKAAKLYGIYLLLYTEILAGNWLNIDNKTQEYYQAIQNNLERGQCPMSNQAEVISITSPLAYLKDDLVGNRWLTNQLAKLFQEAVRKRFNQVTIESQKPKDVNKKLNIGYIAHTLRRHSVGFLSRWLIHYHQRDNFNIHLYLVNQVEDDITEQWFKNKVDKYNNLPANPQIIAEKINQDNIDILVDLDSITKDNTCRVMALKPAPIQITWLGLDATGIPAIDYFLVDNLVLEKNAQEFYQEKLWRLPNCYLAVDGFEIGIPTLTRQDLNIPADAITYLTLQVGLKRNPATIRLQMQIIKAVPNSYLLIKGAGSEKLINDLFISIAKEEGIDENRLRFLSGVANEEIHRANLQIADVVLDTYPYSGATTTLETLWMGIPVVTKVGQQWSSRNSYTFMTHGGISEGIAWSDEEYVQWGIKLGKDEQLRRKVIAKLDESRQTSPIWNARQFTKDVENAYRQMWQIYCES
>CP011304.1|AKE65981.1|3592922_3593405_+|Cytochrome-c,-class-I
MSYIILHLPISSSGGGILGQKVAKCKEKLIFPSAACVNSQLVKPKFGLYRFLMVIIVVLFLISTFLITFHLAKMSDPYIKEVLSRQGNVSRGYEIFQINCAACHGQFADGIVGPSLEDVSRRKSRISLIEQVISGKTPPMPKFQPDTQAMADLLVYLENL
>CP011304.1|AKE65980.1|3591832_3592894_-|Putative-transport-system-permease-protein
MNLLTRLEDWPYIILPITIVLSFLLLGWLVEQRVVSQLLSIAREKNLRFSEGVLRSLRGLSILWFGLLGLNIALSLPNLPLFPSLILLSQKFLLVAFLASATWAIAQLSVEILRVYTTGDDGISSLTSLFEFLAKVLIFSCGFLLILSSVGISITPLLTAFGIGGVSLGLALQNTLANLMSGINIITSKKVRPGDYIELRTGEAGYVRDVDLRCTVVEEITNNLLVIPNAQIISSSFRNYSLPDHSLLVPVEVGISYDSDLEKVEKITREVIQEITQLLQPNLGDYQPLIRYGKFDYYSILLTVYLKVVEEEFFQHLTIKHEFIKLLHRRYQQEGIKIPYPIFFPYPPTNPPS
>CP011304.1|AKE65979.1|3591107_3591788_+|hypothetical-protein
MPSSRSSDKISLPWIIGIGLALFTAGGATAWFAVHHLSSSQKTSENPIESPSPVPISKSPIVEPVSPGPVKTSPTATPAAIPVRETRQVYWLKVTDTGNQLVSQKITVQKADSRDRELTAVLKILLAGPSNSKDMTTIPPGTKLLDLKVDKTGIKINLSREFGNDDGPDMLIGRLAQIIYTTTAEDPNAKVWIQVEGKPLELLGEGHGLEVAQPMTRKFFEENYQL
>CP011304.1|AKE65978.1|3590019_3590835_+|hypothetical-protein
MEWLTITLASVLTLLTPAGAIIDRVLADILRSQVQKVEQLAVRVDNTPNYQALQGKIDRVRISARGIYPLADVRIEKIELETEPISLDLRRLQQKNGNLAASLRRPAAGALHLVLTETNVNQALQSAAVKGPIQTLINNLIPSREEFGITKYQFSQANFNFLNNNRVALRLQLETQRLDEPAASLDLSLEVGFKLVQGRKIELIDPTATLNGRRLSSRLLKGFAEGISTQLDLKNFEKQGIIARLLQLQIDDDKLSIAAFGRIEPRSGNPN
>CP011304.1|AKE65989.1|3607003_3608152_-|Mobile-element-protein
MISELYQKVLENELGRARYLLLLMIVGTLQILKQAKLEILAEALPIPILFESRRKKLKRFLKLEILNIEKIWFLCLKEMLKQQQRFTTKGLAYIAIDRTSWGAINILMVSLIYDKRAIPIYWEILDKKGSSNLEEQQRVLEKTLTVLSGHKIVVLGDREFCSVSLGKWLQKQSLYFCLRQKKSTNVKTKEGIYQEMRELGLSPGTQLFLNDVNITKEQGFGQFNLAGKWKKTYGGFQTKEPWYILTNFVDLETAIIAYQKRFDIEEMFRDFKSGGYSLEGSQLAPQYLSKLIIVIAIAYTSATLQGKKIKDMGIQKYVTRPEKRYKGQRRHSSFYVGQHLYHWLQLHQMFQKNIEELMQISRYRLKDYIKGQRAISLALSTF
>CP011304.1|AKE65990.1|3609111_3610608_+|transposase
MYRKSELPSTPPENFELPFEGKLSQDNRWVIMANLIPWSEFEAEYASLFSEEMGTPAKTFRTALGALIIKEKLGTSDRETVEQIKENPYLQYFLGFSSYSNEPRFEASMLVHFRERITLELINKVNRFMVKNSREIKEEENTEKKLESETQSQPENRGKLILDASCAPADISYPTDLNLLNQGRKQTEKIIDILYETLKGKLVQKPRTYRLLARKSYLEVAKKRKPTVKQRRKALKRQLQYLKRNLDHIEQLLAEGASLQSLKKRDYKLLLVVTEVYRQQLWMYQNNKQSIEDRIVSLTQPHIRPIVRGKAGKPVEFGAKFSASCIDGYIFLDRISWDNFNESGDLKAQIEAYYDYTGYYPESVHVDKIYRTRENRAWCKERGIRISGPPLGRPAKNVSKEQKKQATDDERIRNCIEGKFGQGKRRFSLGKVMAKLPHTSFSAIAITFLVMNLSNLLRQVFWAFLCLKWKNSTFSRSMIRISYNLKINQQLKLMLVAK
>CP011304.1|AKE65991.1|3611751_3611886_+|hypothetical-protein
MFQSLIGFKINWNALDDLLQSLEGLFQSLIGFKINWNAVKAQPC
>CP011304.1|AKE65992.1|3612814_3613087_-|CRISPR-associated-protein-Cas2
MYFVISYDISDDKRRTKIHNTLKSYGQRVQYSVFECDLTDTQYAKLRGRLSKLIKPDTDSIRFYFLCACCRGKVERIGGELPRDNTIFFV
>CP011304.1|AKE65993.1|3613099_3614104_-|CRISPR-associated-protein-Cas1
MGTVYVTREDAFLGKNDERLTVKASKETILDVPLLNVDGVVLFGRGSLSPALVIELLERHIPLSFVTSTGRYLGRLEPEMTKNIFVRRAQWQAAGDSPKAIHLVRGFVRGKLKNYRNILLRRQRDRKELDLQTAIACLEAAIGSIETTSAIDSLRGLEGAGSAAYFSCFDSLILGDTFTFASRNRRPPRDPVNSLLSLGYALLRHDVQSAINLVGFDPYLGYLHYQRYGRPSLALDLMEEFRAIVVDAVVLNGVNHPYLTPEHFTTEPLSGAVSLTREGLQIFLRLYEQKKQSKFKHPVMSKQCTYQEAFEIQARLMAKYLMDETDKYPPLILK
>CP011304.1|AKE65994.1|3614109_3614703_-|CRISPR-associated-RecB-family-exonuclease-Cas4
MDESDYIPIAALNHYAYCPHRCWRMFVAGEFLNNSYTIEGTNLHERVHTVGAGNREEIWQIRAIWLKSDNYRLIGKADLIESHDGEFIPVEYKRGSKGEWDNDELQVCAQAICLEEMTGKRLDTGYIYYASSHQRQPVAIDLALRQRAIATIRAVETLIQTGKMPPAVYSPRCKGCSLFDRCLPRLTEKVQRYQEED
>CP011304.1|AKE65995.1|3614705_3615539_-|CRISPR-repeat-RNA-endoribonuclease-Cas6
MPYSLVLNLTPRSPIYPNFLTGRHLHALFLTLVSSVDQELGNILHASDADKAFTLSPLQMQSRRKTINFPRWRHEREIAPETPCWWRISLLDDRLFGKLTPLWLNLNPKQPWHLGSADLVITSVLATPQSVQPWANSCTYQYLYENASETNREFDFLFATPVTFRQGKFDSALPTRELVFNSLLSRWNRYSGISFDSIALESIFPSFFDIQTKLTDEAYKNQSIGCVGEIHYRLLGEVEPAKIKAINALADFALYAGVGRKTTMGMGMTRRISKDKR
>CP011304.1|AKE65996.1|3615538_3616105_-|Protein-of-unknown-function-DUF820
MTLISSKSLTLPEFLSLTPPDGDITYELVDGEAIPKMSPKFFHSRLTGALFLLLDRWNQGRGEVGIEWAIVLSKNDRDWCPVPDLLYISPERLGDITLTDEACPVPPELVIEIISPEQSFSSLSEKAVDYLKAGVSRVWIVDPQAKQITIFYPDAPPAIKKGDDEMSDILLPDLTLTPGQIFAKARLS
>CP011304.1|AKE65997.1|3616145_3618881_-|CRISPR-associated-helicase-Cas3
MSKSNPQPFFKFGRVFFPGEPTIAPDKILFQPLGNHVGNVRQLARKWQDGNFSLERVIEGINLHDKAKPQTFKIRVETNKQGEFTKYTYSFKGHRFKVDNPQNLWVQALARGHHDYSTKEIIKDTYQLKKDTEYQKIFSKDPLQYAKELYILEMCDQIEAELACRVIGDDEQAKSRTFMDFTITKGTSEDSNHRVFYLDPYPFKEPTITLNFRSWTYNLSDEDKNQLQQLHENRKDKELGSKLNTLVKEWWKKNEHTISEDRAITAIIKPDNSNTYSPSEKSENAIFWWYEELANFQPNPMQEEVFQTMVKNQHPAFILKAPTGAGKFEAIIIPFLAMLSTKEDRPRLIIPLPARSLLEDQKQRCDKYLKQFSLLHKGREVSLVIDTGTEMNRYVYLDGEVKSSNNSRRHLYKGDIILTTIDKFIYRYFGYGDKQKSFIFPYRIYHGNTLICFDEAHTYDDISFTNFCSLVKALYEAGCSLVLMTATLSQNHLERFDYLADNMIDYIDVQDNLEKLNNFYQQILKQDYSNLKQFEFYEEPTNLQQKLTSIALEEWNSNPSHRIIVSVETVKDAIAIYEKIKQTLNIKFSEKKEFLFLYHGRLSDIPKTSHYSRTNLYQRLKERDENDQAYILVTTSAIEVGCDLNSTRLITQLCNPESLIQRAGRCNRKGNVEDAKIIVIGNNIPEFVNTLSEAELENYKTILKGLHDQNFDPKAIMNCVSTKQTIDDYRVVELFSLLQDYVYNADLTCQSAHEKGLVITRSWTPSVTLVYDDGKQGDSLEKIVKESPQIQVSIDRLILKKNNEGNYTNQYANVSVYEWIYDKEETRYKLEPLKYWGCAYSKELVIKVCAVQEGAISDSFEPYSYDHELGFKDLPGVFIKWRSNGYQERLQYNPTKDRSVVINYTSALTQD
>CP011304.1|AKE65998.1|3618873_3619563_-|hypothetical-protein
MLSEGLDIPETSINKENPPYFTLPRQYIALGAYPVLDKWSGVHRTHRKGTRSFNHDVFSRLYIDGDRENFQLHTWEYFIAEELIGYVVSESKSSLEAFSNLQGVGCKIGKEGFAVIDEVSESIRLQRKILSAHPSTVVPMEALIQRNPCINRCDIYNLYRHEWSADQTQDEDKGLFDTERSPINGFIPFVAAYYPEKAHPLPTLDFYTDGNLQIPVALVELLQRESINV

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Crispr_ID: CP011304_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_23

3608265-3608953

Unclear

I-D,II-B

Consensus_repeat	Method
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	PILER-CR
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CRT

9 spacers

cas2,cas1,cas4,cas6,cas3,cas5,cas7

The CRISPR arrays of CP011304_23

>merge|CP011304|23|3608265-3608953|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCCTTGCCCACTGACGCACAAAAGCAATTAAACAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTTCGCTTGATTGGTACTCCAGACAAGGAAAATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTTGGTGTTGCAAGAGTGTCCAGATTTGGTACGCCGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTGGTATGTGAGCATTACCCATGATCAGGATTCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAGAACAAAATATTGTCTATTCTATTACGAGAATAGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAGTGCGATTGTGGTGGTCGGTGTTGCTGCAGTGTGGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTAATGTCAATATCTCTGGAAGTTGGCAAAATAAGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCTTTTTCGCCATTGTCACGTCTTACACAGTCGATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTTATCAGTAATTAACCCATTTAGGAGTACCAAAAAATGACTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

>CP011304|23|4|3608265-3608953|PILER-CR
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTTGCCCACTGACGCACAAAAGCAATTAAACAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTCGCTTGATTGGTACTCCAGACAAGGAAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTGGTGTTGCAAGAGTGTCCAGATTTGGTACGCCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTGGTATGTGAGCATTACCCATGATCAGGATTC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGAACAAAATATTGTCTATTCTATTACGAGAATAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGTGCGATTGTGGTGGTCGGTGTTGCTGCAGTGTGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAATGTCAATATCTCTGGAAGTTGGCAAAATAAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTTTTCGCCATTGTCACGTCTTACACAGTCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTATCAGTAATTAACCCATTTAGGAGTACCAAAAAATGACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

>CP011304|23|22|3608265-3608953|CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTTGCCCACTGACGCACAAAAGCAATTAAACAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTCGCTTGATTGGTACTCCAGACAAGGAAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTGGTGTTGCAAGAGTGTCCAGATTTGGTACGCCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTGGTATGTGAGCATTACCCATGATCAGGATTC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGAACAAAATATTGTCTATTCTATTACGAGAATAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGTGCGATTGTGGTGGTCGGTGTTGCTGCAGTGTGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAATGTCAATATCTCTGGAAGTTGGCAAAATAAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTTTTCGCCATTGTCACGTCTTACACAGTCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTATCAGTAATTAACCCATTTAGGAGTACCAAAAAATGACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

>CP011304|23|3|3608265-3608953|CRT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTTGCCCACTGACGCACAAAAGCAATTAAACAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTCGCTTGATTGGTACTCCAGACAAGGAAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTGGTGTTGCAAGAGTGTCCAGATTTGGTACGCCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTGGTATGTGAGCATTACCCATGATCAGGATTC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGAACAAAATATTGTCTATTCTATTACGAGAATAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGTGCGATTGTGGTGGTCGGTGTTGCTGCAGTGTGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAATGTCAATATCTCTGGAAGTTGGCAAAATAAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTTTTCGCCATTGTCACGTCTTACACAGTCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTATCAGTAATTAACCCATTTAGGAGTACCAAAAAATGACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE65992.1\|3612814_3613087_-\|CRISPR-associated-protein-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP011304.1\|AKE65995.1\|3614705_3615539_-\|CRISPR-repeat-RNA-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
CP011304.1\|AKE65981.1\|3592922_3593405_+\|Cytochrome-c,-class-I	unknown	unknown	gnl\|CDD\|379187
CP011304.1\|AKE65996.1\|3615538_3616105_-\|Protein-of-unknown-function-DUF820	unknown	unknown	gnl\|CDD\|99749
CP011304.1\|AKE65991.1\|3611751_3611886_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65993.1\|3613099_3614104_-\|CRISPR-associated-protein-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
CP011304.1\|AKE65986.1\|3599063_3599558_+\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|315923
CP011304.1\|AKE65983.1\|3595915_3598081_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226428
CP011304.1\|AKE65990.1\|3609111_3610608_+\|transposase	unknown	unknown	gnl\|CDD\|290319
CP011304.1\|AKE65999.1\|3619701_3620595_-\|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	unknown
CP011304.1\|AKE65980.1\|3591832_3592894_-\|Putative-transport-system-permease-protein	unknown	unknown	gnl\|CDD\|366370
CP011304.1\|AKE65987.1\|3599881_3601108_-\|Transposase	unknown	unknown	gnl\|CDD\|376574
CP011304.1\|AKE65985.1\|3598665_3599109_+\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|225949
CP011304.1\|AKE65994.1\|3614109_3614703_-\|CRISPR-associated-RecB-family-exonuclease-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
CP011304.1\|AKE65982.1\|3593744_3595898_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226428
CP011304.1\|AKE65988.1\|3603598_3603757_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65998.1\|3618873_3619563_-\|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
CP011304.1\|AKE65989.1\|3607003_3608152_-\|Mobile-element-protein	unknown	unknown	unknown
CP011304.1\|AKE65984.1\|3598093_3598627_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65997.1\|3616145_3618881_-\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE65992.1\|3612814_3613087_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.25525e-37
CP011304.1\|AKE65995.1\|3614705_3615539_-\|CRISPR-repeat-RNA-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.28864e-45
CP011304.1\|AKE65981.1\|3592922_3593405_+\|Cytochrome-c,-class-I	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	3.50185e-08
CP011304.1\|AKE65983.1\|3595915_3598081_+\|hypothetical-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.38343e-162
CP011304.1\|AKE65986.1\|3599063_3599558_+\|Mobile-element-protein	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.32222e-41
CP011304.1\|AKE65993.1\|3613099_3614104_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	2.59523e-141
CP011304.1\|AKE65990.1\|3609111_3610608_+\|transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.0941e-34
CP011304.1\|AKE65980.1\|3591832_3592894_-\|Putative-transport-system-permease-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	4.78128e-37
CP011304.1\|AKE65987.1\|3599881_3601108_-\|Transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	4.17478e-80
CP011304.1\|AKE65985.1\|3598665_3599109_+\|Mobile-element-protein	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.76321e-21
CP011304.1\|AKE65982.1\|3593744_3595898_+\|hypothetical-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.2671e-152
CP011304.1\|AKE65994.1\|3614109_3614703_-\|CRISPR-associated-RecB-family-exonuclease-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.35866e-54
CP011304.1\|AKE65996.1\|3615538_3616105_-\|Protein-of-unknown-function-DUF820	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.55985e-27
CP011304.1\|AKE65997.1\|3616145_3618881_-\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.32697e-43

>CP011304.1|AKE65989.1|3607003_3608152_-|Mobile-element-protein
MISELYQKVLENELGRARYLLLLMIVGTLQILKQAKLEILAEALPIPILFESRRKKLKRFLKLEILNIEKIWFLCLKEMLKQQQRFTTKGLAYIAIDRTSWGAINILMVSLIYDKRAIPIYWEILDKKGSSNLEEQQRVLEKTLTVLSGHKIVVLGDREFCSVSLGKWLQKQSLYFCLRQKKSTNVKTKEGIYQEMRELGLSPGTQLFLNDVNITKEQGFGQFNLAGKWKKTYGGFQTKEPWYILTNFVDLETAIIAYQKRFDIEEMFRDFKSGGYSLEGSQLAPQYLSKLIIVIAIAYTSATLQGKKIKDMGIQKYVTRPEKRYKGQRRHSSFYVGQHLYHWLQLHQMFQKNIEELMQISRYRLKDYIKGQRAISLALSTF
>CP011304.1|AKE65988.1|3603598_3603757_+|hypothetical-protein
MFQSLIGFKINWNVSSDEEAVVFYEFQSLIGFKINWNSGSKELGLRCKSFNP
>CP011304.1|AKE65987.1|3599881_3601108_-|Transposase
MPSNPQLKLMTELLHLEGVVVTNYQIITDIGIVLHLENMSRESQCIHCGSKTEKVHQNNELTIRDLPFGEQALYLRINRRQMRCEKCGKKFTEELNYLPKKRTYTDRFRKKIVAEVLNSDLKNTAERNGVSEQEIETMLKDLGEELITAKPQGLKKLGIDEIAMIKGKGNYYAVLVNIDTGKIIGLGEKRTEEALTEYLKHWGEEVLSQIEEVSIDLWIGYKNVAEKLMPQAQIVGDRFHVMKQVNNELDEARKEVKREAAKIKNKKNKENILAGIAKSKYALLKNEGDLVEKERKKLEEIYKVSPKLGEMHKLKEEFREVFEKNTEGNEGLFALSDWLKKAMAYFPKSCQTIRRWIDEITAYFDNRTTQGTVEGINNKLKVIKRRGYGFRNFKNFSLRCLLNWHFAS
>CP011304.1|AKE65986.1|3599063_3599558_+|Mobile-element-protein
MEYWSQVREIEASKLIFIDESGVNLALLRLYARALIGRRDRGRKPQKRGRNISIISAISLEKVVASVNIYGAVDAVTFEGFILKEVLPKIKEGDCLLMDNAKIHLGEMVREIIEQEKARLIYLPPYSPEFSPIENFWSKVKAILRKLKARTYKDLIEGIELAML
>CP011304.1|AKE65985.1|3598665_3599109_+|Mobile-element-protein
MRPYSVDFRQKIIDVWKKEKISIRGLAQRFDVAKSFIQKLLKQHKETGDIRPRPQGGSPPTKLNSEQLIILIEIIESNNDATLEELSDLLYEKTQVKVSRATLGRLTQKLNYSFKKKHYTRRKKKVTGYSKKEWNTGLKFGKLRHQN
>CP011304.1|AKE65984.1|3598093_3598627_+|hypothetical-protein
MQLHQDIQPHLNDNNYQLVLQFYEQLIENNSPVIEDYFYLGLAYLLQDREEDAQATWLLVLSQAAESELSGWIKTLTQILDAEATRQENSQRLETSYLIRLHLQNLNPSFLNNLLHLMELEIQFQIFAMEKCHDWCVFELLENTATAAINLDLLLGVTEKVLIYPSTYSTSWSYEVQ
>CP011304.1|AKE65983.1|3595915_3598081_+|hypothetical-protein
MSWQNEVKTALENNQYDIVSQFYEELIERETTEISHYWYLGLAYLLEDREEDAQATWLLVLSQAAESELSGWIKTLTQILDAEATRQENSQRLETSYLIRLHLQNLNPSFLNNLLHLMELEIQFQIFAMEKCHDWCVFELLENTATAAINLDLLLRVTEKVLIYPCTDTIHFLELAALHINNPEIIATKVISAIVNYAYQQKQSVFAINLVELCLRFLPEDLYLQNSLFNLYKTTTIDYKKSLEIADNFYKSCQTTTEKLLGISLVIAISQAKGDWGNLPKFIDELIQLIERQINAKQFNARPFIIDSILGVTICLPYYQDNPKINRYLQSKLAEIFQADVRTRYNYIAPVSSPKSPARKIKIGYIAYTLRRHSVGWLSRWLFHYHNRDKFEIYTYFVNQAADEITEKWFINNSDYSYNLPAKIEQITAQIRQDNLDILVDLDSLTNNTTCLVIALKPAPIQVTWLGLDASGIPAIDYFIADNYVLPENAEEIYSEKIIRLPNSYLSVDGFEVGVPTRRRTDLNIPDDAIIYLTVQSGLKRTLNMIYLQLQILQQVPNSYLLIKGFADKETIRELFLKSADELGISQDRLRFLPNDFNEETHRANLGIADIVLDTYPYSGATTTLETLWMGIPLVTRVGEQFAARNSYTFMKNAGISQGIAWSDEEYVQWGIKLGLDKNLREEVRWKLRKSRHTSPLWNSKQFTRNLETAYQQMWNIYCQS
>CP011304.1|AKE65982.1|3593744_3595898_+|hypothetical-protein
MSWHSQVEPAIIQGDFWQVSQFYEELIEREPLEISHYWYLGLAYLLEAREEEAQTTWLFVLSQGDEQEMNSWTVDLVNILDGEARRQVEVKNWQLSWVIRQHIYQINPDNLENLLYLVLLEIKLEYFYPQKLKDWQIVDLINSDKLENFDINLLLHTIYKLLDWPAQEVLDIIITLLKIDSQQSAILEIIEQHIEKIYYTDKTNAVILTLSCLDIIPDHLVLLHKIHQYYIDTGNFELALETANKIKNLSNDKAAKLYGIYLLLYTEILAGNWLNIDNKTQEYYQAIQNNLERGQCPMSNQAEVISITSPLAYLKDDLVGNRWLTNQLAKLFQEAVRKRFNQVTIESQKPKDVNKKLNIGYIAHTLRRHSVGFLSRWLIHYHQRDNFNIHLYLVNQVEDDITEQWFKNKVDKYNNLPANPQIIAEKINQDNIDILVDLDSITKDNTCRVMALKPAPIQITWLGLDATGIPAIDYFLVDNLVLEKNAQEFYQEKLWRLPNCYLAVDGFEIGIPTLTRQDLNIPADAITYLTLQVGLKRNPATIRLQMQIIKAVPNSYLLIKGAGSEKLINDLFISIAKEEGIDENRLRFLSGVANEEIHRANLQIADVVLDTYPYSGATTTLETLWMGIPVVTKVGQQWSSRNSYTFMTHGGISEGIAWSDEEYVQWGIKLGKDEQLRRKVIAKLDESRQTSPIWNARQFTKDVENAYRQMWQIYCES
>CP011304.1|AKE65981.1|3592922_3593405_+|Cytochrome-c,-class-I
MSYIILHLPISSSGGGILGQKVAKCKEKLIFPSAACVNSQLVKPKFGLYRFLMVIIVVLFLISTFLITFHLAKMSDPYIKEVLSRQGNVSRGYEIFQINCAACHGQFADGIVGPSLEDVSRRKSRISLIEQVISGKTPPMPKFQPDTQAMADLLVYLENL
>CP011304.1|AKE65980.1|3591832_3592894_-|Putative-transport-system-permease-protein
MNLLTRLEDWPYIILPITIVLSFLLLGWLVEQRVVSQLLSIAREKNLRFSEGVLRSLRGLSILWFGLLGLNIALSLPNLPLFPSLILLSQKFLLVAFLASATWAIAQLSVEILRVYTTGDDGISSLTSLFEFLAKVLIFSCGFLLILSSVGISITPLLTAFGIGGVSLGLALQNTLANLMSGINIITSKKVRPGDYIELRTGEAGYVRDVDLRCTVVEEITNNLLVIPNAQIISSSFRNYSLPDHSLLVPVEVGISYDSDLEKVEKITREVIQEITQLLQPNLGDYQPLIRYGKFDYYSILLTVYLKVVEEEFFQHLTIKHEFIKLLHRRYQQEGIKIPYPIFFPYPPTNPPS
>CP011304.1|AKE65990.1|3609111_3610608_+|transposase
MYRKSELPSTPPENFELPFEGKLSQDNRWVIMANLIPWSEFEAEYASLFSEEMGTPAKTFRTALGALIIKEKLGTSDRETVEQIKENPYLQYFLGFSSYSNEPRFEASMLVHFRERITLELINKVNRFMVKNSREIKEEENTEKKLESETQSQPENRGKLILDASCAPADISYPTDLNLLNQGRKQTEKIIDILYETLKGKLVQKPRTYRLLARKSYLEVAKKRKPTVKQRRKALKRQLQYLKRNLDHIEQLLAEGASLQSLKKRDYKLLLVVTEVYRQQLWMYQNNKQSIEDRIVSLTQPHIRPIVRGKAGKPVEFGAKFSASCIDGYIFLDRISWDNFNESGDLKAQIEAYYDYTGYYPESVHVDKIYRTRENRAWCKERGIRISGPPLGRPAKNVSKEQKKQATDDERIRNCIEGKFGQGKRRFSLGKVMAKLPHTSFSAIAITFLVMNLSNLLRQVFWAFLCLKWKNSTFSRSMIRISYNLKINQQLKLMLVAK
>CP011304.1|AKE65991.1|3611751_3611886_+|hypothetical-protein
MFQSLIGFKINWNALDDLLQSLEGLFQSLIGFKINWNAVKAQPC
>CP011304.1|AKE65992.1|3612814_3613087_-|CRISPR-associated-protein-Cas2
MYFVISYDISDDKRRTKIHNTLKSYGQRVQYSVFECDLTDTQYAKLRGRLSKLIKPDTDSIRFYFLCACCRGKVERIGGELPRDNTIFFV
>CP011304.1|AKE65993.1|3613099_3614104_-|CRISPR-associated-protein-Cas1
MGTVYVTREDAFLGKNDERLTVKASKETILDVPLLNVDGVVLFGRGSLSPALVIELLERHIPLSFVTSTGRYLGRLEPEMTKNIFVRRAQWQAAGDSPKAIHLVRGFVRGKLKNYRNILLRRQRDRKELDLQTAIACLEAAIGSIETTSAIDSLRGLEGAGSAAYFSCFDSLILGDTFTFASRNRRPPRDPVNSLLSLGYALLRHDVQSAINLVGFDPYLGYLHYQRYGRPSLALDLMEEFRAIVVDAVVLNGVNHPYLTPEHFTTEPLSGAVSLTREGLQIFLRLYEQKKQSKFKHPVMSKQCTYQEAFEIQARLMAKYLMDETDKYPPLILK
>CP011304.1|AKE65994.1|3614109_3614703_-|CRISPR-associated-RecB-family-exonuclease-Cas4
MDESDYIPIAALNHYAYCPHRCWRMFVAGEFLNNSYTIEGTNLHERVHTVGAGNREEIWQIRAIWLKSDNYRLIGKADLIESHDGEFIPVEYKRGSKGEWDNDELQVCAQAICLEEMTGKRLDTGYIYYASSHQRQPVAIDLALRQRAIATIRAVETLIQTGKMPPAVYSPRCKGCSLFDRCLPRLTEKVQRYQEED
>CP011304.1|AKE65995.1|3614705_3615539_-|CRISPR-repeat-RNA-endoribonuclease-Cas6
MPYSLVLNLTPRSPIYPNFLTGRHLHALFLTLVSSVDQELGNILHASDADKAFTLSPLQMQSRRKTINFPRWRHEREIAPETPCWWRISLLDDRLFGKLTPLWLNLNPKQPWHLGSADLVITSVLATPQSVQPWANSCTYQYLYENASETNREFDFLFATPVTFRQGKFDSALPTRELVFNSLLSRWNRYSGISFDSIALESIFPSFFDIQTKLTDEAYKNQSIGCVGEIHYRLLGEVEPAKIKAINALADFALYAGVGRKTTMGMGMTRRISKDKR
>CP011304.1|AKE65996.1|3615538_3616105_-|Protein-of-unknown-function-DUF820
MTLISSKSLTLPEFLSLTPPDGDITYELVDGEAIPKMSPKFFHSRLTGALFLLLDRWNQGRGEVGIEWAIVLSKNDRDWCPVPDLLYISPERLGDITLTDEACPVPPELVIEIISPEQSFSSLSEKAVDYLKAGVSRVWIVDPQAKQITIFYPDAPPAIKKGDDEMSDILLPDLTLTPGQIFAKARLS
>CP011304.1|AKE65997.1|3616145_3618881_-|CRISPR-associated-helicase-Cas3
MSKSNPQPFFKFGRVFFPGEPTIAPDKILFQPLGNHVGNVRQLARKWQDGNFSLERVIEGINLHDKAKPQTFKIRVETNKQGEFTKYTYSFKGHRFKVDNPQNLWVQALARGHHDYSTKEIIKDTYQLKKDTEYQKIFSKDPLQYAKELYILEMCDQIEAELACRVIGDDEQAKSRTFMDFTITKGTSEDSNHRVFYLDPYPFKEPTITLNFRSWTYNLSDEDKNQLQQLHENRKDKELGSKLNTLVKEWWKKNEHTISEDRAITAIIKPDNSNTYSPSEKSENAIFWWYEELANFQPNPMQEEVFQTMVKNQHPAFILKAPTGAGKFEAIIIPFLAMLSTKEDRPRLIIPLPARSLLEDQKQRCDKYLKQFSLLHKGREVSLVIDTGTEMNRYVYLDGEVKSSNNSRRHLYKGDIILTTIDKFIYRYFGYGDKQKSFIFPYRIYHGNTLICFDEAHTYDDISFTNFCSLVKALYEAGCSLVLMTATLSQNHLERFDYLADNMIDYIDVQDNLEKLNNFYQQILKQDYSNLKQFEFYEEPTNLQQKLTSIALEEWNSNPSHRIIVSVETVKDAIAIYEKIKQTLNIKFSEKKEFLFLYHGRLSDIPKTSHYSRTNLYQRLKERDENDQAYILVTTSAIEVGCDLNSTRLITQLCNPESLIQRAGRCNRKGNVEDAKIIVIGNNIPEFVNTLSEAELENYKTILKGLHDQNFDPKAIMNCVSTKQTIDDYRVVELFSLLQDYVYNADLTCQSAHEKGLVITRSWTPSVTLVYDDGKQGDSLEKIVKESPQIQVSIDRLILKKNNEGNYTNQYANVSVYEWIYDKEETRYKLEPLKYWGCAYSKELVIKVCAVQEGAISDSFEPYSYDHELGFKDLPGVFIKWRSNGYQERLQYNPTKDRSVVINYTSALTQD
>CP011304.1|AKE65998.1|3618873_3619563_-|hypothetical-protein
MLSEGLDIPETSINKENPPYFTLPRQYIALGAYPVLDKWSGVHRTHRKGTRSFNHDVFSRLYIDGDRENFQLHTWEYFIAEELIGYVVSESKSSLEAFSNLQGVGCKIGKEGFAVIDEVSESIRLQRKILSAHPSTVVPMEALIQRNPCINRCDIYNLYRHEWSADQTQDEDKGLFDTERSPINGFIPFVAAYYPEKAHPLPTLDFYTDGNLQIPVALVELLQRESINV
>CP011304.1|AKE65999.1|3619701_3620595_-|hypothetical-protein
MATESKVTTGLPKTDANKPRLHFDIYAILEGSQELYLGHEVQVNVNLVEIVKLSTKDGKEIEKCYISPTKRRGVERRCLLWSPVKSGELLGDKQNCGIPKTCAEPTCPICATFGALDPGKRTLIGRVTHGGGVAIQEIYPVEKQRAMHPALLVNRNDETPTPFRREYNQPGILYPVYNHALSITDQDFSAVAYAFLDSLPRIGSGNPKGIAIAETDDRTPLLVLDRYLSPRGKRPIVSPSETDPQKAINDFLYLALYPETNFTNHIQEAHFDRWIGNEALAKLQEYSAIFVDTVLQA

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Crispr_ID: CP011304_24

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_24

3610677-3612581

TypeV

I-D,II-B

Consensus_repeat	Method
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	PILER-CR
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CRT

26 spacers

cas2,cas1,cas4,cas6,cas3,cas5,cas7,cas8b5

The CRISPR arrays of CP011304_24

>merge|CP011304|24|3610677-3612581|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTAGAGCGTCTAGGAGGGCTGCTTATGGCGTAATCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACACTCGCTAAAGTCTTTGGGGGGAGATGTAGAAATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATGGGTTAGTCTGTGGGGATAGTATAGAGAAAACTGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACACAGACTCAACCTTATCAGCAATCTCAACGGTATTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAGATCGATCTGATCGAGCGATCATCTTCTTTCTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATTTAGTGGAATTGGCTAATCAAGCTGGTGATGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTGCGCTTTTGATCTCAATAACTCAGGATTTAATAGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGAAACCGAAGATTAATTTTATCAGACTCAAACCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTGCCGAAAGGCAAATTCGCAACTTTTGCGGATTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAGCTTTCTTTCAGTACCCGGCTCACAAGCCTGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTATTTGATTCCGATAAGCTATTAGAGCAGTTACAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCTTCTTGTCTGAGGATACTAAATAATCTAGGTTTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAACGGACGCGATCGGAACCGTAACGGGTGAGGGAATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAAAGACAAGCTTTTGGGGACTTGGCAAAAAGCCAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGACTTAAGGCCGTCATGGCAGACCGGGATGTAAATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGCATTAGATGATTTACTGCAATCCCTTGAGGGATTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGCCGTCAAGGCTCAACCCTGCTAACTGGTAAACTCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTAGATGGTTTTTTAGGGTGTCTAGAATACTGTTTAGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCCTTCCTTGCTTTAAGCTTGGCAGCGTACTTGTCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCTTAATAGCGAGTCACCCTTGTCGGGGTTAGTCATTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGGAAATTTCCCCACTGAGAAAGCAGTCCATTAGCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCGTTGACGGCTGCCGTCCGGGAACCGGCGATGAGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAGTCTTCTGGCAATTAGGCCGCGCCCTAAAATTGTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCCTCACTTTTATACGATTTTATTAATCAATGCCTAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAATTACGGTTTTTTCTGGATCGGCGCGAAGGTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGAGATCACTTTTACTAATATCCTACTCCAAAAAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

>CP011304|24|5|3610677-3612581|PILER-CR
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGAGCGTCTAGGAGGGCTGCTTATGGCGTAATC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACTCGCTAAAGTCTTTGGGGGGAGATGTAGAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATGGGTTAGTCTGTGGGGATAGTATAGAGAAAACTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACAGACTCAACCTTATCAGCAATCTCAACGGTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGATCGATCTGATCGAGCGATCATCTTCTTTCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTTAGTGGAATTGGCTAATCAAGCTGGTGATG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCGCTTTTGATCTCAATAACTCAGGATTTAATAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAAACCGAAGATTAATTTTATCAGACTCAAACCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCCGAAAGGCAAATTCGCAACTTTTGCGGATTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGCTTTCTTTCAGTACCCGGCTCACAAGCCTGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTATTTGATTCCGATAAGCTATTAGAGCAGTTACAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTCTTGTCTGAGGATACTAAATAATCTAGGTTTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AACGGACGCGATCGGAACCGTAACGGGTGAGGGAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAAAGACAAGCTTTTGGGGACTTGGCAAAAAGCCAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GACTTAAGGCCGTCATGGCAGACCGGGATGTAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCATTAGATGATTTACTGCAATCCCTTGAGGGATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCCGTCAAGGCTCAACCCTGCTAACTGGTAAACTC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGATGGTTTTTTAGGGTGTCTAGAATACTGTTTAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTTCCTTGCTTTAAGCTTGGCAGCGTACTTGTCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTAATAGCGAGTCACCCTTGTCGGGGTTAGTCATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GGAAATTTCCCCACTGAGAAAGCAGTCCATTAGC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CGTTGACGGCTGCCGTCCGGGAACCGGCGATGAGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGTCTTCTGGCAATTAGGCCGCGCCCTAAAATTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTCACTTTTATACGATTTTATTAATCAATGCCTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAATTACGGTTTTTTCTGGATCGGCGCGAAGGTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAGATCACTTTTACTAATATCCTACTCCAAAAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

>CP011304|24|23|3610677-3612581|CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGAGCGTCTAGGAGGGCTGCTTATGGCGTAATC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACTCGCTAAAGTCTTTGGGGGGAGATGTAGAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATGGGTTAGTCTGTGGGGATAGTATAGAGAAAACTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACAGACTCAACCTTATCAGCAATCTCAACGGTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGATCGATCTGATCGAGCGATCATCTTCTTTCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTTAGTGGAATTGGCTAATCAAGCTGGTGATG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCGCTTTTGATCTCAATAACTCAGGATTTAATAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAAACCGAAGATTAATTTTATCAGACTCAAACCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCCGAAAGGCAAATTCGCAACTTTTGCGGATTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGCTTTCTTTCAGTACCCGGCTCACAAGCCTGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTATTTGATTCCGATAAGCTATTAGAGCAGTTACAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTCTTGTCTGAGGATACTAAATAATCTAGGTTTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AACGGACGCGATCGGAACCGTAACGGGTGAGGGAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAAAGACAAGCTTTTGGGGACTTGGCAAAAAGCCAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GACTTAAGGCCGTCATGGCAGACCGGGATGTAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCATTAGATGATTTACTGCAATCCCTTGAGGGATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCCGTCAAGGCTCAACCCTGCTAACTGGTAAACTC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGATGGTTTTTTAGGGTGTCTAGAATACTGTTTAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTTCCTTGCTTTAAGCTTGGCAGCGTACTTGTCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTAATAGCGAGTCACCCTTGTCGGGGTTAGTCATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GGAAATTTCCCCACTGAGAAAGCAGTCCATTAGC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CGTTGACGGCTGCCGTCCGGGAACCGGCGATGAGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGTCTTCTGGCAATTAGGCCGCGCCCTAAAATTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTCACTTTTATACGATTTTATTAATCAATGCCTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAATTACGGTTTTTTCTGGATCGGCGCGAAGGTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAGATCACTTTTACTAATATCCTACTCCAAAAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

>CP011304|24|4|3610677-3612581|CRT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGAGCGTCTAGGAGGGCTGCTTATGGCGTAATC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACTCGCTAAAGTCTTTGGGGGGAGATGTAGAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATGGGTTAGTCTGTGGGGATAGTATAGAGAAAACTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACAGACTCAACCTTATCAGCAATCTCAACGGTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGATCGATCTGATCGAGCGATCATCTTCTTTCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTTAGTGGAATTGGCTAATCAAGCTGGTGATG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCGCTTTTGATCTCAATAACTCAGGATTTAATAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAAACCGAAGATTAATTTTATCAGACTCAAACCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCCGAAAGGCAAATTCGCAACTTTTGCGGATTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGCTTTCTTTCAGTACCCGGCTCACAAGCCTGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTATTTGATTCCGATAAGCTATTAGAGCAGTTACAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTCTTGTCTGAGGATACTAAATAATCTAGGTTTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AACGGACGCGATCGGAACCGTAACGGGTGAGGGAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAAAGACAAGCTTTTGGGGACTTGGCAAAAAGCCAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GACTTAAGGCCGTCATGGCAGACCGGGATGTAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCATTAGATGATTTACTGCAATCCCTTGAGGGATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCCGTCAAGGCTCAACCCTGCTAACTGGTAAACTC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGATGGTTTTTTAGGGTGTCTAGAATACTGTTTAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTTCCTTGCTTTAAGCTTGGCAGCGTACTTGTCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTAATAGCGAGTCACCCTTGTCGGGGTTAGTCATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GGAAATTTCCCCACTGAGAAAGCAGTCCATTAGC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CGTTGACGGCTGCCGTCCGGGAACCGGCGATGAGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGTCTTCTGGCAATTAGGCCGCGCCCTAAAATTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTCACTTTTATACGATTTTATTAATCAATGCCTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAATTACGGTTTTTTCTGGATCGGCGCGAAGGTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAGATCACTTTTACTAATATCCTACTCCAAAAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE65992.1\|3612814_3613087_-\|CRISPR-associated-protein-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP011304.1\|AKE65995.1\|3614705_3615539_-\|CRISPR-repeat-RNA-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
CP011304.1\|AKE65981.1\|3592922_3593405_+\|Cytochrome-c,-class-I	unknown	unknown	gnl\|CDD\|379187
CP011304.1\|AKE65996.1\|3615538_3616105_-\|Protein-of-unknown-function-DUF820	unknown	unknown	gnl\|CDD\|99749
CP011304.1\|AKE66001.1\|3623216_3623360_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65993.1\|3613099_3614104_-\|CRISPR-associated-protein-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
CP011304.1\|AKE65986.1\|3599063_3599558_+\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|315923
CP011304.1\|AKE65983.1\|3595915_3598081_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226428
CP011304.1\|AKE65990.1\|3609111_3610608_+\|transposase	unknown	unknown	gnl\|CDD\|290319
CP011304.1\|AKE66000.1\|3620597_3623129_-\|hypothetical-protein	cas8b5	mkCas0131_cas8b5_CAS-I-B	gnl\|CDD\|237177
CP011304.1\|AKE65999.1\|3619701_3620595_-\|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	unknown
CP011304.1\|AKE65987.1\|3599881_3601108_-\|Transposase	unknown	unknown	gnl\|CDD\|376574
CP011304.1\|AKE65985.1\|3598665_3599109_+\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|225949
CP011304.1\|AKE65994.1\|3614109_3614703_-\|CRISPR-associated-RecB-family-exonuclease-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
CP011304.1\|AKE65982.1\|3593744_3595898_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226428
CP011304.1\|AKE65988.1\|3603598_3603757_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65998.1\|3618873_3619563_-\|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
CP011304.1\|AKE65989.1\|3607003_3608152_-\|Mobile-element-protein	unknown	unknown	unknown
CP011304.1\|AKE65984.1\|3598093_3598627_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE65997.1\|3616145_3618881_-\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE65992.1\|3612814_3613087_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.25525e-37
CP011304.1\|AKE65995.1\|3614705_3615539_-\|CRISPR-repeat-RNA-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.28864e-45
CP011304.1\|AKE65981.1\|3592922_3593405_+\|Cytochrome-c,-class-I	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	3.50185e-08
CP011304.1\|AKE65983.1\|3595915_3598081_+\|hypothetical-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.38343e-162
CP011304.1\|AKE65986.1\|3599063_3599558_+\|Mobile-element-protein	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.32222e-41
CP011304.1\|AKE65993.1\|3613099_3614104_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	2.59523e-141
CP011304.1\|AKE65990.1\|3609111_3610608_+\|transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.0941e-34
CP011304.1\|AKE66000.1\|3620597_3623129_-\|hypothetical-protein	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0.00917603
CP011304.1\|AKE65987.1\|3599881_3601108_-\|Transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	4.17478e-80
CP011304.1\|AKE65985.1\|3598665_3599109_+\|Mobile-element-protein	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.76321e-21
CP011304.1\|AKE65982.1\|3593744_3595898_+\|hypothetical-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.2671e-152
CP011304.1\|AKE65994.1\|3614109_3614703_-\|CRISPR-associated-RecB-family-exonuclease-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.35866e-54
CP011304.1\|AKE65996.1\|3615538_3616105_-\|Protein-of-unknown-function-DUF820	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.55985e-27
CP011304.1\|AKE65997.1\|3616145_3618881_-\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.32697e-43

>CP011304.1|AKE65990.1|3609111_3610608_+|transposase
MYRKSELPSTPPENFELPFEGKLSQDNRWVIMANLIPWSEFEAEYASLFSEEMGTPAKTFRTALGALIIKEKLGTSDRETVEQIKENPYLQYFLGFSSYSNEPRFEASMLVHFRERITLELINKVNRFMVKNSREIKEEENTEKKLESETQSQPENRGKLILDASCAPADISYPTDLNLLNQGRKQTEKIIDILYETLKGKLVQKPRTYRLLARKSYLEVAKKRKPTVKQRRKALKRQLQYLKRNLDHIEQLLAEGASLQSLKKRDYKLLLVVTEVYRQQLWMYQNNKQSIEDRIVSLTQPHIRPIVRGKAGKPVEFGAKFSASCIDGYIFLDRISWDNFNESGDLKAQIEAYYDYTGYYPESVHVDKIYRTRENRAWCKERGIRISGPPLGRPAKNVSKEQKKQATDDERIRNCIEGKFGQGKRRFSLGKVMAKLPHTSFSAIAITFLVMNLSNLLRQVFWAFLCLKWKNSTFSRSMIRISYNLKINQQLKLMLVAK
>CP011304.1|AKE65989.1|3607003_3608152_-|Mobile-element-protein
MISELYQKVLENELGRARYLLLLMIVGTLQILKQAKLEILAEALPIPILFESRRKKLKRFLKLEILNIEKIWFLCLKEMLKQQQRFTTKGLAYIAIDRTSWGAINILMVSLIYDKRAIPIYWEILDKKGSSNLEEQQRVLEKTLTVLSGHKIVVLGDREFCSVSLGKWLQKQSLYFCLRQKKSTNVKTKEGIYQEMRELGLSPGTQLFLNDVNITKEQGFGQFNLAGKWKKTYGGFQTKEPWYILTNFVDLETAIIAYQKRFDIEEMFRDFKSGGYSLEGSQLAPQYLSKLIIVIAIAYTSATLQGKKIKDMGIQKYVTRPEKRYKGQRRHSSFYVGQHLYHWLQLHQMFQKNIEELMQISRYRLKDYIKGQRAISLALSTF
>CP011304.1|AKE65988.1|3603598_3603757_+|hypothetical-protein
MFQSLIGFKINWNVSSDEEAVVFYEFQSLIGFKINWNSGSKELGLRCKSFNP
>CP011304.1|AKE65987.1|3599881_3601108_-|Transposase
MPSNPQLKLMTELLHLEGVVVTNYQIITDIGIVLHLENMSRESQCIHCGSKTEKVHQNNELTIRDLPFGEQALYLRINRRQMRCEKCGKKFTEELNYLPKKRTYTDRFRKKIVAEVLNSDLKNTAERNGVSEQEIETMLKDLGEELITAKPQGLKKLGIDEIAMIKGKGNYYAVLVNIDTGKIIGLGEKRTEEALTEYLKHWGEEVLSQIEEVSIDLWIGYKNVAEKLMPQAQIVGDRFHVMKQVNNELDEARKEVKREAAKIKNKKNKENILAGIAKSKYALLKNEGDLVEKERKKLEEIYKVSPKLGEMHKLKEEFREVFEKNTEGNEGLFALSDWLKKAMAYFPKSCQTIRRWIDEITAYFDNRTTQGTVEGINNKLKVIKRRGYGFRNFKNFSLRCLLNWHFAS
>CP011304.1|AKE65986.1|3599063_3599558_+|Mobile-element-protein
MEYWSQVREIEASKLIFIDESGVNLALLRLYARALIGRRDRGRKPQKRGRNISIISAISLEKVVASVNIYGAVDAVTFEGFILKEVLPKIKEGDCLLMDNAKIHLGEMVREIIEQEKARLIYLPPYSPEFSPIENFWSKVKAILRKLKARTYKDLIEGIELAML
>CP011304.1|AKE65985.1|3598665_3599109_+|Mobile-element-protein
MRPYSVDFRQKIIDVWKKEKISIRGLAQRFDVAKSFIQKLLKQHKETGDIRPRPQGGSPPTKLNSEQLIILIEIIESNNDATLEELSDLLYEKTQVKVSRATLGRLTQKLNYSFKKKHYTRRKKKVTGYSKKEWNTGLKFGKLRHQN
>CP011304.1|AKE65984.1|3598093_3598627_+|hypothetical-protein
MQLHQDIQPHLNDNNYQLVLQFYEQLIENNSPVIEDYFYLGLAYLLQDREEDAQATWLLVLSQAAESELSGWIKTLTQILDAEATRQENSQRLETSYLIRLHLQNLNPSFLNNLLHLMELEIQFQIFAMEKCHDWCVFELLENTATAAINLDLLLGVTEKVLIYPSTYSTSWSYEVQ
>CP011304.1|AKE65983.1|3595915_3598081_+|hypothetical-protein
MSWQNEVKTALENNQYDIVSQFYEELIERETTEISHYWYLGLAYLLEDREEDAQATWLLVLSQAAESELSGWIKTLTQILDAEATRQENSQRLETSYLIRLHLQNLNPSFLNNLLHLMELEIQFQIFAMEKCHDWCVFELLENTATAAINLDLLLRVTEKVLIYPCTDTIHFLELAALHINNPEIIATKVISAIVNYAYQQKQSVFAINLVELCLRFLPEDLYLQNSLFNLYKTTTIDYKKSLEIADNFYKSCQTTTEKLLGISLVIAISQAKGDWGNLPKFIDELIQLIERQINAKQFNARPFIIDSILGVTICLPYYQDNPKINRYLQSKLAEIFQADVRTRYNYIAPVSSPKSPARKIKIGYIAYTLRRHSVGWLSRWLFHYHNRDKFEIYTYFVNQAADEITEKWFINNSDYSYNLPAKIEQITAQIRQDNLDILVDLDSLTNNTTCLVIALKPAPIQVTWLGLDASGIPAIDYFIADNYVLPENAEEIYSEKIIRLPNSYLSVDGFEVGVPTRRRTDLNIPDDAIIYLTVQSGLKRTLNMIYLQLQILQQVPNSYLLIKGFADKETIRELFLKSADELGISQDRLRFLPNDFNEETHRANLGIADIVLDTYPYSGATTTLETLWMGIPLVTRVGEQFAARNSYTFMKNAGISQGIAWSDEEYVQWGIKLGLDKNLREEVRWKLRKSRHTSPLWNSKQFTRNLETAYQQMWNIYCQS
>CP011304.1|AKE65982.1|3593744_3595898_+|hypothetical-protein
MSWHSQVEPAIIQGDFWQVSQFYEELIEREPLEISHYWYLGLAYLLEAREEEAQTTWLFVLSQGDEQEMNSWTVDLVNILDGEARRQVEVKNWQLSWVIRQHIYQINPDNLENLLYLVLLEIKLEYFYPQKLKDWQIVDLINSDKLENFDINLLLHTIYKLLDWPAQEVLDIIITLLKIDSQQSAILEIIEQHIEKIYYTDKTNAVILTLSCLDIIPDHLVLLHKIHQYYIDTGNFELALETANKIKNLSNDKAAKLYGIYLLLYTEILAGNWLNIDNKTQEYYQAIQNNLERGQCPMSNQAEVISITSPLAYLKDDLVGNRWLTNQLAKLFQEAVRKRFNQVTIESQKPKDVNKKLNIGYIAHTLRRHSVGFLSRWLIHYHQRDNFNIHLYLVNQVEDDITEQWFKNKVDKYNNLPANPQIIAEKINQDNIDILVDLDSITKDNTCRVMALKPAPIQITWLGLDATGIPAIDYFLVDNLVLEKNAQEFYQEKLWRLPNCYLAVDGFEIGIPTLTRQDLNIPADAITYLTLQVGLKRNPATIRLQMQIIKAVPNSYLLIKGAGSEKLINDLFISIAKEEGIDENRLRFLSGVANEEIHRANLQIADVVLDTYPYSGATTTLETLWMGIPVVTKVGQQWSSRNSYTFMTHGGISEGIAWSDEEYVQWGIKLGKDEQLRRKVIAKLDESRQTSPIWNARQFTKDVENAYRQMWQIYCES
>CP011304.1|AKE65981.1|3592922_3593405_+|Cytochrome-c,-class-I
MSYIILHLPISSSGGGILGQKVAKCKEKLIFPSAACVNSQLVKPKFGLYRFLMVIIVVLFLISTFLITFHLAKMSDPYIKEVLSRQGNVSRGYEIFQINCAACHGQFADGIVGPSLEDVSRRKSRISLIEQVISGKTPPMPKFQPDTQAMADLLVYLENL
>CP011304.1|AKE65992.1|3612814_3613087_-|CRISPR-associated-protein-Cas2
MYFVISYDISDDKRRTKIHNTLKSYGQRVQYSVFECDLTDTQYAKLRGRLSKLIKPDTDSIRFYFLCACCRGKVERIGGELPRDNTIFFV
>CP011304.1|AKE65993.1|3613099_3614104_-|CRISPR-associated-protein-Cas1
MGTVYVTREDAFLGKNDERLTVKASKETILDVPLLNVDGVVLFGRGSLSPALVIELLERHIPLSFVTSTGRYLGRLEPEMTKNIFVRRAQWQAAGDSPKAIHLVRGFVRGKLKNYRNILLRRQRDRKELDLQTAIACLEAAIGSIETTSAIDSLRGLEGAGSAAYFSCFDSLILGDTFTFASRNRRPPRDPVNSLLSLGYALLRHDVQSAINLVGFDPYLGYLHYQRYGRPSLALDLMEEFRAIVVDAVVLNGVNHPYLTPEHFTTEPLSGAVSLTREGLQIFLRLYEQKKQSKFKHPVMSKQCTYQEAFEIQARLMAKYLMDETDKYPPLILK
>CP011304.1|AKE65994.1|3614109_3614703_-|CRISPR-associated-RecB-family-exonuclease-Cas4
MDESDYIPIAALNHYAYCPHRCWRMFVAGEFLNNSYTIEGTNLHERVHTVGAGNREEIWQIRAIWLKSDNYRLIGKADLIESHDGEFIPVEYKRGSKGEWDNDELQVCAQAICLEEMTGKRLDTGYIYYASSHQRQPVAIDLALRQRAIATIRAVETLIQTGKMPPAVYSPRCKGCSLFDRCLPRLTEKVQRYQEED
>CP011304.1|AKE65995.1|3614705_3615539_-|CRISPR-repeat-RNA-endoribonuclease-Cas6
MPYSLVLNLTPRSPIYPNFLTGRHLHALFLTLVSSVDQELGNILHASDADKAFTLSPLQMQSRRKTINFPRWRHEREIAPETPCWWRISLLDDRLFGKLTPLWLNLNPKQPWHLGSADLVITSVLATPQSVQPWANSCTYQYLYENASETNREFDFLFATPVTFRQGKFDSALPTRELVFNSLLSRWNRYSGISFDSIALESIFPSFFDIQTKLTDEAYKNQSIGCVGEIHYRLLGEVEPAKIKAINALADFALYAGVGRKTTMGMGMTRRISKDKR
>CP011304.1|AKE65996.1|3615538_3616105_-|Protein-of-unknown-function-DUF820
MTLISSKSLTLPEFLSLTPPDGDITYELVDGEAIPKMSPKFFHSRLTGALFLLLDRWNQGRGEVGIEWAIVLSKNDRDWCPVPDLLYISPERLGDITLTDEACPVPPELVIEIISPEQSFSSLSEKAVDYLKAGVSRVWIVDPQAKQITIFYPDAPPAIKKGDDEMSDILLPDLTLTPGQIFAKARLS
>CP011304.1|AKE65997.1|3616145_3618881_-|CRISPR-associated-helicase-Cas3
MSKSNPQPFFKFGRVFFPGEPTIAPDKILFQPLGNHVGNVRQLARKWQDGNFSLERVIEGINLHDKAKPQTFKIRVETNKQGEFTKYTYSFKGHRFKVDNPQNLWVQALARGHHDYSTKEIIKDTYQLKKDTEYQKIFSKDPLQYAKELYILEMCDQIEAELACRVIGDDEQAKSRTFMDFTITKGTSEDSNHRVFYLDPYPFKEPTITLNFRSWTYNLSDEDKNQLQQLHENRKDKELGSKLNTLVKEWWKKNEHTISEDRAITAIIKPDNSNTYSPSEKSENAIFWWYEELANFQPNPMQEEVFQTMVKNQHPAFILKAPTGAGKFEAIIIPFLAMLSTKEDRPRLIIPLPARSLLEDQKQRCDKYLKQFSLLHKGREVSLVIDTGTEMNRYVYLDGEVKSSNNSRRHLYKGDIILTTIDKFIYRYFGYGDKQKSFIFPYRIYHGNTLICFDEAHTYDDISFTNFCSLVKALYEAGCSLVLMTATLSQNHLERFDYLADNMIDYIDVQDNLEKLNNFYQQILKQDYSNLKQFEFYEEPTNLQQKLTSIALEEWNSNPSHRIIVSVETVKDAIAIYEKIKQTLNIKFSEKKEFLFLYHGRLSDIPKTSHYSRTNLYQRLKERDENDQAYILVTTSAIEVGCDLNSTRLITQLCNPESLIQRAGRCNRKGNVEDAKIIVIGNNIPEFVNTLSEAELENYKTILKGLHDQNFDPKAIMNCVSTKQTIDDYRVVELFSLLQDYVYNADLTCQSAHEKGLVITRSWTPSVTLVYDDGKQGDSLEKIVKESPQIQVSIDRLILKKNNEGNYTNQYANVSVYEWIYDKEETRYKLEPLKYWGCAYSKELVIKVCAVQEGAISDSFEPYSYDHELGFKDLPGVFIKWRSNGYQERLQYNPTKDRSVVINYTSALTQD
>CP011304.1|AKE65998.1|3618873_3619563_-|hypothetical-protein
MLSEGLDIPETSINKENPPYFTLPRQYIALGAYPVLDKWSGVHRTHRKGTRSFNHDVFSRLYIDGDRENFQLHTWEYFIAEELIGYVVSESKSSLEAFSNLQGVGCKIGKEGFAVIDEVSESIRLQRKILSAHPSTVVPMEALIQRNPCINRCDIYNLYRHEWSADQTQDEDKGLFDTERSPINGFIPFVAAYYPEKAHPLPTLDFYTDGNLQIPVALVELLQRESINV
>CP011304.1|AKE65999.1|3619701_3620595_-|hypothetical-protein
MATESKVTTGLPKTDANKPRLHFDIYAILEGSQELYLGHEVQVNVNLVEIVKLSTKDGKEIEKCYISPTKRRGVERRCLLWSPVKSGELLGDKQNCGIPKTCAEPTCPICATFGALDPGKRTLIGRVTHGGGVAIQEIYPVEKQRAMHPALLVNRNDETPTPFRREYNQPGILYPVYNHALSITDQDFSAVAYAFLDSLPRIGSGNPKGIAIAETDDRTPLLVLDRYLSPRGKRPIVSPSETDPQKAINDFLYLALYPETNFTNHIQEAHFDRWIGNEALAKLQEYSAIFVDTVLQA
>CP011304.1|AKE66000.1|3620597_3623129_-|hypothetical-protein
MSIKQLSLFENVSPEQDTKAVTTSEEISELEITILLSALTANAIAQTDSTLISALADDPRAIAIAKTFDCPKLVRQLRLSQPQKESEFIKPTFQGNQVFYREREIGEIQLVYKSPSPGELQAKLTHESTIDRFLEFLQKKYQIVSLHESNYHVQIFIPQTQQSHNIEELWIEFITKVIFSIYGDFQYQLSGLMQTFITMLKSVPLAGRGFSTLEIPIITRDQAKVLAAFYLAIFEQVKDRQEKRETEIVQLIEQIKSEELNSKDLESTEKKLKSKQEMQAKEFNKYRDYFQKVLSKLLDEQRAIYHERRNLDEQLGKTGLSKAQVSKLQKQKDKIESQIIFQEDSIEEKQRFLEESDGNPFEFIEKQKQTDLLKPIQAIAKSFNKTATEQINSTRGDIFTQCILEMYRLLENPKLETIPEPLLTINPKILAARTAGDDGKDFCYSCGVTLDAKTVRWRVARFMFERPSQRRQSSSSEDRPFICSSCSVLSFASPLKVTDDSIILRLESQDDRGVTKVKIKDYLRMLTNKEVHLSSGCYIALTSEKTITGDTASKKLGQFQYALAKVASIFPLEVIKDFKFVLQLQRTEKVLVSRQLIFIKGLIEGYDQSIIVSGKDINLKLGDAIRYVQQDSPYLADYTLLKASSISDRLLLERVREQYLQTIIQDIQGETMTIDSLWKRAKLYEDVAALTGLTYAFAQSLESTAKKLMKPEDAEREVSKLIEKVDDPVAFSYYATLGDEKKISVQARLYHNPDNYFIYEQAKKMLENKLEITNREEVDNSGKKWLVFYADDITKSYAYFANPDQVGNYAQEKEWKNLTYNLKLSLYTRFPELVRKLSSKGDK
>CP011304.1|AKE66001.1|3623216_3623360_-|hypothetical-protein
MPNVDDIHQQIEIIQDQIELLQCQIKELRQSPVLDSEGEVRIFADLT

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Crispr_ID: CP011304_25

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_25

3885605-3885698

Orphan

Consensus_repeat	Method
CACTGATTACTGTTTACTGTTTACTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP011304_25

>merge|CP011304|25|3885605-3885698|CRISPRCasFinder
TTCAGTTCACTGATTACTGTTTACTGTTTACTGGACGGCTACGCCGTGCCTTTGGCAACACTGAAAAAAGCTTCCCACTGATTACTGTTTACTG

>CP011304|25|24|3885605-3885698|CRISPRCasFinder
TTCAGTTCACTGATTACTGTTTACTG	TTTACTGGACGGCTACGCCGTGCCTTTGGCAACACTGAAAAA
AGCTTCCCACTGATTACTGTTTACTG

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE66242.1\|3878096_3878906_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|223377
CP011304.1\|AKE66244.1\|3881601_3881811_+\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|224576
CP011304.1\|AKE66245.1\|3882292_3883687_-\|Ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
CP011304.1\|AKE66248.1\|3887101_3889075_+\|Chaperone-protein-HtpG	unknown	unknown	gnl\|CDD\|235366
CP011304.1\|AKE66240.1\|3876754_3876997_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE66250.1\|3890947_3891298_+\|Pterin-4-alpha-carbinolamine-dehydratase	unknown	unknown	gnl\|CDD\|234845
CP011304.1\|AKE66253.1\|3894730_3894955_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224514
CP011304.1\|AKE66249.1\|3889384_3890887_+\|DNA-helicase-(Rad25--like-protein)	unknown	unknown	gnl\|CDD\|223989
CP011304.1\|AKE66243.1\|3879571_3879748_-\|Chemotaxis-regulator---transmits-chemoreceptor-signals-to-flagelllar-motor-components-CheY	unknown	unknown	gnl\|CDD\|214643
CP011304.1\|AKE66237.1\|3873859_3874921_-\|Mannose-1-phosphate-guanylyltransferase-(GDP)	unknown	unknown	gnl\|CDD\|223906
CP011304.1\|AKE66247.1\|3885744_3886842_+\|Diaminohydroxyphosphoribosylaminopyrimidine-deaminase	unknown	unknown	gnl\|CDD\|273015
CP011304.1\|AKE66238.1\|3875053_3875989_-\|Cytochrome-b6-f-complex-subunit,-apocytochrome-f	unknown	unknown	gnl\|CDD\|179460
CP011304.1\|AKE66254.1\|3895696_3895915_-\|HigA-protein-(antitoxin-to-HigB)	unknown	unknown	unknown
CP011304.1\|AKE66255.1\|3896159_3898211_-\|Oligopeptidase-A	unknown	unknown	gnl\|CDD\|341051
CP011304.1\|AKE66256.1\|3898327_3898537_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE66246.1\|3883892_3885329_-\|ammonium/methylammonium-permease	unknown	unknown	gnl\|CDD\|223083
CP011304.1\|AKE66241.1\|3877111_3878035_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|376501
CP011304.1\|AKE66251.1\|3891294_3892173_-\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|224995
CP011304.1\|AKE66239.1\|3876083_3876623_-\|Cytochrome-b6-f-complex-iron-sulfur-subunit-PetC1-(Rieske-iron-sulfur-protein)	unknown	unknown	gnl\|CDD\|237392
CP011304.1\|AKE66252.1\|3892331_3894224_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|236137

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE66242.1\|3878096_3878906_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	1.28316e-67
CP011304.1\|AKE66244.1\|3881601_3881811_+\|Mobile-element-protein	gnl\|CDD\|224576	COG1662, InsB, Transposase and inactivated derivatives, IS1 family [DNA replication, recombination, and repair].	0.00433805
CP011304.1\|AKE66245.1\|3882292_3883687_-\|Ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	9.43692e-169
CP011304.1\|AKE66247.1\|3885744_3886842_+\|Diaminohydroxyphosphoribosylaminopyrimidine-deaminase	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	2.21195e-143
CP011304.1\|AKE66250.1\|3890947_3891298_+\|Pterin-4-alpha-carbinolamine-dehydratase	gnl\|CDD\|234845	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated.	4.93181e-44
CP011304.1\|AKE66253.1\|3894730_3894955_-\|hypothetical-protein	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	9.30919e-09
CP011304.1\|AKE66249.1\|3889384_3890887_+\|DNA-helicase-(Rad25--like-protein)	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	5.39015e-108
CP011304.1\|AKE66243.1\|3879571_3879748_-\|Chemotaxis-regulator---transmits-chemoreceptor-signals-to-flagelllar-motor-components-CheY	gnl\|CDD\|214643	smart00387, HATPase_c, Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.	0.00157192
CP011304.1\|AKE66237.1\|3873859_3874921_-\|Mannose-1-phosphate-guanylyltransferase-(GDP)	gnl\|CDD\|223906	COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane].	9.78878e-146
CP011304.1\|AKE66248.1\|3887101_3889075_+\|Chaperone-protein-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
CP011304.1\|AKE66238.1\|3875053_3875989_-\|Cytochrome-b6-f-complex-subunit,-apocytochrome-f	gnl\|CDD\|179460	PRK02693, PRK02693, apocytochrome f; Reviewed.	0
CP011304.1\|AKE66255.1\|3896159_3898211_-\|Oligopeptidase-A	gnl\|CDD\|341051	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP). Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70). DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from Escherichia coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). OpdA may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala. This family also includes Arabidopsis thaliana organellar oligopeptidase OOP (At5g65620), which plays a role in targeting peptide degradation in mitochondria and chloroplasts; it degrades peptide substrates that are between 8 to 23 amino acid residues, and shows a weak preference for hydrophobic residues (F/L) at the P1 position.	0
CP011304.1\|AKE66246.1\|3883892_3885329_-\|ammonium/methylammonium-permease	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	1.08376e-152
CP011304.1\|AKE66241.1\|3877111_3878035_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|376501	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase. 6-Pyruvoyl tetrahydrobiopterin synthase catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin, the second of three enzymatic steps in the synthesis of tetrahydrobiopterin from GTP. The functional enzyme is a hexamer of identical subunits.	1.12711e-42
CP011304.1\|AKE66251.1\|3891294_3892173_-\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	1.98973e-103
CP011304.1\|AKE66239.1\|3876083_3876623_-\|Cytochrome-b6-f-complex-iron-sulfur-subunit-PetC1-(Rieske-iron-sulfur-protein)	gnl\|CDD\|237392	PRK13474, PRK13474, cytochrome b6-f complex iron-sulfur subunit; Provisional.	4.80363e-130
CP011304.1\|AKE66252.1\|3892331_3894224_-\|DNA-polymerase-IV	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	6.27048e-23

>CP011304.1|AKE66246.1|3883892_3885329_-|ammonium/methylammonium-permease
MKRIARKSGELVGLLPKINPVWLACVPLSAIIFVVWNTAVQAQDAKPLTPEDVQNALNTIWVLIASILVIFMNAGFAMLETGFCRQKNAVNVLAKNLIVFALSTISFWAIGFSLMFGSVSNEFFGTGGWFLSSSDPATYVMPASLPTSVFFLFQVAFAGTAATIVSGAVAERIKFVDFLVFSLIIVGIMYPITGHWVWGGGWLADLGFKDFAGSTVVHSVGGWSALTGAAILGPRMGKYINGRTSALPGHNMSIATLGCLILWIGWFGFNPGSTLAVNETVPYIAVTTNLAGAAGGIAATFTAWAKDGKPDLSMIINGILAGLVAVTAGCDGVSYWSALIIGLIAGVVVVYSVAFFDNLKIDDPVGATSVHLVCGVFGTLAVGIFNKDAGLITGQFQLFINQIIGIVAVGAFTVIVSGIVWTILKATLGIRVTPEEEMEGLDIGEHGMEAYSGFVKESDIVAGGHYASSVDMETPSSR
>CP011304.1|AKE66245.1|3882292_3883687_-|Ammonium-transporter
MLGLGFNCGVAPVFAETIAAAPPNPISAGDTAWMLISSALVLLMTPGLAFFYGGLVRSRNVLNTMMMSLVAMGVIGVTWVLWGYSLAFDVTPGKSGFGEGIEAFIGGLDWIFLNGVTAAAPDNIGYAPTVPHQVFMVYQMMFAIITPALISGAIVERVNFKAYFWFLLLWSTFIYSPLAHWVWGKGWLAATGALDFAGGTVVHISSGISALVAAWVIGPRRSFGVQAYAPHNVPFVLLGIGLLWFGWFGFNGGSALSSSSLATTAFVNTSIAASAGGLTWMLIEWILRGKPTAIGIASGFLGGLVGITPAAGYVLPIGAILIGSITALSCFFAVSLRAKLRFDDSLDTYPVHGVGGTIGALLTGLFATKAVNSAGNDGLFFGNPGLLWTQFVGVAATYIFAAVGTFVILKVLGLFMDLRVKPNTEAEGLDVPQHGEEAYGQEFEFGSSLSYQENAAATNPQENY
>CP011304.1|AKE66244.1|3881601_3881811_+|Mobile-element-protein
MDWVKQVGKLLPDSYNSETIPEVGELDELETFVGKKKNKICIGTAVDHFRDGILGWVIGGLARRVPSAT
>CP011304.1|AKE66243.1|3879571_3879748_-|Chemotaxis-regulator---transmits-chemoreceptor-signals-to-flagelllar-motor-components-CheY
MDLLDYCQKLVEYFIVKLEPQSAIIFQVEGSLEKGLWDINLIKHILTNLLGNALKYSP
>CP011304.1|AKE66242.1|3878096_3878906_-|3-oxoacyl-[acyl-carrier-protein]-reductase
MKLQGKTALVTGASRGIGRAIALELARQGLSRIVIVARDQERLEKLAKEIESLGVIATPLALDLTENDLVSASIIRVWQECLGIDILVNCAGIAHQTPFLRSQFSQVQAEISLNLMAMYTVTRLIARRMAIRGQGTIVNVSSMMGKIAAPSFSTYSATKFAILGFSQALRSELREHNIKVVTLLPSLTDTDMVRELQLFRWLKPMSAEEVAQTLITGLNREKTEIVVGWQSHLALWCQKLAPKLLEKIVDLASPLRQSKGKRGWREVFN
>CP011304.1|AKE66241.1|3877111_3878035_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MLERVTLNVTLQSHRSPTFMDCIINRRARFSASHRYYLPEWDEAENQRLFGLGSRFPGHGHNYELYVSLYKELNLYGMVENLSTVKQVIKQEVTSQLDYSYLNQVWPEFQQTLPTTENIARVIWQRLAPYLPLVKIQLFEHPELWAEYQGKDMEATLTIKTHFSAAHRLALPQLTLEQNSEIYGKCARVNGHGHNYHLEVSVAGEIDPRTGMIVDLGDLQKAIDELVVEPFDHAFLNKDIPYFAEVVPTAENIALYIAQLLEERIRQLGAELDKVKLIESPNNSAEIHCRGSVQAPRQLLEKTLTAV
>CP011304.1|AKE66240.1|3876754_3876997_+|hypothetical-protein
MSHGQLPQQSCVKCDRCFLAFAEMRNRKHRKNLKKFDPMEKLSLHIPLTWIQGNIEGARELWIETVYHSGKKAIPLPSQS
>CP011304.1|AKE66239.1|3876083_3876623_-|Cytochrome-b6-f-complex-iron-sulfur-subunit-PetC1-(Rieske-iron-sulfur-protein)
MSQVSGTDVPDLGRRQFMNLLTFGTITGVAAGALYPIVKYFIPPSAGGTGGGVTAKDALGNDVIVSQFLTSHNAGDRTLAQGLKGDPTYLVVQEDKTLANYGINAVCTHLGCVVPWNASEEKFMCPCHGSQYNAEGKVVRGPAPLSLALAHANVTDNDKVVFSTWTETDFRTGEEPWWS
>CP011304.1|AKE66238.1|3875053_3875989_-|Cytochrome-b6-f-complex-subunit,-apocytochrome-f
MKAVLVAIATVSLLLTSDVINPQSAQAYPFWAQQTAPETPREATGRIVCANCHLAQKPAEIEIPHSVLPDSVFEAVVKIPYDPASQQVLGDGSKGGLNVGAVLMLPDGFKIAPPDRIPEEMQEKLGGVYFQSYKEGQDNVVIVGPLPGDQYKEIVFPVLAPDPSQNKAIHFGKYAVHLGANRGRGQVYPTGEPSNNNAFKASTAGTISQISKTEAGGYEVTITSEAGPVVENIPAGPELIVSEGQAIEVGQFLTSNPNVGGFGQKETEVVLQNPGRIKGLVLFLGGIMLCQILLVIKKKQVETVQAAEMNF
>CP011304.1|AKE66237.1|3873859_3874921_-|Mannose-1-phosphate-guanylyltransferase-(GDP)
MNQSLVPVILAGGKGERFWPLSRLARPKQFLCLDGSGRSLLQATADRLLSLGAGWENLWVITASAIADGVREQLPDLPESNLLVEPVGKDTAPAVTWATLEVIKRYGKEVAIGFFPADHYIGNQEAYINTLKAAVEVAVSQKAIVTLGIKPDYPSTGYGYIEQGENQGEFNGLPVYKVSRFTEKPDRTTAENFLETGLFSWNSGMFIFQGQVVLEELKTHANNILQPLIDRGIAAYEDLEKKSIDYALMEKTQLAYVLPANFGWDDLGDWNSLERLLEAKGKNIELANHVGLDTEGSIIYASDEEEVIVTIGLKDLVIVRDGKATLVVHKDRTQDIKQVLKQLQTAPKLEKLL
>CP011304.1|AKE66247.1|3885744_3886842_+|Diaminohydroxyphosphoribosylaminopyrimidine-deaminase
MAQATEFDRTMMQRCLTLARQALGRTSPNPLVGSVIVQEGTIIGEGFHPGAGQPHAEVFALRQAAEKARGATLYVNLEPCNHYGRTPPCSEAIVQAGIKKVVVGMIDPNPLVAGKGIQRLASAGIETLVGVEESECHQLNQGFIHRITAKKPFGILKYAMTLDGKIAATSGHSTWITSPASRQIVHQLRSACDAIIVGGSTVRQDNPHLTTHGLSDHNPLRVVMTRSLDLPPSAHLWDTSQFPTLVYTQIDSNVKLKQQLLTKGVEVIELTEVTPTLVMENLYQRGFCQVLWECGGGLSAAAIAEGMVQKIIAFIAPKIIGGIQAPTAVGDLGFQLMSQALQLENVTVNYLNPDILIEGYLPSEK
>CP011304.1|AKE66248.1|3887101_3889075_+|Chaperone-protein-HtpG
MTVLEKGNITIHTENIFPIIKKSLYTDHEIFLRELISNSVDAISKLKMASLAGEARAEVPEPEINLAIDKENRTLSITDNGIGMTGEEIKKYINQVAFSSAEEFINKYQKSANDLIGHFGLGFYSAFMVAKKVEIDTLSYQEGATPVHWCCDGSPEFELTDSSRSQIGTTITLTLMDEEGEYLEPARIRQLVKTYSDFMPVPIKIDGEVINQQRALWKESPQNLTKEDYLEFYRYLYPFQEEPLLWVHLNTDYPFLLNGILYFPKLRPDVDVSKGQLKLFCNQVFVSDHCEEIIPDFLMPLRGVIDSPDIPLNVSRSALTKDRTVRRIADFIAKKIADRLKSLYNEDAKEYIRCWGDVGTFIKFGSLKEDKFKQQVEDILIYRTTYKPPETQVQLEAQTAEGDAWQEATVKTPLEAIEQEGYTTLKAYLERHKERHENRVFYCTDPHSQSTYVELYKNQGLEILFFDSFIDTNYFIPFLEREYSDVKFTRVDSELDSTLLEQDQASEIIDPASNKTRAELIKEIFAKALDNSRINIKTEALKSDDPQATPPAIVLLPEAMRRLQEMTAMMQQKAMAFPEEHILMINTNHPLIQQIIQISQGSIVTGSGESPSAQLAKMLCQHVYDLALIAQKGFDAEGMQAFVERSNRVLTKLTEKI
>CP011304.1|AKE66249.1|3889384_3890887_+|DNA-helicase-(Rad25--like-protein)
MRLPTLKYERGTLILHPPPKGKKWLDFATWDDRIERFRILAIHYRPLVETLQEEGINFQDEAKAFNNLELIASFEREPYPHQTEALIAWKKSQRRGVIVLPTAAGKTYLAQLALQSTPRSTLIIVPTIDLMHQWYAQMLAAFPDAEVGLLGGGSKDNSAILIATYQSAAIYSETLGNRYAFLIFDECHHLPSDFFRKIAEDSIAPYRLGLTATPDRGDGSHQDLDYLIGTIVYQKSPQDLSGKALADHEIIQIKVKLSAKEQEKYQEAIKIRNDFLRKNNLSLSGLDGWQNFVMISARSSEGRRAMLAHRESKEISSGTQGKLRVLAELICEHHPEPILIFTNDNATVYRISESFLIPAITHQTPVKERHEILTRFRQGEYKILVTSHVLNEGVDVPEAGIAIILSGTGSTREYIQRLGRVLRKGQQEDKRAILYEVIAENTTEEKTSQRRRGEQKNKTSYKTANRQLELLPSPPKKSFSFPKAAESSTPWVSSPESEEE
>CP011304.1|AKE66250.1|3890947_3891298_+|Pterin-4-alpha-carbinolamine-dehydratase
MTELAQQKCQPCQSGSSPITAEEITALQAKIPDWNLLEYEGIPRLQKLYKFANFQGAIAFTNAVGEAAEKEGHHPALLTEWGKVTVSWWTHDVGGLHQNDFIMAARTDDIYRQQKA
>CP011304.1|AKE66251.1|3891294_3892173_-|2-hydroxy-3-oxopropionate-reductase
MSQKIAFLGLGVMGAPMTTNLVRRGFAVNAWNRTPEAPGITIAGSSGANICSSIAAAVRDAEIVFTCVGDVPDVEAVILGPGGVMESAVVGTLVVDMSTIGSQAARMIGKKLEENNLRFLDAPVSGGDIGAKNGTLTIMVGGKEADFQTCLPCFQAMGKTIRWCGEIGNGQAVKLCNQVLGAVHMVALCEALKMAKIQGLDPNLVIEVCKTGAAGSWALENLGPKILAQDLQPAFMIEHILKDLRLVKETAQTAGEILPGTDLAETLFKVVAELDEGKGIKQGTQAMIRAYD
>CP011304.1|AKE66252.1|3892331_3894224_-|DNA-polymerase-IV
MLNELIYEGLGLSAVFGGLFLWSRSGLVSKNTALLVAQAQLQQSNSDLLAQVKGLDVAQSDLKDENQQLHAKIIYIEQHSAQLQHKATDLENSLQSLQQAVQIGEGEIEHLKTTAKEIEAEKAGLMEQLEREKAQITSLEAQIQTLEQQKGEINRQFDLTKKQTTSLYSQIQTLEQDKALLQQELEKAEELRAKVADLEHKNRELSDLAAQIPSLQGQIQTLEQNLAHQTEQYERGQQEIASLQGQISGLEREKKSLSEDLAASQTRSLSLGQECDNLTIKLQETVAQVTAITAEKDSLGAHLEAAKLELQALAAQKGELSAELTTAAEKIADLEGQLQELTQLPQQLADSQAKIAHLEGQLQELTQLPQQLADSQAKIAHLEGQLQELTQLPQQLETYRENISNLEIQLHQLSAEKDQLETTTSRHIEELSQQNRQLTQDLEVQKTAAKALEKEKIKFEGELATKQEEIAALEVKIQNLQQERDDFSRQTAPINTNEPEAIISETPVVEEPETPPVIAKETPVVAAEKIPVADTSLEVQPAAEIVQTSQESAENPLKGKSVVILGTFSKISREKAKSLIINVGGTVTGSPSANTDYILLGKAPGEKLKKAQKLGIKTISEAQFLQMVES
>CP011304.1|AKE66253.1|3894730_3894955_-|hypothetical-protein
MQLKLTKIFQKVPKGYIGFVEELPGANTQGETLEESRSNLEEAIELVLEANRMLAEEQLQGQEVIRESVTFWAA
>CP011304.1|AKE66254.1|3895696_3895915_-|HigA-protein-(antitoxin-to-HigB)
MSIAFFQDLIESVESLSIEDQDYLFELIRKRRIEKRRYEMAKNGEETLKSLAMGTAKKGSAEEIMAYLLDDE
>CP011304.1|AKE66255.1|3896159_3898211_-|Oligopeptidase-A
MTNTSNPLLAGQGLPAFDQIQPGLIVPGMTQLLQELARELTDLEAQIAPTWEKLVEPLTRIEERLSWSWGIIGHLMGVKNSPELRQAYETVQPQVVEFISRLSQSKPIYEAFLSLRQGESWGQLDEAQQRIVEASLRDAQLAGVGLVGEKKDRFNAIQLELAEITTKFSNNILDATKAFQLKLTTPEDIAGLPPSLLSLAAQTARTQGETNASSETGPWVITLDFPSYFPFMKYSDNRELREKLYKAYVSRADLGELDNNPLIDRILQLRQEQAHLLGYSTYAEVSLARKMANSVDEIEKLLDNLRQVSYEAAKQDLEALKTFAGTDDLKHWDIAYWSEKQRQAKFNFSAEELRPYFPLPRVLEGIFSLAKRIFAVEIIAADGQSPIWHPDVRYFQINDEKGEKIAYFYLDAYSRPAEKRGGAWMDVCIGRAKTGTEVRLPVAYLICNQTPPVDGNPSLMTFEEVTTLFHEFGHGLQHMLTTVDYSGAAGINNVEWDAVELPSQFMENWCYDRPTLMSMAKHYETGETLPEHYYQKLLLAKNYMSGSAMLRQLHLSLVDLELHHRYQPNGSETPKQVRQRLAATTTIIPPLPEDAFLCSFGHIFAGGYAAGYYSYKWAEVLSADAFAAFEEVGLDNEEAVKSIGRRFRDTVLAMGGSSHPMNVFKAFRGREPSTEPLLRHSGL
>CP011304.1|AKE66256.1|3898327_3898537_-|hypothetical-protein
MRNVNLNILNLLQSINNFCLSLSHIGLEVSILQVGRQYSGDRRQVLGVGVLVFWGFSSISPLPHLPTDH

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Crispr_ID: CP011304_26

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_26

4227228-4227340

TypeV-U4

Consensus_repeat	Method
AATTTGCGTTATTTCAGCTTCTATTTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP011304_26

>merge|CP011304|26|4227228-4227340|CRISPRCasFinder
AATTTGCGTTATTTCAGCTTCTATTTTCCAGTCAGTGCCTCTCCTGATATGTAGCCTATACTCAACGGATTTAGTATGATTGACGAATTTGCGTTATTTCAGCCTCTATTTTC

>CP011304|26|25|4227228-4227340|CRISPRCasFinder
AATTTGCGTTATTTCAGCTTCTATTTTC	CAGTCAGTGCCTCTCCTGATATGTAGCCTATACTCAACGGATTTAGTATGATTGACG
AATTTGCGTTATTTCAGCCTCTATTTTC

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE66567.1\|4216468_4216582_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE66575.1\|4227679_4228279_+\|DnaJ-domain-protein	unknown	unknown	gnl\|CDD\|99751
CP011304.1\|AKE66566.1\|4215502_4216222_+\|Methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274374
CP011304.1\|AKE66571.1\|4219823_4220933_-\|S-(hydroxymethyl)glutathione-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
CP011304.1\|AKE66565.1\|4214311_4215484_+\|DevC-protein	unknown	unknown	gnl\|CDD\|130253
CP011304.1\|AKE66581.1\|4233255_4234134_-\|Phycobilisome-rod-linker-polypeptide,-phycocyanin-associated	unknown	unknown	gnl\|CDD\|366093
CP011304.1\|AKE66570.1\|4219354_4219768_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378915
CP011304.1\|AKE66572.1\|4221379_4222033_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|335717
CP011304.1\|AKE66568.1\|4216578_4218501_-\|Cell-division-protein-FtsI-[Peptidoglycan-synthetase]	unknown	unknown	gnl\|CDD\|274573
CP011304.1\|AKE66579.1\|4230631_4231375_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226983
CP011304.1\|AKE66582.1\|4234402_4234891_-\|Phycocyanin-alpha-chain	unknown	unknown	gnl\|CDD\|271303
CP011304.1\|AKE66580.1\|4231441_4233118_-\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl\|CDD\|236465
CP011304.1\|AKE66578.1\|4229539_4230574_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234993
CP011304.1\|AKE66574.1\|4223545_4227109_+\|5-methyltetrahydrofolate--homocysteine-methyltransferase	unknown	unknown	gnl\|CDD\|273959
CP011304.1\|AKE66577.1\|4229319_4229448_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE66576.1\|4228281_4229283_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE66573.1\|4222276_4223407_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274252
CP011304.1\|AKE66584.1\|4235804_4235963_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE66583.1\|4234957_4235476_-\|Phycocyanin-beta-chain	unknown	unknown	gnl\|CDD\|271301
CP011304.1\|AKE66569.1\|4218923_4219358_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE66575.1\|4227679_4228279_+\|DnaJ-domain-protein	gnl\|CDD\|99751	cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.	6.57244e-07
CP011304.1\|AKE66566.1\|4215502_4216222_+\|Methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274374	TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.	7.83254e-145
CP011304.1\|AKE66571.1\|4219823_4220933_-\|S-(hydroxymethyl)glutathione-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
CP011304.1\|AKE66565.1\|4214311_4215484_+\|DevC-protein	gnl\|CDD\|130253	TIGR01185, membrane_spanning_subunit, DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids. [Transport and binding proteins, Other].	2.68668e-154
CP011304.1\|AKE66581.1\|4233255_4234134_-\|Phycobilisome-rod-linker-polypeptide,-phycocyanin-associated	gnl\|CDD\|366093	pfam00427, PBS_linker_poly, Phycobilisome Linker polypeptide.	1.70275e-76
CP011304.1\|AKE66570.1\|4219354_4219768_-\|hypothetical-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	3.37184e-05
CP011304.1\|AKE66572.1\|4221379_4222033_+\|hypothetical-protein	gnl\|CDD\|335717	pfam04313, HSDR_N, Type I restriction enzyme R protein N-terminus (HSDR_N). This family consists of a number of N terminal regions found in type I restriction enzyme R (HSDR) proteins. Restriction and modification (R/M) systems are found in a wide variety of prokaryotes and are thought to protect the host bacterium from the uptake of foreign DNA. Type I restriction and modification systems are encoded by three genes: hsdR, hsdM, and hsdS. The three polypeptides, HsdR, HsdM, and HsdS, often assemble to give an enzyme (R2M2S1) that modifies hemimethylated DNA and restricts unmethylated DNA.	0.00899157
CP011304.1\|AKE66568.1\|4216578_4218501_-\|Cell-division-protein-FtsI-[Peptidoglycan-synthetase]	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
CP011304.1\|AKE66579.1\|4230631_4231375_-\|hypothetical-protein	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	1.66919e-17
CP011304.1\|AKE66582.1\|4234402_4234891_-\|Phycocyanin-alpha-chain	gnl\|CDD\|271303	cd14770, PC-PEC_alpha, Alpha subunits of phycoerythrin and phycoerythrocyanin; phycobilisome rod components. phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC).	1.68834e-107
CP011304.1\|AKE66578.1\|4229539_4230574_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	0
CP011304.1\|AKE66574.1\|4223545_4227109_+\|5-methyltetrahydrofolate--homocysteine-methyltransferase	gnl\|CDD\|273959	TIGR02082, Methionine_synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase. This family represents 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), one of at least three different enzymes able to convert homocysteine to methionine by transferring a methyl group on to the sulfur atom. It is also called the vitamin B12(or cobalamine)-dependent methionine synthase. Other methionine synthases include 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase. [Amino acid biosynthesis, Aspartate family].	0
CP011304.1\|AKE66580.1\|4231441_4233118_-\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl\|CDD\|236465	PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase RibB/GTP cyclohydrolase II RibA.	0
CP011304.1\|AKE66573.1\|4222276_4223407_+\|hypothetical-protein	gnl\|CDD\|274252	TIGR02669, stage_II_sporulation_protein_D, SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General].	2.05198e-39
CP011304.1\|AKE66583.1\|4234957_4235476_-\|Phycocyanin-beta-chain	gnl\|CDD\|271301	cd14768, PC_PEC_beta, Beta subunits of phycoerythrin and phycoerythrocyanin; phycobilisome rod components. phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC).	1.82966e-105

>CP011304.1|AKE66574.1|4223545_4227109_+|5-methyltetrahydrofolate--homocysteine-methyltransferase
MNSPFLDYLNGPKHPVLVFDGAMGTSLQSQNLTAEDFGGAEYEGCNEYLVHTKPSAVAKVHEAFLAVGADVIETDTFGGTSIVLAEYDLADQAYYLNKTAAELAKACANKYSTPEKPRFVAGSMGPGTKLPTLGHIDFDTLKNAYVEQVEGLYDGGADLLLVETCQDVLQIKAALNAIEEVFQKKGQRLPLMVSVTMETMGTMLVGTEINAVVSILQPYKIDILGLNCATGPDLMKPHIKYLSENSPFIVSCIPNAGLPENVGGQAHYRLTPVELKMALMHFIEDLGVQIIGGCCGTRPDHIQALAELSQGLTPKSRHYHYEPSAASIYSTQPYIQDNSFLIVGEKLNASGSKKCRELLNVEDWDSLVSMAKAQVKEGAHILDVNVDYVGRDGVRDMHQLASRLVNNVTLPLMLDSTEWEKMEAGLKVAGGKCILNSTNYEDGESRFYQVLDLAKKYGAGVVIGTIDEEGMGRTAEKKFQIAKRAYYAAIEYGINPYEIFFDPLALPISTGIEEDRENGKATIEAMRRIRQELPECHILLGVSNISFGLNPAARQVLNSVFLHEAMQVGMDGAIVSANKILPLAKIEPEYQQVCRDLIYDNRRFDGDICVYDPLTKLTELFAGKTTKKDPSSNANLPVEERLKQHIIDGERLGLEEALKQALQDYPPLDIINIFLLDGMKVVGELFGSGQMQLPFVLQSAQTMKAAVAFLEPFMEKKEGDNNAKGTFIIATVKGDVHDIGKNLVDIILTNNGYRVINLGIKQPVENIIEAYKEHKADCIAMSGLLVKSTAFMKENLEVFNEKGITVPVILGGAALTPKFVHDDCQKTYKGQVIYGKDAFSDLHFMDKLMPAKAGGQWDDSKGFLAEFAEAEKTPVVAEELEVNPDTIFTDGTLDKELVIDTRRSEAVEVDIPRPTPPFWGTKILTAAEIPIEEVFWYLDLQALFVGQWQFRKPKSQSKQEYDQFLQEKVHPILTAWKEKIVKENLLNPTLIYGYFPCQSSGNSLLIYDPESIQAGEKPENLQPIAIFEFPRQKSGRRLCIADFFAPQESGIIDVFPMQAVTVGEIATEYAKSLFDANEYTEYLYYHGMAVQTAEAMAEWTHTRIRRELGFAEFDPDNIRDILQQRYQGSRYSFGYPACPNIQDQYKQLALLGCDRIGMYMDESEQLYPEQSTTAIITYHPTAKYFST
>CP011304.1|AKE66573.1|4222276_4223407_+|hypothetical-protein
MIKLDKKIKDGVIKVKFAASTYFSLLRHCAVPLLSIATFTPILLTYLAKEKPETPQPQANLETAASPAPIIPSPIAPLTAPSPKLSPSPQSSPLAPKKLAPSVQTSPNTSPNTAPAAAVKPVTRQPLLVPANYTPPVLEIRVAIKRDVASVLIGVNGPAVITDRQGRGLKTIATNEGLPVIPDAKGLKMGDLSLPEVIFVQPTSADGLVYVDDSWYRGKVLLVAQGDRLLVVNHVNLEAYLYSVVGSEMHSTAPMHALKAQAIAARSYALVHIIRPANAWFHLGNTQRWQVYKGIRSEYQSTHQAVNATAGQILSYKGGVVESLYAATDEIVAWAHGGRGMSQTGAYKLAEKGLDYQQILGNYYPGVGLARLVLQN
>CP011304.1|AKE66572.1|4221379_4222033_+|hypothetical-protein
MLIKEVNMVQILQAKEVTLRDLINHFQLEFVEDEHFFGEWQQDLKAISEQEKELLDKIKTGYFNLLNYPPFLETSVRMTVLDLLLFIGNFYLFPFQIKAEESVEIITEEQDLIIKGRLDTLILKEQLWVMIIESKRVIYSVEVGLPQLLAYLIVNPHPNRPNYGMLTNGSEFLFVKLLWDGKPLYGTSRLFAMRNPGDLYEVLKILKHLCQSSEGVE
>CP011304.1|AKE66571.1|4219823_4220933_-|S-(hydroxymethyl)glutathione-dehydrogenase
MDVRAAVALEAGKPLTIETVQLAAPQAGEVLVEIKATGVCHTDAYTLSGSDPEGLFPSILGHEGAGIVVEVGKGVTSLKVGDHVIPLYIPECRQCEYCLSFKTNLCQAIRLTQGRGVMPDGTSRFSLDGQPLYHYMGTSTFSNYTVLPEISLAKIRPDAPFEKVCYIGCGVTTGIGAVINTAKVEPGAKVVVFGLGGIGLNVIQGARLVGADMIVGVDINPQKQALATKFGMTHFVNPQEIEGDLVAYLVDLTKGGADYSFECIGNVQIMRQALECCHKGWGVATIIGVAGAGQEISTRPFQLVTGRVWKGTAFGGARGRTDVPKIVDWYMEGKINIDDLITHVLPLARINEAFDLMRQGDSIRSVITF
>CP011304.1|AKE66570.1|4219354_4219768_-|hypothetical-protein
MSAPVSCPQISIAGITEPIIYRYFQRLNAGEFAETARLFAEDGILIAPFEEGVRGRQAIANYLREEAPGLTAFPSQGSLETLDDQSTRITITGQVQTPLFKVNVRWQFQLTNSGEIAAVEVKLLASPRELINLRQFA
>CP011304.1|AKE66569.1|4218923_4219358_+|hypothetical-protein
MLEAFVLSPRYSLDAANWLEGIDPSRHYWLWVNGDPQLPVIIPGLIVSSIEELRTVIGQFRSLQPGESLKLTRIVGSCKIHCVSSNCYAIEARVDSALVWHLFDRETMESLLMAAHPDWLPGEKDLELGRKALMRSLNQPVYVP
>CP011304.1|AKE66568.1|4216578_4218501_-|Cell-division-protein-FtsI-[Peptidoglycan-synthetase]
MRNSGLLSKTKVKLKRKKTLTAPTRPAPNKLQNKIKDKERLVGRQRQSWLIMGLISIVLLGGVGSRLAYLQLQQGQINRERAENNRIRIIPKPPVRGNLFDRNGKVLATARLTHAAYIWPKSQRNPAQKLNLDRLASILAIPRSDLEKRINEADENPSTLIRIARGLTPSQIIALEEYKDELTGIEVDVESVRYYPNGKIGAHILGYTGELTPEEYQAKRRQGYRLGDVVGKMGVEAAYESKLRGEWGGMQLEVNGSGQVIQILGQKIAKPGQDVTLTLDLKLQKAAEAALGKRKGAIVAIDPRDGSVRAMVSYPSFDPNVFSAPITTATWKKLQAEGNPFVNRALQGFPPASTFKVVTATAGMESGKFPPNTVLNTFAALYVGGTAFGEWNRAGFGPMGFVRAMAMSSNTFHGQIGRGVGGPALIAMARRYGFGQKTGIELAEETPGLIADRDWKLRNFKNWDWSVGDTINMSIGQGFTLATPLQVAVMFAVPANGGFLVKPHLLQDARDVKEWRKSLNMKPSTLDTLRKSLRAVVAEGTGRALSDPALPPVAGKSGTAEAPPGKSHAWFGAFAPFDVAQGKPFDVAQGKPFDKPEIVVVAFAEHSGGGGGKVAAPMVRQVMEAYFNVKPKEEKPQPKP
>CP011304.1|AKE66567.1|4216468_4216582_+|hypothetical-protein
MEILKPVEGEILAIWAEKMATATVIAVRCVQRTATGL
>CP011304.1|AKE66566.1|4215502_4216222_+|Methionine-ABC-transporter-ATP-binding-protein
MPIFQKERELVDFSPNEPVIAIKGLNHYFGTGELKKQVLYDIDLEIKAGEVVIMTGPSGSGKTTLLSLMGGLRSAQAGSLKILGQEMLGISKGKMLKIRRQIGYIFQAHNLLKFLTAKQNVRMSLELHEEFLEQDLDQKATAILESVGLGDRVDYYPHDLSGGQKQRVAIARALVSHPKLVLADEPTAALDKQSGRDVVEIMQKLAKEQGCTILLVTHDNRILDIADRIVNMEDGRLGD
>CP011304.1|AKE66565.1|4214311_4215484_+|DevC-protein
MKLTHLFKKTPLSWLQVTREKTRLIVAIAGIAFADFLIFTQLGFRDALFDASVKPHYVLDADLVLINPQFDTLFAVKSFSRDRLYQAQRVEGIQSLASVYIASAQWRNPETALERTTLVFGFDPSQRVFTLPEVNQKSSDLKMLNRVLYDQAGRPEFGPIADLLQKNPDLTVQLNKKEVQVAGIFTLGASFAADSNVISSDSTFLRLFPERQPHEIDIGLVKLQAGANIEAVKVNLQALFPKNEVIVLTLKEFAEREKTYWANGTAIGFIFGLGTVVGFIVGIVIVYQILYSDVTDHLPEYATLKAMGYGDWYLVGVLMQEALLLAVLGYIPGFIVSLGVYNLASSATLLPIVMTTARAIEVLILTVIMCIASGIVAMGKLRTADPADIF
>CP011304.1|AKE66575.1|4227679_4228279_+|DnaJ-domain-protein
MTTNPLNSLILEQISHICEQYSIESRILEDFADFVIKNHRKKSPKPSLTKSKTTATTTVKKVKPLTLTQLKQAVYAYFEVNNTTELKKSSMFQMATRAFDNINLSQRESWEVIYRKYIGILPEEDYEQGKDCINGINIFKYFRPYRVFDLDPNTASKEDIKNAYYRLSKIYHPDNQETGNSHIFDRLTVMYKSITTEIK
>CP011304.1|AKE66576.1|4228281_4229283_+|hypothetical-protein
MPQKANTFLIRDTELAQWFSITLEKLEKIVDIFDADPNDDWDLVEGVDYQFVNKKDKVRVFSFEGALKIASYIEKNEKRGIIYRFREFFTKHDQKIRRSLARKLIFAELTDSGEIQVYKGRPMIHKQSLRRILKTNGTKLNKTVNHLQQRTDKPLELGVDFYEDEKREFWFSESGIVMISKSMSETLTNKSRQEMCKMIAMEFPLAFKEIQENLDDDTKQKIEIEKAKKRAKTRDKNTCQVTGQKPDRNNKFNLAVHHLYSAQKYPHLATLDLNLVTIKEEIHQEFHGNLGGFHQPCTIEDFIEFLHVYYPEHHGNLALKLQKTKKKLEKLAK
>CP011304.1|AKE66577.1|4229319_4229448_-|hypothetical-protein
MTIVANDLDAAVPREIGVLTQIFNKLIIAHDEMWSFFPSKNG
>CP011304.1|AKE66578.1|4229539_4230574_+|D-alanine--D-alanine-ligase
MFGGRSGEHEVSINSARSILQAFNYPENLDKYAVIPFYIDKNGCWHSAATARQILTSGQPLAIESDIKVNIWQFPPEVSEIEVWFPILHGPNGEDGTLQGLLTLMRVAFVGSGVLGSCLGMDKIAMKTAFAAAGLPQVKYKAITRSQVWSNACVFPQLCDQIAEEIGYPCFIKPANLGSSVGISKARNRQELEAALDSAASYDRRIIVEAGVTAREIECAVLGNDNPQASLVGEITFDSDFYDYETKYTDGRSSMVIPANIPDKIANQVREMAVEAFKAVDAAGLSRVDFFYVEKTGEVFLNEINTLPGFTNFSMYPQLWKATGLEFDKLVDKLVQLALERQEK
>CP011304.1|AKE66579.1|4230631_4231375_-|hypothetical-protein
MTTLDILPEVTCPPTDLWSDEPPLESDLHLQQITILIGCLERLWQERSNYYASGNLTIYYNEEQLKKRDFCGPDFFVVLDTEKHPRKSWVVWGEGGKYPNVIVEILSDSTANIDRNKKKNLYQNTFRTPNYFWFDPESLELQGFRLIAGQYQAIAANENGYLWSEQLELYLGIFDRKLRYFTVDGQLVPTPQEAELEQRQAKEQIFLEKEQERKAKEQAILEKEQAILEKEKLAQKLRELGIDPETI
>CP011304.1|AKE66580.1|4231441_4233118_-|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MPVTVTSIAFDSIDTALAEIKAGRAIVVVDDENRENEGDLICAAQFATPDLINFMAVQARGLICLAMTGERLDALELPLMVTKNTDSNQTAFTVSIDAAPHLGVKTGISAEDRAKTVQVAINPVTRPDDLTRPGHVFPIRAKAGGVLKRAGHTEAAVDLARLAGLYPAGVICEIQNPDGSMARLPQLFEYARQHNLKLISIADLISYRLKYDRFVHRETVCNFPSQFGTFQLYAYRNLLDQTEHIAIVKGDPALFGDQPVMVRMHSECLTGDALGSLRCDCRQQLQAALKMIENNGLGVVVYLRQEGRGIGLINKLKAYSLQDMGLDTVEANERLGFPADLRDYGMGAQMLNDLGVRNIRLITNNPRKIAGLKGYGLQIVERVPLLIEANDYNSNYLATKAEKLGHLFLQTYLVTIALSWGENPPSISQRYHQLEKLRELSRANQLSLQEETRPVANALFDRAPLIVHLGLDIRQGVSSNWYKNPSHPYLLVIDKILNDIKDWSEIERLEFLISDGDDSMTGLQMKLDRQKMSNEDLSQLPQLATQIIYSFTRDSTKN
>CP011304.1|AKE66581.1|4233255_4234134_-|Phycobilisome-rod-linker-polypeptide,-phycocyanin-associated
MAITTSASRLGTTAFSEVAPVELRPDWSRDDAQAVIRAVYRQVLGNDYIMRSERLTSAESLLCNGSITVREFVRAVAKSELYKNKFFYGNFQTRVIELNIKHLLGRAPYDESEVVYHLDLYENKGFEADIDSYIDSAEYTENFGDSIVPYYRGFASQPGQKTVGFTRMFQLYRGYANSDRSQIAGKTSRLAVELAQNGASAVVGPSGGSDGWAYRPSAQRNTPSKALGGSVAYGDVGKLYRVEIAAISKPGYPRVRRSSKAIIVPFEQLNNTLQQINRLGGKVASITPASLN
>CP011304.1|AKE66582.1|4234402_4234891_-|Phycocyanin-alpha-chain
MKTPLTEAVAAADSQGRFLSSTEIQVAFGRFRQASASLSAAKALTEKASQLTQGAAQAVYNKYPYTTQMQGANFAADQRGKDKCARDIGYYLRMVTYCLVAGGTGPMDEYLIAGIDEINRTFDLSPSWYIEALKYIKANHGLSGDPAVEANSYIDYAINALS
>CP011304.1|AKE66583.1|4234957_4235476_-|Phycocyanin-beta-chain
MFDAFTRVVSQADARGEYLSSSQLDALSAMVADSNKRMDSVNRITSNASTIVANAARSLFAEQPQLITPGGNAYTSRRMAACLRDMEIILRYVTYATFSGDGSVLDDRCLNGLRETYVALGVPGASVAAGVSKMKEAALSIANDRNGVTPGDCSALMSEIASYFDRAAAAVA
>CP011304.1|AKE66584.1|4235804_4235963_+|hypothetical-protein
MAQSLSPSGNQRQQGFKGIKGSKIENLSFFLYFPAFPSPIAQGLPFPALKLR

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Crispr_ID: CP011304_27

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_27

4254834-4254976

TypeV

Consensus_repeat	Method
GGTGGGTTACGGCGAATACTCAATTTTTAGTGAGAGTATAACTTATTTTCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP011304_27

>merge|CP011304|27|4254834-4254976|CRISPRCasFinder
GGTGGGTTACGGCGAATACTCAATTTTTAGTGAGAGTATAACTTATTTTCGCCGCACCCACCCTACAGATGATTACCTATGTGCTGATCTGGTGGGTTACGGCGAATACTCAATTTTTAGTCAGAGTATAACTTATTTTCGCC

>CP011304|27|26|4254834-4254976|CRISPRCasFinder
GGTGGGTTACGGCGAATACTCAATTTTTAGTGAGAGTATAACTTATTTTCGCC	GCACCCACCCTACAGATGATTACCTATGTGCTGATCT
GGTGGGTTACGGCGAATACTCAATTTTTAGTCAGAGTATAACTTATTTTCGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE66601.1\|4250286_4250940_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE66600.1\|4248275_4249724_-\|ATP-synthase-beta-chain	unknown	unknown	gnl\|CDD\|214349
CP011304.1\|AKE66603.1\|4252939_4253251_-\|Heat-shock-protein-60-family-co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
CP011304.1\|AKE66614.1\|4264525_4265509_+\|Glycosyltransferase-PglI	unknown	unknown	gnl\|CDD\|366154
CP011304.1\|AKE66597.1\|4246714_4247137_-\|Mutator-mutT-protein-(7,8-dihydro-8-oxoguanine-triphosphatase)	unknown	unknown	gnl\|CDD\|239517
CP011304.1\|AKE66611.1\|4261145_4262363_-\|Glycosyltransferase	unknown	unknown	gnl\|CDD\|274425
CP011304.1\|AKE66606.1\|4254625_4254742_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE66602.1\|4251267_4252893_-\|Heat-shock-protein-60-family-chaperone-GroEL	unknown	unknown	gnl\|CDD\|234573
CP011304.1\|AKE66608.1\|4257753_4259004_+\|S-adenosylmethionine-synthetase	unknown	unknown	gnl\|CDD\|235374
CP011304.1\|AKE66610.1\|4260131_4261094_-\|Glycosyltransferase	unknown	unknown	gnl\|CDD\|133030
CP011304.1\|AKE66607.1\|4255106_4257428_-\|ATP-dependent-DNA-helicase-UvrD/PcrA	unknown	unknown	gnl\|CDD\|273429
CP011304.1\|AKE66604.1\|4253387_4253525_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE66612.1\|4262365_4263325_-\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
CP011304.1\|AKE66609.1\|4259549_4260104_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|312763
CP011304.1\|AKE66605.1\|4254107_4254536_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372936
CP011304.1\|AKE66615.1\|4265641_4265998_+\|Dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
CP011304.1\|AKE66613.1\|4263339_4264260_-\|Glycosyl-transferase,-family-2	unknown	unknown	gnl\|CDD\|366154
CP011304.1\|AKE66616.1\|4265984_4266527_-\|FMN-reductase	unknown	unknown	gnl\|CDD\|377026
CP011304.1\|AKE66599.1\|4247784_4248201_-\|ATP-synthase-epsilon-chain	unknown	unknown	gnl\|CDD\|214351
CP011304.1\|AKE66598.1\|4247240_4247564_+\|putative-30S-ribosomal-protein-PSRP-3	unknown	unknown	gnl\|CDD\|235062

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE66600.1\|4248275_4249724_-\|ATP-synthase-beta-chain	gnl\|CDD\|214349	CHL00060, atpB, ATP synthase CF1 beta subunit.	0
CP011304.1\|AKE66603.1\|4252939_4253251_-\|Heat-shock-protein-60-family-co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	3.78596e-48
CP011304.1\|AKE66614.1\|4264525_4265509_+\|Glycosyltransferase-PglI	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	9.92131e-34
CP011304.1\|AKE66597.1\|4246714_4247137_-\|Mutator-mutT-protein-(7,8-dihydro-8-oxoguanine-triphosphatase)	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	6.94662e-56
CP011304.1\|AKE66611.1\|4261145_4262363_-\|Glycosyltransferase	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	4.45686e-57
CP011304.1\|AKE66610.1\|4260131_4261094_-\|Glycosyltransferase	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	2.7989e-95
CP011304.1\|AKE66609.1\|4259549_4260104_-\|hypothetical-protein	gnl\|CDD\|312763	pfam09367, CpeS, CpeS-like protein. This family, that includes CpeS proteins, is functionally uncharacterized.	6.46145e-53
CP011304.1\|AKE66608.1\|4257753_4259004_+\|S-adenosylmethionine-synthetase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
CP011304.1\|AKE66607.1\|4255106_4257428_-\|ATP-dependent-DNA-helicase-UvrD/PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
CP011304.1\|AKE66612.1\|4262365_4263325_-\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	5.86429e-162
CP011304.1\|AKE66602.1\|4251267_4252893_-\|Heat-shock-protein-60-family-chaperone-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
CP011304.1\|AKE66605.1\|4254107_4254536_-\|hypothetical-protein	gnl\|CDD\|372936	pfam14159, CAAD, CAAD domains of cyanobacterial aminoacyl-tRNA synthetase. This domain is present in aminoacyl-tRNA synthetases (aaRSs), enzymes that couple tRNAs to their cognate amino acids. aaRSs from cyanobacteria containing the CAAD (for cyanobacterial aminoacyl-tRNA synthetases appended domain) protein domains are localized in the thylakoid membrane. The domain bears two putative transmembrane helices and is present in glutamyl-, isoleucyl-, leucyl-, and valyl-tRNA synthetases, the latter of which has probably recruited the domain more than once during evolution.	1.43466e-40
CP011304.1\|AKE66615.1\|4265641_4265998_+\|Dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	6.10559e-38
CP011304.1\|AKE66613.1\|4263339_4264260_-\|Glycosyl-transferase,-family-2	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	3.98326e-31
CP011304.1\|AKE66616.1\|4265984_4266527_-\|FMN-reductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	3.88413e-45
CP011304.1\|AKE66599.1\|4247784_4248201_-\|ATP-synthase-epsilon-chain	gnl\|CDD\|214351	CHL00063, atpE, ATP synthase CF1 epsilon subunit.	1.26357e-60
CP011304.1\|AKE66598.1\|4247240_4247564_+\|putative-30S-ribosomal-protein-PSRP-3	gnl\|CDD\|235062	PRK02724, PRK02724, 30S ribosomal protein PSRP-3.	3.91121e-66

>CP011304.1|AKE66606.1|4254625_4254742_+|hypothetical-protein
MPILSDNFDSRRKVSQQLLRIKDLASQFYRQSDRNSLF
>CP011304.1|AKE66605.1|4254107_4254536_-|hypothetical-protein
MESMQPTETKNPIRTDLPGSLSKPSSSTEQIWSEYVEPVWDSVMSYLANVPDYIGSFFSGYKKPLIVLGAILASFVTVKVTLAVLDAIDDIPLLAPILQLVGIVYTGWFVWRYLLKDENRRELLAEIDALKAQVFGSHNNTL
>CP011304.1|AKE66604.1|4253387_4253525_-|hypothetical-protein
MLGTCALIMRHLAGLVLLQSDFLAGILFLRKSLTPPTNFLPQTLA
>CP011304.1|AKE66603.1|4252939_4253251_-|Heat-shock-protein-60-family-co-chaperone-GroES
MAAVSINVTTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIKLGGEEFVLLSEKDILAAVS
>CP011304.1|AKE66602.1|4251267_4252893_-|Heat-shock-protein-60-family-chaperone-GroEL
MAKSIIYNEDARRALEKGMDLLAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGITIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAHAIVKEGLRNVAAGANPISLKKGIDKAADFLVSQIAKHSKPVEDSKAIAQVGAISAGNDDEVGQMIASAMDKVGKEGVISLEEGKSMTTELEITEGMRFDKGYISPYFVTDTERMECVFEDPAILITDKKIGLVQDLVPILEQVARQGKPLVIIAEDIEKEALATLVVNRLRGVLNVTAVKAPGFGDRRKAMLEDIAVLTGGQVISEDAGLKLETTKIDSLGTARRITMNKDTTTIVAEGNDVAVKTRCEQIRRQIEETDSSYDKEKLQERLAKLAGGVAVIKVGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPQLETWAKETLHHEELTGALIVSRAIAAPLKRIAENAGQNGAVIAERVKEKPFNVGYNAATGEFSDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEKEKSAPPAGGGDFDY
>CP011304.1|AKE66601.1|4250286_4250940_-|hypothetical-protein
MSLVLAGISSSLVLMGGVNPVRAAVLIGNLPQTNDNNSNSISTSNVKALAFTLPAGNNYSLDNAILRLGGYATGETPLVQIRNDVGGSNPGSTVLASFTNPTPQGAGNFNYTFTPTSPLTFTAGTKYWLYVASTSGGFDWNASSPSKTPTGIATSSGTQFSNNSGTSFFPGGSFNSFQINATEITGPVASTPEPSVIAALSLFGLGLLGVKGRRNEG
>CP011304.1|AKE66600.1|4248275_4249724_-|ATP-synthase-beta-chain
MVATTETNVGKIVQIIGPVIDAEFPSGNLPRIYNALTVKGTNSAGQNLSVTCEVQQLLGDNQVRAVAMSTTDGLVRGMDIVDTGAAISVPVGKCTLGRIFNVLGEPVDEKGPVNVTETSPIHRPAPKLVDLEVTPTVFETGIKVIDLLTPYRQGGKIGLFGGAGVGKTVIMMELINNIAIQHGGVSVFGGVGERTREGNDLYNEMIESKVINADNPEESKIALVYGQMNEPPGARMRVGLSALTMAEYFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGDLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDGTTVLSRGLASKGIYPAVDPLGSTSTMLQADIVGDEHYGTARAVQSTLQRYKELQDIIAILGLDELSEEDRLTVDRARKIERFLSQPFFVAEVFTGSPGKYVTLADTIKGFQMILKGELDSLPEQAFYMVGSIDEAIAKGEKLKKG
>CP011304.1|AKE66599.1|4247784_4248201_-|ATP-synthase-epsilon-chain
MSITVRVITPDRIVWDNVAEEVILPSSTGQLGILSGHAPLLTALNIGVMRIRPGKDWENIAVLGGFAEVENNEIKVLVNGAELGSKIDKEKARAEYEKAQTRLDEVSKGDDRRKTIQAQQSWRKARARYQAAGGLVSV
>CP011304.1|AKE66598.1|4247240_4247564_+|putative-30S-ribosomal-protein-PSRP-3
MTVSSESKFILKVLWLDQNVAIAVDQVVGKGTSPLTAYFFWPRNDAWQQLQEELEAKHWIDESDRVDVLNKATEVINFWQELRNQGRQIPMADAQLKFPEVVFSGSN
>CP011304.1|AKE66597.1|4246714_4247137_-|Mutator-mutT-protein-(7,8-dihydro-8-oxoguanine-triphosphatase)
MIPETDSLASKQIGVAVIRDDRDLILIDRRLAKGLLGGFWEFPGGKIEGNETVQECIKREILEEIGIEIAVDSHLITIDHTYSHFRVNLQVYNCRYLSGEARAIECEEIRWVTIEELDHFTFPAANQEIIRALKDMVNSK
>CP011304.1|AKE66607.1|4255106_4257428_-|ATP-dependent-DNA-helicase-UvrD/PcrA
MTVTADYLEQLNPSQRLAVEHFCGPLLVVAGAGSGKTSALTYRIAHLIRHHGVDPENILAVTFTNKAAREMKTRIEKTFAQQKAQEKYGQRLELLEEYEQKKLFSQVYRNYTKKLWIGTFHSLCGRILRYDINKYQDEYGHSWQRNFSIMDESDAQSLVKNIVTKQMNLDDKKFDARNLRYAISNAKNLGLTPRDYARENPHFRGKVISEVYQAYQMQLAQNNALDFDDLILVPVRLFQQNESILGYWHTQFKHILVDEYQDTNQIQYELIRLLSTNGETKKSEWNWTDRSIFVVGDADQSIYSFRMADFTILLNFQADFGDGLPDDDTRTMVKLQENYRSRENILQAANKLIENNSQRIDKVLVPTREGGESIYVFKARDEQEEASFVIDKIREFTQENPELNWGSFAILYRINAQSRPFEDTLIRNNIPYNIVGGFKFYDRQEIKDAIAYLRVIANPADTVSLLRIINTPRRGIGKTTIDNLLKAAQELGVPLWEIISDETSVNTLAGRATKSINKLAKIIQNLQEKITDLSASEILDKIMEDSGYIDELKQQGTEEADTRIENIQELYSAVVQFQEENEETNLQEFLANASLASDLDNLQEGQEKVSLMTLHSAKGLEFPIVFLVGLEQGIFPHNRSLNDPIALEEERRLCYVGVTRAKEQLFLTYAKERYVWGNKETKVASQFLQELPPELLTSNLKPKKTPKVVPIQTTASNQRKWQVGDRVLHSTFGEGEVTHILGAGKKMNLAVKFSGLGQKIIDPRTAPMQLIHE
>CP011304.1|AKE66608.1|4257753_4259004_+|S-adenosylmethionine-synthetase
MSKRYLFTSESVTEGHPDKICDQISDTILDALLSQDDHSRVAAEVVVNTGLVLITGEITSKAQVHFVNLVRSKIAEIGYINADNGFSSNSCTVLVALDEQSPDISQGVTAAQENRELLSNDELDKIGAGDQGIVFGFACNETPEFMPLPISLAHRIARRLAAVRKTGELSYLRPDGKTQVSVIYEDGRPVGIDTILVSTQHDATIGDITDNDLVQQKIKSDLWEAVVQPVFSDLEIKPDANTRYLVNPTGKFVIGGPQGDAGLTGRKIIVDTYGGYSRHGGGAFSGKDPTKVDRSAAYACRYVAKNIVAAGLADKCEIQVGYAIGVARPVSVFVETFGTGKVADDVILDLINKYFELRPAGIIQTFNLRGLPSERGERFYQDVAAYGHFGRNDLDLPWEQTDKAAILKEALTSAVV
>CP011304.1|AKE66609.1|4259549_4260104_-|hypothetical-protein
MNTEIFQQFFAYCVGSWQTERTYHYLADQEVERSRTEFLIQPLTREIKQKVLTDNNYPDIADLESIPGFNLGFYTISEKGEEVRQNLNLLFVVKAENNGYLEGDYLRDRAYEEARPIISAFRFDSTTRELLMTTNYTRSVSVDSITLINPDLRIRKIINYQRPQQGEPLEKVLLVGFGVECKVS
>CP011304.1|AKE66610.1|4260131_4261094_-|Glycosyltransferase
MKISVVVPLYNEEENIDVLFRRLFAVLETINTSYEVVCVNDGSRDNTLKNLVEYHQRYPQIKVVNLSRNFGKDIAMSAGIDYSQGMAVIPIDADLQDPPELIAEMIEKWQQGYDVVYASRRVRIGESWLKRFTAEGFYQVINKLSRVPIPPNTGDFRLIDRRVVESIKKMPERQRFMKGIFAWVGYKQTSILFDREPRYQGQTKWNYWKLWNFAIDGITSFSFLPLKVWTYVGFIIAFISLVYASFLILRTIILGIDVPGYASLMVTVLFLGGIQLLTLGIIGEYIGRVYEEVKGRPLYLVRDCYGFENREQVTDKITQN
>CP011304.1|AKE66611.1|4261145_4262363_-|Glycosyltransferase
MNILMISSTFPYPPSKGGTQGRTFNLLKYLSKNHDITLIVQRTADVSDEEVEKLGKFVSELVVFPRPRDAKTGIISKLHRLAQFLQTGTPPNVLFGYSQEMQNWIDRAVKSQKFPVITSEHSVNEIYIRPQWKQQIRTVIDVHSSLYQTGKSQLEIGVSSQELRDRLYLPLLRRYEQKTVQKFSKIVVTTDDDQKQMEEFAPNGEIYLIPNAVDLDLFPYRTEDPSGHNLVFIGGLDYWVNIDAACFLAREILPRIQITYPDTTLTLVGANPSLEVQELTKLKGVIVTGRVPSMTTYLHQATVAVIPLRTGFGMKFKTLESMAAGVPVVASDRGLEGLTVEGNNVPLAALRANSIEEYCTAISSLFESAELREKLSRNARKLIEDNYTWQQAATKYEQVLVADIC
>CP011304.1|AKE66612.1|4262365_4263325_-|GDP-mannose-4,6-dehydratase
MSKKALICGISGQDGAYLAELLLKAGYTVCGTSRDAQMSSFSNLKRLGIKEQVKLESMALNDFRSVLQVLIKIQPDEVYNLAGQSSVGLSFEQPVETLESIATGTLNLLEAIRFTGAKIKLYNAGSSECFGDIGDNSADENTPFRPRSPYAVAKSAAFWEVANYREAYGIFACSGILFNHESPLRPERFVTQKIIAAVAKIARGSPDTLHLGNMDIQRDWGWAPEYVEAMYLMLQQEQPDDYVIATGESSKLEDFVATAFATVGLNWQDHVISDRSLLRPTDLAISRGNPHKAKEKLGWQARYKMTDIVRMMVENRLEE
>CP011304.1|AKE66613.1|4263339_4264260_-|Glycosyl-transferase,-family-2
MAPKIAGIICTYNRDHYLAAAIDSLLAQTCPDCEILVVDNASTDKTRQVVESRLGDGRLKYVYEPILGLSTARNRGAKETRAPILAYLDDDAIASPQWLQILLNAYENNQKLAVAGGKVTLIWPQGYSQPNWLSDQLAGGLGAFDLGDNVVYISQADLTPRGVNYSIRRDFWEKIGGFDPNLGRIGKKLLSNEELYTTELALAQGWQVGYFPAALVEHNVAPERINRQWFMRRSWWQGISEHYREEVAGKTGLAQFGRGGERLVRGLVKSVKFINDPAKSFDNLLYAYGQIGYLSEAAKAMLNPQK
>CP011304.1|AKE66614.1|4264525_4265509_+|Glycosyltransferase-PglI
MPKVTVCIPTYNRADYLSYSINSVLGQTYEDFELIVCDDGSSDRTPEVVTAFQDSRIIYLRHPQNLGRSLNMRSGFTAARGEYFIKFDDDDGLTPEFLAKTVPILDQEKNVDFVCTDHWIIDKFGQKVTAATQENSAKWGKDRLQKGIIPDLERQTFSYQSLQVGSTLFRYQSLADVDYMRPQADGCEDFDLLVRLALVGKQAYFLPELLMEYRFHGGQTSLKQAVHFLQAKLFCTESYQFNDLKLEEERVKKAAFLQESLGIKLIEKGETEAGRFLIEKASKLSGKSRRARLGLLLSYLPLNLRQLAFQGFRQLRPKDYAEQVRAV
>CP011304.1|AKE66615.1|4265641_4265998_+|Dihydroneopterin-aldolase
MDTIHVTGIRAYGYTGYLAEEQVLGQWFEVDLSLEVDISIAGKSDAIEDTLDYRQAIEIVKHQIETSKFALVEKLATVIAEDILKLEGVRQVRVQLSKPAAPIPNFTGKITIDITRSR
>CP011304.1|AKE66616.1|4265984_4266527_-|FMN-reductase
MIKIVGINGSLRSGSYSAMALEVAISRLGALGVETEIIDLRKLSLPFCNGGDDYSDYPDVAKMQQTVKSAAGLILATPEYHGSVSGVMKNALDLMSFEELSGKVAGLISVLGGQSNSNALNDLRIILRWVHAWVIPEQISLGQAWKVFNEEGKILDEKLSQRFDAFAQSLVDNTRKLNEI

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Crispr_ID: CP011304_29

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011304_29

4285765-4285900

TypeV

Consensus_repeat	Method
TATGGTATTAGCTAAAGTGGTTTTCGGTGCAGCCCCGACCAC	CRISPRCasFinder

1 spacers

RT,cas14j

The CRISPR arrays of CP011304_29

>merge|CP011304|29|4285765-4285900|CRISPRCasFinder
TATGGTATTAGCTAAAGTGGTTTTCGGTGCAGCCCCGACCACTAGATCAACTTTTTGACCCCTTTTGAGGATCATCAGGTTTCAGGTGTTTATCTATGGTATTAGCTAAAGTGGTTTTCGGTACAGCCCCGACCAC

>CP011304|29|28|4285765-4285900|CRISPRCasFinder
TATGGTATTAGCTAAAGTGGTTTTCGGTGCAGCCCCGACCAC	TAGATCAACTTTTTGACCCCTTTTGAGGATCATCAGGTTTCAGGTGTTTATC
TATGGTATTAGCTAAAGTGGTTTTCGGTACAGCCCCGACCAC

Protein	Signature genes	Signature genes Name	Protein_function
CP011304.1\|AKE66642.1\|4290755_4291628_+\|IS891/IS1136/IS1341-transposase	cas14j	-	gnl\|CDD\|223747
CP011304.1\|AKE66637.1\|4284595_4285744_+\|Rossmann-fold-nucleotide-binding-protein-Smf	unknown	unknown	gnl\|CDD\|223829
CP011304.1\|AKE66633.1\|4280712_4281348_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE66641.1\|4288507_4290268_+\|Retron-type-RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
CP011304.1\|AKE66630.1\|4277989_4278424_+\|Protein-of-unknown-function-DUF559	unknown	unknown	gnl\|CDD\|238509
CP011304.1\|AKE66643.1\|4291695_4292310_+\|Acetate-kinase	unknown	unknown	gnl\|CDD\|234680
CP011304.1\|AKE66646.1\|4293666_4293804_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE66629.1\|4275341_4277696_+\|serine/threonine-kinase	unknown	unknown	gnl\|CDD\|319862
CP011304.1\|AKE66634.1\|4281532_4282948_+\|Cobalamin-biosynthesis-protein-CobG	unknown	unknown	gnl\|CDD\|236573
CP011304.1\|AKE66644.1\|4292314_4292866_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE66631.1\|4278675_4279944_-\|Cobalt-precorrin-6y-C5-methyltransferase	unknown	unknown	gnl\|CDD\|225151
CP011304.1\|AKE66636.1\|4283580_4284285_+\|Cobalt-precorrin-2-C20-methyltransferase	unknown	unknown	gnl\|CDD\|180341
CP011304.1\|AKE66632.1\|4280007_4280655_+\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE66635.1\|4282957_4283584_+\|Cobalt-precorrin-8x-methylmutase	unknown	unknown	gnl\|CDD\|181352
CP011304.1\|AKE66639.1\|4286355_4286475_-\|hypothetical-protein	unknown	unknown	unknown
CP011304.1\|AKE66640.1\|4286786_4287776_-\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|372577
CP011304.1\|AKE66628.1\|4274964_4275081_-\|Protein-of-unknown-function-DUF820	unknown	unknown	gnl\|CDD\|235730
CP011304.1\|AKE66645.1\|4292979_4293636_-\|RNA-polymerase-sigma-70-factor	unknown	unknown	gnl\|CDD\|236608

Protein	Function_ID	Function_description	E-value
CP011304.1\|AKE66642.1\|4290755_4291628_+\|IS891/IS1136/IS1341-transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.83579e-52
CP011304.1\|AKE66637.1\|4284595_4285744_+\|Rossmann-fold-nucleotide-binding-protein-Smf	gnl\|CDD\|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	2.48968e-117
CP011304.1\|AKE66631.1\|4278675_4279944_-\|Cobalt-precorrin-6y-C5-methyltransferase	gnl\|CDD\|225151	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].	1.80645e-73
CP011304.1\|AKE66641.1\|4288507_4290268_+\|Retron-type-RNA-directed-DNA-polymerase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	3.59644e-123
CP011304.1\|AKE66630.1\|4277989_4278424_+\|Protein-of-unknown-function-DUF559	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	3.54072e-43
CP011304.1\|AKE66643.1\|4291695_4292310_+\|Acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	2.96194e-110
CP011304.1\|AKE66634.1\|4281532_4282948_+\|Cobalamin-biosynthesis-protein-CobG	gnl\|CDD\|236573	PRK09567, nirA, NirA family protein.	7.01329e-108
CP011304.1\|AKE66629.1\|4275341_4277696_+\|serine/threonine-kinase	gnl\|CDD\|319862	cd16383, GUN4, porphyrin-binding protein domain GUN4. GUN4 is a porphyrin-binding protein involved in chlorophyll biosynthesis regulation and intracellular signaling, found in aerobic photosynthetic organisms. It has been implicated in retrograde signalling between the chloroplast and nucleus. GUN4 can bind protoporphyrin IX (PIX) and magnesium protoporphyrin IX (MgPIX), substrate and product of the Mg-chelatase, as well as heme and cobalt protoporphyrin IX (CoPIX). It may play a role in protecting plants from reactive oxygen species (ROS)-mediated damage.	8.80676e-59
CP011304.1\|AKE66636.1\|4283580_4284285_+\|Cobalt-precorrin-2-C20-methyltransferase	gnl\|CDD\|180341	PRK05990, PRK05990, precorrin-2 C(20)-methyltransferase; Reviewed.	2.51971e-94
CP011304.1\|AKE66640.1\|4286786_4287776_-\|Mobile-element-protein	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.7635e-33
CP011304.1\|AKE66635.1\|4282957_4283584_+\|Cobalt-precorrin-8x-methylmutase	gnl\|CDD\|181352	PRK08285, cobH, precorrin-8X methylmutase; Reviewed.	3.66558e-128
CP011304.1\|AKE66645.1\|4292979_4293636_-\|RNA-polymerase-sigma-70-factor	gnl\|CDD\|236608	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.	1.33194e-83
CP011304.1\|AKE66628.1\|4274964_4275081_-\|Protein-of-unknown-function-DUF820	gnl\|CDD\|235730	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.	0.000315328

>CP011304.1|AKE66637.1|4284595_4285744_+|Rossmann-fold-nucleotide-binding-protein-Smf
MTDDRVYWLAWSSIAGVGPISLKRLYQHFGSVAVAWNASDSAIAEGAGFGKKLMVAVREGRSQIDPEALFAEHIQKNPLFWTPSDPEYPRFLREIPSPPPLLYYQGKVNLEENQGNIPTVAIVGTRNPTDHGRRWARRLSTLLAQQGFTIVSGMAEGIDGEAHQSCLKAGGRTIAVLGTGVDVVYPSRHRQLHADIQKQGLVISEHPAATQPNKAHFPSRNRIIAGLSRATIVIEAPERSGSLITASYANEFGGDIYALPNSPDIAAARGCLQLIHQGAEIIVSEEKLLEMLGAIPTTNQSAPLNLSPSLPLETSPAVNAAPPVNLEPRLAQVYQLFDRDALLFDIIVQKMQIPTSEVAGILLELELIGLVTQLPGMRYQKT
>CP011304.1|AKE66636.1|4283580_4284285_+|Cobalt-precorrin-2-C20-methyltransferase
MNKLGKLYGLGIGPGDPELLTLKAHRILTTVPVIAYPTLESGKVLARAIVSDFIRPEQIEIPMPLPFSVERSSQPHYDIAAENIAEHLNLGRDVAVLCVGDPMLYGTFMYIFNRLCDRFSIEVVPGISSVMASAAMLGVPITYRNDVFSIMPATLKAEILRDRLAFIDAAAIIKLGRHFAKVRDILEELGLLERALYIERATLPNQQIIPITEVDPEAATYWSLILIPSKTKPQ
>CP011304.1|AKE66635.1|4282957_4283584_+|Cobalt-precorrin-8x-methylmutase
MEYIKNGEEIYRKSFAIIRAETNWENLPDDLAHVAVRLIHSCGMTDITEDLEASPDAVKIGRNALAGGAAILCDSQMVANGITKARLPKNNPIICTLNHPEVTELARQINNTRSAAALELWRRHLAGAVVAIGNAPTALFRLLELLDQNVDKPALILGFPVGFVGAAESKIELATNSRGVPFITLHGRRGGSAIAAAAVNALAKENEL
>CP011304.1|AKE66634.1|4281532_4282948_+|Cobalamin-biosynthesis-protein-CobG
MNWLVEANACPGLFYGTAAQDGFLIRLRTPGGWLNSPQGKAIATWLEQWQTTIQVTNRANLQIRGLQKSPSLEEFQTLQKLGLAAHNPSIDHLRNIMSSPTAGIDCQESIDTRPLVQELDNFIQNYPSIAQLSPKFSIGIDGGGAVGIGTGSTMAWQHRYNEIQLSAIVLNNPKNLTSILCFRLALGGDKQLYDTDLLIEPENCLAVVKALVTVYIDYVQQNPNIKGKKPRMKHLLKDWGLTKYLEQVNYQLHRTSTGIIQGQEYQQAAHSTQPYFHLGIHPQKQPGLSYIGLSLRLGQLTANQLWGLAALSETFGSGQLRLTPWQTVILPDIPDEKVSELLPKLASLGLSASPGWDAGIVACSGKPGCAAAATATQIHASLLADYLKEHLTCNSPVNIHLTGCAKSCAQPGPAEITLLGTTIEENGQILEAYQVYMGDSQKFLETPIFEGEFTKIPPLIAQILSSQKSKI
>CP011304.1|AKE66633.1|4280712_4281348_+|hypothetical-protein
MTTTADDVWKLLAELVEAQKETERCFQETERRFQETERILKEQSLETERILKEQSLKTDRQITRLSKEIGNLGGKWGRFVENMVAPACETLFLNRQIPVHQVSQRVRKRLDGKTLEIDVLVTNENHVLVVEVKSSLSVDDVKELIKNLTEFRQFFPEYNQKQLYGAVAGIEIEEGADKYAYRQGLFVLAQRGENVAILNDTEFQPKTWYDP
>CP011304.1|AKE66632.1|4280007_4280655_+|hypothetical-protein
MTTTADDVWKLLAELVEAQKETERCFQETERRFQETERVLKEQSLKTERRFQETERILKEQSLKTDRQITRVSQEIGNLGGKWGRFVENMVAPACETLFLNRDIPVHQVSQRVRKRLDGKTLEIDVLVTNENHVLVVEVKSSLSVDDVKELIKNLTEFRQFFPEYNQKQLYGAVAGIEIEEGADKYAYRQGLFVLAQRGENVAILNDTEFQPKTW
>CP011304.1|AKE66631.1|4278675_4279944_-|Cobalt-precorrin-6y-C5-methyltransferase
MADNEIVAIFFNMADRNCKSKWLSIIGIGEDGLEGLSSVGRSLLSLASVIVGGERHLAMLPPEDQRQKLLWTSPIQDSVNEIIRRRGQSVCVLASGDPMCYGIGVTLTRQIPLEEMTIIPSPSAFSLACSRLGWSLSEVETLSLCGRPPACLNGVLYPGAKLLVLSADAQTPALAARLLREGGFGESSITVLEHLGGTRERHIQGIANDWQFTDLADLNVIAISCISSHPPTLAPRLPGLPDSAYHHDGQLTKREVRAITLSRLAPLPGQLLWDVGAGCGSIAIEWLRSDRRCQGIAIEHHPTRLQYIADNAAALGTLHLQIVAGIAPSALEDLPQPDAIFIGGGITTPHLLETCWLALRPGGRLVANTVTIESELVLLQWHSKLGGELLRIGIEKAEPVGKFLGWKAMAPVTQWTVLKPRL
>CP011304.1|AKE66630.1|4277989_4278424_+|Protein-of-unknown-function-DUF559
MQLTNHHHLPYNPKLVERAKELRKNMTKAERKLWYEYLKNFQYRVHRQRPIDQFIVDFYCPELKLVIEIDGDIHNREDAQNYDLERTQILSGYGLTVIRFTNQEVLSNFEGVCGVIGSLIPPTPLDKGGFDPSLLRGFDPPNPP
>CP011304.1|AKE66629.1|4275341_4277696_+|serine/threonine-kinase
MDDKTTKPEASESEEKKESDFDQEKEQAQVWTGKITAFVAHQLRTSAPSLPIIGGSITGILTWLSQHDTVKAIIVGGVTFIVTGFFTYGSAWSQGFLEIARTKGKNHGKGSALSFFVWLDKGLEKIRWQLANPDGKYLIKLRDSDCRYDDIEGIEDAIFGFSTPELEEIFINLDLSQLELRSEEESKGTGDDIWDLLRRAKKRTNLRLLILAPGGRGKTTLLRHLAYNYALKQPKQNAPFLIPVFLRLRRWQEVITTTEGLDLPTLIERHLKQDISQELDLPQHWAKSHLTRQRMLVMFDGFDEVKPEYAEKISQWIGKQWHDFRQNYFILTSRPKGYQAFSSEHKPRQKVFINEFTDKNIHDFVYKWYFWQEQETRVSRSLKAKQEAADNKAKDLINQLFALDDSGESSTLLALARNPLNLNMIVQLHRANFGSEQKLPQQRVDLFRRIFDLQLITRPQARGIDMILDNNEENHRQRVLQQLALKMGNTTTIEYSELLSSIQNFIQELGYPESTSAKDFVERLIHVSELILKKDEYYEFAHNLFQSYLIALEIKRLKQENLLWENWEQNLWYETCIMYATLLTNPTDFIVYFYNQSNPKAQGLAERCYRELPVKKRRGLEFLEQRRQTSLFTQLETYLKNGQWREADEETARLMLLIAKREDEGWLDEESAENFPCEELRTIDKLWVDNSGSKFGFSVQKKVWLDCGGVPGEYDYDVYKKFADEVGWRRSGNWLSYDELTFSLEGSQHAYLPSPWWRVVGRTPGGGVGRRVWWRVSLFSRSDL
>CP011304.1|AKE66628.1|4274964_4275081_-|Protein-of-unknown-function-DUF820
MLLFYPDGQAFTSYNQEKQRAERLANKLRELGINPDEI
>CP011304.1|AKE66639.1|4286355_4286475_-|hypothetical-protein
MTFGVFLQENFIWLPSPMLDSGNITKLYQKKVKIEPLGL
>CP011304.1|AKE66640.1|4286786_4287776_-|Mobile-element-protein
MKNYTWEYIQKYPKQTKRLLGIDYQQLEQLMALGKLIHRKNQSEIEKTKIRINQPGSGTPPKLSEEEQIVLMLVYLRHHLSFQILGLIFQVSESTAHNIFTYWQKLFEGELPPSLLEQIKKCQEEEIIIEQLRDYELIVDSAEQPVERPTDYQEQKIYYSGKQKRHTLKSQFIVLPKAEDIVDVVIGQPGPTSDIKICRQTLSKFDSQQTFIGDKAYLGENQIRTPDKKPKNGELTENQIKENKVLSSRRIFVEHLIRVVKVFKVVQERFRLNKSRYKSVLLTVCGLVRLRISALILEVIEGEQSGEVIDVIISHSFPSKLDFVSSNPD
>CP011304.1|AKE66641.1|4288507_4290268_+|Retron-type-RNA-directed-DNA-polymerase
MVLSSNEKVMNTATKPMYEWKDINWRKAERCVFKLSKRIFKASQRGDVKLVHKLQRLLLKSWYAKLIAVRRVSQDNQGKKTAGVDGIKSLTPKQRMALVNNLKPGNKSKPTRRVWIPKPNTDEKRPLGIPTMYERALQALVKLALEPEWEAKFEPNSYGFRPARSAHDAIGAIYISINKKPKYVLDADISKCFDKINHQKLLTKLQTYPKLRQQIKAWLKSGVMDGKNLFPTNEGTPQGGVISPLLANIALHGMEERVKQYAKTLKGNKSKNEQALTLIRYADDFVILHEDLKVIKECQEIIKQWLAEMGLELKPSKTRISHTLETYDDYVGFDFLGFNIRQYQVGKHHGAKSSKGVKLGFKTLIKPSAEKVKSHLKKLGEVVNSQKSSPQDALIKRLNPIIRGWSNYYSSVVSSKTFTDCDYYFFEKLKRWAYRRHPMKNKTWIMRKYWHTEGKDNWVFSTRGGKNPFKLARHLDTKIVRYVKVKGDKSPYDGDLIYWSSRMGKHPEMPPEKAILLKRQQGRCAYCGLYFQDGDILETDHIIPKSKGGKNNRDNKQLLHRHCHDSKTALDKTGTHDKEPLERGAV
>CP011304.1|AKE66642.1|4290755_4291628_+|IS891/IS1136/IS1341-transposase
MLLRYLPKIGEVHCQVSRQPEGDLKSVTVSVNPSGEYFASCLYDDGQDLPQKLTEGKTIGIDVGLTHFAITSDGTKHGNPQYYRKYEQRLARRQKKLSRKQKGSNNRNKARVKVAKVHSKIVRCREDFLHKLSRKLVDENQVIVIENLAVRNMIKNQNLAKSISDAGWGQFCTMLKYKAEWEGKIYLEVNRFFPSSKTCSNCLNRVDSLSLDIRSWQCPKCGETHDRDINAAKNIRDEGLRILAVGHTATASGGRVRPSKGTAFARHLPVNEESLASVLRGVSTHSLPMD
>CP011304.1|AKE66643.1|4291695_4292310_+|Acetate-kinase
MLGKPLESLKMVICHLGNGASLSAVKGGKSIDTTMGFTPLEGLMMGTRSGTINPVILIYLEREYQYNPDILKILLHKESGLKEISGISGDMRAITTAMAEGNQRAKLAFEMYIHRLKSLIGSMIASLEGLDVLVFTAGIGENSALVREKASQGWSFLGLELDLAKNAAHPRDEDIATDTSKVRVMVIATAEDSAIARECWHLSP
>CP011304.1|AKE66644.1|4292314_4292866_-|hypothetical-protein
MNNYQPEDVQWIKSLLRHDEGDSNPATEDILFLDEDNEEAHRFDLISAYIDNEVTVEERKLVQHWLDHDAAAKKLYRQLLGLQTNLKQIPVPVAMAGDRLAEQVFRKVDGQRRRQYYVYGGAIFTAMAIAVSSYFISGRNDPLSQMASGPGSISQEGDHLMIALNHPIMEIPTTEQPKENGQR
>CP011304.1|AKE66645.1|4292979_4293636_-|RNA-polymerase-sigma-70-factor
MSQSIPASWSLEAKKSQNPLSPDKLSNYDLIARCQEGCQPDRAAFAELLRRYQAHVDKLLYHLAPDWQDRADLAQEVWIRVYRNINRLHEPLKFRGWLSRIATNLFYDELRKRKRVNHPISLDAPRRVEDGEIDWDIESDYPSPDEHLTTHEFYDQLQAAIADLPEAFRTTIILREIEGMAYEEIAEITGVSLGTVKSRIARARAKLQSVLQPYFTEG
>CP011304.1|AKE66646.1|4293666_4293804_-|hypothetical-protein
MNAPLKSQSSNYQPDSDRFDQLESRYRKKIIYFREPLLTSPVLKP

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP011304_1	1.2\|142777\|18\|CP011304\|CRISPRCasFinder	142777-142794	18	CP011304.1	1550360-1550377	0	1.0
CP011304_25	25.1\|3885631\|42\|CP011304\|CRISPRCasFinder	3885631-3885672	42	CP011304.1	1117009-1117050	0	1.0
CP011304_25	25.1\|3885631\|42\|CP011304\|CRISPRCasFinder	3885631-3885672	42	CP011304.1	1709798-1709839	0	1.0
CP011304_25	25.1\|3885631\|42\|CP011304\|CRISPRCasFinder	3885631-3885672	42	CP011304.1	1826634-1826675	0	1.0
CP011304_25	25.1\|3885631\|42\|CP011304\|CRISPRCasFinder	3885631-3885672	42	CP011304.1	2450803-2450844	0	1.0
CP011304_25	25.1\|3885631\|42\|CP011304\|CRISPRCasFinder	3885631-3885672	42	CP011304.1	2830001-2830042	0	1.0
CP011304_25	25.1\|3885631\|42\|CP011304\|CRISPRCasFinder	3885631-3885672	42	CP011304.1	3428726-3428767	0	1.0
CP011304_25	25.1\|3885631\|42\|CP011304\|CRISPRCasFinder	3885631-3885672	42	CP011304.1	3485185-3485226	0	1.0
CP011304_1	1.2\|142777\|18\|CP011304\|CRISPRCasFinder	142777-142794	18	CP011304.1	15976-15993	1	0.944
CP011304_1	1.2\|142777\|18\|CP011304\|CRISPRCasFinder	142777-142794	18	CP011304.1	287292-287309	1	0.944
CP011304_1	1.2\|142777\|18\|CP011304\|CRISPRCasFinder	142777-142794	18	CP011304.1	287306-287323	1	0.944
CP011304_1	1.2\|142777\|18\|CP011304\|CRISPRCasFinder	142777-142794	18	CP011304.1	675528-675545	1	0.944
CP011304_1	1.2\|142777\|18\|CP011304\|CRISPRCasFinder	142777-142794	18	CP011304.1	742640-742657	1	0.944
CP011304_1	1.2\|142777\|18\|CP011304\|CRISPRCasFinder	142777-142794	18	CP011304.1	1079141-1079158	1	0.944
CP011304_1	1.2\|142777\|18\|CP011304\|CRISPRCasFinder	142777-142794	18	CP011304.1	1282067-1282084	1	0.944
CP011304_1	1.2\|142777\|18\|CP011304\|CRISPRCasFinder	142777-142794	18	CP011304.1	1307434-1307451	1	0.944
CP011304_1	1.2\|142777\|18\|CP011304\|CRISPRCasFinder	142777-142794	18	CP011304.1	2065989-2066006	1	0.944
CP011304_1	1.2\|142777\|18\|CP011304\|CRISPRCasFinder	142777-142794	18	CP011304.1	2714191-2714208	1	0.944
CP011304_1	1.2\|142777\|18\|CP011304\|CRISPRCasFinder	142777-142794	18	CP011304.1	2731412-2731429	1	0.944
CP011304_1	1.2\|142777\|18\|CP011304\|CRISPRCasFinder	142777-142794	18	CP011304.1	3173703-3173720	1	0.944
CP011304_14	14.1\|2271815\|47\|CP011304\|CRISPRCasFinder	2271815-2271861	47	CP011304.1	313569-313615	1	0.979
CP011304_22	22.27\|3603206\|35\|CP011304\|CRISPRCasFinder,CRT	3603206-3603240	35	CP026286.1	5231-5265	1	0.971
CP011304_25	25.1\|3885631\|42\|CP011304\|CRISPRCasFinder	3885631-3885672	42	CP011304.1	1457212-1457253	1	0.976
CP011304_25	25.1\|3885631\|42\|CP011304\|CRISPRCasFinder	3885631-3885672	42	CP011304.1	2879271-2879312	1	0.976
CP011304_25	25.1\|3885631\|42\|CP011304\|CRISPRCasFinder	3885631-3885672	42	CP011304.1	3960102-3960143	1	0.976
CP011304_25	25.1\|3885631\|42\|CP011304\|CRISPRCasFinder	3885631-3885672	42	CP011304.1	4119955-4119996	1	0.976

1. spacer 1.2|142777|18|CP011304|CRISPRCasFinder matches to position: 1550360-1550377, mismatch: 0, identity: 1.0

tccccacttcccactccc	CRISPR spacer
tccccacttcccactccc	Protospacer
******************

2. spacer 25.1|3885631|42|CP011304|CRISPRCasFinder matches to position: 1117009-1117050, mismatch: 0, identity: 1.0

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
******************************************

3. spacer 25.1|3885631|42|CP011304|CRISPRCasFinder matches to position: 1709798-1709839, mismatch: 0, identity: 1.0

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
******************************************

4. spacer 25.1|3885631|42|CP011304|CRISPRCasFinder matches to position: 1826634-1826675, mismatch: 0, identity: 1.0

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
******************************************

5. spacer 25.1|3885631|42|CP011304|CRISPRCasFinder matches to position: 2450803-2450844, mismatch: 0, identity: 1.0

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
******************************************

6. spacer 25.1|3885631|42|CP011304|CRISPRCasFinder matches to position: 2830001-2830042, mismatch: 0, identity: 1.0

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
******************************************

7. spacer 25.1|3885631|42|CP011304|CRISPRCasFinder matches to position: 3428726-3428767, mismatch: 0, identity: 1.0

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
******************************************

8. spacer 25.1|3885631|42|CP011304|CRISPRCasFinder matches to position: 3485185-3485226, mismatch: 0, identity: 1.0

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
******************************************

9. spacer 1.2|142777|18|CP011304|CRISPRCasFinder matches to position: 15976-15993, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacaccc	Protospacer
************** ***

10. spacer 1.2|142777|18|CP011304|CRISPRCasFinder matches to position: 287292-287309, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttccctctccc	Protospacer
************ *****

11. spacer 1.2|142777|18|CP011304|CRISPRCasFinder matches to position: 287306-287323, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttccctctccc	Protospacer
************ *****

12. spacer 1.2|142777|18|CP011304|CRISPRCasFinder matches to position: 675528-675545, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacttcc	Protospacer
***************.**

13. spacer 1.2|142777|18|CP011304|CRISPRCasFinder matches to position: 742640-742657, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacttcc	Protospacer
***************.**

14. spacer 1.2|142777|18|CP011304|CRISPRCasFinder matches to position: 1079141-1079158, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacttcc	Protospacer
***************.**

15. spacer 1.2|142777|18|CP011304|CRISPRCasFinder matches to position: 1282067-1282084, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacttcc	Protospacer
***************.**

16. spacer 1.2|142777|18|CP011304|CRISPRCasFinder matches to position: 1307434-1307451, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccactccccactccc	Protospacer
********.*********

17. spacer 1.2|142777|18|CP011304|CRISPRCasFinder matches to position: 2065989-2066006, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacttcc	Protospacer
***************.**

18. spacer 1.2|142777|18|CP011304|CRISPRCasFinder matches to position: 2714191-2714208, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacaccc	Protospacer
************** ***

19. spacer 1.2|142777|18|CP011304|CRISPRCasFinder matches to position: 2731412-2731429, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacttcc	Protospacer
***************.**

20. spacer 1.2|142777|18|CP011304|CRISPRCasFinder matches to position: 3173703-3173720, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacaccc	Protospacer
************** ***

21. spacer 14.1|2271815|47|CP011304|CRISPRCasFinder matches to position: 313569-313615, mismatch: 1, identity: 0.979

taaacagtaaacagtaatcagtgagacactgttgatgggagtttttt	CRISPR spacer
taaacagtaaacagtaatcagtgagacactgttgatggaagtttttt	Protospacer
**************************************.********

22. spacer 22.27|3603206|35|CP011304|CRISPRCasFinder,CRT matches to position: 5231-5265, mismatch: 1, identity: 0.971

atctaactgtgacactttgagaattggcactcgat	CRISPR spacer
atctaactgtgacactttgagaattggcacttgat	Protospacer
*******************************.***

23. spacer 25.1|3885631|42|CP011304|CRISPRCasFinder matches to position: 1457212-1457253, mismatch: 1, identity: 0.976

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactaaaaaa	Protospacer
************************************.*****

24. spacer 25.1|3885631|42|CP011304|CRISPRCasFinder matches to position: 2879271-2879312, mismatch: 1, identity: 0.976

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
ttcactggacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
**.***************************************

25. spacer 25.1|3885631|42|CP011304|CRISPRCasFinder matches to position: 3960102-3960143, mismatch: 1, identity: 0.976

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactgagaaa	Protospacer
**************************************.***

26. spacer 25.1|3885631|42|CP011304|CRISPRCasFinder matches to position: 4119955-4119996, mismatch: 1, identity: 0.976

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactgaacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
*******.**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP011304_20	20.1\|3542043\|41\|CP011304\|CRISPRCasFinder	3542043-3542083	41	NZ_CP025929	Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence	60561-60601	0	1.0
CP011304_22	22.3\|3601486\|36\|CP011304\|CRISPRCasFinder,CRT	3601486-3601521	36	NC_001597	Microcystis aeruginosa plasmid pMA2 DNA, complete sequence	612-647	1	0.972
CP011304_22	22.27\|3603206\|35\|CP011304\|CRISPRCasFinder,CRT	3603206-3603240	35	NZ_CP026286	Microcystis aeruginosa NIES-2549 plasmid p1, complete sequence	5231-5265	1	0.971
CP011304_22	22.47\|3604646\|34\|CP011304\|CRISPRCasFinder,CRT	3604646-3604679	34	NC_001597	Microcystis aeruginosa plasmid pMA2 DNA, complete sequence	614-647	1	0.971
CP011304_24	24.10\|3611357\|34\|CP011304\|PILER-CR,CRISPRCasFinder,CRT	3611357-3611390	34	LC425515	Uncultured phage DNA, contig: NODE375	16260-16293	1	0.971
CP011304_24	24.23\|3612296\|35\|CP011304\|PILER-CR,CRISPRCasFinder,CRT	3612296-3612330	35	LC425515	Uncultured phage DNA, contig: NODE375	17435-17469	1	0.971
CP011304_13	13.2\|2096461\|22\|CP011304\|CRISPRCasFinder	2096461-2096482	22	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	575151-575172	2	0.909
CP011304_24	24.8\|3611215\|34\|CP011304\|PILER-CR,CRISPRCasFinder,CRT	3611215-3611248	34	LC425515	Uncultured phage DNA, contig: NODE375	16292-16325	2	0.941
CP011304_22	22.4\|3601559\|34\|CP011304\|CRISPRCasFinder,CRT	3601559-3601592	34	NC_001597	Microcystis aeruginosa plasmid pMA2 DNA, complete sequence	3851-3884	3	0.912
CP011304_22	22.5\|3601630\|35\|CP011304\|CRISPRCasFinder,CRT	3601630-3601664	35	LC425518	Uncultured phage DNA, contig: NODE577	10228-10262	3	0.914
CP011304_22	22.32\|3603567\|34\|CP011304\|CRISPRCasFinder,CRT	3603567-3603600	34	NZ_CP026286	Microcystis aeruginosa NIES-2549 plasmid p1, complete sequence	4896-4929	3	0.912
CP011304_22	22.60\|3605575\|33\|CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605575-3605607	33	NZ_CP026286	Microcystis aeruginosa NIES-2549 plasmid p1, complete sequence	1301-1333	3	0.909
CP011304_2	2.1\|455996\|28\|CP011304\|CRISPRCasFinder	455996-456023	28	MG592600	Vibrio phage 1.236.O._10N.261.52.C4, partial genome	19899-19926	6	0.786
CP011304_22	22.50\|3604859\|34\|CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	KM359505	Prochlorococcus phage P-TIM68, complete genome	142848-142881	6	0.824
CP011304_22	22.58\|3605432\|34\|CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605432-3605465	34	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	66570-66603	6	0.824
CP011304_22	22.58\|3605432\|34\|CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605432-3605465	34	NZ_LR027520	Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence	338425-338458	6	0.824
CP011304_22	22.58\|3605432\|34\|CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605432-3605465	34	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	168234-168267	6	0.824
CP011304_28	28.1\|4280151\|26\|CP011304\|CRISPRCasFinder	4280151-4280176	26	NZ_CP049700	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence	172136-172161	6	0.769
CP011304_22	22.10\|3601988\|33\|CP011304\|CRISPRCasFinder,CRT	3601988-3602020	33	NC_002679	Mesorhizobium japonicum MAFF 303099 plasmid pMLa, complete sequence	151254-151286	7	0.788
CP011304_22	22.50\|3604859\|34\|CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	HQ633071	Synechococcus phage S-SKS1 genomic sequence	23104-23137	7	0.794
CP011304_24	24.9\|3611286\|34\|CP011304\|PILER-CR,CRISPRCasFinder,CRT	3611286-3611319	34	LC425515	Uncultured phage DNA, contig: NODE375	18824-18857	7	0.794
CP011304_13	13.1\|2096407\|31\|CP011304\|CRISPRCasFinder	2096407-2096437	31	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	729906-729936	8	0.742
CP011304_13	13.1\|2096407\|31\|CP011304\|CRISPRCasFinder	2096407-2096437	31	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	730376-730406	8	0.742
CP011304_22	22.20\|3602708\|34\|CP011304\|CRISPRCasFinder,CRT	3602708-3602741	34	NC_014824	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence	159295-159328	8	0.765
CP011304_22	22.35\|3603781\|34\|CP011304\|CRISPRCasFinder,CRT	3603781-3603814	34	MK016664	Synechococcus phage S-B68, complete genome	7447-7480	8	0.765
CP011304_22	22.41\|3604212\|34\|CP011304\|CRISPRCasFinder,CRT	3604212-3604245	34	NC_004959	Lactococcus lactis W-37 plasmid pSRQ900, complete sequence	4719-4752	8	0.765
CP011304_22	22.41\|3604212\|34\|CP011304\|CRISPRCasFinder,CRT	3604212-3604245	34	NZ_CP034186	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence	398391-398424	8	0.765
CP011304_22	22.41\|3604212\|34\|CP011304\|CRISPRCasFinder,CRT	3604212-3604245	34	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	194212-194245	8	0.765
CP011304_22	22.51\|3604930\|34\|CP011304\|CRISPRCasFinder,CRT	3604930-3604963	34	CP003352	Enterococcus faecium Aus0004 plasmid AUS0004_p1, complete sequence	49423-49456	8	0.765
CP011304_22	22.51\|3604930\|34\|CP011304\|CRISPRCasFinder,CRT	3604930-3604963	34	NZ_LR135294	Enterococcus faecium isolate E7237 plasmid 2	97964-97997	8	0.765
CP011304_22	22.51\|3604930\|34\|CP011304\|CRISPRCasFinder,CRT	3604930-3604963	34	NC_021995	Enterococcus faecium Aus0085 plasmid p2, complete sequence	58959-58992	8	0.765
CP011304_22	22.51\|3604930\|34\|CP011304\|CRISPRCasFinder,CRT	3604930-3604963	34	NZ_LR135193	Enterococcus faecium isolate E4438 plasmid 3	58722-58755	8	0.765
CP011304_22	22.51\|3604930\|34\|CP011304\|CRISPRCasFinder,CRT	3604930-3604963	34	NZ_LT598666	Enterococcus faecium isolate Ef_aus00233 plasmid 4	64296-64329	8	0.765
CP011304_22	22.51\|3604930\|34\|CP011304\|CRISPRCasFinder,CRT	3604930-3604963	34	NZ_LR135204	Enterococcus faecium isolate E7171 plasmid 2	205040-205073	8	0.765
CP011304_22	22.51\|3604930\|34\|CP011304\|CRISPRCasFinder,CRT	3604930-3604963	34	NZ_CP040851	Enterococcus faecium strain F17E0263 plasmid p_unnamned2, complete sequence	17719-17752	8	0.765
CP011304_22	22.58\|3605432\|34\|CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605432-3605465	34	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	463088-463121	8	0.765
CP011304_22	22.58\|3605432\|34\|CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605432-3605465	34	NZ_CP021084	Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence	226357-226390	8	0.765
CP011304_22	22.60\|3605575\|33\|CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605575-3605607	33	NZ_CP054618	Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence	163922-163954	8	0.758
CP011304_16	16.1\|2929139\|41\|CP011304\|CRISPRCasFinder	2929139-2929179	41	NZ_CP043057	Dolichospermum sp. UHCC 0315A plasmid pUHCC0315a, complete sequence	11928-11968	9	0.78
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP007616	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence	70039-70072	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	276184-276217	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP045607	Bacillus cereus strain SB1 plasmid p1, complete sequence	579232-579265	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	167659-167692	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP004877	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence	295955-295988	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP004877	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence	297112-297145	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NC_020394	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-233, complete sequence	93242-93275	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP014283	Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence	242169-242202	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	366658-366691	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	375882-375915	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP032614	Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence	415758-415791	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP004860	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence	308382-308415	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP053952	Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence	210421-210454	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	270698-270731	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	330704-330737	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP010090	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence	299056-299089	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	546188-546221	9	0.735
CP011304_22	22.9\|3601917\|34\|CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP053949	Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence	340571-340604	9	0.735
CP011304_22	22.35\|3603781\|34\|CP011304\|CRISPRCasFinder,CRT	3603781-3603814	34	JX173487	Pseudomonas phage Phi-S1, complete genome	19330-19363	9	0.735
CP011304_22	22.35\|3603781\|34\|CP011304\|CRISPRCasFinder,CRT	3603781-3603814	34	MT094431	Pseudomonas phage BIM BV-46, complete genome	18730-18763	9	0.735
CP011304_22	22.35\|3603781\|34\|CP011304\|CRISPRCasFinder,CRT	3603781-3603814	34	KP025626	Pseudomonas phage Pf-10, complete genome	19066-19099	9	0.735
CP011304_22	22.35\|3603781\|34\|CP011304\|CRISPRCasFinder,CRT	3603781-3603814	34	NC_015264	Pseudomonas phage phiIBB-PF7A, complete genome	18428-18461	9	0.735
CP011304_22	22.50\|3604859\|34\|CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	NZ_CP007648	Lactobacillus salivarius strain JCM1046 plasmid pMP1046B, complete sequence	57503-57536	9	0.735
CP011304_22	22.50\|3604859\|34\|CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	NC_011258	Borrelia recurrentis A1 plasmid pl37, complete sequence	13925-13958	9	0.735
CP011304_22	22.50\|3604859\|34\|CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	NC_011260	Borrelia recurrentis A1 plasmid pl53, complete sequence	29542-29575	9	0.735
CP011304_22	22.50\|3604859\|34\|CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	NC_018686	Bacillus thuringiensis MC28 plasmid pMC183, complete sequence	177173-177206	9	0.735
CP011304_22	22.53\|3605072\|37\|CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605072-3605108	37	MN694138	Marine virus AFVG_250M1080, complete genome	31429-31465	9	0.757
CP011304_22	22.53\|3605072\|37\|CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605072-3605108	37	MN693684	Marine virus AFVG_250M122, complete genome	11469-11505	9	0.757
CP011304_22	22.57\|3605360\|35\|CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605360-3605394	35	NZ_LN554848	Aliivibrio wodanis genome assembly AWOD1, plasmid : pAWOD920	24799-24833	9	0.743
CP011304_22	22.58\|3605432\|34\|CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605432-3605465	34	KX815338	Streptomyces phage Joe, complete genome	33035-33068	9	0.735
CP011304_24	24.15\|3611719\|35\|CP011304\|PILER-CR,CRISPRCasFinder,CRT	3611719-3611753	35	NC_014842	Pantoea sp. At-9b plasmid pPAT9B05, complete sequence	90645-90679	9	0.743
CP011304_21	21.1\|3599716\|34\|CP011304\|CRISPRCasFinder	3599716-3599749	34	MN693599	Marine virus AFVG_25M122, complete genome	5114-5147	10	0.706
CP011304_21	21.1\|3599716\|34\|CP011304\|CRISPRCasFinder	3599716-3599749	34	MN693251	Marine virus AFVG_25M125, complete genome	29270-29303	10	0.706
CP011304_21	21.1\|3599716\|34\|CP011304\|CRISPRCasFinder	3599716-3599749	34	MN693438	Marine virus AFVG_25M124, complete genome	4483-4516	10	0.706
CP011304_22	22.34\|3603710\|34\|CP011304\|CRISPRCasFinder,CRT	3603710-3603743	34	KX190834	Bacillus phage BMBtpLA3, complete genome	20505-20538	10	0.706
CP011304_22	22.34\|3603710\|34\|CP011304\|CRISPRCasFinder,CRT	3603710-3603743	34	NC_011645	Bacillus phage TP21-L, complete genome	3442-3475	10	0.706
CP011304_22	22.34\|3603710\|34\|CP011304\|CRISPRCasFinder,CRT	3603710-3603743	34	KF296717	Bacillus phage proCM3, complete genome	21675-21708	10	0.706
CP011304_22	22.34\|3603710\|34\|CP011304\|CRISPRCasFinder,CRT	3603710-3603743	34	JX887877	Bacillus phage vB_BtS_BMBtp2, complete genome	27129-27162	10	0.706
CP011304_22	22.34\|3603710\|34\|CP011304\|CRISPRCasFinder,CRT	3603710-3603743	34	MT136606	Bacillus phage vB_BceS_KLEB30-3S, complete genome	3293-3326	10	0.706
CP011304_22	22.41\|3604212\|34\|CP011304\|CRISPRCasFinder,CRT	3604212-3604245	34	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	94658-94691	10	0.706
CP011304_22	22.50\|3604859\|34\|CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	MN693898	Marine virus AFVG_250M937, complete genome	4297-4330	10	0.706
CP011304_22	22.50\|3604859\|34\|CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	MN694171	Marine virus AFVG_250M572, complete genome	2861-2894	10	0.706
CP011304_22	22.50\|3604859\|34\|CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	MN693979	Marine virus AFVG_250M571, complete genome	50870-50903	10	0.706
CP011304_22	22.58\|3605432\|34\|CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605432-3605465	34	MH271308	Microbacterium phage Percival, complete genome	38089-38122	11	0.676
CP011304_22	22.64\|3605859\|36\|CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605859-3605894	36	NZ_CP025929	Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence	7229-7264	11	0.694
CP011304_24	24.2\|3610785\|34\|CP011304\|PILER-CR,CRISPRCasFinder,CRT	3610785-3610818	34	NZ_CP039925	Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129b, complete sequence	91042-91075	11	0.676
CP011304_22	22.56\|3605288\|35\|CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605288-3605322	35	LC547238	Entercoccus phage phiM1EF2 DNA, nearly complete genome	55814-55848	12	0.657

1. spacer 20.1|3542043|41|CP011304|CRISPRCasFinder matches to NZ_CP025929 (Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence) position: , mismatch: 0, identity: 1.0

cagaatcgagaaacacagcgagaaaacaagcgagagtgttg	CRISPR spacer
cagaatcgagaaacacagcgagaaaacaagcgagagtgttg	Protospacer
*****************************************

2. spacer 22.3|3601486|36|CP011304|CRISPRCasFinder,CRT matches to NC_001597 (Microcystis aeruginosa plasmid pMA2 DNA, complete sequence) position: , mismatch: 1, identity: 0.972

acggttcaaccgacctaaaacaactattagcagggg	CRISPR spacer
acggttcaaccgacctgaaacaactattagcagggg	Protospacer
****************.*******************

3. spacer 22.27|3603206|35|CP011304|CRISPRCasFinder,CRT matches to NZ_CP026286 (Microcystis aeruginosa NIES-2549 plasmid p1, complete sequence) position: , mismatch: 1, identity: 0.971

atctaactgtgacactttgagaattggcactcgat	CRISPR spacer
atctaactgtgacactttgagaattggcacttgat	Protospacer
*******************************.***

4. spacer 22.47|3604646|34|CP011304|CRISPRCasFinder,CRT matches to NC_001597 (Microcystis aeruginosa plasmid pMA2 DNA, complete sequence) position: , mismatch: 1, identity: 0.971

ggttcaaccgacctaaaacaactattagcagggg	CRISPR spacer
ggttcaaccgacctgaaacaactattagcagggg	Protospacer
**************.*******************

5. spacer 24.10|3611357|34|CP011304|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 1, identity: 0.971

aagctttctttcagtacccggctcacaagcctga	CRISPR spacer
aagctttcttccagtacccggctcacaagcctga	Protospacer
**********.***********************

6. spacer 24.23|3612296|35|CP011304|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 1, identity: 0.971

agtcttctggcaattaggccgcgccctaaaattgt	CRISPR spacer
agtcttctggcaactaggccgcgccctaaaattgt	Protospacer
*************.*********************

7. spacer 13.2|2096461|22|CP011304|CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 2, identity: 0.909

gctcagtattggcagtgttggc	CRISPR spacer
acttagtattggcagtgttggc	Protospacer
.**.******************

8. spacer 24.8|3611215|34|CP011304|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 2, identity: 0.941

gaaaccgaagattaattttatcagactcaaacct	CRISPR spacer
gaaaccgaagattaatcttatcagactcaaatct	Protospacer
****************.**************.**

9. spacer 22.4|3601559|34|CP011304|CRISPRCasFinder,CRT matches to NC_001597 (Microcystis aeruginosa plasmid pMA2 DNA, complete sequence) position: , mismatch: 3, identity: 0.912

gtttttcggctatttttagcccaattctgtagga	CRISPR spacer
attttttggctatttttagcccaattctgtacga	Protospacer
.*****.************************ **

10. spacer 22.5|3601630|35|CP011304|CRISPRCasFinder,CRT matches to LC425518 (Uncultured phage DNA, contig: NODE577) position: , mismatch: 3, identity: 0.914

aagtggaattaatgcttaaaaatactgctgaattg	CRISPR spacer
aagtggagttaatgctcaaaaatactgctgaatta	Protospacer
*******.********.*****************.

11. spacer 22.32|3603567|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP026286 (Microcystis aeruginosa NIES-2549 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.912

aagaattttttcgagattgggagaaataggaagt	CRISPR spacer
gagaattttttcgagattgggagaaataggtagc	Protospacer
.***************************** **.

12. spacer 22.60|3605575|33|CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026286 (Microcystis aeruginosa NIES-2549 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.909

atggcgcggccgatgatgctttttccttcccct	CRISPR spacer
atggcacggccgataatgctttttccttccccc	Protospacer
*****.********.*****************.

13. spacer 2.1|455996|28|CP011304|CRISPRCasFinder matches to MG592600 (Vibrio phage 1.236.O._10N.261.52.C4, partial genome) position: , mismatch: 6, identity: 0.786

gattcatgaatcaaccctacaaagtatt	CRISPR spacer
agtacatgaaccaaccctaccaagtatc	Protospacer
..* ******.********* ******.

14. spacer 22.50|3604859|34|CP011304|CRISPRCasFinder,CRT matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 6, identity: 0.824

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
ggtgtaggatttgacagaaataagagaagatttg	Protospacer
*. . **.****** *******************

15. spacer 22.58|3605432|34|CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 6, identity: 0.824

ccccccttccccctccggcccgacc--ggcgatcga	CRISPR spacer
ccccccttccccctcctggccgacccggacgacc--	Protospacer
**************** * ******  *.***.*

16. spacer 22.58|3605432|34|CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR027520 (Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence) position: , mismatch: 6, identity: 0.824

ccccccttccccctccggcccgacc--ggcgatcga	CRISPR spacer
ccccccttccccctcctggccgacccggacgacc--	Protospacer
**************** * ******  *.***.*

17. spacer 22.58|3605432|34|CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NC_005838 (Thermus thermophilus HB27 plasmid pTT27, complete sequence) position: , mismatch: 6, identity: 0.824

ccccccttccccctccggcccgacc--ggcgatcga	CRISPR spacer
ccccccttccccctcctggccgacccggacgacc--	Protospacer
**************** * ******  *.***.*

18. spacer 28.1|4280151|26|CP011304|CRISPRCasFinder matches to NZ_CP049700 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence) position: , mismatch: 6, identity: 0.769

gcgacgctttcaagaaaccgagcgca	CRISPR spacer
cgagcgctttccagaaaccgagcgcg	Protospacer
  ..******* *************.

19. spacer 22.10|3601988|33|CP011304|CRISPRCasFinder,CRT matches to NC_002679 (Mesorhizobium japonicum MAFF 303099 plasmid pMLa, complete sequence) position: , mismatch: 7, identity: 0.788

ctgtatcgtgccgtcgatttcatccccatagat	CRISPR spacer
atgtaccgggccgtcgatttcatccgaagatat	Protospacer
 ****.** ****************  * * **

20. spacer 22.50|3604859|34|CP011304|CRISPRCasFinder,CRT matches to HQ633071 (Synechococcus phage S-SKS1 genomic sequence) position: , mismatch: 7, identity: 0.794

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
gaaagatctgttgagacaaataagaaaagatttg	Protospacer
****.*    ****** ********.********

21. spacer 24.9|3611286|34|CP011304|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 7, identity: 0.794

tgccgaaaggcaaattcgcaacttttgcggattt	CRISPR spacer
ctttaaaagggaaattcgcaaattttgcggattt	Protospacer
. ...***** ********** ************

22. spacer 13.1|2096407|31|CP011304|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 8, identity: 0.742

tttaagtctcgctagtgccagcagcatttta	CRISPR spacer
aataagtctcgctagtgtcagcggcgatcca	Protospacer
  ***************.****.**. *..*

23. spacer 13.1|2096407|31|CP011304|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 8, identity: 0.742

tttaagtctcgctagtgccagcagcatttta	CRISPR spacer
aataagtctcgctagtgtcagcggcgatcca	Protospacer
  ***************.****.**. *..*

24. spacer 22.20|3602708|34|CP011304|CRISPRCasFinder,CRT matches to NC_014824 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence) position: , mismatch: 8, identity: 0.765

gtttgatactgcaattataccta-tttgtgattat	CRISPR spacer
tgttgatactgcaaagatacctattttatgttca-	Protospacer
  ************  ******* ***.** *.*

25. spacer 22.35|3603781|34|CP011304|CRISPRCasFinder,CRT matches to MK016664 (Synechococcus phage S-B68, complete genome) position: , mismatch: 8, identity: 0.765

atcaatcaag---aaactcaagaaagcaatcaagaaa	CRISPR spacer
---tcttgagcgcaaactcaagaaagcaaacaagaaa	Protospacer
     *..**   **************** *******

26. spacer 22.41|3604212|34|CP011304|CRISPRCasFinder,CRT matches to NC_004959 (Lactococcus lactis W-37 plasmid pSRQ900, complete sequence) position: , mismatch: 8, identity: 0.765

agtacaaataaaagattatgtaacttttattagt	CRISPR spacer
aatacaaataaaaaattatggaactttcgaaaat	Protospacer
*.***********.****** ******..  *.*

27. spacer 22.41|3604212|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP034186 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

agtacaaataaaagattatgtaacttttattagt	CRISPR spacer
aaaatcgagaaaagattatgaaacatttattagt	Protospacer
*. *. .* *********** *** *********

28. spacer 22.41|3604212|34|CP011304|CRISPRCasFinder,CRT matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 8, identity: 0.765

agtacaaataaaagattatgtaacttttattagt	CRISPR spacer
attatgatgaaaaaattatggaacttttattaga	Protospacer
* **..*  ****.****** ************

29. spacer 22.51|3604930|34|CP011304|CRISPRCasFinder,CRT matches to CP003352 (Enterococcus faecium Aus0004 plasmid AUS0004_p1, complete sequence) position: , mismatch: 8, identity: 0.765

ctatcagaaaaactgttttatctgttgccactaa	CRISPR spacer
ctatcagaaatactgttttatttgcttcacttat	Protospacer
********** **********.**.* *  .**

30. spacer 22.51|3604930|34|CP011304|CRISPRCasFinder,CRT matches to NZ_LR135294 (Enterococcus faecium isolate E7237 plasmid 2) position: , mismatch: 8, identity: 0.765

ctatcagaaaaactgttttatctgttgccactaa	CRISPR spacer
ctatcagaaatactgttttatttgcttcacttat	Protospacer
********** **********.**.* *  .**

31. spacer 22.51|3604930|34|CP011304|CRISPRCasFinder,CRT matches to NC_021995 (Enterococcus faecium Aus0085 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.765

ctatcagaaaaactgttttatctgttgccactaa	CRISPR spacer
ctatcagaaatactgttttatttgcttcacttat	Protospacer
********** **********.**.* *  .**

32. spacer 22.51|3604930|34|CP011304|CRISPRCasFinder,CRT matches to NZ_LR135193 (Enterococcus faecium isolate E4438 plasmid 3) position: , mismatch: 8, identity: 0.765

ctatcagaaaaactgttttatctgttgccactaa	CRISPR spacer
ctatcagaaatactgttttatttgcttcacttat	Protospacer
********** **********.**.* *  .**

33. spacer 22.51|3604930|34|CP011304|CRISPRCasFinder,CRT matches to NZ_LT598666 (Enterococcus faecium isolate Ef_aus00233 plasmid 4) position: , mismatch: 8, identity: 0.765

ctatcagaaaaactgttttatctgttgccactaa	CRISPR spacer
ctatcagaaatactgttttatttgcttcacttat	Protospacer
********** **********.**.* *  .**

34. spacer 22.51|3604930|34|CP011304|CRISPRCasFinder,CRT matches to NZ_LR135204 (Enterococcus faecium isolate E7171 plasmid 2) position: , mismatch: 8, identity: 0.765

ctatcagaaaaactgttttatctgttgccactaa	CRISPR spacer
ctatcagaaatactgttttatttgcttcacttat	Protospacer
********** **********.**.* *  .**

35. spacer 22.51|3604930|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP040851 (Enterococcus faecium strain F17E0263 plasmid p_unnamned2, complete sequence) position: , mismatch: 8, identity: 0.765

ctatcagaaaaactgttttatctgttgccactaa	CRISPR spacer
ctatcagaaatactgttttatttgcttcacttat	Protospacer
********** **********.**.* *  .**

36. spacer 22.58|3605432|34|CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 8, identity: 0.765

ccccccttccccctccggcccgaccggcgatcga	CRISPR spacer
gcggccggcctcctccggcccgagcggcgatcgg	Protospacer
 *  **  **.************ *********.

37. spacer 22.58|3605432|34|CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021084 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence) position: , mismatch: 8, identity: 0.765

ccccccttccccctccggcccgaccggcgatcga	CRISPR spacer
ccgctcgcccccttccggccggaccggcgatccc	Protospacer
** *.* .****.******* ***********

38. spacer 22.60|3605575|33|CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.758

atggcgcggccgatgatgctttttccttcccct	CRISPR spacer
agggcgcggccgatggtgctctttccgctgccg	Protospacer
* *************.****.***** .. **

39. spacer 16.1|2929139|41|CP011304|CRISPRCasFinder matches to NZ_CP043057 (Dolichospermum sp. UHCC 0315A plasmid pUHCC0315a, complete sequence) position: , mismatch: 9, identity: 0.78

acagcgggcgttgggtttccttgcgtcaacccaacctacct	CRISPR spacer
tatgatcatgttgggtttccttgcgtcaacccaacctactt	Protospacer
   *   ..******************************.*

40. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP007616 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

41. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

42. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP045607 (Bacillus cereus strain SB1 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

43. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

44. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP004877 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

45. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP004877 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

46. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NC_020394 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-233, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

47. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

48. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

49. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

50. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP032614 (Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

51. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP004860 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

52. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP053952 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

53. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

54. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

55. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP010090 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

56. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

57. spacer 22.9|3601917|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP053949 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

58. spacer 22.35|3603781|34|CP011304|CRISPRCasFinder,CRT matches to JX173487 (Pseudomonas phage Phi-S1, complete genome) position: , mismatch: 9, identity: 0.735

atcaatcaagaaactcaagaaagcaatcaagaaa	CRISPR spacer
ctttggtaagaaactcaagaaggcattcaagaag	Protospacer
 *. . .**************.*** *******.

59. spacer 22.35|3603781|34|CP011304|CRISPRCasFinder,CRT matches to MT094431 (Pseudomonas phage BIM BV-46, complete genome) position: , mismatch: 9, identity: 0.735

atcaatcaagaaactcaagaaagcaatcaagaaa	CRISPR spacer
ctttggtaagaaactcaagaaggcattcaagaag	Protospacer
 *. . .**************.*** *******.

60. spacer 22.35|3603781|34|CP011304|CRISPRCasFinder,CRT matches to KP025626 (Pseudomonas phage Pf-10, complete genome) position: , mismatch: 9, identity: 0.735

atcaatcaagaaactcaagaaagcaatcaagaaa	CRISPR spacer
ctttggtaagaaactcaagaaggcattcaagaag	Protospacer
 *. . .**************.*** *******.

61. spacer 22.35|3603781|34|CP011304|CRISPRCasFinder,CRT matches to NC_015264 (Pseudomonas phage phiIBB-PF7A, complete genome) position: , mismatch: 9, identity: 0.735

atcaatcaagaaactcaagaaagcaatcaagaaa	CRISPR spacer
ctttggtaagaaactcaagaaggcattcaagaag	Protospacer
 *. . .**************.*** *******.

62. spacer 22.50|3604859|34|CP011304|CRISPRCasFinder,CRT matches to NZ_CP007648 (Lactobacillus salivarius strain JCM1046 plasmid pMP1046B, complete sequence) position: , mismatch: 9, identity: 0.735

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
actaaagaaaatgagagaaataagagaagaccaa	Protospacer
.  ******  *******************.. .

63. spacer 22.50|3604859|34|CP011304|CRISPRCasFinder,CRT matches to NC_011258 (Borrelia recurrentis A1 plasmid pl37, complete sequence) position: , mismatch: 9, identity: 0.735

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
tgaaggaagttagagagaaattagagaagatttt	Protospacer
 .**...*.** ********* ***********

64. spacer 22.50|3604859|34|CP011304|CRISPRCasFinder,CRT matches to NC_011260 (Borrelia recurrentis A1 plasmid pl53, complete sequence) position: , mismatch: 9, identity: 0.735

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
tgaaggaagttagagagaaattagagaagatttt	Protospacer
 .**...*.** ********* ***********

65. spacer 22.50|3604859|34|CP011304|CRISPRCasFinder,CRT matches to NC_018686 (Bacillus thuringiensis MC28 plasmid pMC183, complete sequence) position: , mismatch: 9, identity: 0.735

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
aaaaaagaatttgagaataataagaagactttaa	Protospacer
.***************. *******..*  ** .

66. spacer 22.53|3605072|37|CP011304|CRISPRCasFinder,CRT,PILER-CR matches to MN694138 (Marine virus AFVG_250M1080, complete genome) position: , mismatch: 9, identity: 0.757

attaatactatcttctctatttctttttgaattttgt	CRISPR spacer
ttgaatactatcttctgtaattctttttgattctcag	Protospacer
 * ************* ** ********** *.*..

67. spacer 22.53|3605072|37|CP011304|CRISPRCasFinder,CRT,PILER-CR matches to MN693684 (Marine virus AFVG_250M122, complete genome) position: , mismatch: 9, identity: 0.757

attaatactatcttctctatttctttttgaattttgt	CRISPR spacer
ttgaatactatcttctgtaattctttttgattctcag	Protospacer
 * ************* ** ********** *.*..

68. spacer 22.57|3605360|35|CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN554848 (Aliivibrio wodanis genome assembly AWOD1, plasmid : pAWOD920) position: , mismatch: 9, identity: 0.743

cctcgctggtttcctttagttttttgatgttttcc	CRISPR spacer
tcatgatggtttcctttagtttattggtgtttggg	Protospacer
.* .* **************** ***.*****

69. spacer 22.58|3605432|34|CP011304|CRISPRCasFinder,CRT,PILER-CR matches to KX815338 (Streptomyces phage Joe, complete genome) position: , mismatch: 9, identity: 0.735

ccccccttccccctccggcccgaccggcgatcga	CRISPR spacer
cagcactacccccttcggcccgaccggcgagacg	Protospacer
*  * ** ******.***************   .

70. spacer 24.15|3611719|35|CP011304|PILER-CR,CRISPRCasFinder,CRT matches to NC_014842 (Pantoea sp. At-9b plasmid pPAT9B05, complete sequence) position: , mismatch: 9, identity: 0.743

gacttaaggccgtcatggcagaccgggatgtaaat	CRISPR spacer
acccgaaggccgtcacggcagaccggcatgtggac	Protospacer
. *. **********.********** ****..*.

71. spacer 21.1|3599716|34|CP011304|CRISPRCasFinder matches to MN693599 (Marine virus AFVG_25M122, complete genome) position: , mismatch: 10, identity: 0.706

tgaatattggattgttgaggggtaattatggctg	CRISPR spacer
gaaactttggattgatgaggggttattatgtggc	Protospacer
 .**. ******** ******** ******

72. spacer 21.1|3599716|34|CP011304|CRISPRCasFinder matches to MN693251 (Marine virus AFVG_25M125, complete genome) position: , mismatch: 10, identity: 0.706

tgaatattggattgttgaggggtaattatggctg	CRISPR spacer
gaaactttggattgatgaggggttattatgtggc	Protospacer
 .**. ******** ******** ******

73. spacer 21.1|3599716|34|CP011304|CRISPRCasFinder matches to MN693438 (Marine virus AFVG_25M124, complete genome) position: , mismatch: 10, identity: 0.706

tgaatattggattgttgaggggtaattatggctg	CRISPR spacer
gaaactttggattgatgaggggttattatgtggc	Protospacer
 .**. ******** ******** ******

74. spacer 22.34|3603710|34|CP011304|CRISPRCasFinder,CRT matches to KX190834 (Bacillus phage BMBtpLA3, complete genome) position: , mismatch: 10, identity: 0.706

tcaggatcaaaagaattgggattaagatgtaaaa	CRISPR spacer
ccaggatcaaaagagtttggattaaaagacgtta	Protospacer
.*************.** *******.* ...  *

75. spacer 22.34|3603710|34|CP011304|CRISPRCasFinder,CRT matches to NC_011645 (Bacillus phage TP21-L, complete genome) position: , mismatch: 10, identity: 0.706

tcaggatcaaaagaattgggattaagatgtaaaa	CRISPR spacer
ccaggatcaaaagagtttggattaaaagacgtta	Protospacer
.*************.** *******.* ...  *

76. spacer 22.34|3603710|34|CP011304|CRISPRCasFinder,CRT matches to KF296717 (Bacillus phage proCM3, complete genome) position: , mismatch: 10, identity: 0.706

tcaggatcaaaagaattgggattaagatgtaaaa	CRISPR spacer
ccaggatcaaaagagtttggattaaaagacgtca	Protospacer
.*************.** *******.* ...  *

77. spacer 22.34|3603710|34|CP011304|CRISPRCasFinder,CRT matches to JX887877 (Bacillus phage vB_BtS_BMBtp2, complete genome) position: , mismatch: 10, identity: 0.706

tcaggatcaaaagaattgggattaagatgtaaaa	CRISPR spacer
ccaggatcaaaagagtttggattaaaagacgtca	Protospacer
.*************.** *******.* ...  *

78. spacer 22.34|3603710|34|CP011304|CRISPRCasFinder,CRT matches to MT136606 (Bacillus phage vB_BceS_KLEB30-3S, complete genome) position: , mismatch: 10, identity: 0.706

tcaggatcaaaagaattgggattaagatgtaaaa	CRISPR spacer
ccaggatcaaaagagtttggattaaaagacgtta	Protospacer
.*************.** *******.* ...  *

79. spacer 22.41|3604212|34|CP011304|CRISPRCasFinder,CRT matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 10, identity: 0.706

agtacaaataaaagattatgtaacttttattagt	CRISPR spacer
gtcttatataaaaggttatttaacttttattttt	Protospacer
. . .* *******.**** ***********  *

80. spacer 22.50|3604859|34|CP011304|CRISPRCasFinder,CRT matches to MN693898 (Marine virus AFVG_250M937, complete genome) position: , mismatch: 10, identity: 0.706

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
aaaaaagaattagagagaaagaagaagttctata	Protospacer
.********** ******** ****..   * *.

81. spacer 22.50|3604859|34|CP011304|CRISPRCasFinder,CRT matches to MN694171 (Marine virus AFVG_250M572, complete genome) position: , mismatch: 10, identity: 0.706

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
aaaaaagaattagagagaaagaagaagttctata	Protospacer
.********** ******** ****..   * *.

82. spacer 22.50|3604859|34|CP011304|CRISPRCasFinder,CRT matches to MN693979 (Marine virus AFVG_250M571, complete genome) position: , mismatch: 10, identity: 0.706

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
aaaaaagaattagagagaaagaagaagttctata	Protospacer
.********** ******** ****..   * *.

83. spacer 22.58|3605432|34|CP011304|CRISPRCasFinder,CRT,PILER-CR matches to MH271308 (Microbacterium phage Percival, complete genome) position: , mismatch: 11, identity: 0.676

ccccccttccccctccggcccgaccggcgatcga	CRISPR spacer
gtatctggacccctccagcccgaccggcgagcgt	Protospacer
 . .*.   *******.************* **

84. spacer 22.64|3605859|36|CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025929 (Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.694

tcgaaaaagaatttgagagaaataaaagaagatttg	CRISPR spacer
atggtcaaaaattcgagagaaataaaagaagaagaa	Protospacer
 .*.  **.****.******************   .

85. spacer 24.2|3610785|34|CP011304|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039925 (Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129b, complete sequence) position: , mismatch: 11, identity: 0.676

actcgctaaagtctttggggggagatgtagaaat	CRISPR spacer
ttggtctaaagtctttggggggcgaggtattcag	Protospacer
 .   ***************** ** ***   *

86. spacer 22.56|3605288|35|CP011304|CRISPRCasFinder,CRT,PILER-CR matches to LC547238 (Entercoccus phage phiM1EF2 DNA, nearly complete genome) position: , mismatch: 12, identity: 0.657

tttattagattttttttgtgctatcatagtagaat	CRISPR spacer
acaggcgtcttttttttgtgctataatagaagaaa	Protospacer
 . . ..  *************** **** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3582549 : 3641302

Bodo_saltans_virus(20.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKE65971.1\|3582549_3583134_-\|transposase	transposase	NA	NA	NA	NA
AKE65972.1\|3583153_3583309_-\|transposase	transposase	NA	NA	NA	NA
AKE65973.1\|3583357_3583516_-\|transposase	transposase	NA	NA	NA	NA
AKE65974.1\|3583822_3585217_-	hypothetical protein	NA	NA	NA	NA
AKE65975.1\|3585656_3587360_-	Sulfate permease	NA	NA	NA	NA
AKE65976.1\|3587659_3589624_-	Lycopene cyclase, CruA type	NA	NA	NA	NA
AKE65977.1\|3589769_3590012_+	hypothetical protein	NA	NA	NA	NA
AKE65978.1\|3590019_3590835_+	hypothetical protein	NA	NA	NA	NA
AKE65979.1\|3591107_3591788_+	hypothetical protein	NA	NA	NA	NA
AKE65980.1\|3591832_3592894_-	Putative transport system permease protein	NA	NA	NA	NA
AKE65981.1\|3592922_3593405_+	Cytochrome c, class I	NA	NA	NA	NA
AKE65982.1\|3593744_3595898_+	hypothetical protein	NA	NA	NA	NA
AKE65983.1\|3595915_3598081_+	hypothetical protein	NA	NA	NA	NA
AKE65984.1\|3598093_3598627_+	hypothetical protein	NA	NA	NA	NA
AKE65985.1\|3598665_3599109_+	Mobile element protein	NA	NA	NA	NA
AKE65986.1\|3599063_3599558_+	Mobile element protein	A0A2H4UV16	Bodo_saltans_virus	1.4e-13	34.9
AKE65987.1\|3599881_3601108_-	Transposase	A9YX10	Burkholderia_phage	1.6e-26	26.8
AKE65988.1\|3603598_3603757_+	hypothetical protein	NA	NA	NA	NA
AKE65989.1\|3607003_3608152_-	Mobile element protein	NA	NA	NA	NA
AKE65990.1\|3609111_3610608_+\|transposase	transposase	NA	NA	NA	NA
AKE65991.1\|3611751_3611886_+	hypothetical protein	NA	NA	NA	NA
AKE65992.1\|3612814_3613087_-	CRISPR-associated protein Cas2	NA	NA	NA	NA
AKE65993.1\|3613099_3614104_-	CRISPR-associated protein Cas1	NA	NA	NA	NA
AKE65994.1\|3614109_3614703_-	CRISPR-associated RecB family exonuclease Cas4	NA	NA	NA	NA
AKE65995.1\|3614705_3615539_-	CRISPR repeat RNA endoribonuclease Cas6	NA	NA	NA	NA
AKE65996.1\|3615538_3616105_-	Protein of unknown function DUF820	NA	NA	NA	NA
AKE65997.1\|3616145_3618881_-	CRISPR-associated helicase Cas3	NA	NA	NA	NA
AKE65998.1\|3618873_3619563_-	hypothetical protein	NA	NA	NA	NA
AKE65999.1\|3619701_3620595_-	hypothetical protein	NA	NA	NA	NA
AKE66000.1\|3620597_3623129_-	hypothetical protein	NA	NA	NA	NA
AKE66001.1\|3623216_3623360_-	hypothetical protein	NA	NA	NA	NA
AKE66002.1\|3623893_3624751_+	hypothetical protein	NA	NA	NA	NA
AKE66003.1\|3624859_3625222_+	Mobile element protein	NA	NA	NA	NA
AKE66004.1\|3625241_3625826_+\|transposase	transposase	NA	NA	NA	NA
AKE66005.1\|3625917_3626340_+	Pterin-binding family	NA	NA	NA	NA
AKE66006.1\|3626625_3627489_-	High-affinity branched-chain amino acid transport system permease protein LivH	NA	NA	NA	NA
AKE66007.1\|3627759_3628269_+	pentapeptide repeat protein	NA	NA	NA	NA
AKE66008.1\|3628268_3629393_+	Phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA
AKE66009.1\|3629528_3630467_-	hypothetical protein	NA	NA	NA	NA
AKE66010.1\|3630608_3630926_-	Mobile element protein	Q9G0F2	Phage_Gifsy-1	3.2e-35	64.3
AKE66011.1\|3631073_3631721_-	Mobile element protein	A0A0R8V9X2	Thermobifida_phage	2.0e-60	53.7
AKE66012.1\|3631831_3631966_+	hypothetical protein	NA	NA	NA	NA
AKE66013.1\|3632060_3632180_-	hypothetical protein	NA	NA	NA	NA
AKE66014.1\|3632381_3634340_+	sensory transduction histidine kinase	A0A1V0SGX0	Hokovirus	8.6e-22	31.2
AKE66015.1\|3634610_3635816_+	Argininosuccinate synthase	NA	NA	NA	NA
AKE66016.1\|3636414_3636756_+	XisI protein-like	NA	NA	NA	NA
AKE66017.1\|3636905_3637292_+	hypothetical protein	NA	NA	NA	NA
AKE66018.1\|3637557_3637713_-	hypothetical protein	NA	NA	NA	NA
AKE66019.1\|3637764_3638460_+	hypothetical protein	NA	NA	NA	NA
AKE66020.1\|3638571_3638772_+	hypothetical protein	NA	NA	NA	NA
AKE66021.1\|3639248_3640058_+	GMP synthase [glutamine-hydrolyzing]	NA	NA	NA	NA
AKE66022.1\|3640163_3640781_-	Mobile element protein	NA	NA	NA	NA
AKE66023.1\|3640852_3641302_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026286

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP011304

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection