CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP011398	Listeria monocytogenes strain CFSAN008100 chromosome, complete genome	0 crisprs	DinG,cas3,WYL,casR,RT,DEDDh,csa3	0	0	7	0
CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	0 crisprs	csa3,cas5	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

125863 : 132390

Listeria_phage(33.33%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKG87118.1\|125863_126316_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
AKG87119.1\|126321_126657_-	XRE family transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
AKG87120.1\|126873_127302_+	hypothetical protein	NA	NA	NA	NA
AKG87121.1\|127313_127730_+	hypothetical protein	A8ASQ1	Listeria_phage	6.5e-20	37.9
AKG87122.1\|128009_128399_+	DUF5072 domain-containing protein	NA	NA	NA	NA
AKG87123.1\|128411_128924_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
AKG87124.1\|128971_129274_+	segregation and condensation protein B	NA	NA	NA	NA
AKG89883.2\|129315_129720_+	phenylalanine racemase	NA	NA	NA	NA
AKG87125.1\|129706_131575_+	hypothetical protein	A0A097PAU2	Streptococcus_pyogenes_phage	4.5e-20	45.8
AKG87126.1\|131571_132390_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	7.2e-39	35.0

DBSCAN-SWA_2

1128647 : 1136070

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKG88046.1\|1128647_1129031_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
AKG88047.1\|1129052_1130036_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	2.0e-11	33.8
AKG88048.1\|1130050_1131064_+	glycosyl transferase	A0A1V0SAH6	Catovirus	1.8e-10	31.2
AKG88049.1\|1131272_1132763_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
AKG88050.1\|1132774_1133599_+	NAD(+) synthetase	G3MA24	Bacillus_virus	1.3e-67	52.2
AKG88051.1\|1133611_1133920_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AKG88052.1\|1133980_1134385_+	PTS lactose transporter subunit IIBC	NA	NA	NA	NA
AKG88053.2\|1134513_1136070_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	6.0e-18	29.2

DBSCAN-SWA_3

1231891 : 1298275

Listeria_phage(83.33%)

tail,portal,holin,head,capsid,terminase,integrase,tRNA

attL 1257640:1257663|attR 1299793:1299816

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKG88162.1\|1231891_1232944_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.3e-29	34.9
AKG88163.1\|1232943_1235352_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
AKG88164.1\|1235512_1236214_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-33	35.8
AKG88165.1\|1236227_1239638_+	ABC transporter permease	NA	NA	NA	NA
AKG88166.1\|1239735_1240188_+	MarR family transcriptional regulator	NA	NA	NA	NA
AKG88167.1\|1240203_1243404_+	hypothetical protein	NA	NA	NA	NA
AKG88168.1\|1243507_1244182_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	3.4e-50	47.7
AKG88169.2\|1244219_1245146_-	ribonuclease HIII	NA	NA	NA	NA
AKG88170.2\|1245299_1245563_+	cell division protein ZapA	NA	NA	NA	NA
AKG88171.1\|1245562_1246105_+	colicin V synthesis protein	NA	NA	NA	NA
AKG88172.1\|1246196_1247909_+	DNA polymerase/3'-5' exonuclease PolX	A0A2H4UV14	Bodo_saltans_virus	1.9e-17	24.5
AKG88173.1\|1247931_1250289_+	endonuclease MutS2	Q94M10	Lactobacillus_phage	1.0e-21	50.4
AKG88174.1\|1250369_1250681_+	thiol reductase thioredoxin	A0A1X9I9P5	Staphylococcus_phage	5.4e-19	39.6
AKG88175.1\|1250756_1252568_+	UvrABC system protein C	NA	NA	NA	NA
AKG88176.1\|1252748_1253963_+	aspartate kinase	NA	NA	NA	NA
AKG88177.2\|1254018_1254513_-	DUF2507 domain-containing protein	NA	NA	NA	NA
AKG88178.1\|1254660_1255461_+	glutamate racemase	NA	NA	NA	NA
AKG88179.1\|1255473_1256220_+	ribonuclease PH	NA	NA	NA	NA
AKG88180.1\|1256222_1256834_+	XTP/dITP diphosphatase	Q66YC8	Euphorbia_ringspot_virus	8.7e-05	28.0
AKG88181.1\|1256870_1257395_+	metallophosphoesterase	NA	NA	NA	NA
1257640:1257663	attL	NA	NA	NA	NA
AKG88182.1\|1257680_1258835_-\|integrase	site-specific integrase	A0A059T688	Listeria_phage	2.8e-214	97.7
AKG88183.1\|1258980_1259637_-	DUF4352 domain-containing protein	NA	NA	NA	NA
AKG89913.2\|1259688_1260141_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	1.7e-82	96.7
AKG88184.1\|1260157_1260481_-	XRE family transcriptional regulator	Q8W5Y0	Listeria_phage	1.2e-37	72.0
AKG88185.1\|1260941_1261259_-	hypothetical protein	NA	NA	NA	NA
AKG88186.1\|1261324_1261528_+	XRE family transcriptional regulator	A0A059T5F8	Listeria_phage	3.1e-28	100.0
AKG88187.1\|1261529_1261772_+	hypothetical protein	A8ATD2	Listeria_phage	1.4e-43	100.0
AKG88188.1\|1261774_1261960_+	hypothetical protein	A0A059T7Z3	Listeria_phage	4.4e-29	98.4
AKG88189.1\|1262483_1263242_+	SAM-dependent DNA methyltransferase	A8ATD5	Listeria_phage	3.3e-131	98.3
AKG88191.1\|1263412_1264126_+	pentapeptide repeat-containing protein	A8ATE4	Listeria_phage	1.9e-35	89.0
AKG88193.1\|1264678_1265158_+	hypothetical protein	NA	NA	NA	NA
AKG88194.1\|1265158_1265788_+	hypothetical protein	A0A191KBJ8	Streptococcus_virus	1.1e-66	58.4
AKG88195.1\|1265806_1266040_+	hypothetical protein	NA	NA	NA	NA
AKG88196.1\|1266036_1266267_+	hypothetical protein	NA	NA	NA	NA
AKG88197.1\|1266256_1266523_+	hypothetical protein	NA	NA	NA	NA
AKG88198.1\|1267026_1267410_+	hypothetical protein	A8ATE8	Listeria_phage	5.3e-61	92.9
AKG88199.1\|1267411_1267891_+	hypothetical protein	R4IBM0	Listeria_phage	7.6e-57	76.7
AKG88200.1\|1267910_1268600_+	DNA-binding protein	R4IDY8	Listeria_phage	4.8e-129	98.3
AKG89914.2\|1268663_1269920_+	helicase	R4IBK4	Listeria_phage	9.5e-224	97.0
AKG88201.1\|1269942_1270425_+	DUF669 domain-containing protein	A8ATF2	Listeria_phage	4.9e-88	100.0
AKG88202.1\|1270447_1272721_+	DNA primase	A8ATF3	Listeria_phage	0.0e+00	94.7
AKG88203.1\|1273013_1273334_+	VRR-NUC domain-containing protein	W0G8N0	Listeria_phage	5.8e-53	95.3
AKG88204.1\|1273330_1273600_+	hypothetical protein	W0GBM0	Listeria_phage	5.3e-15	73.6
AKG89915.1\|1273710_1274244_+	DUF3310 domain-containing protein	A0A059T7T5	Listeria_phage	1.1e-80	82.5
AKG88205.1\|1274240_1274510_+	hypothetical protein	NA	NA	NA	NA
AKG88206.1\|1274754_1274982_+	hypothetical protein	NA	NA	NA	NA
AKG88207.1\|1274994_1275420_+	hypothetical protein	A0A059T6H4	Listeria_phage	8.0e-74	100.0
AKG88208.1\|1275517_1276261_+	DUF559 domain-containing protein	NA	NA	NA	NA
AKG88209.1\|1276621_1276936_+	HNH endonuclease	A8ATF8	Listeria_phage	3.8e-57	99.0
AKG88210.1\|1276984_1277341_+	hypothetical protein	A0A059T7Y1	Listeria_phage	4.5e-46	97.0
AWG43509.1\|1277337_1278981_+\|terminase	terminase	A0A059T7Q8	Listeria_phage	0.0e+00	98.2
AWG43510.1\|1278992_1280123_+\|portal	phage portal protein	A8AT96	Listeria_phage	1.7e-203	93.1
AKG88211.1\|1280119_1280917_+	peptidase	A0A059T5F2	Listeria_phage	1.1e-143	99.6
AKG88212.1\|1280943_1282095_+\|capsid	phage major capsid protein	A0A059T678	Listeria_phage	6.3e-214	100.0
AKG88213.1\|1282281_1282581_+	hypothetical protein	A0A059T7R0	Listeria_phage	5.3e-48	100.0
AKG88214.1\|1282564_1282930_+\|head,tail	phage head-tail adapter protein	A0A059T6F2	Listeria_phage	2.9e-64	100.0
AKG88215.1\|1282926_1283328_+	hypothetical protein	A0A059T5F3	Listeria_phage	2.1e-68	100.0
AKG88216.1\|1283324_1283708_+	DUF3168 domain-containing protein	A0A059T681	Listeria_phage	1.1e-66	98.4
AKG88217.1\|1283728_1284316_+\|tail	phage tail protein	A0A059T7Y4	Listeria_phage	2.9e-106	98.5
AKG88218.1\|1284386_1284719_+	hypothetical protein	A0A059T7R2	Listeria_phage	1.5e-51	96.4
AWG43511.1\|1284934_1289851_+\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	96.9
AKG88219.1\|1291510_1293805_+	hypothetical protein	A0A059T7Y6	Listeria_phage	0.0e+00	99.2
AKG88220.1\|1293794_1294886_+	carbohydrate-binding protein CenC	A0A059T7R4	Listeria_phage	1.7e-189	91.8
AKG88221.1\|1294936_1295242_+	hypothetical protein	A0A059T5E6	Listeria_phage	1.8e-43	100.0
AKG88222.1\|1295241_1295523_+\|holin	phage holin	A8ATW3	Listeria_phage	3.0e-45	100.0
AKG88223.1\|1295522_1296230_+	alkaline phosphatase	A8ATW4	Listeria_phage	1.0e-129	97.9
AKG88224.1\|1296377_1297079_+	DUF3800 domain-containing protein	R4IBV1	Listeria_phage	6.4e-129	97.8
AKG88225.1\|1297557_1297791_+	hypothetical protein	A8ATX0	Listeria_phage	2.3e-35	94.8
AKG88226.1\|1297787_1297979_+	hypothetical protein	A8ATC6	Listeria_phage	1.7e-28	98.4
AWG43512.1\|1298173_1298275_-\|integrase	integrase	A0A059T688	Listeria_phage	2.4e-05	66.7
1299793:1299816	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1320816 : 1372862

Listeria_phage(91.89%)

protease,tail,holin,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKG88250.1\|1320816_1322064_-	gamma-glutamyl-phosphate reductase	A0A1X9I5D4	Streptococcus_phage	7.2e-107	51.8
AKG88251.1\|1322047_1322878_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	3.6e-46	42.4
AKG88252.1\|1323024_1324164_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
AKG88253.1\|1324243_1324639_-	XRE family transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
AKG88254.1\|1324955_1326371_-	recombinase family protein	A0A1L2JY12	Aeribacillus_phage	3.0e-117	47.1
AKG88255.1\|1326460_1326853_-	hypothetical protein	A8ATJ7	Listeria_phage	2.6e-55	94.6
AKG88256.1\|1326899_1327319_-	ImmA/IrrE family metallo-endopeptidase	A8ATJ8	Listeria_phage	3.4e-77	98.6
AKG88257.1\|1327335_1327764_-	XRE family transcriptional regulator	A8ATJ9	Listeria_phage	2.0e-72	99.3
AKG88258.1\|1327922_1328108_+	XRE family transcriptional regulator	A8ATK0	Listeria_phage	5.8e-29	100.0
AKG88259.1\|1328184_1328709_+	hypothetical protein	A8ATK1	Listeria_phage	6.6e-86	90.8
AKG88260.1\|1329187_1329472_+	hypothetical protein	A8ATK4	Listeria_phage	9.2e-26	54.2
AKG88261.1\|1329649_1329877_+	hypothetical protein	A8ATK5	Listeria_phage	5.2e-32	98.7
AKG88262.1\|1329894_1330236_+	hypothetical protein	A8ATK6	Listeria_phage	6.7e-23	51.3
AKG88263.1\|1330222_1332166_+	hypothetical protein	A8ATK7	Listeria_phage	0.0e+00	98.3
AKG88264.1\|1332169_1332901_+	phage recombination protein Bet	A8ATK8	Listeria_phage	6.0e-77	61.4
AKG88265.1\|1332900_1333596_+	MBL fold metallo-hydrolase	A8ATK9	Listeria_phage	4.3e-125	97.4
AKG88266.1\|1333607_1334525_+	DnaD domain protein	A8ATL0	Listeria_phage	2.2e-169	100.0
AKG88267.1\|1334448_1335264_+	DnaC	A8ATL1	Listeria_phage	4.1e-143	99.3
AKG88268.1\|1335260_1335461_+	hypothetical protein	A8ATL2	Listeria_phage	4.0e-28	89.4
AKG89916.1\|1335447_1335669_+	hypothetical protein	A8ATL3	Listeria_phage	1.2e-28	85.3
AKG88269.1\|1335625_1335865_+	hypothetical protein	A8ATL4	Listeria_phage	3.6e-31	98.6
AKG88270.1\|1335845_1336283_+	RusA family crossover junction endodeoxyribonuclease	A8ATL5	Listeria_phage	8.5e-71	91.0
AKG88271.1\|1336302_1336923_+	hypothetical protein	A8ATL6	Listeria_phage	6.1e-107	98.1
AKG88272.1\|1336963_1337344_+	hypothetical protein	A8ATL7	Listeria_phage	1.6e-65	95.2
AKG88273.1\|1337496_1337919_+	hypothetical protein	A8ATL9	Listeria_phage	6.1e-50	88.6
AKG88274.1\|1337915_1339277_+	hypothetical protein	A8ATM0	Listeria_phage	2.4e-249	94.7
AKG88275.1\|1339293_1339671_+	hypothetical protein	NA	NA	NA	NA
AKG88276.1\|1339667_1339922_+	hypothetical protein	A0A059T6G3	Listeria_phage	7.4e-27	74.4
AKG88277.1\|1340062_1340446_+	preprotein translocase subunit YajC	A8ATZ3	Listeria_phage	2.4e-53	88.2
AKG88278.1\|1340464_1340653_+	hypothetical protein	NA	NA	NA	NA
AKG88279.1\|1340652_1340985_+	hypothetical protein	A8ATZ5	Listeria_phage	4.5e-08	93.1
AKG88280.1\|1340981_1341182_+	hypothetical protein	NA	NA	NA	NA
AKG88281.1\|1341174_1341429_+	DUF3850 domain-containing protein	A8ATM7	Listeria_phage	5.9e-32	82.5
AKG88282.1\|1341440_1342001_+	hypothetical protein	A8ATM8	Listeria_phage	4.5e-101	95.7
AKG89917.1\|1342081_1342504_+	hypothetical protein	A8ATM9	Listeria_phage	6.3e-71	100.0
AKG88283.1\|1342516_1343284_+	Rha family transcriptional regulator	A8ATN0	Listeria_phage	9.8e-139	98.4
AKG88284.1\|1343231_1343423_+	hypothetical protein	A8ATN1	Listeria_phage	2.7e-21	94.6
AKG88285.1\|1343597_1344074_+	hypothetical protein	A0A1P8BMT7	Lactococcus_phage	5.5e-07	30.2
AKG88286.1\|1344146_1345484_+	chromosome partitioning protein ParB	A8ATN5	Listeria_phage	7.2e-246	94.8
AKG88287.1\|1345531_1345729_+	hypothetical protein	A8ATN6	Listeria_phage	5.2e-28	100.0
AKG88288.1\|1345858_1346089_+	hypothetical protein	A8ATN7	Listeria_phage	3.7e-33	98.7
AKG88289.1\|1346126_1346414_+	hypothetical protein	A0A0S2MYE7	Enterococcus_phage	9.9e-20	55.4
AKG88290.1\|1346455_1347340_+	hypothetical protein	A8ATF9	Listeria_phage	2.2e-126	92.9
AKG88291.1\|1347317_1348778_+	hypothetical protein	A8ATG0	Listeria_phage	1.0e-277	95.1
AKG88292.1\|1348791_1350177_+	hypothetical protein	A8ATG1	Listeria_phage	9.7e-262	98.0
AKG88293.1\|1350169_1351579_+\|head	phage head morphogenesis protein	A8ATG2	Listeria_phage	5.6e-265	98.9
AKG88294.1\|1351794_1352904_+	DUF2213 domain-containing protein	A8ATG4	Listeria_phage	9.4e-175	99.5
AKG88295.1\|1352903_1353353_+	hypothetical protein	A8ATG5	Listeria_phage	1.0e-74	98.0
AKG88296.1\|1353373_1354279_+\|capsid	major capsid protein	A8ATG6	Listeria_phage	9.7e-162	97.0
AKG88297.1\|1354301_1354688_+	hypothetical protein	A8ATG7	Listeria_phage	2.1e-65	98.4
AKG88298.1\|1354699_1355035_+	DUF4054 domain-containing protein	A8ATG8	Listeria_phage	3.6e-53	99.1
AKG88299.1\|1355034_1355634_+	hypothetical protein	A8ATG9	Listeria_phage	3.7e-109	98.5
AKG88300.1\|1355633_1356008_+	hypothetical protein	A8ATH0	Listeria_phage	8.0e-62	95.2
AKG88301.1\|1355997_1356480_+	hypothetical protein	A8ATH1	Listeria_phage	1.1e-82	96.9
AKG88302.1\|1356484_1357480_+	DUF3383 domain-containing protein	A8ATH2	Listeria_phage	3.5e-181	99.4
AKG89918.2\|1357496_1357895_+	hypothetical protein	A8ATH3	Listeria_phage	4.0e-67	99.2
AKG89919.2\|1357947_1358304_+	hypothetical protein	A8ATH4	Listeria_phage	2.3e-58	97.5
AKG88303.1\|1358266_1358479_+	hypothetical protein	A8ATH5	Listeria_phage	1.9e-28	91.4
AKG88304.1\|1358480_1363511_+\|tail	phage tail tape measure protein	A8ATH6	Listeria_phage	0.0e+00	74.6
AKG88305.1\|1363516_1364065_+	hypothetical protein	A8ATH7	Listeria_phage	7.1e-83	84.5
AKG88306.1\|1364064_1364436_+	hypothetical protein	A8ATH8	Listeria_phage	5.4e-50	77.0
AKG89920.1\|1364441_1365248_+	hypothetical protein	A8ATH9	Listeria_phage	6.1e-131	86.9
AKG88307.1\|1365248_1365587_+	hypothetical protein	A8ATI0	Listeria_phage	9.2e-49	86.6
AKG88308.1\|1365583_1365946_+	DUF2634 domain-containing protein	A8ATI1	Listeria_phage	2.0e-41	70.0
AKG88309.1\|1365938_1367090_+	hypothetical protein	A8ATI2	Listeria_phage	2.4e-165	77.0
AKG88310.1\|1367079_1367721_+	hypothetical protein	A8ATI3	Listeria_phage	4.5e-113	99.1
AKG88311.1\|1367742_1368471_+	hypothetical protein	A8ATI4	Listeria_phage	2.7e-130	93.4
AKG88312.1\|1368476_1368818_+	hypothetical protein	A8ATI5	Listeria_phage	1.5e-43	93.5
AKG88313.1\|1369003_1369450_+	hypothetical protein	A8ATI7	Listeria_phage	9.3e-73	97.3
AKG88314.1\|1369425_1369872_+	hypothetical protein	A8ATI8	Listeria_phage	1.7e-63	95.9
AKG88315.1\|1369891_1370107_+	hypothetical protein	A8ATI9	Listeria_phage	1.8e-26	93.0
AKG88316.1\|1370117_1370372_+\|holin	phage holin	A8ATJ0	Listeria_phage	9.4e-38	95.2
AKG88317.1\|1370374_1371208_+	N-acetylmuramoyl-L-alanine amidase	A0A1S7FZ94	Listeria_phage	2.5e-47	43.8
AKG88318.1\|1371269_1371491_-	XRE family transcriptional regulator	A8ATJ2	Listeria_phage	9.3e-34	97.3
AKG88319.1\|1371518_1371722_-	hypothetical protein	A8ATJ3	Listeria_phage	2.6e-30	95.5
AKG89921.1\|1371735_1372101_-	hypothetical protein	A8ATJ4	Listeria_phage	6.4e-56	94.2
AWG43514.1\|1372410_1372644_+	hypothetical protein	A8ATC5	Listeria_phage	1.1e-32	87.0
AWG43515.1\|1372640_1372862_+	hypothetical protein	A8ATX1	Listeria_phage	1.4e-21	89.7

DBSCAN-SWA_5

1918975 : 1927261

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKG88806.1\|1918975_1919542_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.3e-26	36.4
AKG88807.1\|1919538_1920588_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.2e-63	44.4
AKG88808.1\|1920606_1922034_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
AKG88809.1\|1922018_1924238_-	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	1.7e-159	41.0
AKG88810.1\|1924230_1924914_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AKG88811.1\|1924917_1925163_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AKG88812.1\|1925174_1925888_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	2.0e-40	38.3
AKG88813.1\|1925968_1927261_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0

DBSCAN-SWA_6

2453975 : 2496845

Listeria_phage(95.16%)

tail,holin,portal,capsid,terminase,integrase,coat

attL 2451270:2451285|attR 2488954:2488969

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2451270:2451285	attL	NA	NA	NA	NA
AKG89300.1\|2453975_2454173_-	hypothetical protein	A8ATC6	Listeria_phage	1.7e-15	66.1
AKG89301.1\|2454169_2454403_-	hypothetical protein	A8ATC5	Listeria_phage	1.2e-34	92.2
AKG89302.1\|2455232_2456084_-	peptidase M15	A0A059T7Y8	Listeria_phage	1.4e-138	93.3
AKG89303.1\|2456083_2456365_-\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
AKG89304.1\|2456377_2456743_-	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
AKG89305.1\|2456770_2456929_-	hypothetical protein	Q9T1A1	Listeria_phage	6.0e-19	100.0
AKG89306.1\|2456933_2457251_-	hypothetical protein	Q9T1A2	Listeria_phage	1.3e-49	92.4
AKG89307.1\|2457262_2458336_-	DUF2479 domain-containing protein	Q9T1A3	Listeria_phage	9.1e-191	95.8
AKG89308.1\|2458335_2459364_-	hypothetical protein	Q9T1A4	Listeria_phage	3.3e-190	98.5
AKG89309.1\|2459364_2460390_-	hypothetical protein	Q9T1A5	Listeria_phage	1.5e-182	88.6
AKG89310.1\|2460398_2461217_-\|tail	phage tail family protein	Q9T1A6	Listeria_phage	3.8e-149	93.4
AKG89311.1\|2461218_2466582_-\|tail	tail tape measure protein	Q9T1A7	Listeria_phage	0.0e+00	97.3
AKG89312.1\|2466592_2467192_-	hypothetical protein	A0A0B5CTW0	Listeria_phage	1.9e-76	72.0
AKG89313.1\|2467197_2467620_-	hypothetical protein	Q9T1A9	Listeria_phage	5.9e-69	97.9
AKG89314.1\|2467672_2468005_-	Ig-like virion protein	Q9T1B0	Listeria_phage	1.5e-30	70.9
AKG89315.1\|2467934_2468372_-\|tail	phage tail protein	A0A0B5CYN3	Listeria_phage	4.2e-78	98.6
AKG89316.1\|2468374_2468782_-\|capsid	minor capsid protein	A0A0B5CU21	Listeria_phage	1.5e-66	98.5
AKG89317.1\|2468781_2469120_-\|capsid	minor capsid protein	A0A059T7W4	Listeria_phage	7.0e-57	97.3
AKG89318.1\|2469119_2469482_-\|capsid	minor capsid protein	A0A0B5D151	Listeria_phage	1.8e-58	91.7
AKG89319.1\|2469481_2469877_-	hypothetical protein	A0A059T5E3	Listeria_phage	4.8e-65	97.7
AKG89320.1\|2469895_2470897_-\|coat	coat protein	A0A059T6D4	Listeria_phage	8.2e-186	99.4
AKG89321.1\|2470896_2471487_-	scaffolding protein	Q9T1B8	Listeria_phage	7.7e-75	91.5
AKG89322.1\|2471565_2472705_-\|capsid	minor capsid protein	A0A0B5D147	Listeria_phage	4.9e-203	96.8
AKG89323.1\|2472710_2474201_-\|portal	portal protein	Q9T1C0	Listeria_phage	3.3e-284	99.6
AKG89324.1\|2474213_2475545_-\|terminase	PBSX family phage terminase large subunit	A8ASJ2	Listeria_phage	1.1e-259	98.6
AKG89325.1\|2475513_2476056_-\|terminase	terminase small subunit	A8ASJ1	Listeria_phage	5.4e-91	98.9
AKG89326.1\|2476113_2476377_-	hypothetical protein	A0A0S2MYE7	Enterococcus_phage	1.7e-34	78.2
AKG89327.1\|2476403_2476703_-	hypothetical protein	A0A2H4JBC0	uncultured_Caudovirales_phage	3.8e-14	40.7
AKG89328.1\|2477097_2477532_-	hypothetical protein	A8ASQ1	Listeria_phage	4.3e-75	99.3
AKG89329.1\|2477550_2477715_-	hypothetical protein	A8ASQ0	Listeria_phage	7.4e-20	94.4
AKG89330.1\|2477843_2478248_-	hypothetical protein	A8AU00	Listeria_phage	2.7e-71	98.5
AKG89331.1\|2478350_2478656_-	response regulator	A8ATZ8	Listeria_phage	1.9e-37	83.2
AKG89332.1\|2478687_2479167_-	single-stranded DNA-binding protein	A0A059T5E0	Listeria_phage	5.4e-79	94.4
AKG89333.1\|2479166_2479445_-	hypothetical protein	NA	NA	NA	NA
AKG89334.1\|2479441_2479843_-	hypothetical protein	A0A059T6C9	Listeria_phage	1.9e-53	76.7
AKG89335.1\|2479839_2480040_-	hypothetical protein	NA	NA	NA	NA
AKG89336.1\|2480040_2480244_-	hypothetical protein	NA	NA	NA	NA
AKG89337.1\|2480243_2480924_-	pentapeptide repeat-containing protein	A0A060AFJ6	Listeria_phage	1.2e-34	94.7
AKG89339.1\|2481094_2481616_-	hypothetical protein	A0A059T7V5	Listeria_phage	2.4e-32	47.8
AKG89340.1\|2481612_2482161_-	DUF1642 domain-containing protein	A0A059T7S4	Listeria_phage	3.7e-71	75.3
AKG89341.1\|2482157_2482838_-	hypothetical protein	A8ATD7	Listeria_phage	3.3e-122	97.8
AKG89342.1\|2482850_2483795_-\|integrase	site-specific integrase	A8ATD6	Listeria_phage	4.5e-178	98.4
AKG89343.1\|2483805_2484519_-	SAM-dependent DNA methyltransferase	A8ATD5	Listeria_phage	7.7e-130	97.9
AKG89344.1\|2484515_2485448_-	DnaD domain protein	A8ATY7	Listeria_phage	2.6e-149	89.3
AKG89345.1\|2485467_2486283_-	recombinase RecT	Q9T172	Listeria_phage	1.7e-144	94.8
AKG89346.1\|2486285_2487245_-	hypothetical protein	Q9T173	Listeria_phage	8.7e-153	83.1
AKG89347.1\|2487476_2487665_-	hypothetical protein	A8ATY3	Listeria_phage	1.3e-28	98.4
AKG89348.1\|2487772_2487988_-	hypothetical protein	Q9T176	Listeria_phage	1.8e-26	87.3
AKG89349.1\|2487980_2488517_-	hypothetical protein	Q9T177	Listeria_phage	7.2e-80	88.1
AKG89350.1\|2488638_2489418_-	phage antirepressor Ant	A0A059T6E7	Listeria_phage	3.8e-138	96.1
2488954:2488969	attR	NA	NA	NA	NA
AKG89351.1\|2489481_2489724_+	hypothetical protein	A0A059T7Q3	Listeria_phage	1.5e-37	98.8
AKG89352.1\|2489909_2490191_-	hypothetical protein	Q9T180	Listeria_phage	1.4e-39	96.8
AKG89353.1\|2490187_2490424_-	hypothetical protein	A0A059T5E9	Listeria_phage	3.3e-37	100.0
AKG89354.1\|2490463_2490748_-	hypothetical protein	A0A0B5D168	Listeria_phage	1.6e-46	98.9
AKG89355.1\|2490759_2490954_-	hypothetical protein	A0A059T6E5	Listeria_phage	1.3e-26	100.0
AWG43527.1\|2491018_2491249_+	hypothetical protein	Q9T185	Listeria_phage	2.3e-35	98.7
AKG89356.1\|2491177_2491444_-	hypothetical protein	A0A059T7Q1	Listeria_phage	2.5e-41	100.0
AKG89357.1\|2491447_2491699_-	XRE family transcriptional regulator	A8ATX6	Listeria_phage	7.6e-40	100.0
AKG89358.1\|2491847_2492156_+	XRE family transcriptional regulator	A8ATX5	Listeria_phage	7.8e-47	98.0
AKG89359.1\|2492186_2492678_+	hypothetical protein	A8ATX4	Listeria_phage	1.1e-90	98.8
AKG89360.1\|2492700_2492919_+	zinc ribbon domain-containing protein	A0A059T6E3	Listeria_phage	1.3e-32	97.2
AKG89361.1\|2492934_2493657_+	hypothetical protein	A0A059T7P9	Listeria_phage	7.4e-88	84.6
AKG89362.1\|2493678_2494554_+	hypothetical protein	A0A0B5D0D1	Listeria_phage	2.2e-150	94.5
AKG89363.1\|2494617_2495976_+	recombinase family protein	Q8LTD8	Listeria_phage	2.0e-251	97.1
AKG89364.1\|2495966_2496443_+	competence protein ComK	NA	NA	NA	NA
AKG89365.1\|2496497_2496845_-	XRE family transcriptional regulator	A0A0A7RTK4	Clostridium_phage	9.9e-06	40.7

DBSCAN-SWA_7

2641167 : 2649009

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKG89501.1\|2641167_2642139_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
AKG89502.1\|2642146_2643115_-	YvcK family protein	A1IMD5	Streptococcus_phage	1.8e-68	43.6
AKG89503.1\|2643116_2643992_-	RNase adaptor protein RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
AKG89504.1\|2644099_2645830_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	9.5e-174	53.1
AKG89947.2\|2645871_2646933_-	galactose mutarotase	NA	NA	NA	NA
AKG89505.1\|2646949_2647933_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.1e-52	38.7
AKG89506.1\|2648049_2649009_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP011399

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

978 : 49051

Listeria_phage(24.14%)

holin,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKG89958.1\|978_2070_+	carbohydrate-binding protein CenC	A0A059T7R4	Listeria_phage	1.7e-189	91.8
AKG89959.1\|2120_2426_+	hypothetical protein	A0A059T5E6	Listeria_phage	1.8e-43	100.0
AKG89960.1\|2425_2707_+\|holin	phage holin	A8ATW3	Listeria_phage	3.0e-45	100.0
AKG89961.1\|2706_3414_+	alkaline phosphatase	A8ATW4	Listeria_phage	1.0e-129	97.9
AKG89962.1\|3561_4263_+	DUF3800 domain-containing protein	R4IBV1	Listeria_phage	6.4e-129	97.8
AKG89963.1\|4741_4975_+	hypothetical protein	A8ATX0	Listeria_phage	2.3e-35	94.8
AKG89964.1\|4971_5163_+	hypothetical protein	A8ATC6	Listeria_phage	1.7e-28	98.4
AKG89966.1\|7253_10169_-\|transposase	DDE transposase	A0A1B0V7H9	Salmonella_phage	1.9e-174	36.7
AKG89967.1\|10172_10727_-	resolvase	A0A0F7LA37	Escherichia_phage	7.0e-38	53.4
AKG89968.1\|11006_11366_+	transcriptional regulator	E4ZFI8	Streptococcus_phage	3.1e-26	50.0
AKG89969.1\|11365_13501_+	cadmium-transporting ATPase	E4ZFI9	Streptococcus_phage	1.6e-247	64.5
AKG89970.1\|13693_14035_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
AKG89971.1\|14028_14271_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AKG89972.1\|14331_14583_-	hypothetical protein	NA	NA	NA	NA
AKG89973.1\|14713_15040_+	hypothetical protein	A0A2K9V3N4	Faecalibacterium_phage	3.2e-06	40.8
AKG89974.1\|15039_15702_+	DUF2786 domain-containing protein	NA	NA	NA	NA
AKG89975.2\|15714_16098_+	DUF3850 domain-containing protein	C9E2N9	Enterococcus_phage	2.2e-14	53.4
AKG89976.1\|16256_16745_+	hypothetical protein	NA	NA	NA	NA
AKG89977.1\|16866_17115_+	hypothetical protein	NA	NA	NA	NA
AKG89978.1\|17115_17541_+	hypothetical protein	NA	NA	NA	NA
AKG89979.1\|17544_18267_+	CRISPR-associated protein Cas5	NA	NA	NA	NA
AKG89980.1\|18282_18999_+	AP2 domain-containing protein	O03945	Lactobacillus_phage	3.8e-20	31.0
AKG89981.1\|19088_19958_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	7.1e-69	51.1
AKG89982.1\|19972_20227_-	hypothetical protein	Q6J1X3	Lactobacillus_phage	1.6e-13	46.4
AKG89983.1\|20750_22517_+	hypothetical protein	NA	NA	NA	NA
AKG89984.1\|22528_23269_+	hypothetical protein	NA	NA	NA	NA
AKG89985.1\|23556_24165_+	resolvase	A0A1W5LU24	Ralstonia_phage	1.0e-21	42.9
AKG89986.1\|24154_24382_+	hypothetical protein	NA	NA	NA	NA
AKG89987.1\|24501_24780_-	hypothetical protein	NA	NA	NA	NA
AWG43542.1\|24742_24979_+	XRE family transcriptional regulator	A0A097PBE6	Streptococcus_pyogenes_phage	6.7e-14	53.4
AKG89988.1\|25406_27521_+\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	3.4e-117	39.1
AKG89989.2\|27787_29137_+\|transposase	transposase	A0A0C5AC89	Paenibacillus_phage	1.1e-31	38.6
AKG90040.1\|29311_30046_+	ParA family protein	NA	NA	NA	NA
AKG89990.1\|30250_30595_+	hypothetical protein	NA	NA	NA	NA
AKG90041.2\|30582_31863_+	excinuclease ABC subunit A	O64031	Bacillus_phage	5.2e-92	44.9
AKG89991.1\|31913_32210_-	replication and copy control-associated protein	NA	NA	NA	NA
AKG89992.1\|32187_33162_-	chromosome partitioning protein ParA	F0PIG8	Enterococcus_phage	2.4e-33	35.0
AKG89993.1\|33901_35536_+	plasmid replication protein	NA	NA	NA	NA
AKG89994.1\|35810_36566_+	hypothetical protein	NA	NA	NA	NA
AKG89995.1\|36599_37202_-	hypothetical protein	U5P429	Shigella_phage	2.0e-33	41.7
AKG89996.2\|37278_38076_-\|transposase	transposase	A0A059NT77	Lactococcus_phage	3.3e-81	63.2
AKG89997.1\|38044_39271_-\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	4.7e-135	60.6
AWG43543.1\|39482_39599_+	hypothetical protein	NA	NA	NA	NA
AKG89998.1\|39614_39851_+	hypothetical protein	NA	NA	NA	NA
AKG89999.1\|39813_40203_+	hypothetical protein	NA	NA	NA	NA
AKG90000.1\|40205_41123_+	hypothetical protein	NA	NA	NA	NA
AKG90001.1\|41520_41760_+	hypothetical protein	NA	NA	NA	NA
AKG90002.1\|41771_42212_+	hypothetical protein	NA	NA	NA	NA
AKG90003.1\|42204_43545_+	hypothetical protein	NA	NA	NA	NA
AKG90004.1\|43555_43927_+	hypothetical protein	NA	NA	NA	NA
AKG90005.1\|43946_44711_+	Fic family protein	A0A0G3Y4Q5	Ostreid_herpesvirus	2.6e-06	29.4
AKG90006.1\|44824_45355_+	hypothetical protein	NA	NA	NA	NA
AKG90007.1\|45391_45727_-	XRE family transcriptional regulator	A0A139ZPK3	Marinitoga_camini_virus	2.8e-05	35.0
AKG90008.1\|45900_46299_+	hypothetical protein	NA	NA	NA	NA
AKG90009.1\|46302_47805_+	hypothetical protein	H2DE57	Erwinia_phage	5.2e-11	46.0
AKG90011.1\|48370_49051_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	2.6e-119	90.7

DBSCAN-SWA_2

56233 : 65698

Listeria_phage(100.0%)

integrase

attL 60041:60054|attR 65555:65568

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKG90021.1\|56233_57388_-\|integrase	site-specific integrase	A0A059T688	Listeria_phage	4.4e-207	94.3
AKG90022.1\|57519_58092_-	hypothetical protein	NA	NA	NA	NA
AKG90042.2\|58143_58596_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	2.3e-71	84.0
AKG90023.1\|58612_58936_-	XRE family transcriptional regulator	A0A059T6G1	Listeria_phage	7.2e-35	71.0
AKG90024.1\|59395_59713_-	hypothetical protein	NA	NA	NA	NA
AKG90025.1\|59778_59982_+	XRE family transcriptional regulator	A0A059T5F8	Listeria_phage	3.1e-28	100.0
AKG90026.1\|59983_60226_+	hypothetical protein	A8ATD2	Listeria_phage	1.4e-43	100.0
60041:60054	attL	NA	NA	NA	NA
AKG90027.1\|60228_60414_+	hypothetical protein	A0A059T7Z3	Listeria_phage	4.4e-29	98.4
AKG90028.1\|60937_61651_+	SAM-dependent DNA methyltransferase	A8ATD5	Listeria_phage	5.4e-131	98.3
AKG90029.1\|61661_62606_+\|integrase	site-specific integrase	A8ATD6	Listeria_phage	2.7e-178	99.0
AKG90030.1\|62618_63299_+	hypothetical protein	A8ATD7	Listeria_phage	1.1e-120	96.5
AKG90031.1\|63295_63871_+	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	1.0e-31	42.9
AKG90032.1\|63863_64052_+	hypothetical protein	NA	NA	NA	NA
AKG90033.1\|64213_64420_+	hypothetical protein	NA	NA	NA	NA
AKG90034.1\|64406_64811_+	hypothetical protein	R4ICD6	Listeria_phage	1.2e-42	66.4
AKG90036.1\|64984_65698_+	pentapeptide repeat-containing protein	A8ATE4	Listeria_phage	1.9e-35	89.0
65555:65568	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP011398

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP011399

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection