CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026063	Staphylococcus aureus strain NRS149 chromosome, complete genome	11 crisprs	csa3,RT,WYL,cas3,DEDDh,DinG	11	3	9	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP026063_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026063_1

135282-135363

Orphan

Consensus_repeat	Method
GGCCCCCACCCCAACTTACATTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026063_1

>merge|CP026063|1|135282-135363|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGTTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCCACCCCAACTTGCATTGT

>CP026063|1|1|135282-135363|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGT	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG
GGCCCCCACCCCAACTTGCATTGT

Protein	Signature genes	Signature genes Name	Protein_function
CP026063.1\|AUU41221.1\|131308_132325_-\|bi-component-leukocidin-LukGH-subunit-G	unknown	unknown	gnl\|CDD\|369625
CP026063.1\|AUU41216.1\|128069_128252_+\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU41230.1\|142713_143499_+\|carbon-nitrogen-family-hydrolase	unknown	unknown	gnl\|CDD\|143607
CP026063.1\|AUU41233.1\|145034_145178_+\|cyclic-lactone-autoinducer-peptide	unknown	unknown	gnl\|CDD\|129030
CP026063.1\|AUU41226.1\|139043_139328_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
CP026063.1\|AUU41214.1\|126716_126941_-\|DUF739-domain-containing-protein	unknown	unknown	gnl\|CDD\|283090
CP026063.1\|AUU41229.1\|141726_142353_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
CP026063.1\|AUU41219.1\|129152_130190_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
CP026063.1\|AUU41218.1\|128430_129045_-\|ATPase	unknown	unknown	unknown
CP026063.1\|AUU41223.1\|133837_135061_+\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|181490
CP026063.1\|AUU41232.1\|144468_145032_+\|accessory-gene-regulator-AgrB	unknown	unknown	gnl\|CDD\|226899
CP026063.1\|AUU41220.1\|130246_131071_+\|sphingomyelin-phosphodiesterase	unknown	unknown	gnl\|CDD\|132436
CP026063.1\|AUU41215.1\|127099_127870_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
CP026063.1\|AUU41228.1\|140270_141530_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236768
CP026063.1\|AUU41225.1\|137351_138968_-\|molecular-chaperone-GroEL	unknown	unknown	gnl\|CDD\|234573
CP026063.1\|AUU41227.1\|139502_140246_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
CP026063.1\|AUU41217.1\|128287_128434_+\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU41224.1\|135504_136812_+\|TrkH-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|273349
CP026063.1\|AUU41222.1\|132346_133402_-\|bi-component-leukocidin-LukGH-subunit-H	unknown	unknown	gnl\|CDD\|369625
CP026063.1\|AUU41231.1\|144098_144233_-\|delta-lysin-family-phenol-soluble-modulin	unknown	unknown	gnl\|CDD\|173213

Protein	Function_ID	Function_description	E-value
CP026063.1\|AUU41221.1\|131308_132325_-\|bi-component-leukocidin-LukGH-subunit-G	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.05827e-99
CP026063.1\|AUU41231.1\|144098_144233_-\|delta-lysin-family-phenol-soluble-modulin	gnl\|CDD\|173213	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin.	8.25732e-15
CP026063.1\|AUU41230.1\|142713_143499_+\|carbon-nitrogen-family-hydrolase	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	5.69545e-126
CP026063.1\|AUU41233.1\|145034_145178_+\|cyclic-lactone-autoinducer-peptide	gnl\|CDD\|129030	smart00794, AgrD, Staphylococcal AgrD protein. This family consists of several AgrD proteins from many Staphylococcus species. The agr locus was initially described in Staphylococcus aureus as an element controlling the production of exoproteins implicated in virulence. Its pattern of action has been shown to be complex, upregulating certain extracellular toxins and enzymes expressed post-exponentially and repressing some exponential-phase surface components. AgrD encodes the precursor of the autoinducing peptide (AIP).The AIP derived from AgrD by the action of AgrB interacts with AgrC in the membrane to activate AgrA, which upregulates transcription both from promoter P2, amplifying the response, and from P3, initiating the production of a novel effector: RNAIII. In S. aureus, delta-hemolysin is the only translation product of RNA III and is not involved in the regulatory functions of the transcript, which is therefore the primary agent for modulating the expression of other operons controlled by agr.	3.13559e-15
CP026063.1\|AUU41226.1\|139043_139328_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.94304e-45
CP026063.1\|AUU41214.1\|126716_126941_-\|DUF739-domain-containing-protein	gnl\|CDD\|283090	pfam05339, DUF739, Protein of unknown function (DUF739). This family contains several bacteriophage proteins. Some of the proteins in this family have been labeled putative cro repressor proteins.	5.39821e-42
CP026063.1\|AUU41229.1\|141726_142353_+\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	8.42197e-117
CP026063.1\|AUU41219.1\|129152_130190_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.55661e-25
CP026063.1\|AUU41227.1\|139502_140246_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.67124e-11
CP026063.1\|AUU41223.1\|133837_135061_+\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	0
CP026063.1\|AUU41232.1\|144468_145032_+\|accessory-gene-regulator-AgrB	gnl\|CDD\|226899	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription].	6.65966e-71
CP026063.1\|AUU41220.1\|130246_131071_+\|sphingomyelin-phosphodiesterase	gnl\|CDD\|132436	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins. [Cellular processes, Pathogenesis].	2.2954e-127
CP026063.1\|AUU41215.1\|127099_127870_+\|transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.42295e-15
CP026063.1\|AUU41228.1\|140270_141530_-\|hypothetical-protein	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	6.51148e-10
CP026063.1\|AUU41225.1\|137351_138968_-\|molecular-chaperone-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
CP026063.1\|AUU41224.1\|135504_136812_+\|TrkH-family-potassium-uptake-protein	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	7.96864e-82
CP026063.1\|AUU41222.1\|132346_133402_-\|bi-component-leukocidin-LukGH-subunit-H	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.84035e-77

>CP026063.1|AUU41223.1|133837_135061_+|succinyl-diaminopimelate-desuccinylase
MTTFSEKEKIQLLADIVELQTENNNEIDVCNYLKDLFDKYDIKSEILKVNEHRANIVAEIGNGSPILALSGHMDVVDAGNQDNWTYPPFQLTEKAGKLYGRGTTDMKGGLMALVITLIELKEQNQLPQGTIRLLATAGEEKEQEGAKLLADKGYLDDVDGLIIAEPTGSGIYYAHKGSMSCKVTATGKAVHSSVPFIGDNAIDTLLEFYNQFKEKYSELKKHDTKHELDVAPMFKSLIGKEISEEDANYASGLTAVCSIINGGKQFNSVPDEASLEFNVRPVPEYDNDFIESFFQNIINDVDSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVEQDEIFVSALVGATDASSFLGDNKDNVDLAIFGPGNPLMAHQIDEYIEKDMYLKYIDIFKEASIQYLKEK
>CP026063.1|AUU41222.1|132346_133402_-|bi-component-leukocidin-LukGH-subunit-H
MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKNSTVPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKFESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKFDSTKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLFYRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDILKNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG
>CP026063.1|AUU41221.1|131308_132325_-|bi-component-leukocidin-LukGH-subunit-G
MIKQLYKNITICSLAISTALTVFPATSYAKINSEIKAVSEKNLDGDTKMYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGYWNSTLRWPGSYSVSIQNVDDNNNTNVTDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKESNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMGHDHTRQLTNDSDNRTKSEIFSLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDKGKSQFVVHYKRSMDEFKIDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHDVKFVKVLNDNEKK
>CP026063.1|AUU41220.1|130246_131071_+|sphingomyelin-phosphodiesterase
MYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
>CP026063.1|AUU41219.1|129152_130190_+|site-specific-integrase
MKTRCYDGKKWQYEFKHEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDNYITLAEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIMDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILESM
>CP026063.1|AUU41218.1|128430_129045_-|ATPase
MTQFLGALLLTGVLGYIPYKYLTMIGLVSEKNKIINTPVLLIFSIETCLIWFYTFIIFNNVDLKNLSLLQLLTGLKANIWFLIIFVLTVLVFNPLIVKFIIWLINETRKFMNLDCISLLDKRDKLFNNNGKPVFIVIKDFENRIIEEGELKTYNSAGSDFDLLEVERQDFKVSDLPSNDELYIKHTLVDLKQQIKLDLYLMNEY
>CP026063.1|AUU41217.1|128287_128434_+|hypothetical-protein
MNGGENFMADKNKKQEATRSNPINKSFEKPGASENLKSTLSEKAKKKD
>CP026063.1|AUU41216.1|128069_128252_+|hypothetical-protein
MKITNCKIKKETIVYEVLTSGNQPFTYELPKDLSSHNARKYLEFISQKLDGDKLTKEDSL
>CP026063.1|AUU41215.1|127099_127870_+|transcriptional-regulator
MREKVSNRLKHIMKIRNLKQVDIINKSKPYQKKLGISLSKSTLSQYINDVQSPDQDRIYLLSKTLNVGEAWLMGYDVDSYRVPDEERQDETIMSKINNIFSQLTPPRQENVLNYANEQLEEQNKVTSIDGYKESKLVSYIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDSIKDGTIALVVLDGVSLIKRVDICEDYINLVSLNPKYDDIKVASFSDIKVMGKVVL
>CP026063.1|AUU41214.1|126716_126941_-|DUF739-domain-containing-protein
MCYDYSRLSGKIVEKYGTQYNFAIAMKLSERSLSLKLNGKVGWKDSEIWKAIQLLDIPVEKIHLYFFKEKVHFI
>CP026063.1|AUU41224.1|135504_136812_+|TrkH-family-potassium-uptake-protein
MNKVHKPLYFYLMLFFSTTIIGALLLYLPFTGKKPISFLDALFIASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNRFLIMVTWNIDEPGGVIKLIKHLAIYSLVTELIGMICLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDYSSDPIVIITISILIIFGGIGHFVVIDFINCKKLSKLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQHMGLVEKIGNSFFQSVTTRTAGFNSIDIASINKSTALMLMLLMFIGGAPLSAAGGIKITTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINPNISLIKLLFEVVSAFGTVGLSMNLTTEYHGITKIIIIFVMLCGKVGLLTLLRTFIPPKSPKNYRYTKGQIYL
>CP026063.1|AUU41225.1|137351_138968_-|molecular-chaperone-GroEL
MVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDASIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM
>CP026063.1|AUU41226.1|139043_139328_-|co-chaperone-GroES
MLKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE
>CP026063.1|AUU41227.1|139502_140246_+|CPBP-family-intramembrane-metalloprotease
MTRLWASLLTVIIYILSQFLPLLIVKKLPFVQYSGIELTKAVIYIQLVLFLIAATTIILINLKIKNPTKLELEVKEPKKYIIPWALLGFALVMIYQMVVSIVLTQIYGGQQVSPNTEKLIIIARKIPIFIFFVSIIGPLLEEYVFRKVIFGELFNAIKGNRIVAFIIATTVSSLIFALAHNDFKFIPVYFGMGVIFSLAYVWTKRLAVPIIIHMLQNGFVVIFQLLNPEALKKATEQANFIYHIFIP
>CP026063.1|AUU41228.1|140270_141530_-|hypothetical-protein
MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNITSPSVNSEMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNPSPNPKPDPDNPKPKPDPKPDPDKPKPNLDPKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDKPKPNPNPKPDPNKPNPNPSPDPDQPGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNESQRR
>CP026063.1|AUU41229.1|141726_142353_+|nitroreductase-family-protein
MGLFKKDKKAMTFDNAMEERRSIYNLKDSISISDDELESMIAHAVKHVPSSFNSQSTRIVLLLNDNNNKFWDNTKAILKEVMGENRDFEPTEQKIDNFKHSYGTILFYEDQDVVSGLQEQMPNYYDNFAIWSTQTNAMHQFAIWTALATKGIGASLQHYNPLVDEMTSKEFNIPKSWKLIAQMPFGDIREAAGEKTFNPVEDRFVIKK
>CP026063.1|AUU41230.1|142713_143499_+|carbon-nitrogen-family-hydrolase
MKVQIYQLPIIFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNYQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGENVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK
>CP026063.1|AUU41231.1|144098_144233_-|delta-lysin-family-phenol-soluble-modulin
MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK
>CP026063.1|AUU41232.1|144468_145032_+|accessory-gene-regulator-AgrB
MNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQIIVGNFFKILVTYSISIFLSVFLFTLVTHLSYMLIRYNAHGAHAKSSILCYIQSILTFVFVPYFLINIDINFTYLLALSIIGLISVVIYAPAATKKQPIPIKLVKRKKYLSIIMYLLVLILSLIIHPFYAQFMLLGILVESITLLPIFFPKED
>CP026063.1|AUU41233.1|145034_145178_+|cyclic-lactone-autoinducer-peptide
MNTLVNMFFDFIIKLAKAIGIVGGVNACSSLFDEPKVPAELTNLYDK

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Crispr_ID: CP026063_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026063_2

264539-264619

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP026063_2

>merge|CP026063|2|264539-264619|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTCAACTTTAGTTGTTAGGGGCTTCT

>CP026063|2|2|264539-264619|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCATGCGCTTAGCGCAGGCGCTCCTACTTTT
CAACTTTAGTTGTTAGGGGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP026063.1\|AUU41348.1\|263430_264522_+\|transcriptional-regulator	unknown	unknown	unknown
CP026063.1\|AUU41353.1\|266554_267412_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
CP026063.1\|AUU41357.1\|272552_274685_+\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226234
CP026063.1\|AUU41355.1\|268493_270299_-\|glutamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
CP026063.1\|AUU41341.1\|256498_256912_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
CP026063.1\|AUU41356.1\|270979_272518_+\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
CP026063.1\|AUU41350.1\|265491_265674_-\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU41344.1\|259674_260613_-\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
CP026063.1\|AUU41352.1\|266333_266426_+\|erm-Leader-peptide	unknown	unknown	unknown
CP026063.1\|AUU41345.1\|261048_261714_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
CP026063.1\|AUU41351.1\|265738_265897_+\|integrase	unknown	unknown	unknown
CP026063.1\|AUU41347.1\|262187_263165_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
CP026063.1\|AUU41339.1\|255024_255735_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP026063.1\|AUU41340.1\|255855_256299_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
CP026063.1\|AUU41354.1\|267479_268262_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
CP026063.1\|AUU41343.1\|259413_259644_-\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU41358.1\|274696_275131_+\|PTS-mannitol-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
CP026063.1\|AUU41349.1\|264954_265059_-\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU41342.1\|257368_258742_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
CP026063.1\|AUU41346.1\|261865_262186_+\|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042

Protein	Function_ID	Function_description	E-value
CP026063.1\|AUU41339.1\|255024_255735_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP026063.1\|AUU41357.1\|272552_274685_+\|PRD-domain-containing-protein	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.02509e-68
CP026063.1\|AUU41355.1\|268493_270299_-\|glutamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP026063.1\|AUU41341.1\|256498_256912_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
CP026063.1\|AUU41356.1\|270979_272518_+\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP026063.1\|AUU41353.1\|266554_267412_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	6.8047e-59
CP026063.1\|AUU41345.1\|261048_261714_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
CP026063.1\|AUU41342.1\|257368_258742_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	4.11455e-06
CP026063.1\|AUU41340.1\|255855_256299_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
CP026063.1\|AUU41354.1\|267479_268262_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.29094e-106
CP026063.1\|AUU41358.1\|274696_275131_+\|PTS-mannitol-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	6.3218e-61
CP026063.1\|AUU41344.1\|259674_260613_-\|mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP026063.1\|AUU41347.1\|262187_263165_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.49165e-107
CP026063.1\|AUU41346.1\|261865_262186_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17

>CP026063.1|AUU41348.1|263430_264522_+|transcriptional-regulator
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP026063.1|AUU41347.1|262187_263165_+|cation-transporter
MSHSHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>CP026063.1|AUU41346.1|261865_262186_+|ArsR-family-transcriptional-regulator
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP026063.1|AUU41345.1|261048_261714_-|SDR-family-NAD(P)-dependent-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>CP026063.1|AUU41344.1|259674_260613_-|mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP026063.1|AUU41343.1|259413_259644_-|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP026063.1|AUU41342.1|257368_258742_-|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVKKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP026063.1|AUU41341.1|256498_256912_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP026063.1|AUU41340.1|255855_256299_-|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP026063.1|AUU41339.1|255024_255735_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>CP026063.1|AUU41349.1|264954_265059_-|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>CP026063.1|AUU41350.1|265491_265674_-|hypothetical-protein
MIIFRFKVNAFFPVKLCLMIRFCLESCCIFRRHLLITFHNIRSKFIMFKYISSKCIICTG
>CP026063.1|AUU41351.1|265738_265897_+|integrase
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>CP026063.1|AUU41352.1|266333_266426_+|erm-Leader-peptide
MTYGSIVAILCALFVIFFIPYMEKKDKKKK
>CP026063.1|AUU41353.1|266554_267412_-|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>CP026063.1|AUU41354.1|267479_268262_-|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATTGGVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHHLLKLVGISAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLNILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP026063.1|AUU41355.1|268493_270299_-|glutamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP026063.1|AUU41356.1|270979_272518_+|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP026063.1|AUU41357.1|272552_274685_+|PRD-domain-containing-protein
MLLSTREKEMIALLIKYHSQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP026063.1|AUU41358.1|274696_275131_+|PTS-mannitol-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMRNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA

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Crispr_ID: CP026063_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026063_4

384904-384984

Orphan

Consensus_repeat	Method
TCTATGTTGGGGCCCCGCCAACTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026063_4

>merge|CP026063|4|384904-384984|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTG

>CP026063|4|4|384904-384984|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTG	CACATTATTGTAAGCTGACTTTCTGTCAGCT
TCTGTGTTGGGGCCCCGCCAACTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP026063.1\|AUU41463.1\|381528_382293_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
CP026063.1\|AUU41479.1\|391485_392091_-\|molybdenum-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226628
CP026063.1\|AUU41467.1\|384676_384862_+\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU41464.1\|382454_382895_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP026063.1\|AUU41458.1\|375437_375602_+\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU41472.1\|386775_387009_-\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|340452
CP026063.1\|AUU41476.1\|389278_389773_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
CP026063.1\|AUU41465.1\|382887_384099_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
CP026063.1\|AUU41473.1\|387014_387461_-\|molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391
CP026063.1\|AUU41475.1\|387956_389216_-\|molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
CP026063.1\|AUU41462.1\|381285_381537_+\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU41477.1\|389774_390281_-\|molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223595
CP026063.1\|AUU41461.1\|379631_380897_-\|lipid-II:glycine-glycyltransferase-FemX	unknown	unknown	gnl\|CDD\|225224
CP026063.1\|AUU41460.1\|376347_379515_-\|multidrug-transporter	unknown	unknown	gnl\|CDD\|223911
CP026063.1\|AUU41459.1\|375846_376164_+\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU41478.1\|390311_391316_-\|molybdopterin-biosynthesis-protein-MoeB	unknown	unknown	gnl\|CDD\|181084
CP026063.1\|AUU41466.1\|384200_384551_-\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
CP026063.1\|AUU41470.1\|385127_386150_-\|cyclic-pyranopterin-monophosphate-synthase	unknown	unknown	gnl\|CDD\|274250
CP026063.1\|AUU41474.1\|387474_387960_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
CP026063.1\|AUU41471.1\|386169_386769_-\|molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725

Protein	Function_ID	Function_description	E-value
CP026063.1\|AUU41479.1\|391485_392091_-\|molybdenum-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	1.78595e-116
CP026063.1\|AUU41472.1\|386775_387009_-\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25
CP026063.1\|AUU41471.1\|386169_386769_-\|molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	2.15389e-66
CP026063.1\|AUU41464.1\|382454_382895_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.35323e-15
CP026063.1\|AUU41476.1\|389278_389773_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	2.93711e-97
CP026063.1\|AUU41465.1\|382887_384099_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.92881e-73
CP026063.1\|AUU41473.1\|387014_387461_-\|molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	6.99133e-58
CP026063.1\|AUU41463.1\|381528_382293_-\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50083e-38
CP026063.1\|AUU41461.1\|379631_380897_-\|lipid-II:glycine-glycyltransferase-FemX	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	1.81413e-143
CP026063.1\|AUU41460.1\|376347_379515_-\|multidrug-transporter	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP026063.1\|AUU41475.1\|387956_389216_-\|molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	4.50966e-159
CP026063.1\|AUU41478.1\|390311_391316_-\|molybdopterin-biosynthesis-protein-MoeB	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	6.83722e-133
CP026063.1\|AUU41466.1\|384200_384551_-\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
CP026063.1\|AUU41470.1\|385127_386150_-\|cyclic-pyranopterin-monophosphate-synthase	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.0538e-165
CP026063.1\|AUU41474.1\|387474_387960_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	9.59347e-51
CP026063.1\|AUU41477.1\|389774_390281_-\|molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	2.42221e-64

>CP026063.1|AUU41467.1|384676_384862_+|hypothetical-protein
MFRFISFGQLVVYSTTFIPKKDILQLNDLECDINVKEPLKINYVVIFGSGTEITFSQNLFR
>CP026063.1|AUU41466.1|384200_384551_-|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>CP026063.1|AUU41465.1|382887_384099_+|MFS-transporter
MTNQGSLNKSPIFTKSFTINFFVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETDVINKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>CP026063.1|AUU41464.1|382454_382895_+|MarR-family-transcriptional-regulator
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>CP026063.1|AUU41463.1|381528_382293_-|VOC-family-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>CP026063.1|AUU41462.1|381285_381537_+|hypothetical-protein
MRTIILSLFIIMNIVAIIMTLSQPLTVNYFSLRVILIFFTFILSIFFILIKSSRLNNILTILSIVLVIIHMGILAHSTYVYLY
>CP026063.1|AUU41461.1|379631_380897_-|lipid-II:glycine-glycyltransferase-FemX
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYILNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>CP026063.1|AUU41460.1|376347_379515_-|multidrug-transporter
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASAPNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHVDGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>CP026063.1|AUU41459.1|375846_376164_+|hypothetical-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>CP026063.1|AUU41458.1|375437_375602_+|hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>CP026063.1|AUU41470.1|385127_386150_-|cyclic-pyranopterin-monophosphate-synthase
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>CP026063.1|AUU41471.1|386169_386769_-|molybdenum-cofactor-guanylyltransferase
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNIYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>CP026063.1|AUU41472.1|386775_387009_-|molybdopterin-synthase-sulfur-carrier-subunit
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>CP026063.1|AUU41473.1|387014_387461_-|molybdopterin-synthase-catalytic-subunit
MKQFEIVIEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>CP026063.1|AUU41474.1|387474_387960_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKTHGYTVATIKHHGHAKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRDEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>CP026063.1|AUU41475.1|387956_389216_-|molybdopterin-molybdenumtransferase
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETKTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQKDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>CP026063.1|AUU41476.1|389278_389773_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIFKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSGQ
>CP026063.1|AUU41477.1|389774_390281_-|molybdenum-cofactor-biosynthesis-protein
MGEHQNVKLNRTVKAAVLTVSDTRDFVTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>CP026063.1|AUU41478.1|390311_391316_-|molybdopterin-biosynthesis-protein-MoeB
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDGCIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>CP026063.1|AUU41479.1|391485_392091_-|molybdenum-ABC-transporter-ATP-binding-protein
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTTKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSKHIDQLIQTLNINHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG

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Crispr_ID: CP026063_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026063_5

1238503-1238604

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026063_5

>merge|CP026063|5|1238503-1238604|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>CP026063|5|5|1238503-1238604|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP026063.1\|AUU42253.1\|1238036_1238294_-\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU42262.1\|1247376_1248081_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
CP026063.1\|AUU42249.1\|1234358_1234928_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
CP026063.1\|AUU42252.1\|1237727_1237826_+\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU42259.1\|1243303_1244770_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
CP026063.1\|AUU42258.1\|1241997_1243266_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
CP026063.1\|AUU42260.1\|1244794_1246336_+\|GMP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|234614
CP026063.1\|AUU42255.1\|1239694_1240357_-\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU42248.1\|1232819_1234343_-\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
CP026063.1\|AUU42251.1\|1236254_1237643_-\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
CP026063.1\|AUU42257.1\|1241419_1241998_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
CP026063.1\|AUU42263.1\|1248479_1248752_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225511
CP026063.1\|AUU42246.1\|1231096_1231480_-\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU42261.1\|1246448_1246985_-\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU42254.1\|1238620_1239577_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
CP026063.1\|AUU42245.1\|1230449_1231031_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
CP026063.1\|AUU42247.1\|1231749_1232376_-\|NDxxF-motif-lipoprotein	unknown	unknown	gnl\|CDD\|380196
CP026063.1\|AUU42250.1\|1235419_1236175_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
CP026063.1\|AUU42244.1\|1230062_1230272_-\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU42256.1\|1240499_1240907_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584

Protein	Function_ID	Function_description	E-value
CP026063.1\|AUU42259.1\|1243303_1244770_+\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
CP026063.1\|AUU42258.1\|1241997_1243266_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	5.74823e-170
CP026063.1\|AUU42249.1\|1234358_1234928_-\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
CP026063.1\|AUU42262.1\|1247376_1248081_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	5.38181e-08
CP026063.1\|AUU42248.1\|1232819_1234343_-\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
CP026063.1\|AUU42251.1\|1236254_1237643_-\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
CP026063.1\|AUU42263.1\|1248479_1248752_-\|hypothetical-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.23077e-11
CP026063.1\|AUU42260.1\|1244794_1246336_+\|GMP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
CP026063.1\|AUU42254.1\|1238620_1239577_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00265416
CP026063.1\|AUU42245.1\|1230449_1231031_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.4566e-49
CP026063.1\|AUU42247.1\|1231749_1232376_-\|NDxxF-motif-lipoprotein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.15385e-71
CP026063.1\|AUU42250.1\|1235419_1236175_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	4.50551e-88
CP026063.1\|AUU42257.1\|1241419_1241998_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.01486e-119
CP026063.1\|AUU42256.1\|1240499_1240907_-\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.17298e-12

>CP026063.1|AUU42253.1|1238036_1238294_-|hypothetical-protein
MLVNDESHKGTLIFTFTTNAFFLKQKYLFTVAFELPPAHTNPQKMLILIRQNFLQRVCSKRLFKVDHLLSFYSINMRLAIFIKPS
>CP026063.1|AUU42252.1|1237727_1237826_+|hypothetical-protein
MQLNVNMMKFDRWHKGICKQIVLNLVEKGEKG
>CP026063.1|AUU42251.1|1236254_1237643_-|L-cystine-transporter
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLVYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFESNDNAALTSH
>CP026063.1|AUU42250.1|1235419_1236175_+|NADPH-dependent-oxidoreductase
MSDYVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>CP026063.1|AUU42249.1|1234358_1234928_-|peroxiredoxin
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>CP026063.1|AUU42248.1|1232819_1234343_-|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDEKSKELKELLTEISDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKNLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMSTGEEHLLNLDGIFVQIGLLPNTSWLKDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>CP026063.1|AUU42247.1|1231749_1232376_-|NDxxF-motif-lipoprotein
MKKRLLLSTFLASALILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>CP026063.1|AUU42246.1|1231096_1231480_-|hypothetical-protein
MKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIILMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFISAIITLAIGGKSVDKNDSH
>CP026063.1|AUU42245.1|1230449_1231031_+|histidine-phosphatase-family-protein
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYEKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAHQVVIRCLMVYFNKVSREEAVDLKVENCKPYIIE
>CP026063.1|AUU42244.1|1230062_1230272_-|hypothetical-protein
MTTQSFIFMNIILLDGATQRHPFFICQILAFLFPKFPHINLLLFYPILSTFSNIIIHIDHFHANKKDDN
>CP026063.1|AUU42254.1|1238620_1239577_-|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKVLAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNENAAETSNKEATVDADAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>CP026063.1|AUU42255.1|1239694_1240357_-|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>CP026063.1|AUU42256.1|1240499_1240907_-|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHKEVQEHNSAYEEIDITHFAEASKGPKA
>CP026063.1|AUU42257.1|1241419_1241998_+|xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE
>CP026063.1|AUU42258.1|1241997_1243266_+|purine-permease
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILVLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>CP026063.1|AUU42259.1|1243303_1244770_+|IMP-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>CP026063.1|AUU42260.1|1244794_1246336_+|GMP-synthase-(glutamine-hydrolyzing)
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCKGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>CP026063.1|AUU42261.1|1246448_1246985_-|hypothetical-protein
MHNKNEFNKKLKDFIGSDKRMALVKGYINEYKLTTVLRALNNSDYTKGTIHTRSIGNLKQIVDNRIIPKNITQNKIFKLSNLTLEVNLYERNTIYHGDFAIYYPVESALIIETDTPRLINHINNNPVQKIFIITTNDWSFNTLELEKIVDETIIYDLKQEDPKQYEILYKNKHGKLPY
>CP026063.1|AUU42262.1|1247376_1248081_-|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYKSFSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESVLNLTATDLKKQIIDISSKVQALTQKYRDIDIKLSTEDKKLLSNLNQKANELYRVIGVYSKHKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
>CP026063.1|AUU42263.1|1248479_1248752_-|hypothetical-protein
MTKERRTFSSEFKLQMVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI

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Crispr_ID: CP026063_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026063_6

1594068-1594150

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026063_6

>merge|CP026063|6|1594068-1594150|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>CP026063|6|6|1594068-1594150|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP026063.1\|AUU42576.1\|1594797_1595715_-\|lipid-kinase	unknown	unknown	gnl\|CDD\|224513
CP026063.1\|AUU42573.1\|1593376_1593919_+\|5'(3')-deoxyribonucleotidase	unknown	unknown	gnl\|CDD\|226895
CP026063.1\|AUU42568.1\|1585357_1587241_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223562
CP026063.1\|AUU42565.1\|1580975_1581686_+\|allophanate-hydrolase	unknown	unknown	gnl\|CDD\|224960
CP026063.1\|AUU42567.1\|1583147_1585088_+\|lipoteichoic-acid-synthase	unknown	unknown	gnl\|CDD\|224287
CP026063.1\|AUU42583.1\|1600017_1600416_+\|protein-NrdI	unknown	unknown	gnl\|CDD\|224694
CP026063.1\|AUU42575.1\|1594361_1594529_+\|nitrogen-fixation-protein-NifR	unknown	unknown	unknown
CP026063.1\|AUU42581.1\|1598350_1599217_-\|EamA/RhaT-family-transporter	unknown	unknown	gnl\|CDD\|223769
CP026063.1\|AUU42584.1\|1600378_1602484_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236069
CP026063.1\|AUU42578.1\|1595984_1597490_-\|peptide-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225646
CP026063.1\|AUU42566.1\|1581669_1582674_+\|allophanate-hydrolase	unknown	unknown	gnl\|CDD\|224895
CP026063.1\|AUU42579.1\|1597555_1597801_-\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU42569.1\|1587252_1589034_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
CP026063.1\|AUU42570.1\|1589255_1590233_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
CP026063.1\|AUU42571.1\|1590225_1591740_+\|glycine/betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|270328
CP026063.1\|AUU42577.1\|1595805_1595907_+\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU42564.1\|1580681_1580888_+\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU42572.1\|1591979_1593038_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235106
CP026063.1\|AUU42580.1\|1597830_1598331_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|223851
CP026063.1\|AUU42582.1\|1599601_1599868_+\|ribonucleoside-diphosphate-reductase	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP026063.1\|AUU42573.1\|1593376_1593919_+\|5'(3')-deoxyribonucleotidase	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	3.14113e-108
CP026063.1\|AUU42565.1\|1580975_1581686_+\|allophanate-hydrolase	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	1.34598e-94
CP026063.1\|AUU42567.1\|1583147_1585088_+\|lipoteichoic-acid-synthase	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
CP026063.1\|AUU42583.1\|1600017_1600416_+\|protein-NrdI	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
CP026063.1\|AUU42568.1\|1585357_1587241_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
CP026063.1\|AUU42581.1\|1598350_1599217_-\|EamA/RhaT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.04233e-10
CP026063.1\|AUU42584.1\|1600378_1602484_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
CP026063.1\|AUU42578.1\|1595984_1597490_-\|peptide-ABC-transporter-permease	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.22605e-172
CP026063.1\|AUU42576.1\|1594797_1595715_-\|lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	7.55646e-79
CP026063.1\|AUU42566.1\|1581669_1582674_+\|allophanate-hydrolase	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	1.25641e-144
CP026063.1\|AUU42570.1\|1589255_1590233_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	1.28246e-155
CP026063.1\|AUU42571.1\|1590225_1591740_+\|glycine/betaine-ABC-transporter-permease	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.03165e-152
CP026063.1\|AUU42580.1\|1597830_1598331_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	7.91282e-79
CP026063.1\|AUU42572.1\|1591979_1593038_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
CP026063.1\|AUU42569.1\|1587252_1589034_+\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0

>CP026063.1|AUU42573.1|1593376_1593919_+|5'(3')-deoxyribonucleotidase
MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>CP026063.1|AUU42572.1|1591979_1593038_+|histidinol-phosphate-transaminase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPPHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKNSVERERFYQLPQSEYFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNDKMLEVLSNFKYE
>CP026063.1|AUU42571.1|1590225_1591740_+|glycine/betaine-ABC-transporter-permease
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>CP026063.1|AUU42570.1|1589255_1590233_+|ABC-transporter-ATP-binding-protein
MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLDMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQHLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD
>CP026063.1|AUU42569.1|1587252_1589034_+|DNA-helicase-RecQ
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>CP026063.1|AUU42568.1|1585357_1587241_+|ABC-transporter-ATP-binding-protein
MGMEAYKIEHLNKSYADKTIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQAVQAYADDQSDKLFKRMIDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREESEVAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSYTTVRKKNGLSYKEKLEYEQLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>CP026063.1|AUU42567.1|1583147_1585088_+|lipoteichoic-acid-synthase
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK
>CP026063.1|AUU42566.1|1581669_1582674_+|allophanate-hydrolase
MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRLVANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLKFRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTARHHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKVTSKANRMGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
>CP026063.1|AUU42565.1|1580975_1581686_+|allophanate-hydrolase
MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDIESLLKHYKIKLETFIELHSKTQYFVSMMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN
>CP026063.1|AUU42564.1|1580681_1580888_+|hypothetical-protein
MIIVYIVLLLILVYVNYRLVNRLLSENRIYVVRLIVTITTVISFILVYALIHELMPFVVRAMDLMYHQ
>CP026063.1|AUU42575.1|1594361_1594529_+|nitrogen-fixation-protein-NifR
MQVGVGRRNKFCENIISVPLPPIFKYTLALTNDKESLHNQSLVVLYHFRPALNKC
>CP026063.1|AUU42576.1|1594797_1595715_-|lipid-kinase
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMSHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILTANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>CP026063.1|AUU42577.1|1595805_1595907_+|hypothetical-protein
MVITDIDVYRVGRENIVIAVYNEHIKLLFILIS
>CP026063.1|AUU42578.1|1595984_1597490_-|peptide-ABC-transporter-permease
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>CP026063.1|AUU42579.1|1597555_1597801_-|hypothetical-protein
MIFLTYWCVFHLAYIIGYIKITFYTKVHQKNISTRIKQHFYRNLLHFNVNKYIFILSLINCARLITEYSQYFYFFVICWNI
>CP026063.1|AUU42580.1|1597830_1598331_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYPEKIDNR
>CP026063.1|AUU42581.1|1598350_1599217_-|EamA/RhaT-family-transporter
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFFLYKYHQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSSREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFVLFGESPDFYATLGYVVIIGASYYMFEKARRDAKIIKK
>CP026063.1|AUU42582.1|1599601_1599868_+|ribonucleoside-diphosphate-reductase
MCLMYNETHNIVLVKRKRHNILCFVCKCFIYEEITFKSNLTQKFNSYYQLIVIFLENVLSKWKISNDVNTTYSDFYTFNPYKLLFSQI
>CP026063.1|AUU42583.1|1600017_1600416_+|protein-NrdI
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>CP026063.1|AUU42584.1|1600378_1602484_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI

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Crispr_ID: CP026063_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026063_7

1636535-1636613

Unclear

Consensus_repeat	Method
TGTAGAATTTCTTTTCGAAATTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026063_7

>merge|CP026063|7|1636535-1636613|CRISPRCasFinder
TGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCGCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCT

>CP026063|7|7|1636535-1636613|CRISPRCasFinder
TGTAGAATTTCTTTTCGAAATTCT	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC
TGTAGAATTTCTTTTCGAAATTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP026063.1\|AUU42620.1\|1641937_1642126_-\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU42616.1\|1637809_1638649_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP026063.1\|AUU42605.1\|1622332_1622905_+\|ribosomal-subunit-interface-protein	unknown	unknown	gnl\|CDD\|224461
CP026063.1\|AUU42611.1\|1630216_1630867_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|378993
CP026063.1\|AUU42612.1\|1630863_1631100_+\|DUF2198-domain-containing-protein	unknown	unknown	gnl\|CDD\|227234
CP026063.1\|AUU42610.1\|1629203_1630043_+\|peptidase-M23	unknown	unknown	gnl\|CDD\|226451
CP026063.1\|AUU42606.1\|1623318_1625850_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
CP026063.1\|AUU42623.1\|1644490_1645435_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
CP026063.1\|AUU42607.1\|1625990_1627310_-\|ISL3-like-element-IS1181-family-transposase	unknown	unknown	gnl\|CDD\|225995
CP026063.1\|AUU42622.1\|1643384_1644380_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
CP026063.1\|AUU42614.1\|1633361_1636208_+\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
CP026063.1\|AUU42618.1\|1639149_1640589_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276808
CP026063.1\|AUU42624.1\|1645998_1646586_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
CP026063.1\|AUU42617.1\|1638656_1639142_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053
CP026063.1\|AUU42609.1\|1628948_1629056_+\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU42615.1\|1636871_1637804_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
CP026063.1\|AUU42608.1\|1627684_1628795_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
CP026063.1\|AUU42621.1\|1642476_1643388_+\|RNase-adaptor-protein-RapZ	unknown	unknown	gnl\|CDD\|224574
CP026063.1\|AUU42613.1\|1631368_1633354_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
CP026063.1\|AUU42619.1\|1640655_1641591_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540

Protein	Function_ID	Function_description	E-value
CP026063.1\|AUU42616.1\|1637809_1638649_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.75588e-120
CP026063.1\|AUU42605.1\|1622332_1622905_+\|ribosomal-subunit-interface-protein	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
CP026063.1\|AUU42611.1\|1630216_1630867_+\|HD-domain-containing-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP026063.1\|AUU42612.1\|1630863_1631100_+\|DUF2198-domain-containing-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
CP026063.1\|AUU42610.1\|1629203_1630043_+\|peptidase-M23	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.97111e-42
CP026063.1\|AUU42606.1\|1623318_1625850_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
CP026063.1\|AUU42623.1\|1644490_1645435_+\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP026063.1\|AUU42607.1\|1625990_1627310_-\|ISL3-like-element-IS1181-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.75686e-114
CP026063.1\|AUU42622.1\|1643384_1644380_+\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP026063.1\|AUU42614.1\|1633361_1636208_+\|excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP026063.1\|AUU42618.1\|1639149_1640589_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.14043e-06
CP026063.1\|AUU42624.1\|1645998_1646586_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP026063.1\|AUU42617.1\|1638656_1639142_+\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
CP026063.1\|AUU42621.1\|1642476_1643388_+\|RNase-adaptor-protein-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP026063.1\|AUU42615.1\|1636871_1637804_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP026063.1\|AUU42608.1\|1627684_1628795_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
CP026063.1\|AUU42613.1\|1631368_1633354_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP026063.1\|AUU42619.1\|1640655_1641591_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154

>CP026063.1|AUU42614.1|1633361_1636208_+|excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIDVPEYRRPASDRKISIRGARSNNLKGIDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP026063.1|AUU42613.1|1631368_1633354_+|excinuclease-ABC-subunit-UvrB
MVEHYPFKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP026063.1|AUU42612.1|1630863_1631100_+|DUF2198-domain-containing-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP026063.1|AUU42611.1|1630216_1630867_+|HD-domain-containing-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP026063.1|AUU42610.1|1629203_1630043_+|peptidase-M23
MKKTLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>CP026063.1|AUU42609.1|1628948_1629056_+|hypothetical-protein
MCLLKQHMQCAFSNITYGDFQGIELIVENVLNYMV
>CP026063.1|AUU42608.1|1627684_1628795_+|peptide-chain-release-factor-2
MELSEIKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>CP026063.1|AUU42607.1|1625990_1627310_-|ISL3-like-element-IS1181-family-transposase
MCNDTLELLRIKDENIKYINQEIDVIIKGKKATVVNAVLTYKPSACYCCGVKNEGQIHKHGKRVSRITLLKTQGYNTYLNLAKQRFKCLECNGTFTAKTSIVDESCFISRCVTQKVIEEATKVKTEIDTAEDNCISPSTVSRIRTKAANSLRIKPFNCLPEHIAMDEFKSVKNVTGSMSFIFIDNDTHDVIDILENRTTRFLRAYFERFDLKNRQQVKTVTIDMYEPYVRLFRDLFPNAAIIFDRFHIVQHLNRELNKYRVQVMNEYRNKKGPNYTIFKNNWKVLLMDTSKTIFSKYRWNKSFKAYKRSSDIVEFMLSKDDILRRSYELVQGLRKDLRLCNWPKFINRLNSVSKKSVSKGVWKVVKYYRKHQRMLRNTIYYPAFNNGAIEGINNKIKLIKRISFGYRNFNNFKARIMMIFSLYKGEKKKTTKPNNGLAA
>CP026063.1|AUU42606.1|1623318_1625850_+|preprotein-translocase-subunit-SecA
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>CP026063.1|AUU42605.1|1622332_1622905_+|ribosomal-subunit-interface-protein
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>CP026063.1|AUU42615.1|1636871_1637804_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP026063.1|AUU42616.1|1637809_1638649_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>CP026063.1|AUU42617.1|1638656_1639142_+|acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP026063.1|AUU42618.1|1639149_1640589_+|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP026063.1|AUU42619.1|1640655_1641591_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP026063.1|AUU42620.1|1641937_1642126_-|hypothetical-protein
MGPNTEKLDFQFLQTMQVGVWAPTKRISKRNSTGNASWGVGPNTEAYDKSAYDNVQVGVVQR
>CP026063.1|AUU42621.1|1642476_1643388_+|RNase-adaptor-protein-RapZ
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP026063.1|AUU42622.1|1643384_1644380_+|YvcK-family-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP026063.1|AUU42623.1|1644490_1645435_+|DNA-binding-protein-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP026063.1|AUU42624.1|1645998_1646586_+|ATP-dependent-Clp-protease-proteolytic-subunit
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK

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Crispr_ID: CP026063_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026063_8

1641990-1642259

Orphan

Consensus_repeat	Method
TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	CRT

4 spacers

The CRISPR arrays of CP026063_8

>merge|CP026063|8|1641990-1642259|CRT
GCTTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGAAATCCAATTTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGAAATCCAATTTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAA

>CP026063|8|1|1641990-1642259|CRT
GCTTCTGTGTTGGGGCCCACACCCCAACTCGCATTG	CCTGTAGAATTTCTTTTCGAAA
TTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTG	TCTGTAGAAATTGGAAATCCAAT
TTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTG	CCTGTAGAATTTCTTTTCGAAA
TTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTG	TCTGTAGAAATTGGAAATCCAAT
TTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP026063.1\|AUU42629.1\|1650885_1651896_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
CP026063.1\|AUU42630.1\|1652034_1653225_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
CP026063.1\|AUU42616.1\|1637809_1638649_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP026063.1\|AUU42619.1\|1640655_1641591_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP026063.1\|AUU42622.1\|1643384_1644380_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
CP026063.1\|AUU42611.1\|1630216_1630867_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|378993
CP026063.1\|AUU42610.1\|1629203_1630043_+\|peptidase-M23	unknown	unknown	gnl\|CDD\|226451
CP026063.1\|AUU42612.1\|1630863_1631100_+\|DUF2198-domain-containing-protein	unknown	unknown	gnl\|CDD\|227234
CP026063.1\|AUU42627.1\|1649314_1649497_+\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU42623.1\|1644490_1645435_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
CP026063.1\|AUU42624.1\|1645998_1646586_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
CP026063.1\|AUU42625.1\|1646828_1647731_-\|epimerase	unknown	unknown	gnl\|CDD\|224015
CP026063.1\|AUU42614.1\|1633361_1636208_+\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
CP026063.1\|AUU42618.1\|1639149_1640589_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276808
CP026063.1\|AUU42617.1\|1638656_1639142_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053
CP026063.1\|AUU42621.1\|1642476_1643388_+\|RNase-adaptor-protein-RapZ	unknown	unknown	gnl\|CDD\|224574
CP026063.1\|AUU42615.1\|1636871_1637804_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
CP026063.1\|AUU42626.1\|1648433_1649063_+\|DUF4887-domain-containing-protein	unknown	unknown	gnl\|CDD\|234750
CP026063.1\|AUU42613.1\|1631368_1633354_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
CP026063.1\|AUU42628.1\|1649819_1650833_+\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263

Protein	Function_ID	Function_description	E-value
CP026063.1\|AUU42629.1\|1650885_1651896_+\|aldehyde-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
CP026063.1\|AUU42630.1\|1652034_1653225_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
CP026063.1\|AUU42616.1\|1637809_1638649_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.75588e-120
CP026063.1\|AUU42619.1\|1640655_1641591_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP026063.1\|AUU42622.1\|1643384_1644380_+\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP026063.1\|AUU42611.1\|1630216_1630867_+\|HD-domain-containing-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP026063.1\|AUU42610.1\|1629203_1630043_+\|peptidase-M23	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.97111e-42
CP026063.1\|AUU42612.1\|1630863_1631100_+\|DUF2198-domain-containing-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
CP026063.1\|AUU42623.1\|1644490_1645435_+\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP026063.1\|AUU42624.1\|1645998_1646586_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP026063.1\|AUU42625.1\|1646828_1647731_-\|epimerase	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	6.73087e-155
CP026063.1\|AUU42614.1\|1633361_1636208_+\|excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP026063.1\|AUU42618.1\|1639149_1640589_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.14043e-06
CP026063.1\|AUU42617.1\|1638656_1639142_+\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
CP026063.1\|AUU42621.1\|1642476_1643388_+\|RNase-adaptor-protein-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP026063.1\|AUU42615.1\|1636871_1637804_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP026063.1\|AUU42626.1\|1648433_1649063_+\|DUF4887-domain-containing-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	5.80381e-05
CP026063.1\|AUU42613.1\|1631368_1633354_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP026063.1\|AUU42628.1\|1649819_1650833_+\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.39665e-92

>CP026063.1|AUU42619.1|1640655_1641591_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP026063.1|AUU42618.1|1639149_1640589_+|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP026063.1|AUU42617.1|1638656_1639142_+|acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP026063.1|AUU42616.1|1637809_1638649_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>CP026063.1|AUU42615.1|1636871_1637804_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP026063.1|AUU42614.1|1633361_1636208_+|excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIDVPEYRRPASDRKISIRGARSNNLKGIDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP026063.1|AUU42613.1|1631368_1633354_+|excinuclease-ABC-subunit-UvrB
MVEHYPFKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP026063.1|AUU42612.1|1630863_1631100_+|DUF2198-domain-containing-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP026063.1|AUU42611.1|1630216_1630867_+|HD-domain-containing-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP026063.1|AUU42610.1|1629203_1630043_+|peptidase-M23
MKKTLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>CP026063.1|AUU42621.1|1642476_1643388_+|RNase-adaptor-protein-RapZ
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP026063.1|AUU42622.1|1643384_1644380_+|YvcK-family-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP026063.1|AUU42623.1|1644490_1645435_+|DNA-binding-protein-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP026063.1|AUU42624.1|1645998_1646586_+|ATP-dependent-Clp-protease-proteolytic-subunit
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP026063.1|AUU42625.1|1646828_1647731_-|epimerase
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGMILSNEGGALQTMKLPYKYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE
>CP026063.1|AUU42626.1|1648433_1649063_+|DUF4887-domain-containing-protein
MSNQNYDYNKNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFAYVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQANQYQQLPQQNQYQYVPPQQQAPTKQRPAKEENDDKASKDESKDKDDNASQDKSDDNQKKTDDNKQPAQPKPQPQQPTPKPNNNQQNNQSNQQAKPQAPQQNSQSTTNKQNNANDK
>CP026063.1|AUU42627.1|1649314_1649497_+|hypothetical-protein
MGPRQLAHYCKLTFRQLLCWGPTPTCIACRNWKSNFSMLGPLTLIGKSLLQVHFRSVNYY
>CP026063.1|AUU42628.1|1649819_1650833_+|sugar-binding-transcriptional-regulator
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
>CP026063.1|AUU42629.1|1650885_1651896_+|aldehyde-dehydrogenase
MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
>CP026063.1|AUU42630.1|1652034_1653225_+|phosphoglycerate-kinase
MAKKIVSDLDLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK

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Crispr_ID: CP026063_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026063_9

1649304-1649383

Orphan

Consensus_repeat	Method
CAGCTTCTGTGTTGGGGCCCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026063_9

>merge|CP026063|9|1649304-1649383|CRISPRCasFinder
CAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCACC

>CP026063|9|8|1649304-1649383|CRISPRCasFinder
CAGCTTCTGTGTTGGGGCCCCGCC	AACTTGCACATTATTGTAAGCTGACTTTCCGC
CAGCTTCTGTGTTGGGGCCCCACC

Protein	Signature genes	Signature genes Name	Protein_function
CP026063.1\|AUU42629.1\|1650885_1651896_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
CP026063.1\|AUU42620.1\|1641937_1642126_-\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU42633.1\|1655757_1657062_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP026063.1\|AUU42636.1\|1658274_1659015_+\|carboxylesterase	unknown	unknown	gnl\|CDD\|224561
CP026063.1\|AUU42619.1\|1640655_1641591_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP026063.1\|AUU42622.1\|1643384_1644380_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
CP026063.1\|AUU42625.1\|1646828_1647731_-\|epimerase	unknown	unknown	gnl\|CDD\|224015
CP026063.1\|AUU42632.1\|1654110_1655628_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
CP026063.1\|AUU42626.1\|1648433_1649063_+\|DUF4887-domain-containing-protein	unknown	unknown	gnl\|CDD\|234750
CP026063.1\|AUU42623.1\|1644490_1645435_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
CP026063.1\|AUU42630.1\|1652034_1653225_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
CP026063.1\|AUU42618.1\|1639149_1640589_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276808
CP026063.1\|AUU42634.1\|1657400_1657859_+\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU42617.1\|1638656_1639142_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053
CP026063.1\|AUU42631.1\|1653346_1654108_+\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
CP026063.1\|AUU42621.1\|1642476_1643388_+\|RNase-adaptor-protein-RapZ	unknown	unknown	gnl\|CDD\|224574
CP026063.1\|AUU42637.1\|1659048_1661421_+\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
CP026063.1\|AUU42624.1\|1645998_1646586_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
CP026063.1\|AUU42635.1\|1657925_1658159_+\|protein-export-membrane-protein-SecG	unknown	unknown	gnl\|CDD\|224233
CP026063.1\|AUU42628.1\|1649819_1650833_+\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263

Protein	Function_ID	Function_description	E-value
CP026063.1\|AUU42629.1\|1650885_1651896_+\|aldehyde-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
CP026063.1\|AUU42632.1\|1654110_1655628_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
CP026063.1\|AUU42633.1\|1655757_1657062_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP026063.1\|AUU42636.1\|1658274_1659015_+\|carboxylesterase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	1.30175e-132
CP026063.1\|AUU42619.1\|1640655_1641591_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP026063.1\|AUU42622.1\|1643384_1644380_+\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP026063.1\|AUU42625.1\|1646828_1647731_-\|epimerase	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	6.73087e-155
CP026063.1\|AUU42626.1\|1648433_1649063_+\|DUF4887-domain-containing-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	5.80381e-05
CP026063.1\|AUU42623.1\|1644490_1645435_+\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP026063.1\|AUU42630.1\|1652034_1653225_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
CP026063.1\|AUU42618.1\|1639149_1640589_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.14043e-06
CP026063.1\|AUU42637.1\|1659048_1661421_+\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
CP026063.1\|AUU42617.1\|1638656_1639142_+\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
CP026063.1\|AUU42631.1\|1653346_1654108_+\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.84083e-146
CP026063.1\|AUU42621.1\|1642476_1643388_+\|RNase-adaptor-protein-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP026063.1\|AUU42624.1\|1645998_1646586_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP026063.1\|AUU42635.1\|1657925_1658159_+\|protein-export-membrane-protein-SecG	gnl\|CDD\|224233	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion].	6.41939e-15
CP026063.1\|AUU42628.1\|1649819_1650833_+\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.39665e-92

>CP026063.1|AUU42626.1|1648433_1649063_+|DUF4887-domain-containing-protein
MSNQNYDYNKNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFAYVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQANQYQQLPQQNQYQYVPPQQQAPTKQRPAKEENDDKASKDESKDKDDNASQDKSDDNQKKTDDNKQPAQPKPQPQQPTPKPNNNQQNNQSNQQAKPQAPQQNSQSTTNKQNNANDK
>CP026063.1|AUU42625.1|1646828_1647731_-|epimerase
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGMILSNEGGALQTMKLPYKYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE
>CP026063.1|AUU42624.1|1645998_1646586_+|ATP-dependent-Clp-protease-proteolytic-subunit
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP026063.1|AUU42623.1|1644490_1645435_+|DNA-binding-protein-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP026063.1|AUU42622.1|1643384_1644380_+|YvcK-family-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP026063.1|AUU42621.1|1642476_1643388_+|RNase-adaptor-protein-RapZ
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP026063.1|AUU42620.1|1641937_1642126_-|hypothetical-protein
MGPNTEKLDFQFLQTMQVGVWAPTKRISKRNSTGNASWGVGPNTEAYDKSAYDNVQVGVVQR
>CP026063.1|AUU42619.1|1640655_1641591_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP026063.1|AUU42618.1|1639149_1640589_+|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP026063.1|AUU42617.1|1638656_1639142_+|acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP026063.1|AUU42628.1|1649819_1650833_+|sugar-binding-transcriptional-regulator
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
>CP026063.1|AUU42629.1|1650885_1651896_+|aldehyde-dehydrogenase
MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
>CP026063.1|AUU42630.1|1652034_1653225_+|phosphoglycerate-kinase
MAKKIVSDLDLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK
>CP026063.1|AUU42631.1|1653346_1654108_+|triose-phosphate-isomerase
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK
>CP026063.1|AUU42632.1|1654110_1655628_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MAKKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH
>CP026063.1|AUU42633.1|1655757_1657062_+|enolase
MPIITDVYAREVLDSRGNPTVEVEVLTESGAFGRALVPSGASTGEHEAVELRDGDKSRYLGKGVTKAVENVNEIIAPEIIEGEFSVLDQVSIDKMMIALDGTPNKGKLGANAILGVSIAVARAAADLLGQPLYKYLGGFNGKQLPVPMMNIVNGGSHSDAPIAFQEFMILPVGATTFKESLRWGTEIFHNLKSILSKRGLETAVGDEGGFAPKFEGTEDAVETIIQAIEAAGYKPGEEVFLGFDCASSEFYENGVYDYSKFEGEHGAKRTAAEQVDYLEQLVDKYPIITIEDGMDENDWDGWKQLTERIGDRVQLVGDDLFVTNTEILAKGIENGIGNSILIKVNQIGTLTETFDAIEMAQKAGYTAVVSHRSGETEDTTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDELFETAKYDGIKSFYNLDK
>CP026063.1|AUU42634.1|1657400_1657859_+|hypothetical-protein
MADRTNKEIKTGRFIATASIVFSILLIIHYFVSLDNATAKALLNLTNQNTSDKAIDYILNSFRFTGIMYILAYLAGFITFWNRHTYVWWFMFAVYVSNSLFTLINLSITIQAIKAAHGAYLTLPILIVIIGSVALAIYMLVVSIKRKSTFNR
>CP026063.1|AUU42635.1|1657925_1658159_+|protein-export-membrane-protein-SecG
MHTFLIVLLIIDCIALITVVLLQEGKSSGLSGAISGGAEQLFGKQKQRGVDLFLNRLTIILSILFFVLMICISYLGM
>CP026063.1|AUU42636.1|1658274_1659015_+|carboxylesterase
MQIKLPKPFFFEEGKRAVLLLHGFTGNSSDVRQLGRFLQKKGYTSYAPQYEGHAAPPEEILKSSPFVWFKDALDGYDYLVEQGYDEIVVAGLSLGGDFALKLSLNRDVKGIVTMCAPMGGKTEGAIYEGFLEYARNFKKYEGKNQETIDNEMDHFKPTETLKELSEALDTIKDQVDEVFDPILVIQVENDNMIDPQSANYIYDHVDSDDKDIKWYSQSGHVITIDKEKEQVFEDIYQFLESLDWSE
>CP026063.1|AUU42637.1|1659048_1661421_+|ribonuclease-R
MNLKQSIEEIINQPEYEPMSVSDFQDALGLSSADSFRDLIKVLVELEQSGLIERTKTDRYQKKHSSKGHSKLIKGTLSQNKKGFAFLRPEDEDMEDIFIPPTKINRALDGDTVIVEIHQSKGEHKGKIEGEVKSIEKHSVTQVVGTYSEARHFGFVIPDDKRIMQDIFIPKGQSLGAVDGHKVLVQITKYADGSDNPEGHISAILGHKNDPGVDILSIIYQHGIEIEFPDEVLQEAEAVPDHIENTEIKGRHDLRDELTITIDGADAKDLDDAISVKKLANGNTQLTVSIADVSYYVTEDSALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPHVDRLTLSCRMEIDASGRVVKHEIFDSVIHSDYRMTYDAVNQIITEKDPNIREQYKEITPMLDLAQDLSNRLIQMRKRRGEIDFDISEAKVLVNEVGIPTDVQLRQRGEGERLIESFMLIANETVAEHFSKLNVPFIYRVHEQPKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQKVQEEVEGRPEQMVISTMMLRSMQQAHYDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIEKSMDNKEVKRWEDKLPELAEHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHIANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDERLIDFQIVGMPLPKNDRSQRPARGKTIQAKTRGKSLDKSKSDDKGRKKKGKQRKGKNQRNNDKSGNSKHKPFYKDKSVKKKARRKKK

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Crispr_ID: CP026063_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026063_10

1685470-1685551

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026063_10

>merge|CP026063|10|1685470-1685551|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGAGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>CP026063|10|9|1685470-1685551|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP026063.1\|AUU42671.1\|1687086_1688112_+\|methionine-import-ATP-binding-protein-MetN-2	unknown	unknown	gnl\|CDD\|224058
CP026063.1\|AUU42661.1\|1681461_1682178_+\|3-dehydroquinase	unknown	unknown	gnl\|CDD\|184156
CP026063.1\|AUU42672.1\|1688104_1688800_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
CP026063.1\|AUU42660.1\|1680891_1681314_-\|organic-hydroperoxide-reductase-OsmC/OhrA	unknown	unknown	gnl\|CDD\|274649
CP026063.1\|AUU42667.1\|1684487_1685366_+\|DUF1963-domain-containing-protein	unknown	unknown	gnl\|CDD\|226395
CP026063.1\|AUU42662.1\|1682260_1682800_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
CP026063.1\|AUU42677.1\|1692458_1693766_+\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
CP026063.1\|AUU42674.1\|1689992_1690187_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
CP026063.1\|AUU42668.1\|1685838_1685952_+\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU42666.1\|1684372_1684486_+\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU42664.1\|1683414_1683771_+\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239334
CP026063.1\|AUU42663.1\|1682950_1683271_-\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP026063.1\|AUU42669.1\|1686161_1686548_+\|topiosmerase	unknown	unknown	gnl\|CDD\|224572
CP026063.1\|AUU42675.1\|1690420_1691272_-\|DUF368-domain-containing-protein	unknown	unknown	gnl\|CDD\|224946
CP026063.1\|AUU42665.1\|1683928_1684309_+\|glycine-cleavage-system-protein-H	unknown	unknown	gnl\|CDD\|234918
CP026063.1\|AUU42659.1\|1679998_1680493_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|372596
CP026063.1\|AUU42673.1\|1688817_1689639_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
CP026063.1\|AUU42670.1\|1686540_1686837_+\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP026063.1\|AUU42658.1\|1679226_1679844_-\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
CP026063.1\|AUU42676.1\|1691599_1692361_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473

Protein	Function_ID	Function_description	E-value
CP026063.1\|AUU42671.1\|1687086_1688112_+\|methionine-import-ATP-binding-protein-MetN-2	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	2.03316e-170
CP026063.1\|AUU42661.1\|1681461_1682178_+\|3-dehydroquinase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	3.2619e-146
CP026063.1\|AUU42660.1\|1680891_1681314_-\|organic-hydroperoxide-reductase-OsmC/OhrA	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
CP026063.1\|AUU42667.1\|1684487_1685366_+\|DUF1963-domain-containing-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	3.13065e-77
CP026063.1\|AUU42662.1\|1682260_1682800_+\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
CP026063.1\|AUU42677.1\|1692458_1693766_+\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	3.36148e-135
CP026063.1\|AUU42674.1\|1689992_1690187_+\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
CP026063.1\|AUU42664.1\|1683414_1683771_+\|arsenate-reductase-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
CP026063.1\|AUU42672.1\|1688104_1688800_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	7.66296e-99
CP026063.1\|AUU42663.1\|1682950_1683271_-\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.4922e-24
CP026063.1\|AUU42669.1\|1686161_1686548_+\|topiosmerase	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36
CP026063.1\|AUU42675.1\|1690420_1691272_-\|DUF368-domain-containing-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	7.67366e-77
CP026063.1\|AUU42665.1\|1683928_1684309_+\|glycine-cleavage-system-protein-H	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.01516e-70
CP026063.1\|AUU42659.1\|1679998_1680493_-\|N-acetyltransferase	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
CP026063.1\|AUU42673.1\|1688817_1689639_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.02861e-112
CP026063.1\|AUU42670.1\|1686540_1686837_+\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
CP026063.1\|AUU42658.1\|1679226_1679844_-\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	2.60719e-61
CP026063.1\|AUU42676.1\|1691599_1692361_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150

>CP026063.1|AUU42667.1|1684487_1685366_+|DUF1963-domain-containing-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLSQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLNDLPEQQELFPVNEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQVHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>CP026063.1|AUU42666.1|1684372_1684486_+|hypothetical-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGS
>CP026063.1|AUU42665.1|1683928_1684309_+|glycine-cleavage-system-protein-H
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE
>CP026063.1|AUU42664.1|1683414_1683771_+|arsenate-reductase-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>CP026063.1|AUU42663.1|1682950_1683271_-|thioredoxin
MQAIKSNESFKSIINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>CP026063.1|AUU42662.1|1682260_1682800_+|nitroreductase
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>CP026063.1|AUU42661.1|1681461_1682178_+|3-dehydroquinase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFINDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIIKHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>CP026063.1|AUU42660.1|1680891_1681314_-|organic-hydroperoxide-reductase-OsmC/OhrA
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>CP026063.1|AUU42659.1|1679998_1680493_-|N-acetyltransferase
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>CP026063.1|AUU42658.1|1679226_1679844_-|amino-acid-transporter
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIISPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF
>CP026063.1|AUU42668.1|1685838_1685952_+|hypothetical-protein
MLGPRQLAHYCKLTYHQLLCWGPAIIEKFVIGVFSFG
>CP026063.1|AUU42669.1|1686161_1686548_+|topiosmerase
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>CP026063.1|AUU42670.1|1686540_1686837_+|thioredoxin
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>CP026063.1|AUU42671.1|1687086_1688112_+|methionine-import-ATP-binding-protein-MetN-2
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEHGPVTQVFENPQHTVTKRFVKEDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>CP026063.1|AUU42672.1|1688104_1688800_+|ABC-transporter-permease
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWIVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>CP026063.1|AUU42673.1|1688817_1689639_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYDLDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>CP026063.1|AUU42674.1|1689992_1690187_+|CsbD-family-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>CP026063.1|AUU42675.1|1690420_1691272_-|DUF368-domain-containing-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTGLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFTGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>CP026063.1|AUU42676.1|1691599_1692361_+|Fe-S-cluster-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>CP026063.1|AUU42677.1|1692458_1693766_+|Fe-S-cluster-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKHFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKNASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK

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Crispr_ID: CP026063_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026063_11

2473770-2473854

Orphan

Consensus_repeat	Method
CACCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026063_11

>merge|CP026063|11|2473770-2473854|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGCCTGTAGAA

>CP026063|11|10|2473770-2473854|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA
CACCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP026063.1\|AUU43426.1\|2481726_2482080_-\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
CP026063.1\|AUU43419.1\|2474026_2475850_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
CP026063.1\|AUU43421.1\|2476491_2477466_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
CP026063.1\|AUU43427.1\|2482080_2482665_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627
CP026063.1\|AUU43414.1\|2466482_2467421_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
CP026063.1\|AUU43415.1\|2467424_2468564_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237656
CP026063.1\|AUU43417.1\|2470600_2471227_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237622
CP026063.1\|AUU43411.1\|2463906_2464083_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP026063.1\|AUU43416.1\|2468699_2470532_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
CP026063.1\|AUU43428.1\|2482654_2483224_-\|nicotinate-nicotinamide-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|273101
CP026063.1\|AUU43777.1\|2462979_2463663_-\|serine-protease	unknown	unknown	gnl\|CDD\|223961
CP026063.1\|AUU43420.1\|2476195_2476447_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
CP026063.1\|AUU43424.1\|2480281_2480968_-\|competence-protein-ComE	unknown	unknown	gnl\|CDD\|224472
CP026063.1\|AUU43418.1\|2471258_2472236_-\|HrcA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273017
CP026063.1\|AUU43412.1\|2464375_2465722_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
CP026063.1\|AUU43778.1\|2472336_2473461_-\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
CP026063.1\|AUU43413.1\|2465728_2466481_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|224303
CP026063.1\|AUU43422.1\|2477522_2479670_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|225212
CP026063.1\|AUU43425.1\|2481007_2481724_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
CP026063.1\|AUU43423.1\|2479728_2480190_-\|ComE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622

Protein	Function_ID	Function_description	E-value
CP026063.1\|AUU43426.1\|2481726_2482080_-\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.95861e-47
CP026063.1\|AUU43419.1\|2474026_2475850_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
CP026063.1\|AUU43421.1\|2476491_2477466_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	4.1415e-104
CP026063.1\|AUU43427.1\|2482080_2482665_-\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	2.21948e-80
CP026063.1\|AUU43414.1\|2466482_2467421_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	9.7051e-134
CP026063.1\|AUU43415.1\|2467424_2468564_-\|molecular-chaperone-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
CP026063.1\|AUU43417.1\|2470600_2471227_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	3.74407e-81
CP026063.1\|AUU43411.1\|2463906_2464083_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10
CP026063.1\|AUU43416.1\|2468699_2470532_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
CP026063.1\|AUU43428.1\|2482654_2483224_-\|nicotinate-nicotinamide-nucleotide-adenylyltransferase	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	2.64141e-76
CP026063.1\|AUU43777.1\|2462979_2463663_-\|serine-protease	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	8.78003e-63
CP026063.1\|AUU43420.1\|2476195_2476447_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17
CP026063.1\|AUU43424.1\|2480281_2480968_-\|competence-protein-ComE	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	1.06297e-33
CP026063.1\|AUU43418.1\|2471258_2472236_-\|HrcA-family-transcriptional-regulator	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	2.05887e-119
CP026063.1\|AUU43412.1\|2464375_2465722_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
CP026063.1\|AUU43778.1\|2472336_2473461_-\|coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
CP026063.1\|AUU43413.1\|2465728_2466481_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.90273e-91
CP026063.1\|AUU43422.1\|2477522_2479670_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	1.49563e-90
CP026063.1\|AUU43425.1\|2481007_2481724_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	7.79783e-16
CP026063.1\|AUU43423.1\|2479728_2480190_-\|ComE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	4.81051e-102

>CP026063.1|AUU43778.1|2472336_2473461_-|coproporphyrinogen-III-oxidase
MTVQSAYIHIPFCVRICTYCDFNKYFIQNQPVDEYLDALITEMSTAKYRNLKTMYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLLMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFGQTINNLKEKELIVEKNDAIALTKRGKVIGNEVFEAFLIND
>CP026063.1|AUU43418.1|2471258_2472236_-|HrcA-family-transcriptional-regulator
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>CP026063.1|AUU43417.1|2470600_2471227_-|nucleotide-exchange-factor-GrpE
MTNKDESVEKNTESTVEETNIKQNIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>CP026063.1|AUU43416.1|2468699_2470532_-|molecular-chaperone-DnaK
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>CP026063.1|AUU43415.1|2467424_2468564_-|molecular-chaperone-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>CP026063.1|AUU43414.1|2466482_2467421_-|50S-ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDELDQHNIQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>CP026063.1|AUU43413.1|2465728_2466481_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVVKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSAISYEKELMG
>CP026063.1|AUU43412.1|2464375_2465722_-|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>CP026063.1|AUU43411.1|2463906_2464083_-|30S-ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>CP026063.1|AUU43777.1|2462979_2463663_-|serine-protease
MTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGMILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD
>CP026063.1|AUU43419.1|2474026_2475850_-|elongation-factor-4
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELLPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>CP026063.1|AUU43420.1|2476195_2476447_+|30S-ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>CP026063.1|AUU43421.1|2476491_2477466_-|DNA-polymerase-III-subunit-delta
MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIVDACAETDYKLKSSYMDKQLILELFILSL
>CP026063.1|AUU43422.1|2477522_2479670_-|DNA-internalization-related-competence-protein-ComEC/Rec2
MLSTFLFILLLYITYRKNKIVYAPISLFLIIFSSWYLHYSQQAIFNYINYIERNSQFNERAQVIQIQRQGSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNENKFVTLKLQSIVVQSCLESNRSNLIEKHKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGITIIVLTLYAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIIFIISVYYIFWLLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSSNTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSNSYGNASGL
>CP026063.1|AUU43423.1|2479728_2480190_-|ComE-operon-protein-2
MERIKWEEYFMAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>CP026063.1|AUU43424.1|2480281_2480968_-|competence-protein-ComE
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI
>CP026063.1|AUU43425.1|2481007_2481724_-|class-I-SAM-dependent-methyltransferase
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESNILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDTERLFFIAKK
>CP026063.1|AUU43426.1|2481726_2482080_-|ribosome-silencing-factor
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>CP026063.1|AUU43427.1|2482080_2482665_-|HD-domain-containing-protein
MNIEKAKRLAKEKLPEKRYNHSLRVAETAIKLAEIYDGDTSKVELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>CP026063.1|AUU43428.1|2482654_2483224_-|nicotinate-nicotinamide-nucleotide-adenylyltransferase
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHNNFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH

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Crispr_ID: CP026063_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026063_12

2508245-2508325

Orphan

Consensus_repeat	Method
AATTTCTCTATGTTGGGGCCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026063_12

>merge|CP026063|12|2508245-2508325|CRISPRCasFinder
AATTTCTCTATGTTGGGGCCCCGTCCCCAACTTCCATTGCCTGTAGAATTTCTTTACGAAATTCTCTATGTTGGGGCCCCG

>CP026063|12|11|2508245-2508325|CRISPRCasFinder
AATTTCTCTATGTTGGGGCCCCG	TCCCCAACTTCCATTGCCTGTAGAATTTCTTTACG
AAATTCTCTATGTTGGGGCCCCG

Protein	Signature genes	Signature genes Name	Protein_function
CP026063.1\|AUU43463.1\|2515464_2515593_-\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU43464.1\|2515925_2517692_-\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
CP026063.1\|AUU43458.1\|2512281_2512428_-\|hypothetical-protein	unknown	unknown	unknown
CP026063.1\|AUU43457.1\|2511031_2512045_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
CP026063.1\|AUU43453.1\|2504672_2507150_-\|ATP-dependent-RecD-like-DNA-helicase	unknown	unknown	gnl\|CDD\|273632
CP026063.1\|AUU43447.1\|2498772_2499696_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
CP026063.1\|AUU43450.1\|2500944_2501373_-\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|223886
CP026063.1\|AUU43445.1\|2496869_2497493_-\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
CP026063.1\|AUU43446.1\|2497492_2498761_-\|collagenase-like-protease	unknown	unknown	gnl\|CDD\|223896
CP026063.1\|AUU43456.1\|2509577_2510720_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
CP026063.1\|AUU43451.1\|2501376_2501637_-\|IreB-family-regulatory-phosphoprotein	unknown	unknown	gnl\|CDD\|180108
CP026063.1\|AUU43449.1\|2500621_2500930_-\|DUF1292-domain-containing-protein	unknown	unknown	gnl\|CDD\|184235
CP026063.1\|AUU43461.1\|2513256_2514531_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
CP026063.1\|AUU43454.1\|2507151_2507820_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
CP026063.1\|AUU43462.1\|2514691_2515465_-\|tRNA-threonylcarbamoyladenosine-dehydratase	unknown	unknown	gnl\|CDD\|224100
CP026063.1\|AUU43448.1\|2499698_2500337_-\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
CP026063.1\|AUU43452.1\|2501699_2504330_-\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
CP026063.1\|AUU43460.1\|2512749_2513172_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
CP026063.1\|AUU43455.1\|2508458_2509577_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
CP026063.1\|AUU43459.1\|2512467_2512650_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777

Protein	Function_ID	Function_description	E-value
CP026063.1\|AUU43464.1\|2515925_2517692_-\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
CP026063.1\|AUU43457.1\|2511031_2512045_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	1.35642e-173
CP026063.1\|AUU43453.1\|2504672_2507150_-\|ATP-dependent-RecD-like-DNA-helicase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0
CP026063.1\|AUU43447.1\|2498772_2499696_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	7.60817e-104
CP026063.1\|AUU43450.1\|2500944_2501373_-\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|223886	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair].	3.40149e-56
CP026063.1\|AUU43445.1\|2496869_2497493_-\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	5.13835e-138
CP026063.1\|AUU43446.1\|2497492_2498761_-\|collagenase-like-protease	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	5.98972e-149
CP026063.1\|AUU43456.1\|2509577_2510720_-\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	0
CP026063.1\|AUU43451.1\|2501376_2501637_-\|IreB-family-regulatory-phosphoprotein	gnl\|CDD\|180108	PRK05473, IreB-like, IreB family regulatory phosphoprotein. IreB (EF1202) was characterized in Enterococcus faecalis as a small protein, well-conserved in the Firmicutes. It belongs to a system that includes the Ser/Thr protein kinase IreK, and phosphatase IreP, undergoes phosphorylation on threonine residues, and is involved in regulating cephalosporin resistance. This family was previously named DUF965 by Pfam model pfam06135.	3.05024e-47
CP026063.1\|AUU43449.1\|2500621_2500930_-\|DUF1292-domain-containing-protein	gnl\|CDD\|184235	PRK13678, PRK13678, hypothetical protein; Provisional.	1.28539e-26
CP026063.1\|AUU43461.1\|2513256_2514531_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
CP026063.1\|AUU43454.1\|2507151_2507820_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	4.6095e-16
CP026063.1\|AUU43462.1\|2514691_2515465_-\|tRNA-threonylcarbamoyladenosine-dehydratase	gnl\|CDD\|224100	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism].	1.59061e-126
CP026063.1\|AUU43448.1\|2499698_2500337_-\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	5.53366e-74
CP026063.1\|AUU43452.1\|2501699_2504330_-\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
CP026063.1\|AUU43460.1\|2512749_2513172_-\|transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	5.58388e-46
CP026063.1\|AUU43455.1\|2508458_2509577_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
CP026063.1\|AUU43459.1\|2512467_2512650_-\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	4.22501e-07

>CP026063.1|AUU43454.1|2507151_2507820_-|tetratricopeptide-repeat-protein
MIDQQTIYQYIQNGKIEEALQALFGNIEEDPTIIENYINAGIVLADANEIEKAERFFQKALTIDPKNGVVFYNLANVYYNQQRYQEAIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKLALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQLKHVLTIDKNHVDARYNLGLALFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE
>CP026063.1|AUU43453.1|2504672_2507150_-|ATP-dependent-RecD-like-DNA-helicase
MSDPTLFDYSMIKGTVEAILFQNSDNFYTVLKVDTIETNEDFDTMPTVVGFLPNIVEGDVYTFKGQVVDHPRYGKQLKAETFEKEMPQTKEAIISYLSSDLFKGVGKKTAQNIVNTLGDNAINDILDDHSVLEKVSGLSKKKQKQIAEQISANQESEKIMIRLHDLGFGPKLSMAIYQFYLGDTLTILDRNPYQLIYDIKGIGFNKADQLARNIGIAYNDNERLKAALLYTLEEECIKQGHTYLPINVVIDLTVDVLNYQDEEVIEPEKLDEMLQYLNEEKRLIIDNEQVAIPSLYYSEIKSVQNLFRIKTHTNKLTEIEQSDLQMHIGEIEDANQVNYAASQKEALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYVNDDYPVVLAAPTGRASKRLQESTGLEAMTIHRLIGWNQDTKPEDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQLIFVGDEDQLPSVGPGQVFKDLIESKAIPRVNLTEVYRQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQANQIPTVVEKVVTSAVNKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFWAKENALNKDVLVVDFEGNEITFTKQDMMELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKTSLVLLGDPEAFDIGLKTNGQARLTQLCTLLKNYFNSEDEEMLENTATNDTGASQTTIDDQVEAPMSSNDSGEVTSDSTKTDINVLTEATMFKIDPMINMGEITPYDFIER
>CP026063.1|AUU43452.1|2501699_2504330_-|alanine--tRNA-ligase
MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNSQKAIRTNDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRIEGNFWDIGEGPSGPNTEIFYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLKVDMTTFESEMQQQRDRARQARQNSQSMQVQSEVLKNITSASTFVGYDTATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAPFSIELCGGIHVRNTSEIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVVEKLTQLQDEEKALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIVGGKGGGRPDMAQGGGTQPENISKSLSFIKDYIKNL
>CP026063.1|AUU43451.1|2501376_2501637_-|IreB-family-regulatory-phosphoprotein
MENFDKTMKFDYEELPTQDVRDVLNNVYRTLDERGYNAVNQIVGYLLSGDPAYIPRQNEARNQIRHIDRDVIMEELVSYYLKEQNK
>CP026063.1|AUU43450.1|2500944_2501373_-|Holliday-junction-resolvase-RuvX
MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH
>CP026063.1|AUU43449.1|2500621_2500930_-|DUF1292-domain-containing-protein
MTEHNHDSQLEINNEEELLTLFDEEGNEVLYRKVLEFYHPEFKKEYVILAEEGAQSDEDDMIELVPMINEPDESGDGGKLVPIETDEEWDMIEEVVNTEMEE
>CP026063.1|AUU43448.1|2499698_2500337_-|O-methyltransferase
MDDLNKKYLIDLHQHQNSSIEVLREFAEGNEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKGE
>CP026063.1|AUU43447.1|2498772_2499696_-|U32-family-peptidase
MTELLVTPKSLSHMETLIDLGADAFVIGEQKFGLRLPGEFNRQQMTEAVALAHKNDKKVYAAVNGLFHNYHLDAVEDYINFLHEIRVDRIIFGDPAVVMYVKAQENPIPLHWNAETLVTNHFQCNYWGKRGASRAVLARELNLDEIINIKENSNVEIEVQVQGMTCMFQSKRMLLGNYYTFQDRQMKIERRNDEQSLLLYDEERQNNYPVYEDYNGTHIMSPNDICLIEELAPFFEAGIDSFKIDGILQTEEYINVVTEQYRQAIDLYNEDPEIYEDEKFMLIDPIEEIQPDHRPFDEGFLYKQTVY
>CP026063.1|AUU43446.1|2497492_2498761_-|collagenase-like-protease
MKTIEEIKSTPKTVMKKPELLAPAGNLEKLKIAVHYGADAVFLGGQEYGLRSNADNFTMEEIAEGVEFANRYGAKIYVTTNIIAHDENIEGLESYLRNLEKTGATGIIVADPLIIETCKEVAPKLEIHLSTQQSLSNYKAVEYWKEEGLDRVVLARETGAMEMREMKEKVDIEIEAFIHGAMCIAYSGRCTLSNHMTARDSNRGGCCQSCRWDYELLEVDDNGELDVFYNQGEVTPFAMSPKDLKLIESIPQMMDIGVDSLKIEGRMKSIHYIATVVSVYRKVIDAYAADPDNFKINPEWLIELDKCANRDTAPAFFEGTPGYEEQMFGQQQSKKSPFDFCGLVLDYNEDTKIATIQQRNNFKPGQEIEFFGPEIETFTQVVEAIYDEEGNSLDAARHPLQIVQIKVDRPIYPNNMMRKEIG
>CP026063.1|AUU43445.1|2496869_2497493_-|uridine-kinase
MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ
>CP026063.1|AUU43455.1|2508458_2509577_-|tRNA-2-thiouridine(34)-synthase-MnmA
MSNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCTATEDYNDVIEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGADYVATGHYARIHRHEDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLPAQPGDMITLDGKKMGKHSGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGDVCLGGATIDDVFKNEGQLNYVV
>CP026063.1|AUU43456.1|2509577_2510720_-|cysteine-desulfurase
MEIYADYAATTPVKPEVVDAMMMIYNSHYGNPSSIHAKGRDARKYLDESRRQIAQLLGADTHEIIFTSGATESNNTAIKGIVKANEQLGNHIITSKIEHHSVLHVFEQLEREGFDVTYLDVDDTGAIDLDQLEETITDKTILVSIMFVNNEVGTVQQIYDIQDIIAETNAYFHVDAVQAIGHLDVKFDEFEIDAMSITAHKFGGPKGVGALLVKDHVTLDYPQLGGEQELKRRAGTENLAQIVGMAKALQLAEKNRDDNNIHLMNLKEQFLVKLQERAIPFELNGSMTDATGHIVNLYFPFVEVEMMLTLLDMAQIYVSSGSACTAGSTQPSHVLDAMFEDEERSNHSIRFSFNELTTENEINAIVAEIHKIYFKFKEES
>CP026063.1|AUU43457.1|2511031_2512045_+|LLM-class-flavin-dependent-oxidoreductase
MAIKYSALNLVPIREGDDERTAINDMVKLAQHLDELSYERYWIAEHHNAPNLVSSATALLIQHTLEHTKHIRVGSGGIMLPNHAPLIVAEQFGTMATLFPNRVDLGLGRAPGTDMMTASALRRDQHDGVYKFPEEVSLLQQYFGPAHQQAYVRAYPAVGKNVPLYILGSSTDSAHLAARKGLPYVFAGHFAPQQMKEAIEIYKTLFEPSDVLDEPYVIVCLNTIVAENDDEAQYLASSMAQVMVSITRGRMQPVQPPTHDLQNILTPREYAMAMERQKISLIGSENTVQQKIQDFMETYGEVNEIMAISYIYDKDMQLDSYRRFKNVINQINEKNTL
>CP026063.1|AUU43458.1|2512281_2512428_-|hypothetical-protein
MSFMDKAKDAVEKFKNSDNEQVKNVKDKINEYTGSNNEEKKENEDKEK
>CP026063.1|AUU43459.1|2512467_2512650_-|CsbD-family-protein
MADESKFDQFKGNVKETVGNVTDNKELEKEGQQDKATGKAKEVVENAKNKITDAIDKLKK
>CP026063.1|AUU43460.1|2512749_2513172_-|transcriptional-regulator
MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPPAQKQLWIRMRDAVRDVLDNTTLKYLAEYVDTSEDLDGYMFYI
>CP026063.1|AUU43461.1|2513256_2514531_+|replication-associated-recombination-protein-A
MSTEPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSEQQLKEIYNNLLKQRP
>CP026063.1|AUU43462.1|2514691_2515465_-|tRNA-threonylcarbamoyladenosine-dehydratase
MKHQFSRNELAIGQQGLDLLKQQTVVILGVGGVGSFAAEALARTNIGHIILIDKDDVDITNVNRQLHALTTTVGQSKVSLMEERIKLINPDCKVTPLHMFYTEETYEEIFDNYDIDYFVDASDTIMYKVHLMKECLDRGIKVISSMGAANKTDPTRFTISDISKTHTDPMAKIIRQKLKKLGIRKGIPVVFSDESPIVIREDVKDIVGDKNAINRKGQMPPSSNAFVPSVVGLICASYVVNDVLKDIPVRRIKDKGQ
>CP026063.1|AUU43463.1|2515464_2515593_-|hypothetical-protein
MGFIAFNKCFLVEFWENNQSDNAKYKILSYYVLMYKSVKEVK
>CP026063.1|AUU43464.1|2515925_2517692_-|aspartate--tRNA-ligase
MSKRTTYCGLVTEAFLGQEITLKGWVNNRRDLGGLIFVDLRDREGIVQVVFNPAFSEEALKIAETVRSEYVVEVQGTVTKRDPETVNPKIKTGQVEVQVTNIKVINKSETPPFSINEENVNVDENIRLKYRYLDLRRQELAQTFKMRHQITRSIRQYLDDEGFFDIETPVLTKSTPEGARDYLVPSRVHDGEFYALPQSPQLFKQLLMISGFDKYYQIVKCFRDEDLRADRQPEFTQVDIEMSFVDQEDVMQMGEEMLKKVVKEVKGVEINGAFPRMTYKEAMRRYGSDKPDTRFEMELIDVSQLGRDMDFKVFKDTVENDGEIKAIVAKGAAEQYTRKDMDALTEFVNIYGAKGLAWVKVVEDGLTGPIGRFFETENVETLLTLTGAEAGDLVMFVADKPNVVAQSLGALRVKLAKELGLIDETKLNFLWVTDWPLLEYDEDAKRYVAAHHPFTSPKEADIAKLGTAPEEAEANAYDIVLNGYELGGGSIRIHDGELQEKMFEVLGFTKEQAQEQFGFLLDAFKYGAPPHGGIALGLDRLVMLLTNRTNLRDTIAFPKTASATCLLTNAPGEVSDKQLEELSLRIRH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP026063_1	1.1\|135306\|34\|CP026063\|CRISPRCasFinder	135306-135339	34	CP026063.1	1636534-1636567	0	1.0
CP026063_1	1.1\|135306\|34\|CP026063\|CRISPRCasFinder	135306-135339	34	CP026063.1	1992599-1992632	0	1.0
CP026063_7	7.1\|1636559\|31\|CP026063\|CRISPRCasFinder	1636559-1636589	31	CP026063.1	1123423-1123453	0	1.0
CP026063_8	8.1\|1642026\|22\|CP026063\|CRT	1642026-1642047	22	CP026063.1	34275-34296	0	1.0
CP026063_8	8.1\|1642026\|22\|CP026063\|CRT	1642026-1642047	22	CP026063.1	1000096-1000117	0	1.0
CP026063_8	8.1\|1642026\|22\|CP026063\|CRT	1642026-1642047	22	CP026063.1	1000154-1000175	0	1.0
CP026063_8	8.1\|1642026\|22\|CP026063\|CRT	1642026-1642047	22	CP026063.1	1000212-1000233	0	1.0
CP026063_8	8.1\|1642026\|22\|CP026063\|CRT	1642026-1642047	22	CP026063.1	1123348-1123369	0	1.0
CP026063_8	8.1\|1642026\|22\|CP026063\|CRT	1642026-1642047	22	CP026063.1	1123458-1123479	0	1.0
CP026063_8	8.1\|1642026\|22\|CP026063\|CRT	1642026-1642047	22	CP026063.1	1467079-1467100	0	1.0
CP026063_8	8.1\|1642026\|22\|CP026063\|CRT	1642026-1642047	22	CP026063.1	1593109-1593130	0	1.0
CP026063_8	8.1\|1642026\|22\|CP026063\|CRT	1642026-1642047	22	CP026063.1	1685543-1685564	0	1.0
CP026063_8	8.1\|1642026\|22\|CP026063\|CRT	1642026-1642047	22	CP026063.1	2204177-2204198	0	1.0
CP026063_8	8.1\|1642026\|22\|CP026063\|CRT	1642026-1642047	22	CP026063.1	2292728-2292749	0	1.0
CP026063_8	8.1\|1642026\|22\|CP026063\|CRT	1642026-1642047	22	CP026063.1	2473846-2473867	0	1.0
CP026063_8	8.1\|1642026\|22\|CP026063\|CRT	1642026-1642047	22	CP026063.1	2488380-2488401	0	1.0
CP026063_8	8.3\|1642143\|22\|CP026063\|CRT	1642143-1642164	22	CP026063.1	34275-34296	0	1.0
CP026063_8	8.3\|1642143\|22\|CP026063\|CRT	1642143-1642164	22	CP026063.1	1000096-1000117	0	1.0
CP026063_8	8.3\|1642143\|22\|CP026063\|CRT	1642143-1642164	22	CP026063.1	1000154-1000175	0	1.0
CP026063_8	8.3\|1642143\|22\|CP026063\|CRT	1642143-1642164	22	CP026063.1	1000212-1000233	0	1.0
CP026063_8	8.3\|1642143\|22\|CP026063\|CRT	1642143-1642164	22	CP026063.1	1123348-1123369	0	1.0
CP026063_8	8.3\|1642143\|22\|CP026063\|CRT	1642143-1642164	22	CP026063.1	1123458-1123479	0	1.0
CP026063_8	8.3\|1642143\|22\|CP026063\|CRT	1642143-1642164	22	CP026063.1	1467079-1467100	0	1.0
CP026063_8	8.3\|1642143\|22\|CP026063\|CRT	1642143-1642164	22	CP026063.1	1593109-1593130	0	1.0
CP026063_8	8.3\|1642143\|22\|CP026063\|CRT	1642143-1642164	22	CP026063.1	1685543-1685564	0	1.0
CP026063_8	8.3\|1642143\|22\|CP026063\|CRT	1642143-1642164	22	CP026063.1	2204177-2204198	0	1.0
CP026063_8	8.3\|1642143\|22\|CP026063\|CRT	1642143-1642164	22	CP026063.1	2292728-2292749	0	1.0
CP026063_8	8.3\|1642143\|22\|CP026063\|CRT	1642143-1642164	22	CP026063.1	2473846-2473867	0	1.0
CP026063_8	8.3\|1642143\|22\|CP026063\|CRT	1642143-1642164	22	CP026063.1	2488380-2488401	0	1.0
CP026063_9	9.1\|1649328\|32\|CP026063\|CRISPRCasFinder	1649328-1649359	32	CP026063.1	159358-159389	0	1.0
CP026063_9	9.1\|1649328\|32\|CP026063\|CRISPRCasFinder	1649328-1649359	32	CP026063.1	549604-549635	0	1.0
CP026063_9	9.1\|1649328\|32\|CP026063\|CRISPRCasFinder	1649328-1649359	32	CP026063.1	901467-901498	0	1.0
CP026063_9	9.1\|1649328\|32\|CP026063\|CRISPRCasFinder	1649328-1649359	32	CP026063.1	1685799-1685830	0	1.0
CP026063_9	9.1\|1649328\|32\|CP026063\|CRISPRCasFinder	1649328-1649359	32	CP026063.1	2488439-2488470	0	1.0
CP026063_1	1.1\|135306\|34\|CP026063\|CRISPRCasFinder	135306-135339	34	CP026063.1	2593737-2593770	1	0.971
CP026063_4	4.1\|384929\|31\|CP026063\|CRISPRCasFinder	384929-384959	31	CP026063.1	1649278-1649308	1	0.968
CP026063_7	7.1\|1636559\|31\|CP026063\|CRISPRCasFinder	1636559-1636589	31	CP026063.1	1123368-1123398	1	0.968
CP026063_8	8.1\|1642026\|22\|CP026063\|CRT	1642026-1642047	22	CP026063.1	1799611-1799632	1	0.955
CP026063_8	8.1\|1642026\|22\|CP026063\|CRT	1642026-1642047	22	CP026063.1	2508107-2508128	1	0.955
CP026063_8	8.2\|1642084\|23\|CP026063\|CRT	1642084-1642106	23	CP026063.1	34333-34355	1	0.957
CP026063_8	8.2\|1642084\|23\|CP026063\|CRT	1642084-1642106	23	CP026063.1	374075-374097	1	0.957
CP026063_8	8.2\|1642084\|23\|CP026063\|CRT	1642084-1642106	23	CP026063.1	1000270-1000292	1	0.957
CP026063_8	8.2\|1642084\|23\|CP026063\|CRT	1642084-1642106	23	CP026063.1	1594059-1594081	1	0.957
CP026063_8	8.2\|1642084\|23\|CP026063\|CRT	1642084-1642106	23	CP026063.1	1594337-1594359	1	0.957
CP026063_8	8.2\|1642084\|23\|CP026063\|CRT	1642084-1642106	23	CP026063.1	2204293-2204315	1	0.957
CP026063_8	8.3\|1642143\|22\|CP026063\|CRT	1642143-1642164	22	CP026063.1	1799611-1799632	1	0.955
CP026063_8	8.3\|1642143\|22\|CP026063\|CRT	1642143-1642164	22	CP026063.1	2508107-2508128	1	0.955
CP026063_8	8.4\|1642201\|23\|CP026063\|CRT	1642201-1642223	23	CP026063.1	34333-34355	1	0.957
CP026063_8	8.4\|1642201\|23\|CP026063\|CRT	1642201-1642223	23	CP026063.1	374075-374097	1	0.957
CP026063_8	8.4\|1642201\|23\|CP026063\|CRT	1642201-1642223	23	CP026063.1	1000270-1000292	1	0.957
CP026063_8	8.4\|1642201\|23\|CP026063\|CRT	1642201-1642223	23	CP026063.1	1594059-1594081	1	0.957
CP026063_8	8.4\|1642201\|23\|CP026063\|CRT	1642201-1642223	23	CP026063.1	1594337-1594359	1	0.957
CP026063_8	8.4\|1642201\|23\|CP026063\|CRT	1642201-1642223	23	CP026063.1	2204293-2204315	1	0.957
CP026063_9	9.1\|1649328\|32\|CP026063\|CRISPRCasFinder	1649328-1649359	32	CP026063.1	2204351-2204382	1	0.969
CP026063_10	10.1\|1685494\|34\|CP026063\|CRISPRCasFinder	1685494-1685527	34	CP026063.1	2204273-2204306	1	0.971
CP026063_11	11.1\|2473796\|33\|CP026063\|CRISPRCasFinder	2473796-2473828	33	CP026063.1	1000251-1000283	1	0.97
CP026063_11	11.1\|2473796\|33\|CP026063\|CRISPRCasFinder	2473796-2473828	33	CP026063.1	2204274-2204306	1	0.97
CP026063_1	1.1\|135306\|34\|CP026063\|CRISPRCasFinder	135306-135339	34	CP026063.1	823789-823822	2	0.941
CP026063_1	1.1\|135306\|34\|CP026063\|CRISPRCasFinder	135306-135339	34	CP026063.1	2208647-2208680	2	0.941
CP026063_4	4.1\|384929\|31\|CP026063\|CRISPRCasFinder	384929-384959	31	CP026063.1	32927-32957	2	0.935
CP026063_4	4.1\|384929\|31\|CP026063\|CRISPRCasFinder	384929-384959	31	CP026063.1	374128-374158	2	0.935
CP026063_4	4.1\|384929\|31\|CP026063\|CRISPRCasFinder	384929-384959	31	CP026063.1	549610-549640	2	0.935
CP026063_4	4.1\|384929\|31\|CP026063\|CRISPRCasFinder	384929-384959	31	CP026063.1	901473-901503	2	0.935
CP026063_4	4.1\|384929\|31\|CP026063\|CRISPRCasFinder	384929-384959	31	CP026063.1	1199765-1199795	2	0.935
CP026063_4	4.1\|384929\|31\|CP026063\|CRISPRCasFinder	384929-384959	31	CP026063.1	1467134-1467164	2	0.935
CP026063_4	4.1\|384929\|31\|CP026063\|CRISPRCasFinder	384929-384959	31	CP026063.1	1685805-1685835	2	0.935
CP026063_4	4.1\|384929\|31\|CP026063\|CRISPRCasFinder	384929-384959	31	CP026063.1	1895609-1895639	2	0.935
CP026063_4	4.1\|384929\|31\|CP026063\|CRISPRCasFinder	384929-384959	31	CP026063.1	1998200-1998230	2	0.935
CP026063_4	4.1\|384929\|31\|CP026063\|CRISPRCasFinder	384929-384959	31	CP026063.1	2204232-2204262	2	0.935
CP026063_4	4.1\|384929\|31\|CP026063\|CRISPRCasFinder	384929-384959	31	CP026063.1	2292664-2292694	2	0.935
CP026063_4	4.1\|384929\|31\|CP026063\|CRISPRCasFinder	384929-384959	31	CP026063.1	2292780-2292810	2	0.935
CP026063_4	4.1\|384929\|31\|CP026063\|CRISPRCasFinder	384929-384959	31	CP026063.1	2488434-2488464	2	0.935
CP026063_8	8.2\|1642084\|23\|CP026063\|CRT	1642084-1642106	23	CP026063.1	135363-135385	2	0.913
CP026063_8	8.2\|1642084\|23\|CP026063\|CRT	1642084-1642106	23	CP026063.1	2292611-2292633	2	0.913
CP026063_8	8.4\|1642201\|23\|CP026063\|CRT	1642201-1642223	23	CP026063.1	135363-135385	2	0.913
CP026063_8	8.4\|1642201\|23\|CP026063\|CRT	1642201-1642223	23	CP026063.1	2292611-2292633	2	0.913
CP026063_12	12.1\|2508268\|35\|CP026063\|CRISPRCasFinder	2508268-2508302	35	CP026063.1	1685527-1685561	2	0.943
CP026063_12	12.1\|2508268\|35\|CP026063\|CRISPRCasFinder	2508268-2508302	35	CP026063.1	2508091-2508125	2	0.943

1. spacer 1.1|135306|34|CP026063|CRISPRCasFinder matches to position: 1636534-1636567, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

2. spacer 1.1|135306|34|CP026063|CRISPRCasFinder matches to position: 1992599-1992632, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

3. spacer 7.1|1636559|31|CP026063|CRISPRCasFinder matches to position: 1123423-1123453, mismatch: 0, identity: 1.0

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
*******************************

4. spacer 8.1|1642026|22|CP026063|CRT matches to position: 34275-34296, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

5. spacer 8.1|1642026|22|CP026063|CRT matches to position: 1000096-1000117, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

6. spacer 8.1|1642026|22|CP026063|CRT matches to position: 1000154-1000175, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

7. spacer 8.1|1642026|22|CP026063|CRT matches to position: 1000212-1000233, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

8. spacer 8.1|1642026|22|CP026063|CRT matches to position: 1123348-1123369, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

9. spacer 8.1|1642026|22|CP026063|CRT matches to position: 1123458-1123479, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

10. spacer 8.1|1642026|22|CP026063|CRT matches to position: 1467079-1467100, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

11. spacer 8.1|1642026|22|CP026063|CRT matches to position: 1593109-1593130, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

12. spacer 8.1|1642026|22|CP026063|CRT matches to position: 1685543-1685564, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

13. spacer 8.1|1642026|22|CP026063|CRT matches to position: 2204177-2204198, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

14. spacer 8.1|1642026|22|CP026063|CRT matches to position: 2292728-2292749, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

15. spacer 8.1|1642026|22|CP026063|CRT matches to position: 2473846-2473867, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

16. spacer 8.1|1642026|22|CP026063|CRT matches to position: 2488380-2488401, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

17. spacer 8.3|1642143|22|CP026063|CRT matches to position: 34275-34296, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

18. spacer 8.3|1642143|22|CP026063|CRT matches to position: 1000096-1000117, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

19. spacer 8.3|1642143|22|CP026063|CRT matches to position: 1000154-1000175, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

20. spacer 8.3|1642143|22|CP026063|CRT matches to position: 1000212-1000233, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

21. spacer 8.3|1642143|22|CP026063|CRT matches to position: 1123348-1123369, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

22. spacer 8.3|1642143|22|CP026063|CRT matches to position: 1123458-1123479, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

23. spacer 8.3|1642143|22|CP026063|CRT matches to position: 1467079-1467100, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

24. spacer 8.3|1642143|22|CP026063|CRT matches to position: 1593109-1593130, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

25. spacer 8.3|1642143|22|CP026063|CRT matches to position: 1685543-1685564, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

26. spacer 8.3|1642143|22|CP026063|CRT matches to position: 2204177-2204198, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

27. spacer 8.3|1642143|22|CP026063|CRT matches to position: 2292728-2292749, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

28. spacer 8.3|1642143|22|CP026063|CRT matches to position: 2473846-2473867, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

29. spacer 8.3|1642143|22|CP026063|CRT matches to position: 2488380-2488401, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

30. spacer 9.1|1649328|32|CP026063|CRISPRCasFinder matches to position: 159358-159389, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

31. spacer 9.1|1649328|32|CP026063|CRISPRCasFinder matches to position: 549604-549635, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

32. spacer 9.1|1649328|32|CP026063|CRISPRCasFinder matches to position: 901467-901498, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

33. spacer 9.1|1649328|32|CP026063|CRISPRCasFinder matches to position: 1685799-1685830, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

34. spacer 9.1|1649328|32|CP026063|CRISPRCasFinder matches to position: 2488439-2488470, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

35. spacer 1.1|135306|34|CP026063|CRISPRCasFinder matches to position: 2593737-2593770, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

36. spacer 4.1|384929|31|CP026063|CRISPRCasFinder matches to position: 1649278-1649308, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

37. spacer 7.1|1636559|31|CP026063|CRISPRCasFinder matches to position: 1123368-1123398, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
****************************.**

38. spacer 8.1|1642026|22|CP026063|CRT matches to position: 1799611-1799632, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

39. spacer 8.1|1642026|22|CP026063|CRT matches to position: 2508107-2508128, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

40. spacer 8.2|1642084|23|CP026063|CRT matches to position: 34333-34355, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

41. spacer 8.2|1642084|23|CP026063|CRT matches to position: 374075-374097, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

42. spacer 8.2|1642084|23|CP026063|CRT matches to position: 1000270-1000292, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

43. spacer 8.2|1642084|23|CP026063|CRT matches to position: 1594059-1594081, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

44. spacer 8.2|1642084|23|CP026063|CRT matches to position: 1594337-1594359, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

45. spacer 8.2|1642084|23|CP026063|CRT matches to position: 2204293-2204315, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

46. spacer 8.3|1642143|22|CP026063|CRT matches to position: 1799611-1799632, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

47. spacer 8.3|1642143|22|CP026063|CRT matches to position: 2508107-2508128, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

48. spacer 8.4|1642201|23|CP026063|CRT matches to position: 34333-34355, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

49. spacer 8.4|1642201|23|CP026063|CRT matches to position: 374075-374097, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

50. spacer 8.4|1642201|23|CP026063|CRT matches to position: 1000270-1000292, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

51. spacer 8.4|1642201|23|CP026063|CRT matches to position: 1594059-1594081, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

52. spacer 8.4|1642201|23|CP026063|CRT matches to position: 1594337-1594359, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

53. spacer 8.4|1642201|23|CP026063|CRT matches to position: 2204293-2204315, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

54. spacer 9.1|1649328|32|CP026063|CRISPRCasFinder matches to position: 2204351-2204382, mismatch: 1, identity: 0.969

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaaactgactttccgc	Protospacer
*******************.************

55. spacer 10.1|1685494|34|CP026063|CRISPRCasFinder matches to position: 2204273-2204306, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

56. spacer 11.1|2473796|33|CP026063|CRISPRCasFinder matches to position: 1000251-1000283, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

57. spacer 11.1|2473796|33|CP026063|CRISPRCasFinder matches to position: 2204274-2204306, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

58. spacer 1.1|135306|34|CP026063|CRISPRCasFinder matches to position: 823789-823822, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

59. spacer 1.1|135306|34|CP026063|CRISPRCasFinder matches to position: 2208647-2208680, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

60. spacer 4.1|384929|31|CP026063|CRISPRCasFinder matches to position: 32927-32957, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

61. spacer 4.1|384929|31|CP026063|CRISPRCasFinder matches to position: 374128-374158, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

62. spacer 4.1|384929|31|CP026063|CRISPRCasFinder matches to position: 549610-549640, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

63. spacer 4.1|384929|31|CP026063|CRISPRCasFinder matches to position: 901473-901503, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

64. spacer 4.1|384929|31|CP026063|CRISPRCasFinder matches to position: 1199765-1199795, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

65. spacer 4.1|384929|31|CP026063|CRISPRCasFinder matches to position: 1467134-1467164, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

66. spacer 4.1|384929|31|CP026063|CRISPRCasFinder matches to position: 1685805-1685835, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

67. spacer 4.1|384929|31|CP026063|CRISPRCasFinder matches to position: 1895609-1895639, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

68. spacer 4.1|384929|31|CP026063|CRISPRCasFinder matches to position: 1998200-1998230, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

69. spacer 4.1|384929|31|CP026063|CRISPRCasFinder matches to position: 2204232-2204262, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

70. spacer 4.1|384929|31|CP026063|CRISPRCasFinder matches to position: 2292664-2292694, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

71. spacer 4.1|384929|31|CP026063|CRISPRCasFinder matches to position: 2292780-2292810, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

72. spacer 4.1|384929|31|CP026063|CRISPRCasFinder matches to position: 2488434-2488464, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

73. spacer 8.2|1642084|23|CP026063|CRT matches to position: 135363-135385, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

74. spacer 8.2|1642084|23|CP026063|CRT matches to position: 2292611-2292633, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

75. spacer 8.4|1642201|23|CP026063|CRT matches to position: 135363-135385, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

76. spacer 8.4|1642201|23|CP026063|CRT matches to position: 2292611-2292633, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

77. spacer 12.1|2508268|35|CP026063|CRISPRCasFinder matches to position: 1685527-1685561, mismatch: 2, identity: 0.943

tccccaacttccattgcctgtagaatttctttacg	CRISPR spacer
tccccaacttgcattgcctgtagaatttcttttcg	Protospacer
********** ********************* **

78. spacer 12.1|2508268|35|CP026063|CRISPRCasFinder matches to position: 2508091-2508125, mismatch: 2, identity: 0.943

tccccaacttccattgcctgtagaatttctttacg	CRISPR spacer
tccccaactggcattgcctgtagaatttctttacg	Protospacer
*********  ************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026063_8	8.2\|1642084\|23\|CP026063\|CRT	1642084-1642106	23	AP014226	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, * SEQUENCING IN PROGRESS *	28490-28512	3	0.87
CP026063_8	8.2\|1642084\|23\|CP026063\|CRT	1642084-1642106	23	AP014225	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, * SEQUENCING IN PROGRESS *	24653-24675	3	0.87
CP026063_8	8.4\|1642201\|23\|CP026063\|CRT	1642201-1642223	23	AP014226	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, * SEQUENCING IN PROGRESS *	28490-28512	3	0.87
CP026063_8	8.4\|1642201\|23\|CP026063\|CRT	1642201-1642223	23	AP014225	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, * SEQUENCING IN PROGRESS *	24653-24675	3	0.87
CP026063_3	3.1\|276886\|34\|CP026063\|CRISPRCasFinder	276886-276919	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
CP026063_3	3.1\|276886\|34\|CP026063\|CRISPRCasFinder	276886-276919	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765

1. spacer 8.2|1642084|23|CP026063|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

2. spacer 8.2|1642084|23|CP026063|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

3. spacer 8.4|1642201|23|CP026063|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

4. spacer 8.4|1642201|23|CP026063|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

5. spacer 3.1|276886|34|CP026063|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **

6. spacer 3.1|276886|34|CP026063|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

58306 : 140246

113

Staphylococcus_phage(92.68%)

head,portal,protease,terminase,capsid,tail,integrase,holin

attL 121731:121747|attR 142902:142918

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU41118.1\|58306_59473_+\|protease	cysteine protease staphopain A	NA	NA	NA	NA
AUU41119.1\|59503_59830_+	staphostatin A	NA	NA	NA	NA
AUU41120.1\|60121_60295_-	NETI motif-containing protein	NA	NA	NA	NA
AUU41121.1\|60275_60878_-	DUF2179 domain-containing protein	NA	NA	NA	NA
AUU41122.1\|61148_61970_-	NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7
AUU41123.1\|61962_63432_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	5.9e-108	45.1
AUU41124.1\|63615_64692_+	nitric oxide synthase oxygenase	NA	NA	NA	NA
AUU41125.1\|64711_65506_+	ACT domain-containing protein	NA	NA	NA	NA
AUU41126.1\|65577_65685_+	hypothetical protein	NA	NA	NA	NA
AUU41127.1\|65695_67258_-	sodium-dependent dicarboxylate transporter SdcS	NA	NA	NA	NA
AUU41128.1\|67462_68560_-	pectate lyase	U5PWM6	Bacillus_phage	3.3e-47	34.6
AUU41129.1\|68928_69489_+	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
AUU41130.1\|69541_70471_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
AUU41131.1\|70663_70837_-	hypothetical protein	NA	NA	NA	NA
AUU41132.1\|70888_72268_+	aldehyde dehydrogenase	NA	NA	NA	NA
AUU41133.1\|72387_73416_-	hypothetical protein	NA	NA	NA	NA
AUU41134.1\|73685_74087_+	YolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
AUU41135.1\|74659_74833_-	hypothetical protein	NA	NA	NA	NA
AUU41136.1\|75283_76324_+	linear amide C-N hydrolase	NA	NA	NA	NA
AUU41137.1\|76380_77223_-	hypothetical protein	NA	NA	NA	NA
AUU41138.1\|77219_77777_-	DUF1700 domain-containing protein	NA	NA	NA	NA
AUU41139.1\|77836_78361_-	hypothetical protein	NA	NA	NA	NA
AUU41140.1\|78481_79045_+	thioredoxin family protein	NA	NA	NA	NA
AUU41141.1\|79110_79851_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
AUU41142.1\|79850_80723_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	1.0e-27	36.0
AUU41143.1\|80719_81400_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
AUU41144.1\|81400_82297_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	5.0e-17	30.2
AUU41145.1\|82293_82674_-	GntR family transcriptional regulator	NA	NA	NA	NA
AUU41146.1\|82931_83108_-	hypothetical protein	NA	NA	NA	NA
AUU41147.1\|83350_83449_-	hypothetical protein	NA	NA	NA	NA
AUU41148.1\|83648_84935_+	aspartate aminotransferase	NA	NA	NA	NA
AUU41149.1\|85213_85504_-	MAP domain-containing protein	NA	NA	NA	NA
AUU41150.1\|85518_86949_-	protein map	NA	NA	NA	NA
AUU41151.1\|87334_87535_+	hypothetical protein	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0
AUU41152.1\|87906_88086_+	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
AUU41153.1\|88109_88418_+	hypothetical protein	M9NTD8	Staphylococcus_phage	9.3e-24	77.5
AUU41154.1\|88396_88657_+	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
AUU41155.1\|88709_89060_-	inhibitor	A7TWS0	Staphylococcus_phage	7.5e-54	100.0
AUU41156.1\|89742_90192_+	chemotaxis inhibitory protein	A7TWR9	Staphylococcus_phage	1.5e-78	100.0
AUU41157.1\|90286_90745_-	amidase	R9QTN8	Staphylococcus_phage	4.9e-85	98.7
AUU41158.1\|91271_91763_-	kinase	A7TWR8	Staphylococcus_phage	8.0e-86	100.0
AUU41159.1\|91953_92709_-	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AUU41160.1\|92720_92975_-\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AUU41161.1\|93026_93134_+	hypothetical protein	NA	NA	NA	NA
AUU41162.1\|93186_93363_-\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
AUU41163.1\|93512_93809_-	DUF2951 domain-containing protein	D2JLG2	Staphylococcus_phage	2.9e-46	100.0
AUU41164.1\|93866_94154_-	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
AUU41165.1\|94200_94353_-	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
AUU41166.1\|94342_98128_-	hypothetical protein	A0A1P8L6B8	Staphylococcus_phage	0.0e+00	100.0
AUU41167.1\|98143_99634_-\|tail	phage tail protein	D2JLF8	Staphylococcus_phage	8.2e-299	100.0
AUU41168.1\|99633_104286_-\|tail	phage tail tape measure protein	Q8SDK4	Staphylococcus_phage	0.0e+00	100.0
AUU41169.1\|104341_104464_-	hypothetical protein	D2JLF6	Staphylococcus_phage	6.9e-15	100.0
AUU41170.1\|104523_104970_-	hypothetical protein	D2JLF5	Staphylococcus_phage	5.4e-73	100.0
AUU41171.1\|105034_105988_-\|tail	phage tail protein	A7TWD0	Staphylococcus_phage	6.2e-175	100.0
AUU41172.1\|105988_106369_-	hypothetical protein	D2JLF3	Staphylococcus_phage	5.8e-68	100.0
AUU41173.1\|106365_106743_-	hypothetical protein	D2JLF2	Staphylococcus_phage	1.1e-61	100.0
AUU41174.1\|106742_107078_-\|head,tail	head-tail adaptor protein	A7TWC7	Staphylococcus_phage	1.1e-59	100.0
AUU41175.1\|107064_107397_-\|head,tail	phage head-tail adapter protein	Q8SDK7	Staphylococcus_phage	3.7e-58	100.0
AUU41176.1\|107405_107564_-	hypothetical protein	D2JLE9	Staphylococcus_phage	3.2e-20	100.0
AUU41177.1\|107599_108847_-\|capsid	phage major capsid protein	A7TWC4	Staphylococcus_phage	5.0e-209	100.0
AUU41178.1\|108934_109519_-\|head,protease	HK97 family phage prohead protease	D2JLE7	Staphylococcus_phage	9.8e-107	100.0
AUU43694.1\|109511_110702_-\|portal	phage portal protein	D2JLE6	Staphylococcus_phage	1.8e-224	100.0
AUU41179.1\|110767_111007_-	hypothetical protein	A7TWC1	Staphylococcus_phage	7.0e-35	100.0
AUU41180.1\|110981_112676_-\|terminase	phage terminase large subunit	D2JLE4	Staphylococcus_phage	0.0e+00	100.0
AUU41181.1\|112678_113146_-\|terminase	phage terminase small subunit P27 family	D2JLE3	Staphylococcus_phage	1.1e-81	100.0
AUU43695.1\|113275_113620_-	HNH endonuclease	D2JLE2	Staphylococcus_phage	4.2e-65	100.0
AUU41182.1\|113635_114088_-	hypothetical protein	A0A1W6JQ01	Staphylococcus_phage	3.6e-80	100.0
AUU41183.1\|114202_114691_-	hypothetical protein	D2JLE0	Staphylococcus_phage	3.8e-72	100.0
AUU41184.1\|114597_114810_+	hypothetical protein	NA	NA	NA	NA
AUU41185.1\|114713_114914_-	DUF1514 domain-containing protein	D2JLD9	Staphylococcus_phage	1.4e-28	100.0
AUU41186.1\|114913_115063_-	transcriptional regulator	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
AUU41187.1\|115059_115266_-	DUF1381 domain-containing protein	A0A1W6JPY0	Staphylococcus_phage	1.9e-20	100.0
AUU41188.1\|115282_115456_-	hypothetical protein	A0A1W6JQ45	Staphylococcus_phage	4.7e-25	100.0
AUU41189.1\|115492_116029_-	dUTPase	A0A1W6JQ21	Staphylococcus_phage	9.4e-96	100.0
AUU41190.1\|116021_116216_-	hypothetical protein	M1SVE4	Staphylococcus_phage	5.9e-24	95.1
AUU41191.1\|116178_116433_-	hypothetical protein	A0A1W6JQ06	Staphylococcus_phage	1.9e-38	100.0
AUU41192.1\|116425_116815_-	acetyltransferase	A0A1W6JPV7	Staphylococcus_phage	3.5e-68	100.0
AUU41193.1\|116811_117159_-	hypothetical protein	A0A1W6JPZ1	Staphylococcus_phage	5.9e-59	100.0
AUU41194.1\|117222_117471_-	hypothetical protein	A0A1W6JPX8	Staphylococcus_phage	2.5e-43	100.0
AUU41195.1\|117471_117843_-	hypothetical protein	A0A1W6JPY5	Staphylococcus_phage	7.5e-52	100.0
AUU41196.1\|117843_118029_-	DUF3113 domain-containing protein	A0A1W6JPY2	Staphylococcus_phage	8.3e-28	100.0
AUU41197.1\|118448_118670_-	hypothetical protein	A0A1W6JQ35	Staphylococcus_phage	1.7e-35	100.0
AUU41198.1\|118682_118841_-	hypothetical protein	A0A2H4PQI7	Staphylococcus_phage	4.5e-22	100.0
AUU41199.1\|118834_119614_-	DNA replication protein DnaC	G4KNP1	Staphylococcus_phage	3.8e-146	100.0
AUU43696.1\|119623_120394_-	replication protein	A0A1W6JQ00	Staphylococcus_phage	6.4e-122	100.0
AUU41200.1\|120459_120741_+	hypothetical protein	A0A1W6JPU7	Staphylococcus_phage	2.6e-49	100.0
AUU41201.1\|120879_121551_-	hypothetical protein	Q8SDM2	Staphylococcus_phage	4.4e-127	100.0
AUU41202.1\|121563_122115_-	single-stranded DNA-binding protein	Q4ZBM4	Staphylococcus_phage	3.4e-101	100.0
121731:121747	attL	NA	NA	NA	NA
AUU41203.1\|122145_122925_-	chromosomal replication initiator DnaA	A0A1W6JPW0	Staphylococcus_phage	1.6e-141	99.2
AUU41204.1\|122917_123139_-	DUF2483 domain-containing protein	A0A1W6JQ25	Staphylococcus_phage	9.3e-34	100.0
AUU41205.1\|123148_123409_-	hypothetical protein	A0A2I6PDH1	Staphylococcus_phage	2.6e-43	100.0
AUU41206.1\|123501_123663_-	DUF1270 domain-containing protein	A0A2I6PDF7	Staphylococcus_phage	1.9e-20	100.0
AUU41207.1\|123659_123980_-	DUF771 domain-containing protein	A0A2I6PDH6	Staphylococcus_phage	1.5e-56	100.0
AUU41208.1\|124038_124671_+	hypothetical protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
AUU41209.1\|124685_124826_-	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
AUU41210.1\|124856_125054_-	hypothetical protein	Q8SDM8	Staphylococcus_phage	7.0e-33	100.0
AUU41211.1\|125069_125819_-	oxidoreductase	Q8SDM9	Staphylococcus_phage	4.4e-136	99.6
AUU41212.1\|125875_126415_+	hypothetical protein	A7TW92	Staphylococcus_phage	1.7e-97	100.0
AUU41213.1\|126438_126699_-	transcriptional regulator	A7TW91	Staphylococcus_phage	2.7e-40	100.0
AUU41214.1\|126716_126941_-	DUF739 domain-containing protein	A7TW90	Staphylococcus_phage	1.7e-35	98.6
AUU41215.1\|127099_127870_+	transcriptional regulator	A0A1P8L6G7	Staphylococcus_phage	6.2e-141	100.0
AUU41216.1\|128069_128252_+	hypothetical protein	R9QT81	Staphylococcus_phage	5.3e-27	100.0
AUU41217.1\|128287_128434_+	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.1e-14	89.6
AUU41218.1\|128430_129045_-	ATPase	A7TW88	Staphylococcus_phage	7.9e-107	100.0
AUU41219.1\|129152_130190_+\|integrase	site-specific integrase	A7TWL3	Staphylococcus_phage	3.4e-179	100.0
AUU41220.1\|130246_131071_+	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	6.8e-162	100.0
AUU41221.1\|131308_132325_-	bi-component leukocidin LukGH subunit G	A0A1X9IGW5	Staphylococcus_phage	6.7e-26	30.2
AUU41222.1\|132346_133402_-	bi-component leukocidin LukGH subunit H	A0A1X9IGW5	Staphylococcus_phage	2.8e-35	34.3
AUU41223.1\|133837_135061_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
AUU41224.1\|135504_136812_+	TrkH family potassium uptake protein	NA	NA	NA	NA
AUU41225.1\|137351_138968_-	molecular chaperone GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
AUU41226.1\|139043_139328_-	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
AUU41227.1\|139502_140246_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
142902:142918	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1572186 : 1580008

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU42554.1\|1572186_1573242_-	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
AUU42555.1\|1573241_1573928_-	DNA-binding response regulator	NA	NA	NA	NA
AUU42556.1\|1573902_1574376_-	DoxX family protein	NA	NA	NA	NA
AUU42557.1\|1575439_1576024_-	hypothetical protein	NA	NA	NA	NA
AUU42558.1\|1576122_1576836_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AUU42559.1\|1576839_1577259_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
AUU42560.1\|1577260_1577929_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AUU42561.1\|1578279_1578873_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
AUU42562.1\|1578856_1580008_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	6.0e-23	35.7

DBSCAN-SWA_3

1591979 : 1606620

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU42572.1\|1591979_1593038_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7
AUU42573.1\|1593376_1593919_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AUU42574.1\|1594090_1594186_+	hypothetical protein	NA	NA	NA	NA
AUU42575.1\|1594361_1594529_+	nitrogen fixation protein NifR	NA	NA	NA	NA
AUU42576.1\|1594797_1595715_-	lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
AUU42577.1\|1595805_1595907_+	hypothetical protein	NA	NA	NA	NA
AUU42578.1\|1595984_1597490_-	peptide ABC transporter permease	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AUU42579.1\|1597555_1597801_-	hypothetical protein	NA	NA	NA	NA
AUU42580.1\|1597830_1598331_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AUU42581.1\|1598350_1599217_-	EamA/RhaT family transporter	NA	NA	NA	NA
AUU42582.1\|1599601_1599868_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA
AUU42583.1\|1600017_1600416_+	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AUU42584.1\|1600378_1602484_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AUU42585.1\|1602601_1603573_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AUU42586.1\|1603753_1603909_+	hypothetical protein	NA	NA	NA	NA
AUU43750.1\|1603947_1604919_+	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
AUU42587.1\|1604905_1605862_+	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AUU42588.1\|1605858_1606620_+	iron ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.5e-18	31.6

DBSCAN-SWA_4

1693880 : 1750551

Staphylococcus_phage(68.66%)

transposase,portal,head,terminase,capsid,tail,integrase,holin

attL 1690129:1690145|attR 1716609:1716625

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1690129:1690145	attL	NA	NA	NA	NA
AUU42678.1\|1693880_1695122_+	cysteine desulfurase	Q2XUY6	environmental_halophage	8.2e-111	44.8
AUU42679.1\|1695111_1695576_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
AUU42680.1\|1695726_1697124_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
AUU42681.1\|1697191_1698241_-\|integrase	site-specific integrase	A1KWY3	Staphylococcus_virus	1.6e-203	100.0
AUU42682.1\|1698302_1698818_-	hypothetical protein	I1W624	Staphylococcus_phage	1.5e-37	100.0
AUU42683.1\|1698821_1699322_-	hypothetical protein	B7T094	Staphylococcus_virus	1.1e-71	100.0
AUU42684.1\|1699372_1700011_-	helix-turn-helix domain-containing protein	I1W622	Staphylococcus_phage	1.5e-116	100.0
AUU42685.1\|1700201_1700456_+	XRE family transcriptional regulator	A0A0E3T8G8	Staphylococcus_phage	8.2e-42	100.0
AUU42686.1\|1700471_1701260_+	phage antirepressor	A0A0E3XC38	Staphylococcus_phage	1.6e-144	99.6
AUU42687.1\|1701276_1701471_+	hypothetical protein	A0A1X9H0A2	Staphylococcus_phage	9.7e-19	96.9
AUU42688.1\|1701501_1701717_+	hypothetical protein	E9LT76	Staphylococcus_phage	1.1e-31	97.2
AUU42689.1\|1701672_1701918_-	hypothetical protein	E9LT77	Staphylococcus_phage	1.3e-36	97.5
AUU42690.1\|1701988_1702210_+	hypothetical protein	A0A0E3T8H0	Staphylococcus_phage	6.7e-32	100.0
AUU42691.1\|1702202_1702364_+	DUF1270 domain-containing protein	A0A2H4PQQ1	Staphylococcus_phage	3.3e-20	100.0
AUU42692.1\|1702455_1702716_+	DUF1108 domain-containing protein	A1KX65	Staphylococcus_virus	2.2e-42	97.7
AUU42693.1\|1702725_1702947_+	DUF2483 domain-containing protein	A0A0E3TAJ7	Staphylococcus_phage	2.4e-34	100.0
AUU42694.1\|1702939_1703719_+	chromosomal replication initiator DnaA	Q9G028	Staphylococcus_virus	4.0e-140	98.1
AUU42695.1\|1703749_1704301_+	single-stranded DNA-binding protein	Q4ZBM4	Staphylococcus_phage	3.4e-101	100.0
AUU42696.1\|1704313_1704985_+	hypothetical protein	W5R8I8	Staphylococcus_phage	3.7e-126	97.8
AUU42697.1\|1704977_1705730_+	DnaD domain protein	Q4ZCW8	Staphylococcus_virus	2.6e-120	88.0
AUU42698.1\|1705729_1706086_+	hypothetical protein	B7T0A8	Staphylococcus_virus	3.8e-61	96.6
AUU42699.1\|1706082_1707324_+	damage-inducible protein	C8CGZ3	Staphylococcus_phage	2.2e-228	99.3
AUU42700.1\|1707320_1707536_+	hypothetical protein	A9CR72	Staphylococcus_phage	2.8e-35	100.0
AUU42701.1\|1707538_1707760_+	hypothetical protein	Q9G021	Staphylococcus_phage	1.1e-34	98.6
AUU42702.1\|1707770_1708175_+	hypothetical protein	A0A0H4ISQ5	Staphylococcus_phage	9.0e-67	100.0
AUU42703.1\|1708179_1708365_+	DUF3113 domain-containing protein	A0A2I6PDU9	Staphylococcus_phage	1.4e-27	100.0
AUU42704.1\|1708365_1708722_+	hypothetical protein	A0A2I6PDX2	Staphylococcus_phage	7.2e-60	99.2
AUU42705.1\|1708725_1708968_+	hypothetical protein	A0A2I6PDU1	Staphylococcus_phage	3.9e-41	100.0
AUU42706.1\|1708982_1709231_+	DUF1024 domain-containing protein	Q4ZDW9	Staphylococcus_virus	3.5e-37	96.3
AUU42707.1\|1709223_1709763_+	dUTPase	B2ZYX2	Staphylococcus_phage	3.7e-60	70.6
AUU42708.1\|1709799_1710006_+	DUF1381 domain-containing protein	A0A2I6PEM9	Staphylococcus_phage	1.6e-16	95.6
AUU42709.1\|1710002_1710389_+	hypothetical protein	Q4ZDW6	Staphylococcus_virus	4.0e-64	100.0
AUU42710.1\|1710385_1710559_+	transcriptional regulator	Q4ZAX6	Staphylococcus_virus	4.1e-21	96.5
AUU42711.1\|1710559_1710925_+	hypothetical protein	I1W652	Staphylococcus_phage	1.3e-59	100.0
AUU42712.1\|1710925_1711072_+	hypothetical protein	A0A059T5A8	Staphylococcus_phage	2.2e-15	100.0
AUU42713.1\|1711095_1711518_+	transcriptional regulator	Q8SDV1	Staphylococcus_phage	1.6e-74	100.0
AUU43753.1\|1711705_1712200_+\|terminase	terminase small subunit	B7T0C5	Staphylococcus_virus	1.2e-86	97.0
AUU42714.1\|1712202_1713498_+\|terminase	PBSX family phage terminase large subunit	A0A0F6N3L3	Staphylococcus_phage	1.7e-252	97.7
AUU42715.1\|1713508_1715044_+\|portal	phage portal protein	Q4ZDV9	Staphylococcus_virus	9.3e-290	99.4
AUU42716.1\|1715050_1716046_+\|head	phage head morphogenesis protein	B2ZYY2	Staphylococcus_phage	3.4e-184	100.0
AUU42717.1\|1716118_1716289_+	hypothetical protein	A0A0F6N3E9	Staphylococcus_phage	1.5e-23	100.0
AUU42718.1\|1716397_1717018_+	DUF4355 domain-containing protein	B2ZYY4	Staphylococcus_phage	8.6e-77	99.0
1716609:1716625	attR	NA	NA	NA	NA
AUU42719.1\|1717031_1718006_+\|capsid	phage major capsid protein	Q4ZDM8	Staphylococcus_virus	6.3e-183	99.7
AUU42720.1\|1718027_1718315_+	hypothetical protein	S4V6D9	Staphylococcus_phage	1.4e-45	98.9
AUU42721.1\|1718323_1718656_+\|head,tail	phage head-tail adapter protein	E0Y3L2	Staphylococcus_virus	4.6e-53	98.2
AUU42722.1\|1718652_1718955_+	hypothetical protein	A4ZFB6	Staphylococcus_virus	1.3e-49	95.0
AUU42723.1\|1718954_1719302_+	hypothetical protein	A0A0F6N3F5	Staphylococcus_phage	4.1e-60	100.0
AUU42724.1\|1719313_1719697_+	hypothetical protein	A0A0F6N3L1	Staphylococcus_phage	5.9e-68	98.4
AUU42725.1\|1719715_1720297_+\|tail	phage major tail protein, TP901-1 family	A0EWT6	Staphylococcus_virus	5.4e-105	99.5
AUU42726.1\|1720359_1720725_+\|tail	phage tail protein	A0A0F6N4J9	Staphylococcus_phage	3.6e-59	100.0
AUU42727.1\|1720754_1721099_+	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	2.5e-57	100.0
AUU42728.1\|1721115_1724583_+	hypothetical protein	Q4ZDU6	Staphylococcus_virus	4.1e-269	97.1
AUU42729.1\|1724595_1725543_+\|tail	phage tail family protein	Q8SDT6	Staphylococcus_phage	2.1e-183	100.0
AUU42730.1\|1725551_1727453_+	peptidase	Q8SDT5	Staphylococcus_phage	0.0e+00	100.0
AUU42731.1\|1727467_1729378_+	hypothetical protein	I1W633	Staphylococcus_phage	0.0e+00	99.8
AUU42732.1\|1729377_1731201_+	DUF2479 domain-containing protein	A1KX42	Staphylococcus_virus	4.6e-296	99.0
AUU42733.1\|1731200_1731578_+	hypothetical protein	A0A0F6N3G4	Staphylococcus_phage	1.5e-60	100.0
AUU42734.1\|1731581_1731755_+	XkdX family protein	A0A059T7K6	Staphylococcus_phage	1.5e-26	96.5
AUU43754.1\|1731794_1732094_+	hypothetical protein	A0A0H4ITZ0	Staphylococcus_phage	7.6e-47	100.0
AUU42735.1\|1732230_1734129_+	CHAP domain-containing protein	A0EX80	Staphylococcus_virus	0.0e+00	99.5
AUU42736.1\|1734141_1735314_+	DUF2479 domain-containing protein	I1W629	Staphylococcus_phage	3.5e-196	98.7
AUU42737.1\|1735319_1735715_+	hypothetical protein	A0EWU9	Staphylococcus_virus	2.7e-68	99.2
AUU42738.1\|1735771_1736026_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	1.2e-40	98.8
AUU42739.1\|1736037_1736793_+	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AUU42740.1\|1736983_1737475_+	kinase	A7TWR8	Staphylococcus_phage	8.0e-86	100.0
AUU42741.1\|1737863_1738016_+	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	3.1e-20	100.0
AUU42742.1\|1738086_1738197_+	hypothetical protein	W5R8J7	Staphylococcus_phage	1.7e-12	100.0
AUU42743.1\|1738183_1738384_+	hypothetical protein	W5R9N2	Staphylococcus_phage	3.7e-29	100.0
AUU43755.1\|1739877_1740060_+	hypothetical protein	NA	NA	NA	NA
AUU42744.1\|1740056_1740740_+	hypothetical protein	A0A0A7S0U2	Clostridium_phage	1.1e-13	28.3
AUU42745.1\|1740963_1741194_-	hypothetical protein	NA	NA	NA	NA
AUU42746.1\|1741292_1741607_-	hypothetical protein	NA	NA	NA	NA
AUU42747.1\|1741971_1743012_+	HlyC/CorC family transporter	NA	NA	NA	NA
AUU42748.1\|1743025_1744093_+	nitronate monooxygenase	NA	NA	NA	NA
AUU42749.1\|1744346_1744430_+	hypothetical protein	NA	NA	NA	NA
AUU42750.1\|1744477_1745326_+	DUF72 domain-containing protein	NA	NA	NA	NA
AUU42751.1\|1745338_1746166_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
AUU42752.1\|1746192_1747512_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
AUU42753.1\|1747595_1748513_+	lipoyl synthase	NA	NA	NA	NA
AUU42754.1\|1748642_1749026_+	DUF1027 domain-containing protein	NA	NA	NA	NA
AUU42755.1\|1749231_1750551_+\|transposase	ISL3-like element IS1181 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1825067 : 1878191

Streptococcus_phage(28.57%)

tRNA,holin,bacteriocin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU42823.1\|1825067_1826057_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
AUU42824.1\|1826350_1826746_+	transcriptional regulator Spx	NA	NA	NA	NA
AUU42825.1\|1827116_1827836_+	adaptor protein MecA	NA	NA	NA	NA
AUU42826.1\|1827956_1828943_+	competence protein CoiA	NA	NA	NA	NA
AUU42827.1\|1828990_1830799_+	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	5.5e-47	24.5
AUU42828.1\|1831258_1832065_-	DsbA family protein	NA	NA	NA	NA
AUU42829.1\|1832087_1832453_-	globin	NA	NA	NA	NA
AUU42830.1\|1832556_1833150_-	CYTH domain-containing protein	NA	NA	NA	NA
AUU42831.1\|1833335_1833683_+	hypothetical protein	NA	NA	NA	NA
AUU42832.1\|1833699_1834335_+	GTP pyrophosphokinase	NA	NA	NA	NA
AUU42833.1\|1834351_1835161_+	NAD(+) kinase	NA	NA	NA	NA
AUU42834.1\|1835157_1836012_+	RluA family pseudouridine synthase	NA	NA	NA	NA
AUU42835.1\|1836032_1837418_+	magnesium transporter	NA	NA	NA	NA
AUU42836.1\|1837427_1839272_+	sodium:proton antiporter	NA	NA	NA	NA
AUU42837.1\|1839549_1840320_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA
AUU42838.1\|1840516_1841602_-	AI-2E family transporter	NA	NA	NA	NA
AUU42839.1\|1841943_1843512_+	alanine:cation symporter family protein	NA	NA	NA	NA
AUU42840.1\|1843656_1844415_+	esterase family protein	NA	NA	NA	NA
AUU42841.1\|1844608_1845118_+	hypothetical protein	NA	NA	NA	NA
AUU42842.1\|1845230_1846439_-	MFS transporter	NA	NA	NA	NA
AUU42843.1\|1846398_1847574_-	diacylglycerol beta-glucosyltransferase	NA	NA	NA	NA
AUU42844.1\|1848006_1849491_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA
AUU42845.1\|1849471_1849732_+	hypothetical protein	NA	NA	NA	NA
AUU42846.1\|1849731_1851294_+	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	1.7e-36	28.2
AUU42847.1\|1851595_1852399_+	hypothetical protein	S5MAL1	Bacillus_phage	1.6e-30	40.5
AUU42848.1\|1852617_1854942_+	PDZ domain-containing protein	W5SAB9	Pithovirus	2.8e-11	27.4
AUU42849.1\|1854958_1856317_+	Ktr system potassium uptake protein D	NA	NA	NA	NA
AUU42850.1\|1856455_1857967_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
AUU42851.1\|1858453_1859023_-	competence protein ComK	NA	NA	NA	NA
AUU42852.1\|1859232_1859451_+	IDEAL domain-containing protein	NA	NA	NA	NA
AUU42853.1\|1859531_1860518_-	lipoate--protein ligase	NA	NA	NA	NA
AUU42854.1\|1860716_1860893_+	DUF2187 domain-containing protein	NA	NA	NA	NA
AUU42855.1\|1860907_1861510_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AUU43757.1\|1861809_1861887_+\|holin	putative holin-like toxin	NA	NA	NA	NA
AUU42856.1\|1862425_1862527_+	hypothetical protein	NA	NA	NA	NA
AUU43758.1\|1862536_1862809_+\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
AUU42857.1\|1862852_1864817_+	DUF1430 domain-containing protein	NA	NA	NA	NA
AUU42858.1\|1864819_1865140_+	hypothetical protein	NA	NA	NA	NA
AUU42859.1\|1865136_1865778_+\|bacteriocin	bacteriocin ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-19	33.0
AUU42860.1\|1865865_1866156_-	hypothetical protein	NA	NA	NA	NA
AUU42861.1\|1866296_1866434_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA
AUU42862.1\|1866522_1866879_-	DoxX family protein	NA	NA	NA	NA
AUU42863.1\|1867366_1868326_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUU42864.1\|1868371_1868503_-	hypothetical protein	NA	NA	NA	NA
AUU42865.1\|1868566_1868857_-	NINE protein	A0A060AN66	Enterococcus_phage	7.5e-07	38.0
AUU42866.1\|1868946_1869498_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AUU42867.1\|1869549_1870488_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
AUU42868.1\|1870638_1870743_+	hypothetical protein	NA	NA	NA	NA
AUU42869.1\|1870819_1872031_+	isochorismate synthase	NA	NA	NA	NA
AUU42870.1\|1872017_1873691_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	NA	NA	NA	NA
AUU42871.1\|1873677_1874481_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
AUU42872.1\|1874473_1875295_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
AUU42873.1\|1875532_1875862_-	staphostatin B	NA	NA	NA	NA
AUU42874.1\|1875899_1877081_-\|protease	cysteine protease staphopain B	NA	NA	NA	NA
AUU42875.1\|1877162_1878191_-\|protease	serine protease	A0A2H4PQP7	Staphylococcus_phage	6.3e-16	32.3

DBSCAN-SWA_6

1897119 : 1905592

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU42891.1\|1897119_1897602_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
AUU42892.1\|1897588_1898713_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AUU42893.1\|1898716_1899421_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AUU42894.1\|1899420_1899684_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AUU42895.1\|1899685_1900357_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AUU42896.1\|1900349_1902539_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.5e-141	39.8
AUU42897.1\|1902517_1904002_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.7
AUU42898.1\|1903994_1905023_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
AUU42899.1\|1905025_1905592_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_7

2523383 : 2532426

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU43469.1\|2523383_2523902_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
AUU43470.1\|2523923_2526197_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	8.1e-64	29.3
AUU43471.1\|2526399_2528679_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AUU43472.1\|2528953_2529214_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AUU43473.1\|2529232_2530372_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AUU43474.1\|2530394_2531420_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AUU43475.1\|2531421_2532426_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_8

2646454 : 2718067

Staphylococcus_phage(95.74%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU43581.1\|2646454_2647099_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
AUU43582.1\|2647113_2647905_-	phosphotransferase	NA	NA	NA	NA
AUU43583.1\|2648454_2649303_-	D-amino-acid transaminase	NA	NA	NA	NA
AUU43584.1\|2649306_2650716_-	dipeptidase PepV	NA	NA	NA	NA
AUU43585.1\|2651273_2651696_-	YtxH domain-containing protein	NA	NA	NA	NA
AUU43586.1\|2651712_2652408_-	rRNA pseudouridine synthase	NA	NA	NA	NA
AUU43587.1\|2652404_2654066_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
AUU43588.1\|2654472_2655741_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	9.1e-57	99.1
AUU43589.1\|2655857_2662418_-	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	6.1e-306	98.3
AUU43590.1\|2662743_2663055_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	4.8e-52	99.0
AUU43591.1\|2663076_2665494_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.5
AUU43592.1\|2665781_2666963_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	7.3e-218	99.7
AUU43593.1\|2667072_2668026_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AUU43594.1\|2668022_2668586_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AUU43595.1\|2668708_2669110_-	MarR family transcriptional regulator	NA	NA	NA	NA
AUU43596.1\|2669681_2670509_-	alpha/beta hydrolase	NA	NA	NA	NA
AUU43597.1\|2670511_2670631_-	hypothetical protein	NA	NA	NA	NA
AUU43598.1\|2670742_2671744_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	2.6e-184	99.4
AUU43599.1\|2671865_2672330_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
AUU43600.1\|2672342_2673524_-	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	5.6e-226	99.5
AUU43601.1\|2673534_2674167_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.5e-111	98.6
AUU43783.1\|2674173_2675205_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.0e-196	98.8
AUU43602.1\|2675697_2677200_-	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
AUU43603.1\|2677722_2678037_+	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
AUU43604.1\|2678036_2679329_+	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
AUU43605.1\|2679415_2680270_-	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AUU43606.1\|2680545_2680770_-	hypothetical protein	NA	NA	NA	NA
AUU43607.1\|2680968_2681439_+	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	8.8e-82	98.1
AUU43608.1\|2681551_2681995_+	competence protein ComK	NA	NA	NA	NA
AUU43609.1\|2681981_2682425_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
AUU43610.1\|2682720_2683356_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AUU43611.1\|2683795_2684509_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AUU43612.1\|2684768_2685071_+	hypothetical protein	NA	NA	NA	NA
AUU43613.1\|2685326_2685692_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AUU43614.1\|2685688_2686042_+	camphor resistance protein CrcB	A0A2H4PQQ7	Staphylococcus_phage	3.8e-21	94.0
AUU43615.1\|2688038_2688872_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	7.8e-158	99.3
AUU43616.1\|2689083_2689992_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
AUU43617.1\|2690113_2691310_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
AUU43618.1\|2691681_2693274_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AUU43784.1\|2693651_2694398_-	dipeptidyl aminopeptidase	A0A2H4PQM6	Staphylococcus_phage	1.4e-142	98.8
AUU43619.1\|2694402_2694876_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	7.2e-84	98.7
AUU43620.1\|2694941_2695199_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AUU43621.1\|2695195_2696197_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.3e-185	97.3
AUU43622.1\|2696201_2697680_-	2-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.8e-283	97.6
AUU43785.1\|2697838_2698294_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	3.6e-80	99.3
AUU43623.1\|2698596_2699247_+	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	2.9e-51	94.0
AUU43624.1\|2699327_2700323_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	2.6e-67	97.9
AUU43625.1\|2700397_2701024_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.1e-74	79.8
AUU43626.1\|2701064_2701406_+	DUF3969 domain-containing protein	A0A2H4PQN6	Staphylococcus_phage	1.1e-54	94.7
AUU43627.1\|2701506_2702079_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	2.3e-23	93.1
AUU43628.1\|2703651_2703753_+	hypothetical protein	NA	NA	NA	NA
AUU43629.1\|2704828_2706058_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	4.0e-134	64.7
AUU43630.1\|2706050_2707790_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	2.4e-289	100.0
AUU43631.1\|2707770_2707905_-	hypothetical protein	NA	NA	NA	NA
AUU43632.1\|2707967_2708687_-\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.9e-131	99.6
AUU43633.1\|2708788_2708896_+	hypothetical protein	NA	NA	NA	NA
AUU43634.1\|2708844_2709564_-\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
AUU43635.1\|2709684_2710404_-\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.3e-129	98.7
AUU43636.1\|2710461_2711184_-\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	3.5e-130	98.3
AUU43637.1\|2711308_2712016_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	7.9e-127	97.0
AUU43638.1\|2712451_2712670_-	hypothetical protein	NA	NA	NA	NA
AUU43639.1\|2712979_2713561_+	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	9.6e-54	64.8
AUU43640.1\|2714033_2714252_-	hypothetical protein	A0A2H4PQH0	Staphylococcus_phage	2.0e-25	80.6
AUU43641.1\|2714507_2714981_+	hypothetical protein	NA	NA	NA	NA
AUU43642.1\|2714985_2715777_+	DUF1828 domain-containing protein	NA	NA	NA	NA
AUU43643.1\|2716146_2717130_-	bi-component leukocidin LukED subunit D	A0A2H4PQH7	Staphylococcus_phage	1.8e-185	99.4
AUU43644.1\|2717131_2718067_-	beta-channel forming cytolysin	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0

DBSCAN-SWA_9

2724268 : 2728515

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU43651.1\|2724268_2725024_-	exotoxin	A0A075M4C7	Staphylococcus_phage	6.0e-40	41.4
AUU43652.1\|2725062_2725458_-	enterotoxin	A0A097PAT7	Streptococcus_pyogenes_phage	1.5e-26	50.4
AUU43653.1\|2725432_2725834_-	enterotoxin	A0A097PAT7	Streptococcus_pyogenes_phage	1.5e-10	37.9
AUU43654.1\|2725987_2726716_-	exotoxin	A0A1X9H080	Staphylococcus_phage	1.1e-27	39.2
AUU43655.1\|2726750_2727470_-	exotoxin	A0A1X9H080	Staphylococcus_phage	6.8e-25	35.3
AUU43656.1\|2727750_2728515_-	exotoxin	A0A1X9H080	Staphylococcus_phage	2.3e-31	37.1

Anti-CRISPR protein detection

Acr_ID: CP026063.1|AUU42577.1|1595805_1595907_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP026063.1|AUU42577.1|1595805_1595907_+|hypothetical-protein

1595805_1595907_+

33 aa aa

1591979-1606620

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP026063_8	Orphan	8.1\|1642026\|22\|CP026063\|CRT	1642026-1642047	22	1593109-1593130	0
CP026063_8	Orphan	8.3\|1642143\|22\|CP026063\|CRT	1642143-1642164	22	1593109-1593130	0
CP026063_8	Orphan	8.2\|1642084\|23\|CP026063\|CRT	1642084-1642106	23	1594081-1594059	1
CP026063_8	Orphan	8.4\|1642201\|23\|CP026063\|CRT	1642201-1642223	23	1594081-1594059	1
CP026063_8	Orphan	8.2\|1642084\|23\|CP026063\|CRT	1642084-1642106	23	1594359-1594337	1
CP026063_8	Orphan	8.4\|1642201\|23\|CP026063\|CRT	1642201-1642223	23	1594359-1594337	1

1. spacer 8.1|1642026|22|CP026063|CRT matches to CP026063 position: 1593109-1593130, mismatch: 0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

2. spacer 8.3|1642143|22|CP026063|CRT matches to CP026063 position: 1593109-1593130, mismatch: 0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

3. spacer 8.2|1642084|23|CP026063|CRT matches to CP026063 position: 1594081-1594059, mismatch: 1

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

4. spacer 8.4|1642201|23|CP026063|CRT matches to CP026063 position: 1594081-1594059, mismatch: 1

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

5. spacer 8.2|1642084|23|CP026063|CRT matches to CP026063 position: 1594359-1594337, mismatch: 1

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

6. spacer 8.4|1642201|23|CP026063|CRT matches to CP026063 position: 1594359-1594337, mismatch: 1

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026063

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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