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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP026960 Staphylococcus aureus strain FDAARGOS_15 chromosome, complete genome 10 crisprs cas3,DEDDh,DinG,csa3,WYL 10 3 10 0

Results visualization

1. CP026960
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026960_1 56167-56265 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026960_2 198396-198477 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026960_3 247251-247533 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026960_4 380935-381022 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026960_5 1161612-1161822 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026960_6 1360509-1360587 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026960_7 1552585-1552674 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026960_8 1676510-1676703 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026960_9 2557525-2557625 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026960_10 2792806-2792898 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP026960_2 2.1|198420|34|CP026960|CRISPRCasFinder 198420-198453 34 CP026960.1 717915-717948 0 1.0
CP026960_2 2.1|198420|34|CP026960|CRISPRCasFinder 198420-198453 34 CP026960.1 806357-806390 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 149675-149694 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 149730-149749 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 155335-155354 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 155393-155412 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 155451-155470 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 198474-198493 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 266932-266951 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 390918-390937 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 717816-717835 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 806470-806489 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 982833-982852 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 1161536-1161555 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 1361939-1361958 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 1868354-1868373 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 2119300-2119319 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 2277119-2277138 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 2420317-2420336 0 1.0
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 2503213-2503232 0 1.0
CP026960_8 8.2|1676589|36|CP026960|CRT 1676589-1676624 36 CP026960.1 509707-509742 0 1.0
CP026960_3 3.1|247281|26|CP026960|CRT 247281-247306 26 CP026960.1 155120-155145 1 0.962
CP026960_3 3.1|247281|26|CP026960|CRT 247281-247306 26 CP026960.1 247225-247250 1 0.962
CP026960_3 3.3|247395|26|CP026960|CRT 247395-247420 26 CP026960.1 155176-155201 1 0.962
CP026960_3 3.3|247395|26|CP026960|CRT 247395-247420 26 CP026960.1 155232-155257 1 0.962
CP026960_5 5.1|1161650|21|CP026960|CRT 1161650-1161670 21 CP026960.1 1161591-1161611 1 0.952
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 162541-162560 1 0.95
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 509711-509730 1 0.95
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 767142-767161 1 0.95
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 1016799-1016818 1 0.95
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 1371288-1371307 1 0.95
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 2420371-2420390 1 0.95
CP026960_5 5.3|1161767|18|CP026960|CRT 1161767-1161784 18 CP026960.1 1161594-1161611 1 0.944
CP026960_6 6.1|1360532|33|CP026960|CRISPRCasFinder 1360532-1360564 33 CP026960.1 155156-155188 1 0.97
CP026960_6 6.1|1360532|33|CP026960|CRISPRCasFinder 1360532-1360564 33 CP026960.1 155212-155244 1 0.97
CP026960_6 6.1|1360532|33|CP026960|CRISPRCasFinder 1360532-1360564 33 CP026960.1 717870-717902 1 0.97
CP026960_6 6.1|1360532|33|CP026960|CRISPRCasFinder 1360532-1360564 33 CP026960.1 982882-982914 1 0.97
CP026960_6 6.1|1360532|33|CP026960|CRISPRCasFinder 1360532-1360564 33 CP026960.1 1953925-1953957 1 0.97
CP026960_8 8.2|1676589|36|CP026960|CRT 1676589-1676624 36 CP026960.1 1161532-1161567 1 0.972
CP026960_3 3.1|247281|26|CP026960|CRT 247281-247306 26 CP026960.1 118540-118565 2 0.923
CP026960_3 3.1|247281|26|CP026960|CRT 247281-247306 26 CP026960.1 509749-509774 2 0.923
CP026960_3 3.1|247281|26|CP026960|CRT 247281-247306 26 CP026960.1 2119200-2119225 2 0.923
CP026960_3 3.1|247281|26|CP026960|CRT 247281-247306 26 CP026960.1 2119256-2119281 2 0.923
CP026960_3 3.3|247395|26|CP026960|CRT 247395-247420 26 CP026960.1 2503082-2503107 2 0.923
CP026960_5 5.2|1161709|20|CP026960|CRT 1161709-1161728 20 CP026960.1 123140-123159 2 0.9
CP026960_6 6.1|1360532|33|CP026960|CRISPRCasFinder 1360532-1360564 33 CP026960.1 806403-806435 2 0.939
CP026960_8 8.1|1676533|33|CP026960|CRT 1676533-1676565 33 CP026960.1 155156-155188 2 0.939
CP026960_8 8.1|1676533|33|CP026960|CRT 1676533-1676565 33 CP026960.1 155212-155244 2 0.939
CP026960_8 8.1|1676533|33|CP026960|CRT 1676533-1676565 33 CP026960.1 717870-717902 2 0.939
CP026960_8 8.1|1676533|33|CP026960|CRT 1676533-1676565 33 CP026960.1 806403-806435 2 0.939
CP026960_8 8.1|1676533|33|CP026960|CRT 1676533-1676565 33 CP026960.1 1953925-1953957 2 0.939
CP026960_8 8.2|1676589|36|CP026960|CRT 1676589-1676624 36 CP026960.1 982821-982856 2 0.944
CP026960_8 8.2|1676589|36|CP026960|CRT 1676589-1676624 36 CP026960.1 1371276-1371311 2 0.944
CP026960_8 8.3|1676648|33|CP026960|CRT 1676648-1676680 33 CP026960.1 155100-155132 2 0.939
CP026960_8 8.3|1676648|33|CP026960|CRT 1676648-1676680 33 CP026960.1 155156-155188 2 0.939
CP026960_8 8.3|1676648|33|CP026960|CRT 1676648-1676680 33 CP026960.1 155212-155244 2 0.939
CP026960_8 8.3|1676648|33|CP026960|CRT 1676648-1676680 33 CP026960.1 717870-717902 2 0.939
CP026960_8 8.3|1676648|33|CP026960|CRT 1676648-1676680 33 CP026960.1 1953925-1953957 2 0.939

1. spacer 2.1|198420|34|CP026960|CRISPRCasFinder matches to position: 717915-717948, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 2.1|198420|34|CP026960|CRISPRCasFinder matches to position: 806357-806390, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 5.2|1161709|20|CP026960|CRT matches to position: 149675-149694, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

4. spacer 5.2|1161709|20|CP026960|CRT matches to position: 149730-149749, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

5. spacer 5.2|1161709|20|CP026960|CRT matches to position: 155335-155354, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

6. spacer 5.2|1161709|20|CP026960|CRT matches to position: 155393-155412, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

7. spacer 5.2|1161709|20|CP026960|CRT matches to position: 155451-155470, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

8. spacer 5.2|1161709|20|CP026960|CRT matches to position: 198474-198493, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

9. spacer 5.2|1161709|20|CP026960|CRT matches to position: 266932-266951, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

10. spacer 5.2|1161709|20|CP026960|CRT matches to position: 390918-390937, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

11. spacer 5.2|1161709|20|CP026960|CRT matches to position: 717816-717835, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

12. spacer 5.2|1161709|20|CP026960|CRT matches to position: 806470-806489, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

13. spacer 5.2|1161709|20|CP026960|CRT matches to position: 982833-982852, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

14. spacer 5.2|1161709|20|CP026960|CRT matches to position: 1161536-1161555, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

15. spacer 5.2|1161709|20|CP026960|CRT matches to position: 1361939-1361958, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

16. spacer 5.2|1161709|20|CP026960|CRT matches to position: 1868354-1868373, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

17. spacer 5.2|1161709|20|CP026960|CRT matches to position: 2119300-2119319, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

18. spacer 5.2|1161709|20|CP026960|CRT matches to position: 2277119-2277138, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

19. spacer 5.2|1161709|20|CP026960|CRT matches to position: 2420317-2420336, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

20. spacer 5.2|1161709|20|CP026960|CRT matches to position: 2503213-2503232, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

21. spacer 8.2|1676589|36|CP026960|CRT matches to position: 509707-509742, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

22. spacer 3.1|247281|26|CP026960|CRT matches to position: 155120-155145, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*****************.********

23. spacer 3.1|247281|26|CP026960|CRT matches to position: 247225-247250, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

24. spacer 3.3|247395|26|CP026960|CRT matches to position: 155176-155201, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

25. spacer 3.3|247395|26|CP026960|CRT matches to position: 155232-155257, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

26. spacer 5.1|1161650|21|CP026960|CRT matches to position: 1161591-1161611, mismatch: 1, identity: 0.952

agctggccaatagtcagcttt	CRISPR spacer
agctggccaatagttagcttt	Protospacer
**************.******

27. spacer 5.2|1161709|20|CP026960|CRT matches to position: 162541-162560, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaatgaaattct	Protospacer
*********** ********

28. spacer 5.2|1161709|20|CP026960|CRT matches to position: 509711-509730, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcaaaaagaaattct	Protospacer
*******.************

29. spacer 5.2|1161709|20|CP026960|CRT matches to position: 767142-767161, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gattttcgaaaagaaattct	Protospacer
** *****************

30. spacer 5.2|1161709|20|CP026960|CRT matches to position: 1016799-1016818, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgtaaagaaattct	Protospacer
******** ***********

31. spacer 5.2|1161709|20|CP026960|CRT matches to position: 1371288-1371307, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaggaaattct	Protospacer
***********.********

32. spacer 5.2|1161709|20|CP026960|CRT matches to position: 2420371-2420390, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaaattcgaaaagaaattct	Protospacer
*** ****************

33. spacer 5.3|1161767|18|CP026960|CRT matches to position: 1161594-1161611, mismatch: 1, identity: 0.944

tggccaatagtcagcttt	CRISPR spacer
tggccaatagttagcttt	Protospacer
***********.******

34. spacer 6.1|1360532|33|CP026960|CRISPRCasFinder matches to position: 155156-155188, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

35. spacer 6.1|1360532|33|CP026960|CRISPRCasFinder matches to position: 155212-155244, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

36. spacer 6.1|1360532|33|CP026960|CRISPRCasFinder matches to position: 717870-717902, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

37. spacer 6.1|1360532|33|CP026960|CRISPRCasFinder matches to position: 982882-982914, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattatagtaagctgacttttcgtcagcttctg	Protospacer
****** **************************

38. spacer 6.1|1360532|33|CP026960|CRISPRCasFinder matches to position: 1953925-1953957, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

39. spacer 8.2|1676589|36|CP026960|CRT matches to position: 1161532-1161567, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

40. spacer 3.1|247281|26|CP026960|CRT matches to position: 118540-118565, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

41. spacer 3.1|247281|26|CP026960|CRT matches to position: 509749-509774, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

42. spacer 3.1|247281|26|CP026960|CRT matches to position: 2119200-2119225, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

43. spacer 3.1|247281|26|CP026960|CRT matches to position: 2119256-2119281, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ***.********

44. spacer 3.3|247395|26|CP026960|CRT matches to position: 2503082-2503107, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacaaagaagctgacga	Protospacer
************* ********.***

45. spacer 5.2|1161709|20|CP026960|CRT matches to position: 123140-123159, mismatch: 2, identity: 0.9

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcaaaaaggaattct	Protospacer
*******.*****.******

46. spacer 6.1|1360532|33|CP026960|CRISPRCasFinder matches to position: 806403-806435, mismatch: 2, identity: 0.939

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
******.******************* ******

47. spacer 8.1|1676533|33|CP026960|CRT matches to position: 155156-155188, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

48. spacer 8.1|1676533|33|CP026960|CRT matches to position: 155212-155244, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

49. spacer 8.1|1676533|33|CP026960|CRT matches to position: 717870-717902, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

50. spacer 8.1|1676533|33|CP026960|CRT matches to position: 806403-806435, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

51. spacer 8.1|1676533|33|CP026960|CRT matches to position: 1953925-1953957, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

52. spacer 8.2|1676589|36|CP026960|CRT matches to position: 982821-982856, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

53. spacer 8.2|1676589|36|CP026960|CRT matches to position: 1371276-1371311, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

54. spacer 8.3|1676648|33|CP026960|CRT matches to position: 155100-155132, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgactttccgccagcttctg	Protospacer
*********************.*.*********

55. spacer 8.3|1676648|33|CP026960|CRT matches to position: 155156-155188, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

56. spacer 8.3|1676648|33|CP026960|CRT matches to position: 155212-155244, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

57. spacer 8.3|1676648|33|CP026960|CRT matches to position: 717870-717902, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

58. spacer 8.3|1676648|33|CP026960|CRT matches to position: 1953925-1953957, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP026960_3 3.4|247451|53|CP026960|CRT 247451-247503 53 MG543995 Staphylococcus phage UPMK_1, partial genome 76246-76298 4 0.925
CP026960_3 3.3|247395|26|CP026960|CRT 247395-247420 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
CP026960_6 6.1|1360532|33|CP026960|CRISPRCasFinder 1360532-1360564 33 NC_021536 Synechococcus phage S-IOM18 genomic sequence 159745-159777 10 0.697

1. spacer 3.4|247451|53|CP026960|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************  

2. spacer 3.3|247395|26|CP026960|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.***************** 

3. spacer 6.1|1360532|33|CP026960|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
ttttatcgtaaggtgagttttcgtcaagcacct	Protospacer
. ********** *** *********. . *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 87231 : 95051 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 107023 : 121754 18 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 292386 : 347264 56 Streptococcus_phage(28.57%) protease,bacteriocin,holin,tRNA NA
DBSCAN-SWA_4 366159 : 374632 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 426289 : 473207 69 Staphylococcus_phage(80.0%) terminase,head,portal,capsid,holin,tail,plate NA
DBSCAN-SWA_6 954443 : 962755 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_7 1031893 : 1040936 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_8 1166709 : 1248197 80 Staphylococcus_phage(93.55%) protease,transposase,bacteriocin,tRNA NA
DBSCAN-SWA_9 1276719 : 1350557 87 Staphylococcus_phage(79.69%) terminase,head,portal,transposase,capsid,holin,tail,tRNA,plate,integrase attL 1319429:1319446|attR 1354021:1354038
DBSCAN-SWA_10 2526476 : 2545410 31 Staphylococcus_phage(90.48%) protease,terminase,coat,integrase attL 2528977:2528990|attR 2545798:2545811
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage