CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026064	Staphylococcus aureus strain NRS271 chromosome, complete genome	0 crisprs	DEDDh,cas3,WYL,csa3,DinG	0	0	14	0
CP026065	Staphylococcus aureus strain NRS271 plasmid unnamed	0 crisprs	csa3	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

165593 : 171951

Staphylococcus_phage(66.67%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU43935.1\|165593_166829_+\|transposase	transposase	A0A059NT83	Lactococcus_phage	3.3e-104	49.1
AUU43936.1\|166840_167608_+	AAA family ATPase	A0A059NT77	Lactococcus_phage	6.3e-53	44.6
AUU43937.1\|167920_168172_-	hypothetical protein	NA	NA	NA	NA
AUU43938.1\|168172_168346_-	hypothetical protein	NA	NA	NA	NA
AUU43939.1\|168300_168405_-	hypothetical protein	NA	NA	NA	NA
AUU43940.1\|168916_169102_-	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.4e-19	78.7
AUU43941.1\|169529_169640_-	hypothetical protein	NA	NA	NA	NA
AUU43942.1\|170340_170547_-	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	1.3e-13	59.7
AUU43943.1\|170840_171065_-	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	4.3e-18	71.0
AUU43944.1\|171753_171951_-	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.7e-10	48.4

DBSCAN-SWA_2

432109 : 440582

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU44184.1\|432109_432676_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.5e-30	40.7
AUU44185.1\|432678_433707_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
AUU44186.1\|433699_435184_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
AUU44187.1\|435162_437352_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.6e-141	39.8
AUU44188.1\|437344_438016_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
AUU44189.1\|438017_438281_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AUU44190.1\|438280_438985_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	6.2e-47	41.6
AUU44191.1\|438988_440113_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AUU44192.1\|440099_440582_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	4.0e-21	44.0

DBSCAN-SWA_3

459147 : 513282

Lactococcus_phage(30.0%)

transposase,bacteriocin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU44209.1\|459147_460212_+\|protease	serine protease	A0A2H4PQP7	Staphylococcus_phage	1.1e-15	31.7
AUU44210.1\|460293_461475_+\|protease	cysteine protease staphopain B	NA	NA	NA	NA
AUU44211.1\|461512_461842_+	staphostatin B	NA	NA	NA	NA
AUU44212.1\|462079_462901_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
AUU44213.1\|462893_463697_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
AUU44214.1\|463683_465357_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
AUU46448.1\|465343_466555_-	isochorismate synthase	NA	NA	NA	NA
AUU46449.1\|466658_466736_-	hypothetical protein	NA	NA	NA	NA
AUU44215.1\|466886_467825_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
AUU44216.1\|467876_468428_-	N-acetyltransferase	NA	NA	NA	NA
AUU44217.1\|468517_468808_+	NINE protein	A0A060AN66	Enterococcus_phage	5.7e-07	38.0
AUU44218.1\|468871_469003_+	hypothetical protein	NA	NA	NA	NA
AUU44219.1\|470496_470853_+	DoxX family protein	NA	NA	NA	NA
AUU44220.1\|470941_471079_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA
AUU44221.1\|471219_471510_+	hypothetical protein	NA	NA	NA	NA
AUU44222.1\|471953_472721_-	AAA family ATPase	A0A059NT77	Lactococcus_phage	6.3e-53	44.6
AUU44223.1\|472732_473968_-\|transposase	transposase	A0A059NT83	Lactococcus_phage	3.3e-104	49.1
AUU44224.1\|474085_474442_-	hypothetical protein	G3M9Y6	Bacillus_virus	5.0e-05	40.3
AUU44225.1\|474438_474759_-	hypothetical protein	NA	NA	NA	NA
AUU44226.1\|474761_476726_-	DUF1430 domain-containing protein	NA	NA	NA	NA
AUU46450.1\|476769_477042_-\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
AUU44227.1\|477985_478588_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AUU44228.1\|478602_478779_-	DUF2187 domain-containing protein	NA	NA	NA	NA
AUU44229.1\|478977_479964_+	lipoate--protein ligase	NA	NA	NA	NA
AUU44230.1\|480044_480263_-	IDEAL domain-containing protein	NA	NA	NA	NA
AUU44231.1\|480472_481042_+	competence protein ComK	NA	NA	NA	NA
AUU44232.1\|481530_483042_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
AUU44233.1\|483180_484539_-	Ktr system potassium uptake protein D	NA	NA	NA	NA
AUU44234.1\|484555_486880_-	PDZ domain-containing protein	W5SAB9	Pithovirus	2.8e-11	27.4
AUU44235.1\|487098_487902_-	hypothetical protein	S5MAL1	Bacillus_phage	1.6e-30	40.5
AUU44236.1\|488203_489766_-	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	1.7e-36	28.2
AUU44237.1\|489765_490026_-	hypothetical protein	NA	NA	NA	NA
AUU44238.1\|490006_491491_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA
AUU44239.1\|491923_493099_+	diacylglycerol beta-glucosyltransferase	NA	NA	NA	NA
AUU44240.1\|493058_494267_+	MFS transporter	NA	NA	NA	NA
AUU44241.1\|494379_494889_-	hypothetical protein	NA	NA	NA	NA
AUU44242.1\|495082_495841_-	esterase family protein	NA	NA	NA	NA
AUU44243.1\|495985_497554_-	alanine:cation symporter family protein	NA	NA	NA	NA
AUU44244.1\|497895_498981_+	AI-2E family transporter	NA	NA	NA	NA
AUU44245.1\|499177_499948_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA
AUU44246.1\|500225_502070_-	sodium:proton antiporter	NA	NA	NA	NA
AUU44247.1\|502079_503465_-	magnesium transporter	NA	NA	NA	NA
AUU44248.1\|503485_504340_-	RluA family pseudouridine synthase	NA	NA	NA	NA
AUU44249.1\|504336_505146_-	NAD(+) kinase	NA	NA	NA	NA
AUU44250.1\|505162_505798_-	GTP pyrophosphokinase	NA	NA	NA	NA
AUU44251.1\|505814_506162_-	hypothetical protein	NA	NA	NA	NA
AUU44252.1\|506347_506941_+	CYTH domain-containing protein	NA	NA	NA	NA
AUU44253.1\|507044_507410_+	globin	NA	NA	NA	NA
AUU44254.1\|507432_508239_+	DsbA family protein	NA	NA	NA	NA
AUU44255.1\|508698_510507_-	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	5.5e-47	24.5
AUU44256.1\|510554_511541_-	competence protein CoiA	NA	NA	NA	NA
AUU44257.1\|511661_512381_-	adaptor protein MecA	NA	NA	NA	NA
AUU44258.1\|512796_513282_-\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	4.9e-19	35.4

DBSCAN-SWA_4

689093 : 701360

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU44427.1\|689093_690065_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	7.8e-141	80.2
AUU44428.1\|690434_691406_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AUU44429.1\|691525_693631_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.6
AUU44430.1\|693593_693992_-	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AUU44431.1\|694141_694408_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA
AUU44432.1\|694792_695659_+	EamA/RhaT family transporter	NA	NA	NA	NA
AUU44433.1\|695678_696179_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AUU44434.1\|696516_698022_+	peptide ABC transporter permease	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AUU44435.1\|698099_698201_-	hypothetical protein	NA	NA	NA	NA
AUU44436.1\|698291_699209_+	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	6.2e-07	22.4
AUU44437.1\|699601_700144_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AUU44438.1\|700304_701360_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	1.8e-21	26.4

DBSCAN-SWA_5

713333 : 721154

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU44448.1\|713333_714485_-	aminodeoxychorismate synthase, component I	S4VNU7	Pandoravirus	1.2e-23	36.1
AUU44449.1\|714468_715062_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.7e-37	42.4
AUU44450.1\|715412_716081_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AUU44451.1\|716082_716502_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
AUU44452.1\|716505_717219_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	9.3e-51	42.7
AUU44453.1\|717317_717902_+	hypothetical protein	NA	NA	NA	NA
AUU44454.1\|718181_718622_+	hypothetical protein	NA	NA	NA	NA
AUU44455.1\|718964_719438_+	DoxX family membrane protein	NA	NA	NA	NA
AUU44456.1\|719412_720099_+	DNA-binding response regulator	NA	NA	NA	NA
AUU44457.1\|720098_721154_+	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8

DBSCAN-SWA_6

1034566 : 1051535

Staphylococcus_phage(40.0%)

capsid,integrase,terminase

attL 1031514:1031529|attR 1049125:1049140

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1031514:1031529	attL	NA	NA	NA	NA
AUU44743.1\|1034566_1035289_+	exotoxin	A0A1X9H080	Staphylococcus_phage	2.1e-26	34.9
AUU44744.1\|1035455_1036256_-	exotoxin	A0A097PAT7	Streptococcus_pyogenes_phage	4.0e-50	43.4
AUU44745.1\|1037039_1037594_+	hypothetical protein	A0A1W6JQE5	Staphylococcus_phage	1.2e-58	66.7
AUU44746.1\|1037804_1038950_-	FRG domain-containing protein	NA	NA	NA	NA
AUU46468.1\|1038930_1039524_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
AUU46469.1\|1039701_1039857_-\|terminase	terminase	Q4ZE85	Staphylococcus_phage	2.2e-21	96.0
AUU44747.1\|1039853_1040345_-	pathogenicity island protein	A0A2H4JB26	uncultured_Caudovirales_phage	3.0e-24	39.9
AUU44748.1\|1040527_1041586_-\|capsid	phage capsid protein	A0A0K2CZ99	Paenibacillus_phage	3.6e-14	26.6
AUU44749.1\|1041572_1041779_-	hypothetical protein	NA	NA	NA	NA
AUU44750.1\|1041759_1041966_-	hypothetical protein	NA	NA	NA	NA
AUU44751.1\|1042003_1042348_-	pathogenicity island protein	A0A1W6JQD5	Staphylococcus_phage	5.5e-41	65.2
AUU44752.1\|1043007_1045371_-	DNA primase	A0A2H4JCU9	uncultured_Caudovirales_phage	7.5e-137	39.3
AUU44753.1\|1045462_1045762_-	DUF1474 domain-containing protein	Q4ZE75	Staphylococcus_phage	5.9e-31	66.7
AUU44754.1\|1045762_1045987_-	hypothetical protein	A0A1W6JPA6	Staphylococcus_phage	1.5e-15	61.8
AUU44755.1\|1046172_1046433_-	hypothetical protein	NA	NA	NA	NA
AUU44756.1\|1046433_1046670_-	XRE family transcriptional regulator	Q38329	Lactococcus_phage	3.2e-08	40.0
AUU44757.1\|1046802_1047189_+	XRE family transcriptional regulator	U3PIS7	Lactobacillus_phage	3.8e-06	41.2
AUU44758.1\|1047272_1048409_+\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	1.3e-75	42.5
AUU44759.1\|1048502_1050044_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.2e-23	32.6
1049125:1049140	attR	NA	NA	NA	NA
AUU44760.1\|1050068_1051535_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.2e-96	40.5

DBSCAN-SWA_7

2187638 : 2263693

101

Staphylococcus_phage(93.59%)

capsid,tail,transposase,protease,holin,portal,head,integrase,terminase

attL 2201494:2201511|attR 2227163:2227180

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU45794.1\|2187638_2188382_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AUU45795.1\|2188558_2188843_+	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
AUU45796.1\|2188918_2190535_+	molecular chaperone GroEL	A0A240F779	uncultured_virus	5.8e-157	54.7
AUU45797.1\|2191236_2191449_+	pathogenicity island family protein	Q4ZE86	Staphylococcus_phage	1.1e-23	74.3
AUU45798.1\|2191445_2192036_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	1.2e-96	94.7
AUU46514.1\|2192353_2192791_+	hypothetical protein	NA	NA	NA	NA
AUU45799.1\|2192896_2193340_+	N-acetyltransferase	NA	NA	NA	NA
AUU45800.1\|2194182_2195490_-	TrkH family potassium uptake protein	NA	NA	NA	NA
AUU45801.1\|2195650_2196562_+	ferrichrome ABC transporter substrate-binding protein	NA	NA	NA	NA
AUU45802.1\|2196623_2197415_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AUU45803.1\|2197839_2199063_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
AUU45804.1\|2199497_2200550_+	bi-component leukocidin LukGH subunit H	A0A2I6PDF3	Staphylococcus_phage	1.3e-35	32.1
AUU45805.1\|2200571_2201588_+	bi-component leukocidin LukGH subunit G	A0A2I6PER8	Staphylococcus_phage	3.9e-26	29.3
2201494:2201511	attL	NA	NA	NA	NA
AUU45806.1\|2201825_2202650_-	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	6.8e-162	100.0
AUU45807.1\|2202706_2203744_-\|integrase	site-specific integrase	A0A1X9H022	Staphylococcus_phage	2.6e-179	100.0
AUU46515.1\|2203934_2204648_-	toxin MazF	A0A1X9H026	Staphylococcus_phage	5.0e-129	100.0
AUU45808.1\|2204725_2204908_-	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	3.4e-26	98.3
AUU45809.1\|2204978_2205164_-	hypothetical protein	U5U7D6	Staphylococcus_phage	2.3e-25	100.0
AUU45810.1\|2205380_2206235_-	restriction endonuclease	A0A1X9H037	Staphylococcus_phage	7.3e-151	100.0
AUU45811.1\|2206246_2206963_-	helix-turn-helix domain-containing protein	A0A1X9H038	Staphylococcus_phage	5.4e-131	100.0
AUU45812.1\|2207126_2207369_+	transcriptional regulator	A0A1X9H035	Staphylococcus_phage	1.6e-39	100.0
AUU45813.1\|2207381_2207828_+	hypothetical protein	A0A1W6JPI3	Staphylococcus_phage	1.9e-78	100.0
AUU45814.1\|2207842_2207983_+	hypothetical protein	A0A2I6PDT8	Staphylococcus_phage	1.9e-16	100.0
AUU45815.1\|2207975_2208185_-	hypothetical protein	A0A2I6PDR8	Staphylococcus_phage	9.1e-31	100.0
AUU45816.1\|2208241_2208991_+	oxidoreductase	A0A1W6JPN2	Staphylococcus_phage	2.0e-136	100.0
AUU45817.1\|2209003_2209264_+	transcriptional regulator	A0A2I6PDT7	Staphylococcus_phage	3.5e-40	100.0
AUU46516.1\|2209496_2209817_+	DUF771 domain-containing protein	A0A1W6JPI1	Staphylococcus_phage	7.4e-56	100.0
AUU45818.1\|2209813_2209975_+	DUF1270 domain-containing protein	Q4ZAZ7	Staphylococcus_virus	2.5e-20	100.0
AUU45819.1\|2210067_2210328_+	hypothetical protein	A0A2I6PDH1	Staphylococcus_phage	2.6e-43	100.0
AUU45820.1\|2210336_2210600_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
AUU45821.1\|2210608_2212552_+	ATPase	I1W619	Staphylococcus_phage	0.0e+00	100.0
AUU45822.1\|2212553_2213474_+	recombinase	A0A1V0E5D7	Staphylococcus_phage	1.0e-166	100.0
AUU45823.1\|2213602_2214172_+	MBL fold metallo-hydrolase	A0A2I6PDI9	Staphylococcus_phage	2.5e-86	99.4
AUU45824.1\|2214172_2214643_+	single-stranded DNA-binding protein	A0A1P8L6D9	Staphylococcus_phage	9.7e-81	99.4
AUU45825.1\|2215541_2215760_+	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
AUU45826.1\|2215768_2216173_+	RusA family crossover junction endodeoxyribonuclease	A0A0E3XBN4	Staphylococcus_phage	4.2e-72	99.3
AUU45827.1\|2216185_2216554_+	hypothetical protein	A0A0E3XD52	Staphylococcus_phage	6.7e-53	100.0
AUU45828.1\|2216557_2216800_+	hypothetical protein	R9QT89	Staphylococcus_phage	3.0e-41	100.0
AUU45829.1\|2216813_2217200_+	hypothetical protein	I1W655	Staphylococcus_phage	4.1e-69	100.0
AUU45830.1\|2217196_2217391_+	hypothetical protein	A0A2I6PE33	Staphylococcus_phage	2.5e-27	100.0
AUU45831.1\|2217387_2217837_+	hypothetical protein	A0A2I6PDH2	Staphylococcus_phage	9.3e-81	100.0
AUU45832.1\|2217833_2218118_+	hypothetical protein	E9LT36	Staphylococcus_phage	2.7e-46	100.0
AUU45833.1\|2218110_2218365_+	DUF1024 domain-containing protein	A0A2I6PDI5	Staphylococcus_phage	2.1e-37	96.4
AUU46517.1\|2218327_2218522_+	hypothetical protein	M1SVE4	Staphylococcus_phage	6.9e-25	95.2
AUU45834.1\|2218514_2219048_+	dUTP pyrophosphatase	A0A059T5A7	Staphylococcus_phage	2.1e-92	97.2
AUU45835.1\|2219084_2219372_+	DUF1381 domain-containing protein	Q4ZAB6	Staphylococcus_virus	2.4e-45	98.9
AUU45836.1\|2219364_2219601_+	hypothetical protein	A0A2I6PDD1	Staphylococcus_phage	4.8e-36	98.7
AUU45837.1\|2219584_2219980_+	hypothetical protein	A0A2I6PDC1	Staphylococcus_phage	6.9e-64	97.7
AUU45838.1\|2219976_2220126_+	transcriptional regulator	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
AUU45839.1\|2220125_2220326_+	hypothetical protein	A0A2I6PDV9	Staphylococcus_phage	1.4e-28	100.0
AUU45840.1\|2220353_2220770_+	transcriptional regulator	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
AUU45841.1\|2221001_2221301_+	HNH endonuclease	A0A1W6JPL7	Staphylococcus_phage	2.7e-52	100.0
AUU45842.1\|2221430_2221775_+	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AUU45843.1\|2221771_2223433_+\|terminase	terminase large subunit	Q8LTH3	Staphylococcus_phage	0.0e+00	99.8
AUU45844.1\|2223448_2224612_+\|portal	phage portal protein	A0A1W6JPQ9	Staphylococcus_phage	1.8e-216	100.0
AUU45845.1\|2224595_2225333_+\|protease	Clp protease ClpP	A0A1W6JPK0	Staphylococcus_phage	1.8e-129	100.0
AUU45846.1\|2225355_2226501_+\|capsid	phage major capsid protein	A0A1W6JPL4	Staphylococcus_phage	1.9e-215	100.0
AUU45847.1\|2226520_2226805_+	hypothetical protein	A0A1W6JPL8	Staphylococcus_phage	2.3e-45	100.0
AUU45848.1\|2226794_2227079_+\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
AUU45849.1\|2227062_2227425_+\|head,tail	phage head-tail adapter protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
2227163:2227180	attR	NA	NA	NA	NA
AUU45850.1\|2227421_2227826_+	hypothetical protein	A0A1W6JPJ1	Staphylococcus_phage	2.5e-69	100.0
AUU45851.1\|2227822_2228230_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
AUU45852.1\|2228230_2228872_+\|tail	phage tail protein	A0A1W6JPP5	Staphylococcus_phage	1.1e-119	100.0
AUU46518.1\|2228832_2229138_+	hypothetical protein	A0A075LYE8	Staphylococcus_phage	1.5e-29	93.2
AUU45853.1\|2229189_2229540_+	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
AUU45854.1\|2229784_2234314_+\|tail	phage tail tape measure protein	A0EX03	Staphylococcus_phage	0.0e+00	96.8
AUU45855.1\|2234310_2235795_+\|tail	phage tail protein	A0A068A242	Staphylococcus_phage	2.0e-297	99.8
AUU45856.1\|2235810_2239596_+	hypothetical protein	A0A1X9H0H3	Staphylococcus_phage	0.0e+00	98.4
AUU45857.1\|2239585_2239738_+	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
AUU45858.1\|2239784_2240072_+	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
AUU45859.1\|2240129_2240426_+	DUF2951 domain-containing protein	D2JLG2	Staphylococcus_phage	2.9e-46	100.0
AUU45860.1\|2240575_2240752_+\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
AUU45861.1\|2240804_2240912_-	hypothetical protein	NA	NA	NA	NA
AUU45862.1\|2240963_2241218_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AUU45863.1\|2241229_2241985_+	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	2.2e-151	99.6
AUU45864.1\|2242175_2242667_+	staphylokinase	A0A1X9H028	Staphylococcus_phage	1.2e-86	99.4
AUU45865.1\|2243193_2243652_+	amidase	R9QTN8	Staphylococcus_phage	4.9e-85	98.7
AUU45866.1\|2243746_2244196_-	chemotaxis inhibitory protein	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
AUU45867.1\|2244880_2245231_+	inhibitor	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
AUU45868.1\|2245283_2245544_-	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
AUU45869.1\|2245522_2245831_-	hypothetical protein	M9NTD8	Staphylococcus_phage	2.1e-39	100.0
AUU45870.1\|2245854_2246034_-	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
AUU45871.1\|2246405_2246606_-	hypothetical protein	A0A1P8L6A7	Staphylococcus_phage	1.0e-26	98.5
AUU45872.1\|2246991_2249040_+	MAP domain-containing protein	NA	NA	NA	NA
AUU45873.1\|2249318_2250605_-	aspartate aminotransferase	NA	NA	NA	NA
AUU45874.1\|2250804_2250903_+	hypothetical protein	NA	NA	NA	NA
AUU45875.1\|2251145_2251304_+	hypothetical protein	NA	NA	NA	NA
AUU45876.1\|2251580_2251961_+	GntR family transcriptional regulator	NA	NA	NA	NA
AUU45877.1\|2251957_2252854_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	6.5e-17	30.2
AUU45878.1\|2252854_2253535_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
AUU45879.1\|2253531_2254404_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
AUU45880.1\|2254403_2255144_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
AUU45881.1\|2255209_2255773_-	thioredoxin family protein	NA	NA	NA	NA
AUU45882.1\|2255893_2256418_+	hypothetical protein	NA	NA	NA	NA
AUU45883.1\|2256477_2257035_+	DUF1700 domain-containing protein	NA	NA	NA	NA
AUU45884.1\|2257031_2257874_+	hypothetical protein	NA	NA	NA	NA
AUU45885.1\|2257930_2258971_-	linear amide C-N hydrolase	NA	NA	NA	NA
AUU45886.1\|2259421_2259595_+	hypothetical protein	NA	NA	NA	NA
AUU45887.1\|2260101_2261253_+\|transposase	transposase	P97010	Streptococcus_pyogenes_phage	9.0e-11	31.0
AUU46519.1\|2261291_2263319_+\|transposase	transposase	NA	NA	NA	NA
AUU45888.1\|2263327_2263693_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_8

2379532 : 2387195

Staphylococcus_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU45992.1\|2379532_2380297_+	exotoxin	A0A1X9H080	Staphylococcus_phage	2.3e-31	37.1
AUU45993.1\|2380577_2381297_+	exotoxin	A0A1X9H080	Staphylococcus_phage	2.3e-25	35.8
AUU45994.1\|2381331_2382060_+	exotoxin	A0A1X9H080	Staphylococcus_phage	1.1e-27	39.2
AUU45995.1\|2382213_2382984_+	exotoxin	A0A097PAT7	Streptococcus_pyogenes_phage	6.3e-45	43.6
AUU45996.1\|2383022_2383778_+	exotoxin	A0A075M4C7	Staphylococcus_phage	6.0e-40	41.4
AUU45997.1\|2384060_2384837_+	enterotoxin	NA	NA	NA	NA
AUU45998.1\|2385054_2385240_-	hypothetical protein	NA	NA	NA	NA
AUU45999.1\|2386065_2387195_-\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	5.2e-80	54.7

DBSCAN-SWA_9

2394167 : 2413415

Staphylococcus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU46007.1\|2394167_2394272_+	hypothetical protein	A0A2H4PQU1	Staphylococcus_phage	7.2e-05	87.5
AUU46008.1\|2394445_2394670_+\|transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	6.8e-24	86.8
AUU46009.1\|2394851_2395235_+	hypothetical protein	NA	NA	NA	NA
AUU46010.1\|2395245_2395422_+	hypothetical protein	NA	NA	NA	NA
AUU46011.1\|2395423_2395609_+	hypothetical protein	NA	NA	NA	NA
AUU46012.1\|2395794_2396364_+	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	1.2e-77	95.0
AUU46013.1\|2396560_2397133_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	7.8e-24	93.1
AUU46014.1\|2397233_2397575_-	DUF3969 domain-containing protein	A0A2H4PQN6	Staphylococcus_phage	2.5e-54	92.9
AUU46015.1\|2397615_2398242_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	6.4e-88	91.8
AUU46016.1\|2398317_2399313_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	1.9e-70	95.2
AUU46524.1\|2400344_2400800_+	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	3.6e-80	99.3
AUU46017.1\|2400958_2402437_+	2-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.6e-283	97.6
AUU46018.1\|2402441_2403443_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.8e-186	97.9
AUU46019.1\|2403439_2403697_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	2.0e-40	90.6
AUU46020.1\|2403762_2404236_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	3.6e-83	98.1
AUU46525.1\|2404240_2404987_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	7.8e-141	97.6
AUU46021.1\|2405364_2406957_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
AUU46022.1\|2407327_2408521_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.2e-217	99.5
AUU46023.1\|2408645_2409554_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	2.9e-137	98.7
AUU46024.1\|2409770_2410604_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	6.0e-158	99.3
AUU46025.1\|2412699_2413053_-	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	1.9e-20	82.9
AUU46026.1\|2413049_2413415_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	4.8e-59	99.2

DBSCAN-SWA_10

2423334 : 2432338

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU46038.1\|2423334_2423730_-	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	4.5e-71	96.9
AUU46039.1\|2423747_2425040_-	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	7.5e-216	94.2
AUU46040.1\|2425039_2425354_-	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	1.3e-52	98.1
AUU46041.1\|2425880_2427383_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
AUU46042.1\|2427875_2428907_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.0e-196	98.8
AUU46043.1\|2428913_2429546_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
AUU46044.1\|2429556_2430738_+	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	1.7e-227	100.0
AUU46045.1\|2430750_2431215_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
AUU46046.1\|2431336_2432338_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7

DBSCAN-SWA_11

2435499 : 2448238

Staphylococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU46050.1\|2435499_2436063_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	2.2e-103	100.0
AUU46051.1\|2436059_2437013_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AUU46052.1\|2437123_2438305_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	7.3e-218	99.7
AUU46053.1\|2438592_2441010_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.3
AUU46054.1\|2441031_2441343_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
AUU46055.1\|2441668_2448238_+	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	1.9e-294	92.6

DBSCAN-SWA_12

2571195 : 2580238

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU46167.1\|2571195_2572200_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
AUU46168.1\|2572201_2573227_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AUU46169.1\|2573249_2574389_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AUU46170.1\|2574407_2574668_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AUU46171.1\|2574942_2577222_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AUU46172.1\|2577424_2579698_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.1e-63	29.0
AUU46173.1\|2579719_2580238_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5

DBSCAN-SWA_13

2649684 : 2658014

Caulobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU46239.1\|2649684_2651502_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	7.9e-54	36.3
AUU46240.1\|2651725_2652832_+	RNA polymerase sigma factor SigA	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AUU46241.1\|2652962_2653640_+\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
AUU46242.1\|2653642_2654743_+	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
AUU46243.1\|2654856_2656203_+	DEAD/DEAH box family ATP-dependent RNA helicase	A0A1V0SIR5	Klosneuvirus	9.1e-55	33.7
AUU46244.1\|2656212_2657103_+	endonuclease	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
AUU46245.1\|2657228_2658014_+	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3

DBSCAN-SWA_14

2713133 : 2796595

107

Staphylococcus_phage(80.52%)

capsid,tail,protease,holin,portal,head,tRNA,integrase,terminase

attL 2717054:2717071|attR 2791672:2791689

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU46310.1\|2713133_2713859_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	3.5e-45	43.0
AUU46311.1\|2713839_2715591_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.3e-21	33.6
AUU46312.1\|2715842_2716760_+	DUF1672 domain-containing protein	NA	NA	NA	NA
AUU46313.1\|2716762_2718799_+	hypothetical protein	B5WZK7	Staphylococcus_phage	4.0e-54	53.7
2717054:2717071	attL	NA	NA	NA	NA
AUU46314.1\|2718841_2720047_-\|integrase	site-specific integrase	A0A2I6PEN0	Staphylococcus_phage	7.7e-223	100.0
AUU46315.1\|2720172_2720787_+	ATPase	M9QRQ8	Staphylococcus_phage	2.5e-105	99.5
AUU46316.1\|2720783_2720930_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.2e-16	100.0
AUU46317.1\|2720966_2721149_-	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	5.3e-27	100.0
AUU46318.1\|2721219_2721951_-	peptidase S24	S4SVC5	Staphylococcus_phage	1.3e-132	99.2
AUU46319.1\|2722102_2722315_+	XRE family transcriptional regulator	A7TWF1	Staphylococcus_phage	1.6e-30	100.0
AUU46320.1\|2722362_2722806_+	hypothetical protein	A7TWF2	Staphylococcus_phage	8.9e-76	100.0
AUU46321.1\|2723010_2723223_-	uracil-DNA glycosylase	D2JGJ1	Staphylococcus_phage	7.6e-33	100.0
AUU46322.1\|2723292_2723490_+	hypothetical protein	A7TWF5	Staphylococcus_phage	4.6e-24	100.0
AUU46323.1\|2723476_2723857_-	DUF2513 domain-containing protein	Q4ZCQ5	Staphylococcus_virus	5.8e-68	100.0
AUU46324.1\|2723923_2724169_+	DUF2829 domain-containing protein	A0A2I6PF15	Staphylococcus_phage	5.1e-41	100.0
AUU46325.1\|2724137_2724503_-	hypothetical protein	A0A2I6PF07	Staphylococcus_phage	2.4e-63	100.0
AUU46326.1\|2724557_2724773_+	hypothetical protein	A0A2I6PF01	Staphylococcus_phage	1.9e-31	100.0
AUU46327.1\|2724797_2725061_+	helix-turn-helix domain-containing protein	A7TWG0	Staphylococcus_phage	5.7e-46	100.0
AUU46328.1\|2725073_2725235_+	DUF1270 domain-containing protein	A7TWM3	Staphylococcus_phage	8.6e-21	100.0
AUU46329.1\|2725313_2725637_+	TrmB family transcriptional regulator	A0A2I6PDL5	Staphylococcus_phage	1.3e-52	100.0
AUU46330.1\|2725651_2726014_+	hypothetical protein	Q4ZCP8	Staphylococcus_virus	2.2e-56	100.0
AUU46331.1\|2726010_2727177_+	DUF2800 domain-containing protein	R4WAL0	Staphylococcus_phage	7.0e-221	99.7
AUU46332.1\|2727202_2727757_+	DUF2815 domain-containing protein	M9QRS1	Staphylococcus_phage	1.4e-99	100.0
AUU46536.1\|2727825_2729778_+	DNA polymerase	Q4ZCP5	Staphylococcus_virus	0.0e+00	99.4
AUU46333.1\|2729790_2729976_+	DUF3113 domain-containing protein	A0A2I6PEM8	Staphylococcus_phage	7.0e-27	100.0
AUU46334.1\|2729975_2730377_+	PVL family protein	A0A2I6PF14	Staphylococcus_phage	3.6e-68	98.5
AUU46335.1\|2730376_2730634_+	DUF3310 domain-containing protein	A0A2I6PEN5	Staphylococcus_phage	2.6e-43	100.0
AUU46336.1\|2730636_2730837_+	hypothetical protein	A0A2I6PEM3	Staphylococcus_phage	2.5e-30	100.0
AUU46337.1\|2730851_2731094_+	hypothetical protein	A0A2D1G5G2	Staphylococcus_phage	2.8e-39	97.5
AUU46338.1\|2731108_2731357_+	DUF1024 domain-containing protein	Q9B0F3	Staphylococcus_virus	2.7e-37	97.6
AUU46339.1\|2731349_2731877_+	dUTP pyrophosphatase	A7TWB1	Staphylococcus_phage	7.8e-95	100.0
AUU46340.1\|2731913_2732150_+	DUF1381 domain-containing protein	C8CH06	Staphylococcus_phage	3.1e-35	98.7
AUU46341.1\|2732174_2732411_+	hypothetical protein	A7TWB3	Staphylococcus_phage	1.9e-37	100.0
AUU46342.1\|2732394_2732787_+	hypothetical protein	A7TWI1	Staphylococcus_phage	3.1e-64	98.5
AUU46537.1\|2732786_2732939_+	transcriptional regulator	A7TWI2	Staphylococcus_phage	1.4e-17	94.0
AUU46343.1\|2733006_2733207_+	hypothetical protein	A0A2I6PF41	Staphylococcus_phage	2.9e-26	100.0
AUU46344.1\|2733258_2735706_+	hypothetical protein	R4WAL1	Staphylococcus_phage	0.0e+00	100.0
AUU46345.1\|2735814_2735913_-	hypothetical protein	A0A2I6PDP6	Staphylococcus_phage	3.7e-11	100.0
AUU46538.1\|2736046_2736337_+	VRR-NUC domain-containing protein	A0A2I6PEN7	Staphylococcus_phage	6.5e-51	100.0
AUU46346.1\|2736317_2737685_+	ATP-dependent helicase	A0A2I6PE95	Staphylococcus_phage	1.9e-262	99.8
AUU46347.1\|2737697_2738135_+	transcriptional regulator	A0A2I6PDC2	Staphylococcus_phage	4.6e-77	100.0
AUU46348.1\|2738291_2738606_+	HNH endonuclease	A0A2I6PDC4	Staphylococcus_phage	2.5e-56	100.0
AUU46349.1\|2738734_2739040_+\|terminase	phage terminase small subunit P27 family	A0A2I6PE27	Staphylococcus_phage	2.9e-49	100.0
AUU46350.1\|2739029_2740721_+\|terminase	terminase large subunit	A0A1X9IGU0	Staphylococcus_phage	0.0e+00	99.8
AUU46351.1\|2740725_2741964_+\|portal	phage portal protein	A0A2I6PER5	Staphylococcus_phage	6.9e-235	100.0
AUU46352.1\|2741947_2742721_+\|protease	Clp protease ClpP	A0A2I6PEQ7	Staphylococcus_phage	2.4e-137	100.0
AUU46353.1\|2742732_2743896_+\|capsid	phage major capsid protein	A0A2I6PEQ3	Staphylococcus_phage	2.1e-217	99.7
AUU46354.1\|2743964_2744243_+\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
AUU46355.1\|2744254_2744587_+	hypothetical protein	A0A2I6PES3	Staphylococcus_phage	4.1e-57	100.0
AUU46356.1\|2744583_2744985_+	hypothetical protein	A0A2I6PF54	Staphylococcus_phage	8.1e-68	100.0
AUU46357.1\|2744985_2745381_+	DUF3168 domain-containing protein	A0A2I6PEQ4	Staphylococcus_phage	8.8e-67	100.0
AUU46358.1\|2745415_2746057_+\|tail	phage tail protein	A0A2I6PEP6	Staphylococcus_phage	5.9e-121	100.0
AUU46359.1\|2746148_2746604_+\|tail	phage tail protein	A0A2I6PER6	Staphylococcus_phage	5.7e-78	100.0
AUU46360.1\|2746661_2747012_+	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	1.1e-55	100.0
AUU46361.1\|2747053_2747212_+	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
AUU46362.1\|2747225_2753426_+\|tail	phage tail tape measure protein	A0A1X9IGU9	Staphylococcus_phage	0.0e+00	100.0
AUU46363.1\|2753425_2754250_+\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	7.8e-158	99.6
AUU46364.1\|2754258_2755842_+	peptidase	A0A2I6PEQ5	Staphylococcus_phage	3.5e-308	99.8
AUU46365.1\|2755841_2756132_+	hypothetical protein	U5U457	Staphylococcus_phage	2.1e-49	100.0
AUU46366.1\|2756147_2758058_+	hypothetical protein	A0A2I6PEQ9	Staphylococcus_phage	0.0e+00	100.0
AUU46367.1\|2758057_2759524_+	DUF2479 domain-containing protein	A0A2I6PES7	Staphylococcus_phage	1.5e-273	100.0
AUU46368.1\|2759523_2759913_+	DUF2977 domain-containing protein	A0A2I6PER1	Staphylococcus_phage	4.9e-62	99.2
AUU46369.1\|2759905_2760070_+	XkdX family protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
AUU46370.1\|2760115_2760415_+	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AUU46371.1\|2760567_2760744_+\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
AUU46372.1\|2760796_2760904_-	hypothetical protein	NA	NA	NA	NA
AUU46373.1\|2760955_2761210_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AUU46374.1\|2761221_2761977_+	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AUU46375.1\|2762337_2764242_+	adenine methyltransferase	A0A1W6JNK1	Staphylococcus_phage	0.0e+00	84.5
AUU46376.1\|2764228_2765239_+	restriction endonuclease subunit S	A0A1W6JNN3	Staphylococcus_phage	2.7e-64	41.3
AUU46377.1\|2765285_2765633_+	hypothetical protein	Q4ZCJ7	Staphylococcus_virus	1.5e-25	98.2
AUU46378.1\|2765723_2766659_+	DUF1672 domain-containing protein	NA	NA	NA	NA
AUU46379.1\|2766642_2766789_+	hypothetical protein	NA	NA	NA	NA
AUU46380.1\|2766863_2767772_+	DUF1672 domain-containing protein	NA	NA	NA	NA
AUU46381.1\|2768226_2769171_+	DUF1672 domain-containing protein	NA	NA	NA	NA
AUU46382.1\|2769572_2770118_+	ECF transporter S component	NA	NA	NA	NA
AUU46383.1\|2770223_2770472_-	ferredoxin	A0A127AYY7	Bacillus_phage	8.3e-15	48.0
AUU46384.1\|2770579_2771533_+	hypothetical protein	NA	NA	NA	NA
AUU46385.1\|2771522_2772902_+	ATP-dependent DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	6.4e-56	33.3
AUU46386.1\|2773054_2774506_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
AUU46387.1\|2774631_2774748_+	hypothetical protein	NA	NA	NA	NA
AUU46388.1\|2774908_2775877_+	FAD-binding protein	NA	NA	NA	NA
AUU46389.1\|2776009_2776978_-	asparaginase	NA	NA	NA	NA
AUU46390.1\|2777054_2777714_+	cytidylate kinase	NA	NA	NA	NA
AUU46391.1\|2777744_2777861_+	hypothetical protein	NA	NA	NA	NA
AUU46392.1\|2777886_2778024_-	hypothetical protein	NA	NA	NA	NA
AUU46393.1\|2777977_2778169_+	hypothetical protein	NA	NA	NA	NA
AUU46394.1\|2778425_2779601_+	30S ribosomal protein S1	NA	NA	NA	NA
AUU46395.1\|2779822_2781133_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
AUU46396.1\|2781149_2782148_+	glycerol-3-phosphate dehydrogenase (NAD(P)(+))	NA	NA	NA	NA
AUU46397.1\|2782318_2782591_+	DNA-binding protein HU	A7KV42	Bacillus_phage	4.2e-28	73.3
AUU46398.1\|2782780_2783095_-	hypothetical protein	NA	NA	NA	NA
AUU46399.1\|2783021_2783594_+	heptaprenyl pyrophosphate synthase subunit A	NA	NA	NA	NA
AUU46400.1\|2783596_2784322_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA
AUU46539.1\|2784338_2785283_+	heptaprenyl diphosphate synthase	A0A1V0SE37	Indivirus	1.3e-10	24.4
AUU46401.1\|2785374_2785824_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.4e-28	43.8
AUU46402.1\|2786033_2786234_+	hypothetical protein	NA	NA	NA	NA
AUU46403.1\|2786620_2787787_+	chorismate synthase	A0A291AU41	Pandoravirus	2.0e-34	32.1
AUU46404.1\|2787812_2788877_+	3-dehydroquinate synthase	NA	NA	NA	NA
AUU46405.1\|2788886_2790185_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
AUU46406.1\|2790191_2791436_+	tetratricopeptide repeat protein	NA	NA	NA	NA
AUU46407.1\|2791449_2792025_+	IDEAL domain-containing protein	G3MAV7	Bacillus_virus	7.9e-08	26.7
2791672:2791689	attR	NA	NA	NA	NA
AUU46408.1\|2792014_2792602_+	DUF1405 domain-containing protein	NA	NA	NA	NA
AUU46540.1\|2792673_2793354_+	zinc metallopeptidase	NA	NA	NA	NA
AUU46409.1\|2793690_2794008_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
AUU46410.1\|2794245_2795388_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA
AUU46411.1\|2795392_2796595_+\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	1.9e-35	43.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP026065

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

34038 : 40940

Staphylococcus_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU46570.1\|34038_34434_-	protein ArsC	A0A2H4PQT9	Staphylococcus_phage	8.5e-62	86.3
AUU46571.1\|34451_35741_-	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	6.6e-188	81.4
AUU46572.1\|35740_36055_-	transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	4.7e-39	73.1
AUU46573.1\|36770_36983_+	hypothetical protein	NA	NA	NA	NA
AUU46574.1\|37017_37692_-\|transposase	IS6-like element ISSau6 family transposase	A0A0N9RU54	Staphylococcus_phage	4.8e-113	87.9
AUU46575.1\|37786_38164_+\|transposase	transposase	NA	NA	NA	NA
AUU46576.1\|38401_38767_+	ArsR family transcriptional regulator	E4ZFI8	Streptococcus_phage	8.5e-24	47.8
AUU46577.1\|38759_40940_+	cadmium-transporting ATPase	E4ZFI9	Streptococcus_phage	9.3e-251	63.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026064

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP026065

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection