CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP026969	Staphylococcus aureus strain FDAARGOS_1 plasmid unnamed1	0 crisprs	NA	0	0	0
CP026970	Staphylococcus aureus strain FDAARGOS_1 plasmid unnamed2	0 crisprs	NA	0	0	0
CP026968	Staphylococcus aureus strain FDAARGOS_1 chromosome, complete genome	7 crisprs	cas3,DEDDh,DinG,csa3,RT,WYL	5	2	9
CP026972	Staphylococcus aureus strain FDAARGOS_1 plasmid unnamed4	0 crisprs	NA	0	0	0
CP026971	Staphylococcus aureus strain FDAARGOS_1 plasmid unnamed3	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP026968_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026968_1

282408-282509

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026968_1

>merge|CP026968|1|282408-282509|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>CP026968|1|1|282408-282509|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP026968.1\|AVG68380.1\|276724_278248_-\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
CP026968.1\|AVG68391.1\|287208_288675_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
CP026968.1\|AVG68379.1\|275654_276281_-\|NDxxF-motif-lipoprotein	unknown	unknown	gnl\|CDD\|380196
CP026968.1\|AVG68389.1\|285324_285903_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
CP026968.1\|AVG68381.1\|278263_278833_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
CP026968.1\|AVG68378.1\|275001_275385_-\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG68384.1\|281632_281731_+\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG68377.1\|274354_274936_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
CP026968.1\|AVG68382.1\|279324_280080_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
CP026968.1\|AVG68393.1\|290353_290890_-\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG68387.1\|283599_284262_-\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG68395.1\|292384_292657_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225511
CP026968.1\|AVG68390.1\|285902_287171_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
CP026968.1\|AVG68392.1\|288699_290241_+\|GMP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|234614
CP026968.1\|AVG68376.1\|273967_274177_-\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG68388.1\|284404_284812_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
CP026968.1\|AVG68394.1\|291281_291986_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
CP026968.1\|AVG68386.1\|282525_283482_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
CP026968.1\|AVG68383.1\|280159_281548_-\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
CP026968.1\|AVG68385.1\|281941_282199_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP026968.1\|AVG68380.1\|276724_278248_-\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
CP026968.1\|AVG68379.1\|275654_276281_-\|NDxxF-motif-lipoprotein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.15385e-71
CP026968.1\|AVG68389.1\|285324_285903_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.01486e-119
CP026968.1\|AVG68381.1\|278263_278833_-\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
CP026968.1\|AVG68382.1\|279324_280080_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	4.50551e-88
CP026968.1\|AVG68377.1\|274354_274936_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.4566e-49
CP026968.1\|AVG68391.1\|287208_288675_+\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
CP026968.1\|AVG68388.1\|284404_284812_-\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.17298e-12
CP026968.1\|AVG68395.1\|292384_292657_-\|hypothetical-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.23077e-11
CP026968.1\|AVG68392.1\|288699_290241_+\|GMP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
CP026968.1\|AVG68390.1\|285902_287171_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	5.74823e-170
CP026968.1\|AVG68386.1\|282525_283482_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00265416
CP026968.1\|AVG68383.1\|280159_281548_-\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
CP026968.1\|AVG68394.1\|291281_291986_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	5.38181e-08

>CP026968.1|AVG68385.1|281941_282199_-|hypothetical-protein
MLVNDESHKGTLIFTFTTNAFFLKQKYLFTVAFELPPAHTNPQKMLILIRQNFLQRVCSKRLFKVDHLLSFYSINMRLAIFIKPS
>CP026968.1|AVG68384.1|281632_281731_+|hypothetical-protein
MQLNVNMMKFDRWHKGICKQIVLNLVEKGEKG
>CP026968.1|AVG68383.1|280159_281548_-|L-cystine-transporter
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLVYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFESNDNAALTSH
>CP026968.1|AVG68382.1|279324_280080_+|NADPH-dependent-oxidoreductase
MSDYVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>CP026968.1|AVG68381.1|278263_278833_-|peroxiredoxin
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>CP026968.1|AVG68380.1|276724_278248_-|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDEKSKELKELLTEISDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKNLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMSTGEEHLLNLDGIFVQIGLLPNTSWLKDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>CP026968.1|AVG68379.1|275654_276281_-|NDxxF-motif-lipoprotein
MKKRLLLSTFLASALILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>CP026968.1|AVG68378.1|275001_275385_-|hypothetical-protein
MKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIILMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFISAIITLAIGGKSVDKNDSH
>CP026968.1|AVG68377.1|274354_274936_+|histidine-phosphatase-family-protein
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYEKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAHQVVIRCLMVYFNKVSREEAVDLKVENCKPYIIE
>CP026968.1|AVG68376.1|273967_274177_-|hypothetical-protein
MTTQSFIFMNIILLDGATQRHPFFICQILAFLFPKFPHINLLLFYPILSTFSNIIIHIDHFHANKKDDN
>CP026968.1|AVG68386.1|282525_283482_-|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKVLAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNENAAETSNKEATVDADAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>CP026968.1|AVG68387.1|283599_284262_-|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>CP026968.1|AVG68388.1|284404_284812_-|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHKEVQEHNSAYEEIDITHFAEASKGPKA
>CP026968.1|AVG68389.1|285324_285903_+|xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE
>CP026968.1|AVG68390.1|285902_287171_+|purine-permease
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILVLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>CP026968.1|AVG68391.1|287208_288675_+|IMP-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>CP026968.1|AVG68392.1|288699_290241_+|GMP-synthase-(glutamine-hydrolyzing)
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCKGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>CP026968.1|AVG68393.1|290353_290890_-|hypothetical-protein
MHNKNEFNKKLKDFIGSDKRMALVKGYINEYKLTTVLRALNNSDYTKGTIHTRSIGNLKQIVDNRIIPKNITQNKIFKLSNLTLEVNLYERNTIYHGDFAIYYPVESALIIETDTPRLINHINNNPVQKIFIITTNDWSFNTLELEKIVDETIIYDLKQEDPKQYEILYKNKHGKLPY
>CP026968.1|AVG68394.1|291281_291986_-|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYKSFSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESVLNLTATDLKKQIIDISSKVQALTQKYRDIDIKLSTEDKKLLSNLNQKANELYRVIGVYSKHKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
>CP026968.1|AVG68395.1|292384_292657_-|hypothetical-protein
MTKERRTFSSEFKLQMVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI

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Crispr_ID: CP026968_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026968_3

693687-693766

Orphan

Consensus_repeat	Method
CAGCTTCTGTGTTGGGGCCCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026968_3

>merge|CP026968|3|693687-693766|CRISPRCasFinder
CAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCACC

>CP026968|3|3|693687-693766|CRISPRCasFinder
CAGCTTCTGTGTTGGGGCCCCGCC	AACTTGCACATTATTGTAAGCTGACTTTCCGC
CAGCTTCTGTGTTGGGGCCCCACC

Protein	Signature genes	Signature genes Name	Protein_function
CP026968.1\|AVG68758.1\|695268_696279_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
CP026968.1\|AVG68761.1\|698493_700011_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
CP026968.1\|AVG68751.1\|687767_688763_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
CP026968.1\|AVG68747.1\|683649_685089_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276808
CP026968.1\|AVG68762.1\|700140_701445_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP026968.1\|AVG68749.1\|686480_686666_-\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG68759.1\|696417_697608_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
CP026968.1\|AVG68750.1\|686859_687771_+\|RNase-adaptor-protein-RapZ	unknown	unknown	gnl\|CDD\|224574
CP026968.1\|AVG68755.1\|692816_693446_+\|DUF4887-domain-containing-protein	unknown	unknown	gnl\|CDD\|234750
CP026968.1\|AVG68746.1\|683156_683642_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053
CP026968.1\|AVG68765.1\|702657_703398_+\|carboxylesterase	unknown	unknown	gnl\|CDD\|224561
CP026968.1\|AVG68753.1\|690381_690969_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
CP026968.1\|AVG68754.1\|691211_692114_-\|epimerase	unknown	unknown	gnl\|CDD\|224015
CP026968.1\|AVG68757.1\|694202_695216_+\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
CP026968.1\|AVG68748.1\|685155_686091_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP026968.1\|AVG68752.1\|688873_689818_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
CP026968.1\|AVG68764.1\|702308_702542_+\|protein-export-membrane-protein-SecG	unknown	unknown	gnl\|CDD\|224233
CP026968.1\|AVG68763.1\|701783_702242_+\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG68766.1\|703431_705804_+\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
CP026968.1\|AVG68760.1\|697729_698491_+\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589

Protein	Function_ID	Function_description	E-value
CP026968.1\|AVG68758.1\|695268_696279_+\|aldehyde-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
CP026968.1\|AVG68761.1\|698493_700011_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
CP026968.1\|AVG68751.1\|687767_688763_+\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP026968.1\|AVG68747.1\|683649_685089_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.14043e-06
CP026968.1\|AVG68762.1\|700140_701445_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP026968.1\|AVG68759.1\|696417_697608_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
CP026968.1\|AVG68750.1\|686859_687771_+\|RNase-adaptor-protein-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP026968.1\|AVG68755.1\|692816_693446_+\|DUF4887-domain-containing-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	5.80381e-05
CP026968.1\|AVG68746.1\|683156_683642_+\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
CP026968.1\|AVG68765.1\|702657_703398_+\|carboxylesterase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	1.30175e-132
CP026968.1\|AVG68753.1\|690381_690969_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP026968.1\|AVG68754.1\|691211_692114_-\|epimerase	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	6.73087e-155
CP026968.1\|AVG68757.1\|694202_695216_+\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.39665e-92
CP026968.1\|AVG68748.1\|685155_686091_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP026968.1\|AVG68752.1\|688873_689818_+\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP026968.1\|AVG68764.1\|702308_702542_+\|protein-export-membrane-protein-SecG	gnl\|CDD\|224233	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion].	6.41939e-15
CP026968.1\|AVG68766.1\|703431_705804_+\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
CP026968.1\|AVG68760.1\|697729_698491_+\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.84083e-146

>CP026968.1|AVG68755.1|692816_693446_+|DUF4887-domain-containing-protein
MSNQNYDYNKNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFAYVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQANQYQQLPQQNQYQYVPPQQQAPTKQRPAKEENDDKASKDESKDKDDNASQDKSDDNQKKTDDNKQPAQPKPQPQQPTPKPNNNQQNNQSNQQAKPQAPQQNSQSTTNKQNNANDK
>CP026968.1|AVG68754.1|691211_692114_-|epimerase
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGMILSNEGGALQTMKLPYKYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE
>CP026968.1|AVG68753.1|690381_690969_+|ATP-dependent-Clp-protease-proteolytic-subunit
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP026968.1|AVG68752.1|688873_689818_+|DNA-binding-protein-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP026968.1|AVG68751.1|687767_688763_+|YvcK-family-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP026968.1|AVG68750.1|686859_687771_+|RNase-adaptor-protein-RapZ
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP026968.1|AVG68749.1|686480_686666_-|hypothetical-protein
MKMRLQQAFFNSSQGPQHREIGFPISTDNASWGVGPNKENFEKKFYRQCELGCGPQHRSLR
>CP026968.1|AVG68748.1|685155_686091_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP026968.1|AVG68747.1|683649_685089_+|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP026968.1|AVG68746.1|683156_683642_+|acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP026968.1|AVG68757.1|694202_695216_+|sugar-binding-transcriptional-regulator
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
>CP026968.1|AVG68758.1|695268_696279_+|aldehyde-dehydrogenase
MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
>CP026968.1|AVG68759.1|696417_697608_+|phosphoglycerate-kinase
MAKKIVSDLDLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK
>CP026968.1|AVG68760.1|697729_698491_+|triose-phosphate-isomerase
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK
>CP026968.1|AVG68761.1|698493_700011_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MAKKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH
>CP026968.1|AVG68762.1|700140_701445_+|enolase
MPIITDVYAREVLDSRGNPTVEVEVLTESGAFGRALVPSGASTGEHEAVELRDGDKSRYLGKGVTKAVENVNEIIAPEIIEGEFSVLDQVSIDKMMIALDGTPNKGKLGANAILGVSIAVARAAADLLGQPLYKYLGGFNGKQLPVPMMNIVNGGSHSDAPIAFQEFMILPVGATTFKESLRWGTEIFHNLKSILSKRGLETAVGDEGGFAPKFEGTEDAVETIIQAIEAAGYKPGEEVFLGFDCASSEFYENGVYDYSKFEGEHGAKRTAAEQVDYLEQLVDKYPIITIEDGMDENDWDGWKQLTERIGDRVQLVGDDLFVTNTEILAKGIENGIGNSILIKVNQIGTLTETFDAIEMAQKAGYTAVVSHRSGETEDTTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDELFETAKYDGIKSFYNLDK
>CP026968.1|AVG68763.1|701783_702242_+|hypothetical-protein
MADRTNKEIKTGRFIATASIVFSILLIIHYFVSLDNATAKALLNLTNQNTSDKAIDYILNSFRFTGIMYILAYLAGFITFWNRHTYVWWFMFAVYVSNSLFTLINLSITIQAIKAAHGAYLTLPILIVIIGSVALAIYMLVVSIKRKSTFNR
>CP026968.1|AVG68764.1|702308_702542_+|protein-export-membrane-protein-SecG
MHTFLIVLLIIDCIALITVVLLQEGKSSGLSGAISGGAEQLFGKQKQRGVDLFLNRLTIILSILFFVLMICISYLGM
>CP026968.1|AVG68765.1|702657_703398_+|carboxylesterase
MQIKLPKPFFFEEGKRAVLLLHGFTGNSSDVRQLGRFLQKKGYTSYAPQYEGHAAPPEEILKSSPFVWFKDALDGYDYLVEQGYDEIVVAGLSLGGDFALKLSLNRDVKGIVTMCAPMGGKTEGAIYEGFLEYARNFKKYEGKNQETIDNEMDHFKPTETLKELSEALDTIKDQVDEVFDPILVIQVENDNMIDPQSANYIYDHVDSDDKDIKWYSQSGHVITIDKEKEQVFEDIYQFLESLDWSE
>CP026968.1|AVG68766.1|703431_705804_+|ribonuclease-R
MNLKQSIEEIINQPEYEPMSVSDFQDALGLSSADSFRDLIKVLVELEQSGLIERTKTDRYQKKHSSKGHSKLIKGTLSQNKKGFAFLRPEDEDMEDIFIPPTKINRALDGDTVIVEIHQSKGEHKGKIEGEVKSIEKHSVTQVVGTYSEARHFGFVIPDDKRIMQDIFIPKGQSLGAVDGHKVLVQITKYADGSDNPEGHISAILGHKNDPGVDILSIIYQHGIEIEFPDEVLQEAEAVPDHIENTEIKGRHDLRDELTITIDGADAKDLDDAISVKKLANGNTQLTVSIADVSYYVTEDSALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPHVDRLTLSCRMEIDASGRVVKHEIFDSVIHSDYRMTYDAVNQIITEKDPNIREQYKEITPMLDLAQDLSNRLIQMRKRRGEIDFDISEAKVLVNEVGIPTDVQLRQRGEGERLIESFMLIANETVAEHFSKLNVPFIYRVHEQPKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQKVQEEVEGRPEQMVISTMMLRSMQQAHYDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIEKSMDNKEVKRWEDKLPELAEHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHIANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDERLIDFQIVGMPLPKNDRSQRPARGKTIQAKTRGKSLDKSKSDDKGRKKKGKQRKGKNQRNNDKSGNSKHKPFYKDKSVKKKARRKKK

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Crispr_ID: CP026968_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026968_4

729870-729951

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026968_4

>merge|CP026968|4|729870-729951|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGAGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>CP026968|4|4|729870-729951|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP026968.1\|AVG68788.1\|724398_724893_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|372596
CP026968.1\|AVG68797.1\|730184_730298_+\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG68799.1\|730886_731183_+\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP026968.1\|AVG68787.1\|723626_724244_-\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
CP026968.1\|AVG68794.1\|728328_728709_+\|glycine-cleavage-system-protein-H	unknown	unknown	gnl\|CDD\|234918
CP026968.1\|AVG68804.1\|734766_735618_-\|DUF368-domain-containing-protein	unknown	unknown	gnl\|CDD\|224946
CP026968.1\|AVG68792.1\|727350_727671_-\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP026968.1\|AVG68791.1\|726660_727200_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
CP026968.1\|AVG68801.1\|732450_733146_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
CP026968.1\|AVG68796.1\|728887_729766_+\|DUF1963-domain-containing-protein	unknown	unknown	gnl\|CDD\|226395
CP026968.1\|AVG68795.1\|728772_728886_+\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG68803.1\|734338_734533_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
CP026968.1\|AVG68793.1\|727814_728171_+\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239334
CP026968.1\|AVG68790.1\|725861_726578_+\|3-dehydroquinase	unknown	unknown	gnl\|CDD\|184156
CP026968.1\|AVG68806.1\|736804_738112_+\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
CP026968.1\|AVG68789.1\|725291_725714_-\|organic-hydroperoxide-reductase-OsmC/OhrA	unknown	unknown	gnl\|CDD\|274649
CP026968.1\|AVG68805.1\|735945_736707_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
CP026968.1\|AVG68798.1\|730507_730894_+\|topiosmerase	unknown	unknown	gnl\|CDD\|224572
CP026968.1\|AVG68802.1\|733163_733985_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
CP026968.1\|AVG68800.1\|731432_732458_+\|methionine-import-ATP-binding-protein-MetN-2	unknown	unknown	gnl\|CDD\|224058

Protein	Function_ID	Function_description	E-value
CP026968.1\|AVG68788.1\|724398_724893_-\|N-acetyltransferase	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
CP026968.1\|AVG68798.1\|730507_730894_+\|topiosmerase	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36
CP026968.1\|AVG68799.1\|730886_731183_+\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
CP026968.1\|AVG68787.1\|723626_724244_-\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	2.60719e-61
CP026968.1\|AVG68794.1\|728328_728709_+\|glycine-cleavage-system-protein-H	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.01516e-70
CP026968.1\|AVG68804.1\|734766_735618_-\|DUF368-domain-containing-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	7.67366e-77
CP026968.1\|AVG68792.1\|727350_727671_-\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.4922e-24
CP026968.1\|AVG68791.1\|726660_727200_+\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
CP026968.1\|AVG68801.1\|732450_733146_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	2.064e-98
CP026968.1\|AVG68796.1\|728887_729766_+\|DUF1963-domain-containing-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	3.13065e-77
CP026968.1\|AVG68803.1\|734338_734533_+\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
CP026968.1\|AVG68793.1\|727814_728171_+\|arsenate-reductase-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
CP026968.1\|AVG68790.1\|725861_726578_+\|3-dehydroquinase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	3.2619e-146
CP026968.1\|AVG68789.1\|725291_725714_-\|organic-hydroperoxide-reductase-OsmC/OhrA	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
CP026968.1\|AVG68805.1\|735945_736707_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
CP026968.1\|AVG68802.1\|733163_733985_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	5.85276e-112
CP026968.1\|AVG68806.1\|736804_738112_+\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	3.36148e-135
CP026968.1\|AVG68800.1\|731432_732458_+\|methionine-import-ATP-binding-protein-MetN-2	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	2.03316e-170

>CP026968.1|AVG68796.1|728887_729766_+|DUF1963-domain-containing-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLSQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLNDLPEQQELFPVNEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQVHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>CP026968.1|AVG68795.1|728772_728886_+|hypothetical-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGS
>CP026968.1|AVG68794.1|728328_728709_+|glycine-cleavage-system-protein-H
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE
>CP026968.1|AVG68793.1|727814_728171_+|arsenate-reductase-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>CP026968.1|AVG68792.1|727350_727671_-|thioredoxin
MQAIKSNESFKSIINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>CP026968.1|AVG68791.1|726660_727200_+|nitroreductase
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>CP026968.1|AVG68790.1|725861_726578_+|3-dehydroquinase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFINDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIIKHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>CP026968.1|AVG68789.1|725291_725714_-|organic-hydroperoxide-reductase-OsmC/OhrA
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>CP026968.1|AVG68788.1|724398_724893_-|N-acetyltransferase
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>CP026968.1|AVG68787.1|723626_724244_-|amino-acid-transporter
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIISPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF
>CP026968.1|AVG68797.1|730184_730298_+|hypothetical-protein
MLGPPQLAHYCKLTFRQLLCWGPAIIEKFVIGVFSFG
>CP026968.1|AVG68798.1|730507_730894_+|topiosmerase
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>CP026968.1|AVG68799.1|730886_731183_+|thioredoxin
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>CP026968.1|AVG68800.1|731432_732458_+|methionine-import-ATP-binding-protein-MetN-2
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEHGPVTQVFENPQHTVTKRFVKEDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>CP026968.1|AVG68801.1|732450_733146_+|ABC-transporter-permease
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWIVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWITNKLDKR
>CP026968.1|AVG68802.1|733163_733985_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYDLDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDVGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>CP026968.1|AVG68803.1|734338_734533_+|CsbD-family-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>CP026968.1|AVG68804.1|734766_735618_-|DUF368-domain-containing-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTGLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFTGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>CP026968.1|AVG68805.1|735945_736707_+|Fe-S-cluster-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>CP026968.1|AVG68806.1|736804_738112_+|Fe-S-cluster-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKHFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKNASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK

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Crispr_ID: CP026968_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026968_5

1514734-1514818

Orphan

Consensus_repeat	Method
CACCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026968_5

>merge|CP026968|5|1514734-1514818|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGCCTGTAGAA

>CP026968|5|5|1514734-1514818|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA
CACCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP026968.1\|AVG69543.1\|1511564_1512191_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237622
CP026968.1\|AVG69553.1\|1523044_1523629_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627
CP026968.1\|AVG69551.1\|1521971_1522688_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
CP026968.1\|AVG69542.1\|1509663_1511496_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
CP026968.1\|AVG69539.1\|1506692_1507445_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|224303
CP026968.1\|AVG69544.1\|1512222_1513200_-\|HrcA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273017
CP026968.1\|AVG69540.1\|1507446_1508385_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
CP026968.1\|AVG70861.1\|1513300_1514425_-\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
CP026968.1\|AVG69554.1\|1523618_1524188_-\|nicotinate-nicotinamide-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|273101
CP026968.1\|AVG69549.1\|1520692_1521154_-\|ComE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622
CP026968.1\|AVG69538.1\|1505339_1506686_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
CP026968.1\|AVG70860.1\|1503943_1504627_-\|serine-protease	unknown	unknown	gnl\|CDD\|223961
CP026968.1\|AVG69547.1\|1517455_1518430_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
CP026968.1\|AVG69552.1\|1522690_1523044_-\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
CP026968.1\|AVG69548.1\|1518486_1520634_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|225212
CP026968.1\|AVG69545.1\|1514990_1516814_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
CP026968.1\|AVG69541.1\|1508388_1509528_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237656
CP026968.1\|AVG69537.1\|1504870_1505047_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP026968.1\|AVG69550.1\|1521245_1521932_-\|competence-protein-ComE	unknown	unknown	gnl\|CDD\|224472
CP026968.1\|AVG69546.1\|1517159_1517411_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943

Protein	Function_ID	Function_description	E-value
CP026968.1\|AVG69543.1\|1511564_1512191_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	3.74407e-81
CP026968.1\|AVG69553.1\|1523044_1523629_-\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	2.21948e-80
CP026968.1\|AVG69551.1\|1521971_1522688_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	9.9222e-16
CP026968.1\|AVG69542.1\|1509663_1511496_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
CP026968.1\|AVG69539.1\|1506692_1507445_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.90273e-91
CP026968.1\|AVG69544.1\|1512222_1513200_-\|HrcA-family-transcriptional-regulator	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	2.05887e-119
CP026968.1\|AVG69540.1\|1507446_1508385_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	9.7051e-134
CP026968.1\|AVG70861.1\|1513300_1514425_-\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
CP026968.1\|AVG69554.1\|1523618_1524188_-\|nicotinate-nicotinamide-nucleotide-adenylyltransferase	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	2.64141e-76
CP026968.1\|AVG69549.1\|1520692_1521154_-\|ComE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	4.81051e-102
CP026968.1\|AVG69538.1\|1505339_1506686_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
CP026968.1\|AVG70860.1\|1503943_1504627_-\|serine-protease	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	8.78003e-63
CP026968.1\|AVG69547.1\|1517455_1518430_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	4.1415e-104
CP026968.1\|AVG69552.1\|1522690_1523044_-\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.95861e-47
CP026968.1\|AVG69548.1\|1518486_1520634_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	1.49563e-90
CP026968.1\|AVG69545.1\|1514990_1516814_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
CP026968.1\|AVG69541.1\|1508388_1509528_-\|molecular-chaperone-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
CP026968.1\|AVG69537.1\|1504870_1505047_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10
CP026968.1\|AVG69550.1\|1521245_1521932_-\|competence-protein-ComE	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	1.06297e-33
CP026968.1\|AVG69546.1\|1517159_1517411_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17

>CP026968.1|AVG70861.1|1513300_1514425_-|oxygen-independent-coproporphyrinogen-III-oxidase
MTVQSAYIHIPFCVRICTYCDFNKYFIQNQPVDEYLDALITEMSTAKYRNLKTMYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLLMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFGQTINNLKEKELIVEKNDAIALTKRGKVIGNEVFEAFLIND
>CP026968.1|AVG69544.1|1512222_1513200_-|HrcA-family-transcriptional-regulator
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>CP026968.1|AVG69543.1|1511564_1512191_-|nucleotide-exchange-factor-GrpE
MTNKDESVEKNTESTVEETNIKQNIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>CP026968.1|AVG69542.1|1509663_1511496_-|molecular-chaperone-DnaK
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>CP026968.1|AVG69541.1|1508388_1509528_-|molecular-chaperone-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>CP026968.1|AVG69540.1|1507446_1508385_-|50S-ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDELDQHNIQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>CP026968.1|AVG69539.1|1506692_1507445_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVVKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSAISYEKELMG
>CP026968.1|AVG69538.1|1505339_1506686_-|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>CP026968.1|AVG69537.1|1504870_1505047_-|30S-ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>CP026968.1|AVG70860.1|1503943_1504627_-|serine-protease
MTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGMILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD
>CP026968.1|AVG69545.1|1514990_1516814_-|elongation-factor-4
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELLPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>CP026968.1|AVG69546.1|1517159_1517411_+|30S-ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>CP026968.1|AVG69547.1|1517455_1518430_-|DNA-polymerase-III-subunit-delta
MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIVDACAETDYKLKSSYMDKQLILELFILSL
>CP026968.1|AVG69548.1|1518486_1520634_-|DNA-internalization-related-competence-protein-ComEC/Rec2
MLSTFLFILLLYITYRKNKIVYAPISLFLIIFSSWYLHYSQQAIFNYINYIERNSQFNERAQVIQIQRQGSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNENKFVTLKLQSIVVQSCLESNRSNLIEKHKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGITIIVLTLYAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIIFIISVYYIFWLLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSSNTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSNSYGNASGL
>CP026968.1|AVG69549.1|1520692_1521154_-|ComE-operon-protein-2
MERIKWEEYFMAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>CP026968.1|AVG69550.1|1521245_1521932_-|competence-protein-ComE
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI
>CP026968.1|AVG69551.1|1521971_1522688_-|class-I-SAM-dependent-methyltransferase
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESNILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDAERLFFIAKK
>CP026968.1|AVG69552.1|1522690_1523044_-|ribosome-silencing-factor
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>CP026968.1|AVG69553.1|1523044_1523629_-|HD-domain-containing-protein
MNIEKAKRLAKEKLPEKRYNHSLRVAETAIKLAEIYDGDTSKVELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>CP026968.1|AVG69554.1|1523618_1524188_-|nicotinate-nicotinamide-nucleotide-adenylyltransferase
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHNNFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH

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Crispr_ID: CP026968_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026968_6

1951271-1951352

Orphan

Consensus_repeat	Method
GGCCCCCACCCCAACTTACATTGT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP026968_6

>merge|CP026968|6|1951271-1951352|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGTTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCCACCCCAACTTGCATTGT

>CP026968|6|6|1951271-1951352|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGT	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG
GGCCCCCACCCCAACTTGCATTGT

Protein	Signature genes	Signature genes Name	Protein_function
CP026968.1\|AVG69970.1\|1942851_1943784_+\|ATP-dependent-helicase	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235735
CP026968.1\|AVG69982.1\|1956259_1957525_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236768
CP026968.1\|AVG69968.1\|1941986_1942160_-\|transcriptional-regulator	unknown	unknown	unknown
CP026968.1\|AVG69978.1\|1951493_1952801_+\|TrkH-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|273349
CP026968.1\|AVG69969.1\|1942122_1942836_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
CP026968.1\|AVG69984.1\|1958708_1959494_+\|carbon-nitrogen-family-hydrolase	unknown	unknown	gnl\|CDD\|143607
CP026968.1\|AVG69976.1\|1948335_1949391_-\|bi-component-leukocidin-LukGH-subunit-H	unknown	unknown	gnl\|CDD\|369625
CP026968.1\|AVG69981.1\|1955491_1956235_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
CP026968.1\|AVG69980.1\|1955032_1955317_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
CP026968.1\|AVG69986.1\|1960463_1961027_+\|accessory-gene-regulator-AgrB	unknown	unknown	gnl\|CDD\|226899
CP026968.1\|AVG69979.1\|1953340_1954957_-\|molecular-chaperone-GroEL	unknown	unknown	gnl\|CDD\|234573
CP026968.1\|AVG69983.1\|1957721_1958348_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
CP026968.1\|AVG69973.1\|1944616_1945081_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236154
CP026968.1\|AVG69974.1\|1945139_1946177_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
CP026968.1\|AVG69985.1\|1960093_1960228_-\|delta-lysin-family-phenol-soluble-modulin	unknown	unknown	gnl\|CDD\|173213
CP026968.1\|AVG69975.1\|1947297_1948314_-\|bi-component-leukocidin-LukGH-subunit-G	unknown	unknown	gnl\|CDD\|369625
CP026968.1\|AVG69977.1\|1949826_1951050_+\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|181490
CP026968.1\|AVG69972.1\|1944334_1944517_+\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG69987.1\|1961029_1961173_+\|cyclic-lactone-autoinducer-peptide	unknown	unknown	gnl\|CDD\|129030
CP026968.1\|AVG69971.1\|1943789_1944131_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP026968.1\|AVG69970.1\|1942851_1943784_+\|ATP-dependent-helicase	gnl\|CDD\|235735	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated.	3.00799e-42
CP026968.1\|AVG69982.1\|1956259_1957525_-\|hypothetical-protein	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	1.18261e-09
CP026968.1\|AVG69979.1\|1953340_1954957_-\|molecular-chaperone-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
CP026968.1\|AVG69978.1\|1951493_1952801_+\|TrkH-family-potassium-uptake-protein	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	7.96864e-82
CP026968.1\|AVG69969.1\|1942122_1942836_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	4.74596e-24
CP026968.1\|AVG69984.1\|1958708_1959494_+\|carbon-nitrogen-family-hydrolase	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	5.69545e-126
CP026968.1\|AVG69976.1\|1948335_1949391_-\|bi-component-leukocidin-LukGH-subunit-H	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.84035e-77
CP026968.1\|AVG69981.1\|1955491_1956235_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.67124e-11
CP026968.1\|AVG69980.1\|1955032_1955317_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.94304e-45
CP026968.1\|AVG69986.1\|1960463_1961027_+\|accessory-gene-regulator-AgrB	gnl\|CDD\|226899	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription].	6.65966e-71
CP026968.1\|AVG69983.1\|1957721_1958348_+\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	5.71771e-116
CP026968.1\|AVG69973.1\|1944616_1945081_+\|hypothetical-protein	gnl\|CDD\|236154	PRK08119, PRK08119, flagellar motor switch protein; Validated.	0.00756653
CP026968.1\|AVG69974.1\|1945139_1946177_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	9.44394e-26
CP026968.1\|AVG69985.1\|1960093_1960228_-\|delta-lysin-family-phenol-soluble-modulin	gnl\|CDD\|173213	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin.	8.25732e-15
CP026968.1\|AVG69975.1\|1947297_1948314_-\|bi-component-leukocidin-LukGH-subunit-G	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.05827e-99
CP026968.1\|AVG69977.1\|1949826_1951050_+\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	0
CP026968.1\|AVG69987.1\|1961029_1961173_+\|cyclic-lactone-autoinducer-peptide	gnl\|CDD\|129030	smart00794, AgrD, Staphylococcal AgrD protein. This family consists of several AgrD proteins from many Staphylococcus species. The agr locus was initially described in Staphylococcus aureus as an element controlling the production of exoproteins implicated in virulence. Its pattern of action has been shown to be complex, upregulating certain extracellular toxins and enzymes expressed post-exponentially and repressing some exponential-phase surface components. AgrD encodes the precursor of the autoinducing peptide (AIP).The AIP derived from AgrD by the action of AgrB interacts with AgrC in the membrane to activate AgrA, which upregulates transcription both from promoter P2, amplifying the response, and from P3, initiating the production of a novel effector: RNAIII. In S. aureus, delta-hemolysin is the only translation product of RNA III and is not involved in the regulatory functions of the transcript, which is therefore the primary agent for modulating the expression of other operons controlled by agr.	3.13559e-15

>CP026968.1|AVG69977.1|1949826_1951050_+|succinyl-diaminopimelate-desuccinylase
MTTFSEKEKIQLLADIVELQTENNNEIDVCNYLKDLFDKYDIKSEILKVNEHRANIVAEIGNGSPILALSGHMDVVDAGNQDNWTYPPFQLTEKAGKLYGRGTTDMKGGLMALVITLIELKEQNQLPQGTIRLLATAGEEKEQEGAKLLADKGYLDDVDGLIIAEPTGSGIYYAHKGSMSCKVTATGKAVHSSVPFIGDNAIDTLLEFYNQFKEKYSELKKHDTKHELDVAPMFKSLIGKEISEEDANYASGLTAVCSIINGGKQFNSVPDEASLEFNVRPVPEYDNDFIESFFQNIINDVDSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVEQDEIFVSALVGATDASSFLGDNKDNVDLAIFGPGNPLMAHQIDEYIEKDMYLKYIDIFKEASIQYLKEK
>CP026968.1|AVG69976.1|1948335_1949391_-|bi-component-leukocidin-LukGH-subunit-H
MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKNSTVPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKFESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKFDSTKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLFYRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDILKNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG
>CP026968.1|AVG69975.1|1947297_1948314_-|bi-component-leukocidin-LukGH-subunit-G
MIKQLYKNITICSLAISTALTVFPATSYAKINSEIKAVSEKNLDGDTKMYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGYWNSTLRWPGSYSVSIQNVDDNNNTNVTDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKESNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMGHDHTRQLTNDSDNRTKSEIFSLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDKGKSQFVVHYKRSMDEFKIDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHDVKFVKVLNDNEKK
>CP026968.1|AVG69974.1|1945139_1946177_+|site-specific-integrase
MKTRCYDGKKWQYEFKHEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDNYITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKRTRSSLALFIMLCTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIAKSDMKHIMDVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILESM
>CP026968.1|AVG69973.1|1944616_1945081_+|hypothetical-protein
MKRLLGLLLVSTLVLSACGNDENQEESKKEVKSKEKKIEKEKENKSKKDKEKEVATQQQPDNQTVEQPQSQEQSVQQPQQQIPQNSVPQQNVQVQQNKKQKVDLNNMPPTDFSTEGMSEQAQKQIEELSMQKDYHGLSQREYNDRVSEIINNDN
>CP026968.1|AVG69972.1|1944334_1944517_+|hypothetical-protein
MKITNCKIKRETVIYEVLTSGNQPFTYELPKDLSSHNARKYLEFISQKLDGDKLTKEDSL
>CP026968.1|AVG69971.1|1943789_1944131_+|hypothetical-protein
MIKKIFTKKHVFLVIEDENHNHSDAVFGKSILLSIYVGVNKKTNSKSGKFIYLDRSKRIVRQSDITKIESANENDVDFYNLLKKEKEIVYSKNIVDKYNLANYIIYYEVSTKE
>CP026968.1|AVG69970.1|1942851_1943784_+|ATP-dependent-helicase
MKKYDIAVLDFETMNEHMNSPCEVAVSLIKDLSIVKVYSSYINPPNNRYNLKNAKIHKIPEDVILKAPKYPDIYQEILYLLKESHLIIAHNALFDISVLKNTNNYYDLPVPNFMYVDSINIFRSFHAISSFKLENLCSLYDIDKEKLHSAKFDVLALSKMLISLAKNNQHYSVLKLIHYMPKQYIRFSKYSNSPTKLFDSGFQKIHMKISEINKIEVESVIPISKDKNVVFTGNFDTEKQDLMILTRKKGAYIRSDVTAKTDILVEGVQDDKYKDVNGLVSKQRKAREYVGNGAKIQFLNEEDLINLIKE
>CP026968.1|AVG69969.1|1942122_1942836_+|XRE-family-transcriptional-regulator
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSIYNKLTPPRQKNVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKVNGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL
>CP026968.1|AVG69968.1|1941986_1942160_-|transcriptional-regulator
MFLAIIIFLSLFILLTSFFLIIRNFHIIVKFFTKKTYLMLTIRKFRIILGLRKAVTT
>CP026968.1|AVG69978.1|1951493_1952801_+|TrkH-family-potassium-uptake-protein
MNKVHKPLYFYLMLFFSTTIIGALLLYLPFTGKKPISFLDALFIASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNRFLIMVTWNIDEPGGVIKLIKHLAIYSLVTELIGMICLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDYSSDPIVIITISILIIFGGIGHFVVIDFINCKKLSKLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQHMGLVEKIGNSFFQSVTTRTAGFNSIDIASINKSTALMLMLLMFIGGAPLSAAGGIKITTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINPNISLIKLLFEVVSAFGTVGLSMNLTTEYHGITKIIIIFVMLCGKVGLLTLLRTFIPPKSPKNYRYTKGQIYL
>CP026968.1|AVG69979.1|1953340_1954957_-|molecular-chaperone-GroEL
MVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDASIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM
>CP026968.1|AVG69980.1|1955032_1955317_-|co-chaperone-GroES
MLKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE
>CP026968.1|AVG69981.1|1955491_1956235_+|CPBP-family-intramembrane-metalloprotease
MTRLWASLLTVIIYILSQFLPLLIVKKLPFVQYSGIELTKAVIYIQLVLFLIAATTIILINLKIKNPTKLELEVKEPKKYIIPWALLGFALVMIYQMVVSIVLTQIYGGQQVSPNTEKLIIIARKIPIFIFFVSIIGPLLEEYVFRKVIFGELFNAIKGNRIVAFIIATTVSSLIFALAHNDFKFIPVYFGMGVIFSLAYVWTKRLAVPIIIHMLQNGFVVIFQLLNPEALKKATEQANFIYHIFIP
>CP026968.1|AVG69982.1|1956259_1957525_-|hypothetical-protein
MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNITSPSVNSEMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNPSPNPKPDPDNPKPKPDPKPDPDKPKPNLDPKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDKPKPNPNPNPKPDPNKPNPNPSPDPDQPGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNESQRR
>CP026968.1|AVG69983.1|1957721_1958348_+|nitroreductase-family-protein
MGLFKKDKKAMTFDNAMEERRSIYNLKDSISISDDELESMIAHAVKHVPSSFNSQSTRIVLLLNDNNNKFWDNTKAILKEVMGENRDFEPTEQKIDNFKHSYGTILFYEDQDVVSGLQEQMPNYYDNFAIWSTQTNAMHQFAIWTALATKGIGASLQHYNPLVDEMTSNEFNIPKSWKLIAQMPFGDIREAAGEKTFNPVEDRFVIKK
>CP026968.1|AVG69984.1|1958708_1959494_+|carbon-nitrogen-family-hydrolase
MKVQIYQLPIIFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNYQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGENVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK
>CP026968.1|AVG69985.1|1960093_1960228_-|delta-lysin-family-phenol-soluble-modulin
MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK
>CP026968.1|AVG69986.1|1960463_1961027_+|accessory-gene-regulator-AgrB
MNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQIIVGNFFKILVTYSISIFLSVFLFTLVTHLSYMLIRYNAHGAHAKSSILCYIQSILTFVFVPYFLINIDINFTYLLALSIIGLISVVIYAPAATKKQPIPIKLVKRKKYLSIIMYLLVLILSLIIHPFYAQFMLLGILVESITLLPIFFPKED
>CP026968.1|AVG69987.1|1961029_1961173_+|cyclic-lactone-autoinducer-peptide
MNTLVNMFFDFIIKLAKAIGIVGGVNACSSLFDEPKVPAELTNLYDK

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Crispr_ID: CP026968_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026968_7

2078754-2078834

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP026968_7

>merge|CP026968|7|2078754-2078834|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTCAACTTTAGTTGTTAGGGGCTTCT

>CP026968|7|7|2078754-2078834|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCATGCGCTTAGCGCAGGCGCTCCTACTTTT
CAACTTTAGTTGTTAGGGGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP026968.1\|AVG70096.1\|2073628_2073859_-\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG70099.1\|2076080_2076401_+\|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP026968.1\|AVG70108.1\|2082708_2084514_-\|glutamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
CP026968.1\|AVG70097.1\|2073889_2074828_-\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
CP026968.1\|AVG70093.1\|2070070_2070514_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
CP026968.1\|AVG70110.1\|2086767_2088900_+\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226234
CP026968.1\|AVG70104.1\|2079953_2080112_+\|integrase	unknown	unknown	unknown
CP026968.1\|AVG70098.1\|2075263_2075929_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
CP026968.1\|AVG70102.1\|2079169_2079274_-\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG70107.1\|2081694_2082477_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
CP026968.1\|AVG70109.1\|2085194_2086733_+\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
CP026968.1\|AVG70103.1\|2079706_2079889_-\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG70111.1\|2088911_2089346_+\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP026968.1\|AVG70106.1\|2080769_2081627_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
CP026968.1\|AVG70100.1\|2076402_2077380_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
CP026968.1\|AVG70092.1\|2069239_2069950_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP026968.1\|AVG70101.1\|2077645_2078737_+\|transcriptional-regulator	unknown	unknown	unknown
CP026968.1\|AVG70095.1\|2071583_2072957_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
CP026968.1\|AVG70094.1\|2070713_2071127_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
CP026968.1\|AVG70105.1\|2080548_2080641_+\|erm-Leader-peptide	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP026968.1\|AVG70099.1\|2076080_2076401_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
CP026968.1\|AVG70108.1\|2082708_2084514_-\|glutamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP026968.1\|AVG70097.1\|2073889_2074828_-\|mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP026968.1\|AVG70093.1\|2070070_2070514_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
CP026968.1\|AVG70110.1\|2086767_2088900_+\|PRD-domain-containing-protein	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.02509e-68
CP026968.1\|AVG70098.1\|2075263_2075929_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
CP026968.1\|AVG70109.1\|2085194_2086733_+\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP026968.1\|AVG70111.1\|2088911_2089346_+\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP026968.1\|AVG70107.1\|2081694_2082477_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.29094e-106
CP026968.1\|AVG70100.1\|2076402_2077380_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.49165e-107
CP026968.1\|AVG70092.1\|2069239_2069950_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP026968.1\|AVG70106.1\|2080769_2081627_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	6.8047e-59
CP026968.1\|AVG70095.1\|2071583_2072957_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	4.11455e-06
CP026968.1\|AVG70094.1\|2070713_2071127_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46

>CP026968.1|AVG70101.1|2077645_2078737_+|transcriptional-regulator
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP026968.1|AVG70100.1|2076402_2077380_+|cation-transporter
MSHSHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>CP026968.1|AVG70099.1|2076080_2076401_+|ArsR-family-transcriptional-regulator
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP026968.1|AVG70098.1|2075263_2075929_-|SDR-family-NAD(P)-dependent-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>CP026968.1|AVG70097.1|2073889_2074828_-|mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP026968.1|AVG70096.1|2073628_2073859_-|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP026968.1|AVG70095.1|2071583_2072957_-|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVKKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP026968.1|AVG70094.1|2070713_2071127_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP026968.1|AVG70093.1|2070070_2070514_-|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP026968.1|AVG70092.1|2069239_2069950_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>CP026968.1|AVG70102.1|2079169_2079274_-|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>CP026968.1|AVG70103.1|2079706_2079889_-|hypothetical-protein
MIIFRFKVNAFFPVKLCLMIRFCLESCCIFRRHLLITFHNIRSKFIMFKYISSKCIICTG
>CP026968.1|AVG70104.1|2079953_2080112_+|integrase
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>CP026968.1|AVG70105.1|2080548_2080641_+|erm-Leader-peptide
MTYGSIVAILCALFVIFFIPYMEKKDKKKK
>CP026968.1|AVG70106.1|2080769_2081627_-|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>CP026968.1|AVG70107.1|2081694_2082477_-|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATTGGVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHHLLKLVGISAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLNILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP026968.1|AVG70108.1|2082708_2084514_-|glutamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP026968.1|AVG70109.1|2085194_2086733_+|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP026968.1|AVG70110.1|2086767_2088900_+|PRD-domain-containing-protein
MLLSTREKEMIALLIKYHSQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP026968.1|AVG70111.1|2088911_2089346_+|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA

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Crispr_ID: CP026968_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026968_9

2199118-2199198

Orphan

Consensus_repeat	Method
TCTATGTTGGGGCCCCGCCAACTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026968_9

>merge|CP026968|9|2199118-2199198|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTG

>CP026968|9|9|2199118-2199198|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTG	CACATTATTGTAAGCTGACTTTCTGTCAGCT
TCTGTGTTGGGGCCCCGCCAACTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP026968.1\|AVG70215.1\|2195742_2196507_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
CP026968.1\|AVG70222.1\|2199341_2200364_-\|cyclic-pyranopterin-monophosphate-synthase	unknown	unknown	gnl\|CDD\|274250
CP026968.1\|AVG70223.1\|2200383_2200983_-\|molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
CP026968.1\|AVG70219.1\|2198890_2199076_+\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG70228.1\|2203492_2203987_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
CP026968.1\|AVG70214.1\|2195499_2195751_+\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG70225.1\|2201228_2201675_-\|molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391
CP026968.1\|AVG70211.1\|2190060_2190378_+\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG70213.1\|2193845_2195111_-\|lipid-II:glycine-glycyltransferase-FemX	unknown	unknown	gnl\|CDD\|225224
CP026968.1\|AVG70227.1\|2202170_2203430_-\|molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
CP026968.1\|AVG70226.1\|2201688_2202174_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
CP026968.1\|AVG70217.1\|2197101_2198313_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
CP026968.1\|AVG70216.1\|2196668_2197109_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP026968.1\|AVG70218.1\|2198414_2198765_-\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
CP026968.1\|AVG70210.1\|2189651_2189816_+\|hypothetical-protein	unknown	unknown	unknown
CP026968.1\|AVG70224.1\|2200989_2201223_-\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|340452
CP026968.1\|AVG70230.1\|2204525_2205530_-\|molybdopterin-biosynthesis-protein-MoeB	unknown	unknown	gnl\|CDD\|181084
CP026968.1\|AVG70231.1\|2205699_2206305_-\|molybdenum-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226628
CP026968.1\|AVG70229.1\|2203988_2204495_-\|molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223595
CP026968.1\|AVG70212.1\|2190561_2193729_-\|AcrB/AcrD/AcrF-family-protein	unknown	unknown	gnl\|CDD\|223911

Protein	Function_ID	Function_description	E-value
CP026968.1\|AVG70215.1\|2195742_2196507_-\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50083e-38
CP026968.1\|AVG70222.1\|2199341_2200364_-\|cyclic-pyranopterin-monophosphate-synthase	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.0538e-165
CP026968.1\|AVG70223.1\|2200383_2200983_-\|molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	2.15389e-66
CP026968.1\|AVG70229.1\|2203988_2204495_-\|molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	2.42221e-64
CP026968.1\|AVG70224.1\|2200989_2201223_-\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25
CP026968.1\|AVG70228.1\|2203492_2203987_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	2.93711e-97
CP026968.1\|AVG70227.1\|2202170_2203430_-\|molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	4.50966e-159
CP026968.1\|AVG70226.1\|2201688_2202174_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	9.59347e-51
CP026968.1\|AVG70217.1\|2197101_2198313_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.92881e-73
CP026968.1\|AVG70216.1\|2196668_2197109_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.35323e-15
CP026968.1\|AVG70218.1\|2198414_2198765_-\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
CP026968.1\|AVG70213.1\|2193845_2195111_-\|lipid-II:glycine-glycyltransferase-FemX	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	1.81413e-143
CP026968.1\|AVG70225.1\|2201228_2201675_-\|molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	6.99133e-58
CP026968.1\|AVG70230.1\|2204525_2205530_-\|molybdopterin-biosynthesis-protein-MoeB	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	6.83722e-133
CP026968.1\|AVG70231.1\|2205699_2206305_-\|molybdenum-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	1.78595e-116
CP026968.1\|AVG70212.1\|2190561_2193729_-\|AcrB/AcrD/AcrF-family-protein	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0

>CP026968.1|AVG70219.1|2198890_2199076_+|hypothetical-protein
MFRFISFGQLVVYSTTFIPKKDILQLNDLECDINVKEPLKINYVVIFGSGTEITFSQNLFR
>CP026968.1|AVG70218.1|2198414_2198765_-|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>CP026968.1|AVG70217.1|2197101_2198313_+|MFS-transporter
MTNQGSLNKSPIFTKSFTINFFVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETDVINKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>CP026968.1|AVG70216.1|2196668_2197109_+|MarR-family-transcriptional-regulator
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>CP026968.1|AVG70215.1|2195742_2196507_-|VOC-family-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>CP026968.1|AVG70214.1|2195499_2195751_+|hypothetical-protein
MRTIILSLFIIMNIVAIIMTLSQPLTVNYFSLRVILIFFTFILSIFFILIKSSRLNNILTILSIVLVIIHMGILAHSTYVYLY
>CP026968.1|AVG70213.1|2193845_2195111_-|lipid-II:glycine-glycyltransferase-FemX
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYILNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>CP026968.1|AVG70212.1|2190561_2193729_-|AcrB/AcrD/AcrF-family-protein
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASAPNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTVKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHVDGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>CP026968.1|AVG70211.1|2190060_2190378_+|hypothetical-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>CP026968.1|AVG70210.1|2189651_2189816_+|hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>CP026968.1|AVG70222.1|2199341_2200364_-|cyclic-pyranopterin-monophosphate-synthase
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>CP026968.1|AVG70223.1|2200383_2200983_-|molybdenum-cofactor-guanylyltransferase
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNIYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>CP026968.1|AVG70224.1|2200989_2201223_-|molybdopterin-synthase-sulfur-carrier-subunit
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>CP026968.1|AVG70225.1|2201228_2201675_-|molybdopterin-synthase-catalytic-subunit
MKQFEIVIEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>CP026968.1|AVG70226.1|2201688_2202174_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKTHGYTVATIKHHGHAKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRDEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>CP026968.1|AVG70227.1|2202170_2203430_-|molybdopterin-molybdenumtransferase
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETKTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQKDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>CP026968.1|AVG70228.1|2203492_2203987_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIFKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSGQ
>CP026968.1|AVG70229.1|2203988_2204495_-|molybdenum-cofactor-biosynthesis-protein
MGEHQNVKLNRTVKAAVLTVSDTRDFVTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>CP026968.1|AVG70230.1|2204525_2205530_-|molybdopterin-biosynthesis-protein-MoeB
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDGCIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>CP026968.1|AVG70231.1|2205699_2206305_-|molybdenum-ABC-transporter-ATP-binding-protein
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTTKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSKHIDQLIQTLNINHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP026968_3	3.1\|693711\|32\|CP026968\|CRISPRCasFinder	693711-693742	32	CP026968.1	730201-730232	0	1.0
CP026968_3	3.1\|693711\|32\|CP026968\|CRISPRCasFinder	693711-693742	32	CP026968.1	1529403-1529434	0	1.0
CP026968_3	3.1\|693711\|32\|CP026968\|CRISPRCasFinder	693711-693742	32	CP026968.1	1975352-1975383	0	1.0
CP026968_3	3.1\|693711\|32\|CP026968\|CRISPRCasFinder	693711-693742	32	CP026968.1	2364350-2364381	0	1.0
CP026968_3	3.1\|693711\|32\|CP026968\|CRISPRCasFinder	693711-693742	32	CP026968.1	2741929-2741960	0	1.0
CP026968_6	6.1\|1951295\|34\|CP026968\|CRISPRCasFinder	1951295-1951328	34	CP026968.1	681089-681122	0	1.0
CP026968_6	6.1\|1951295\|34\|CP026968\|CRISPRCasFinder	1951295-1951328	34	CP026968.1	1034600-1034633	0	1.0
CP026968_3	3.1\|693711\|32\|CP026968\|CRISPRCasFinder	693711-693742	32	CP026968.1	1245012-1245043	1	0.969
CP026968_4	4.1\|729894\|34\|CP026968\|CRISPRCasFinder	729894-729927	34	CP026968.1	1244934-1244967	1	0.971
CP026968_5	5.1\|1514760\|33\|CP026968\|CRISPRCasFinder	1514760-1514792	33	CP026968.1	1244935-1244967	1	0.97
CP026968_6	6.1\|1951295\|34\|CP026968\|CRISPRCasFinder	1951295-1951328	34	CP026968.1	1634757-1634790	1	0.971
CP026968_9	9.1\|2199143\|31\|CP026968\|CRISPRCasFinder	2199143-2199173	31	CP026968.1	693661-693691	1	0.968
CP026968_3	3.1\|693711\|32\|CP026968\|CRISPRCasFinder	693711-693742	32	CP026968.1	1034785-1034816	2	0.938
CP026968_3	3.1\|693711\|32\|CP026968\|CRISPRCasFinder	693711-693742	32	CP026968.1	1034841-1034872	2	0.938
CP026968_3	3.1\|693711\|32\|CP026968\|CRISPRCasFinder	693711-693742	32	CP026968.1	1034897-1034928	2	0.938
CP026968_6	6.1\|1951295\|34\|CP026968\|CRISPRCasFinder	1951295-1951328	34	CP026968.1	1249308-1249341	2	0.941
CP026968_6	6.1\|1951295\|34\|CP026968\|CRISPRCasFinder	1951295-1951328	34	CP026968.1	2639950-2639983	2	0.941
CP026968_9	9.1\|2199143\|31\|CP026968\|CRISPRCasFinder	2199143-2199173	31	CP026968.1	243670-243700	2	0.935
CP026968_9	9.1\|2199143\|31\|CP026968\|CRISPRCasFinder	2199143-2199173	31	CP026968.1	516284-516314	2	0.935
CP026968_9	9.1\|2199143\|31\|CP026968\|CRISPRCasFinder	2199143-2199173	31	CP026968.1	730207-730237	2	0.935
CP026968_9	9.1\|2199143\|31\|CP026968\|CRISPRCasFinder	2199143-2199173	31	CP026968.1	937494-937524	2	0.935
CP026968_9	9.1\|2199143\|31\|CP026968\|CRISPRCasFinder	2199143-2199173	31	CP026968.1	937610-937640	2	0.935
CP026968_9	9.1\|2199143\|31\|CP026968\|CRISPRCasFinder	2199143-2199173	31	CP026968.1	1038737-1038767	2	0.935
CP026968_9	9.1\|2199143\|31\|CP026968\|CRISPRCasFinder	2199143-2199173	31	CP026968.1	1244893-1244923	2	0.935
CP026968_9	9.1\|2199143\|31\|CP026968\|CRISPRCasFinder	2199143-2199173	31	CP026968.1	1333303-1333333	2	0.935
CP026968_9	9.1\|2199143\|31\|CP026968\|CRISPRCasFinder	2199143-2199173	31	CP026968.1	1529398-1529428	2	0.935
CP026968_9	9.1\|2199143\|31\|CP026968\|CRISPRCasFinder	2199143-2199173	31	CP026968.1	1838269-1838299	2	0.935
CP026968_9	9.1\|2199143\|31\|CP026968\|CRISPRCasFinder	2199143-2199173	31	CP026968.1	2188342-2188372	2	0.935
CP026968_9	9.1\|2199143\|31\|CP026968\|CRISPRCasFinder	2199143-2199173	31	CP026968.1	2364356-2364386	2	0.935
CP026968_9	9.1\|2199143\|31\|CP026968\|CRISPRCasFinder	2199143-2199173	31	CP026968.1	2741935-2741965	2	0.935

1. spacer 3.1|693711|32|CP026968|CRISPRCasFinder matches to position: 730201-730232, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

2. spacer 3.1|693711|32|CP026968|CRISPRCasFinder matches to position: 1529403-1529434, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

3. spacer 3.1|693711|32|CP026968|CRISPRCasFinder matches to position: 1975352-1975383, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

4. spacer 3.1|693711|32|CP026968|CRISPRCasFinder matches to position: 2364350-2364381, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

5. spacer 3.1|693711|32|CP026968|CRISPRCasFinder matches to position: 2741929-2741960, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

6. spacer 6.1|1951295|34|CP026968|CRISPRCasFinder matches to position: 681089-681122, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

7. spacer 6.1|1951295|34|CP026968|CRISPRCasFinder matches to position: 1034600-1034633, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

8. spacer 3.1|693711|32|CP026968|CRISPRCasFinder matches to position: 1245012-1245043, mismatch: 1, identity: 0.969

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaaactgactttccgc	Protospacer
*******************.************

9. spacer 4.1|729894|34|CP026968|CRISPRCasFinder matches to position: 1244934-1244967, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

10. spacer 5.1|1514760|33|CP026968|CRISPRCasFinder matches to position: 1244935-1244967, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

11. spacer 6.1|1951295|34|CP026968|CRISPRCasFinder matches to position: 1634757-1634790, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

12. spacer 9.1|2199143|31|CP026968|CRISPRCasFinder matches to position: 693661-693691, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

13. spacer 3.1|693711|32|CP026968|CRISPRCasFinder matches to position: 1034785-1034816, mismatch: 2, identity: 0.938

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacatttttgtaagctgacttttcgc	Protospacer
************ ***************.***

14. spacer 3.1|693711|32|CP026968|CRISPRCasFinder matches to position: 1034841-1034872, mismatch: 2, identity: 0.938

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacatttttgtaagctgacttttcgc	Protospacer
************ ***************.***

15. spacer 3.1|693711|32|CP026968|CRISPRCasFinder matches to position: 1034897-1034928, mismatch: 2, identity: 0.938

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacatttttgtaagctgactttgcgc	Protospacer
************ *************** ***

16. spacer 6.1|1951295|34|CP026968|CRISPRCasFinder matches to position: 1249308-1249341, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

17. spacer 6.1|1951295|34|CP026968|CRISPRCasFinder matches to position: 2639950-2639983, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

18. spacer 9.1|2199143|31|CP026968|CRISPRCasFinder matches to position: 243670-243700, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

19. spacer 9.1|2199143|31|CP026968|CRISPRCasFinder matches to position: 516284-516314, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

20. spacer 9.1|2199143|31|CP026968|CRISPRCasFinder matches to position: 730207-730237, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

21. spacer 9.1|2199143|31|CP026968|CRISPRCasFinder matches to position: 937494-937524, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

22. spacer 9.1|2199143|31|CP026968|CRISPRCasFinder matches to position: 937610-937640, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

23. spacer 9.1|2199143|31|CP026968|CRISPRCasFinder matches to position: 1038737-1038767, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

24. spacer 9.1|2199143|31|CP026968|CRISPRCasFinder matches to position: 1244893-1244923, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

25. spacer 9.1|2199143|31|CP026968|CRISPRCasFinder matches to position: 1333303-1333333, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

26. spacer 9.1|2199143|31|CP026968|CRISPRCasFinder matches to position: 1529398-1529428, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

27. spacer 9.1|2199143|31|CP026968|CRISPRCasFinder matches to position: 1838269-1838299, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

28. spacer 9.1|2199143|31|CP026968|CRISPRCasFinder matches to position: 2188342-2188372, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

29. spacer 9.1|2199143|31|CP026968|CRISPRCasFinder matches to position: 2364356-2364386, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

30. spacer 9.1|2199143|31|CP026968|CRISPRCasFinder matches to position: 2741935-2741965, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026968_2	2.1\|686526\|29\|CP026968\|CRISPRCasFinder	686526-686554	29	KU160494	Vibrio phage vB_VmeM-32, complete genome	52113-52141	6	0.793
CP026968_8	8.1\|2091101\|34\|CP026968\|CRISPRCasFinder	2091101-2091134	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
CP026968_8	8.1\|2091101\|34\|CP026968\|CRISPRCasFinder	2091101-2091134	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765
CP026968_2	2.1\|686526\|29\|CP026968\|CRISPRCasFinder	686526-686554	29	AX059140	Sequence 1 from Patent WO0075335	5578-5606	11	0.621
CP026968_2	2.1\|686526\|29\|CP026968\|CRISPRCasFinder	686526-686554	29	NC_004735	Rhodothermus phage RM378, complete genome	5578-5606	11	0.621

1. spacer 2.1|686526|29|CP026968|CRISPRCasFinder matches to KU160494 (Vibrio phage vB_VmeM-32, complete genome) position: , mismatch: 6, identity: 0.793

cctgtagaatttcttttcgaaattctctt	CRISPR spacer
ctattggaatttcttctccaaattctctt	Protospacer
*.  *.*********.** **********

2. spacer 8.1|2091101|34|CP026968|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **

3. spacer 8.1|2091101|34|CP026968|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

4. spacer 2.1|686526|29|CP026968|CRISPRCasFinder matches to AX059140 (Sequence 1 from Patent WO0075335) position: , mismatch: 11, identity: 0.621

cctgtagaatttcttttcgaaattctctt--	CRISPR spacer
--aatagaatttcgaaacgaaattcatcttt	Protospacer
   .*********    ******** ..*

5. spacer 2.1|686526|29|CP026968|CRISPRCasFinder matches to NC_004735 (Rhodothermus phage RM378, complete genome) position: , mismatch: 11, identity: 0.621

cctgtagaatttcttttcgaaattctctt--	CRISPR spacer
--aatagaatttcgaaacgaaattcatcttt	Protospacer
   .*********    ******** ..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

178638 : 223010

Staphylococcus_phage(92.86%)

integrase,holin,terminase,portal,head,tail,capsid,protease

attL 178528:178545|attR 223088:223105

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
178528:178545	attL	NA	NA	NA	NA
AVG68251.1\|178638_179844_-\|integrase	site-specific integrase	A0A1X9H094	Staphylococcus_phage	2.1e-220	98.8
AVG68252.1\|179969_180584_+	ATPase	A7TW88	Staphylococcus_phage	7.9e-107	100.0
AVG68253.1\|180580_180727_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.1e-14	89.6
AVG68254.1\|180816_181212_-	hypothetical protein	I1W601	Staphylococcus_phage	1.4e-69	100.0
AVG68255.1\|181240_181675_-	hypothetical protein	A0A2I6PEM0	Staphylococcus_phage	3.5e-24	99.3
AVG68256.1\|181692_182154_-	toxin	A0A2K9VBR7	Staphylococcus_phage	1.2e-83	100.0
AVG68257.1\|182166_182481_-	XRE family transcriptional regulator	A0A0N9BAW4	Staphylococcus_phage	9.8e-53	100.0
AVG68258.1\|182632_182869_+	XRE family transcriptional regulator	A0A2I6PD81	Staphylococcus_phage	1.5e-37	100.0
AVG68259.1\|182882_183659_+	transcriptional regulator	A0A2I6PD87	Staphylococcus_phage	1.4e-140	99.6
AVG68260.1\|183687_183831_+	hypothetical protein	W5R8I6	Staphylococcus_phage	2.5e-16	100.0
AVG68261.1\|183820_184030_-	hypothetical protein	W5R9J5	Staphylococcus_phage	1.2e-30	100.0
AVG68262.1\|184085_184331_+	DUF2829 domain-containing protein	A0A2I6PF15	Staphylococcus_phage	5.1e-41	100.0
AVG68263.1\|184299_184665_-	hypothetical protein	A0A2I6PF07	Staphylococcus_phage	1.2e-62	99.2
AVG68264.1\|184719_184935_+	hypothetical protein	A0A2I6PF01	Staphylococcus_phage	1.9e-31	100.0
AVG68265.1\|184959_185223_+	helix-turn-helix domain-containing protein	A7TWG0	Staphylococcus_phage	5.7e-46	100.0
AVG68266.1\|185236_185398_+	DUF1270 domain-containing protein	A0A2H4PQQ1	Staphylococcus_phage	1.2e-19	98.1
AVG68267.1\|185489_185750_+	DUF1108 domain-containing protein	Q4ZDA1	Staphylococcus_virus	1.2e-43	100.0
AVG68268.1\|185759_185981_+	DUF2483 domain-containing protein	A7TWM6	Staphylococcus_phage	3.2e-34	100.0
AVG68269.1\|185973_186597_+	DUF1071 domain-containing protein	A0A2H4PQQ6	Staphylococcus_phage	1.4e-114	100.0
AVG68270.1\|186596_187025_+	single-stranded DNA-binding protein	B2ZYV4	Staphylococcus_phage	3.9e-60	100.0
AVG68271.1\|187038_187713_+	hypothetical protein	A0A0E3XBQ6	Staphylococcus_phage	5.8e-127	98.2
AVG68272.1\|187819_188668_-	DUF4393 domain-containing protein	W5R9J9	Staphylococcus_phage	1.1e-159	99.6
AVG68273.1\|188731_189445_+	helix-turn-helix domain-containing protein	A0A1J0MGB2	Staphylococcus_phage	9.2e-91	79.3
AVG68274.1\|189454_190234_+	DNA replication protein DnaC	Q9G022	Staphylococcus_virus	2.4e-145	100.0
AVG68275.1\|190401_190623_+	hypothetical protein	A7TWN4	Staphylococcus_phage	1.3e-35	100.0
AVG68276.1\|191041_191227_+	DUF3113 domain-containing protein	A0A0H3U473	Staphylococcus_phage	4.1e-27	100.0
AVG68277.1\|191227_191845_+	hypothetical protein	A0A0H3U4U9	Staphylococcus_phage	4.2e-84	100.0
AVG68278.1\|191844_192099_+	DUF3310 domain-containing protein	Q6R831	Staphylococcus_virus	1.3e-42	100.0
AVG68279.1\|192098_192347_+	hypothetical protein	A0A2K9VBX5	Staphylococcus_phage	1.2e-40	100.0
AVG68280.1\|192360_192567_+	hypothetical protein	A0A0N9BAW9	Staphylococcus_phage	3.0e-34	100.0
AVG68281.1\|192569_192974_+	hypothetical protein	A0A0E3T8H9	Staphylococcus_phage	4.2e-72	100.0
AVG68282.1\|192970_193165_+	hypothetical protein	A0A0E3XCV8	Staphylococcus_phage	2.5e-27	100.0
AVG68283.1\|193529_193919_+	acetyltransferase	I1W604	Staphylococcus_phage	1.4e-69	100.0
AVG68284.1\|193911_194160_+	DUF1024 domain-containing protein	A0A2I6PEP2	Staphylococcus_phage	1.8e-38	98.8
AVG68285.1\|194152_194689_+	dUTPase	A0A2I6PEN6	Staphylococcus_phage	1.6e-95	100.0
AVG68286.1\|194725_194932_+	DUF1381 domain-containing protein	A0A2I6PEM9	Staphylococcus_phage	1.6e-19	100.0
AVG68287.1\|194928_195132_+	hypothetical protein	A0A2I6PEQ8	Staphylococcus_phage	3.4e-30	100.0
AVG68288.1\|195124_195361_+	hypothetical protein	A0A2I6PEM4	Staphylococcus_phage	2.8e-36	100.0
AVG68289.1\|195344_195740_+	hypothetical protein	A7TWI1	Staphylococcus_phage	8.2e-65	99.2
AVG68290.1\|195736_195889_+	transcriptional regulator	A0A2I6PEM5	Staphylococcus_phage	2.0e-19	100.0
AVG68291.1\|195956_196157_+	DUF1514 domain-containing protein	A0A2I6PEP5	Staphylococcus_phage	4.9e-26	100.0
AVG68292.1\|196183_196390_-	hypothetical protein	A0A1X9IGZ9	Staphylococcus_phage	7.6e-30	100.0
AVG68293.1\|196444_197716_+	hypothetical protein	A0A2I6PEP4	Staphylococcus_phage	6.0e-133	96.3
AVG68294.1\|197728_198166_+	transcriptional regulator	A0A2I6PDN2	Staphylococcus_phage	6.1e-77	100.0
AVG68295.1\|198327_198642_+	HNH endonuclease	A0A2I6PDR3	Staphylococcus_phage	8.5e-57	100.0
AVG68296.1\|198767_199073_+\|terminase	phage terminase small subunit P27 family	A0A2I6PDN6	Staphylococcus_phage	3.7e-49	100.0
AVG68297.1\|199062_200754_+\|terminase	terminase large subunit	A0A2I6PDP8	Staphylococcus_phage	0.0e+00	99.8
AVG68298.1\|200758_201997_+\|portal	phage portal protein	A0A2I6PEA6	Staphylococcus_phage	6.9e-235	100.0
AVG68299.1\|201980_202754_+\|protease	Clp protease ClpP	A0A2I6PE26	Staphylococcus_phage	4.9e-138	100.0
AVG68300.1\|202765_203929_+\|capsid	phage major capsid protein	A0A2I6PE62	Staphylococcus_phage	3.6e-217	100.0
AVG68301.1\|203997_204276_+\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PE36	Staphylococcus_phage	2.1e-46	100.0
AVG68302.1\|204287_204620_+	hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	6.2e-58	100.0
AVG68303.1\|204616_205018_+	hypothetical protein	A0A2I6PDD3	Staphylococcus_phage	6.2e-68	100.0
AVG68304.1\|205018_205414_+	DUF3168 domain-containing protein	A0A2I6PDD8	Staphylococcus_phage	2.6e-66	100.0
AVG68305.1\|205448_206090_+\|tail	phage tail protein	A0A2I6PE59	Staphylococcus_phage	1.0e-120	100.0
AVG68306.1\|206181_206637_+\|tail	phage tail protein	A0A2I6PER6	Staphylococcus_phage	5.7e-78	100.0
AVG68307.1\|206694_207045_+	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	1.1e-55	100.0
AVG68308.1\|207086_207245_+	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
AVG68309.1\|207258_213459_+\|tail	phage tail tape measure protein	A0A1X9IGU9	Staphylococcus_phage	0.0e+00	99.9
AVG68310.1\|213458_214283_+\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	4.1e-159	100.0
AVG68311.1\|214291_215875_+	peptidase	Q8SDP1	Staphylococcus_virus	7.1e-309	100.0
AVG68312.1\|215874_216165_+	hypothetical protein	A0A2I6PF46	Staphylococcus_phage	2.1e-49	100.0
AVG68313.1\|216180_218091_+	hypothetical protein	A0A2I6PF35	Staphylococcus_phage	0.0e+00	99.8
AVG68314.1\|218090_219557_+	DUF2479 domain-containing protein	A0A2I6PEI6	Staphylococcus_phage	2.4e-271	99.0
AVG68315.1\|219556_219946_+	hypothetical protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
AVG68316.1\|219938_220103_+	XkdX family protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
AVG68317.1\|220148_220448_+	DUF2951 domain-containing protein	M9QRV2	Staphylococcus_phage	5.9e-31	98.0
AVG68318.1\|220583_220886_+\|holin	phage holin	A0A2I6PET6	Staphylococcus_phage	7.0e-48	100.0
AVG68319.1\|220897_222352_+	CHAP domain-containing protein	B7T0L1	Staphylococcus_virus	2.5e-284	98.6
AVG68320.1\|222710_223010_+	hypothetical protein	A7TWL2	Staphylococcus_phage	8.4e-46	94.7
223088:223105	attR	NA	NA	NA	NA

DBSCAN-SWA_2

618295 : 626116

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG68683.1\|618295_619351_-	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
AVG68684.1\|619350_620037_-	DNA-binding response regulator	NA	NA	NA	NA
AVG68685.1\|620011_620485_-	DoxX family protein	NA	NA	NA	NA
AVG68686.1\|620827_621268_-	hypothetical protein	NA	NA	NA	NA
AVG68687.1\|621547_622132_-	hypothetical protein	NA	NA	NA	NA
AVG68688.1\|622230_622944_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AVG68689.1\|622947_623367_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
AVG68690.1\|623368_624037_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AVG68691.1\|624387_624981_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
AVG68692.1\|624964_626116_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	6.0e-23	35.7

DBSCAN-SWA_3

642043 : 652694

uncultured_Caudovirales_phage(62.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG68707.1\|642043_643549_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AVG68708.1\|643629_643875_-	hypothetical protein	NA	NA	NA	NA
AVG68709.1\|643904_644405_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AVG68710.1\|644424_645291_-	EamA/RhaT family transporter	NA	NA	NA	NA
AVG68711.1\|645675_645942_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA
AVG68712.1\|646091_646490_+	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AVG68713.1\|646452_648558_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AVG68714.1\|648675_649647_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AVG68715.1\|649827_649983_+	hypothetical protein	NA	NA	NA	NA
AVG70834.1\|650021_650993_+	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
AVG68716.1\|650979_651936_+	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AVG68717.1\|651932_652694_+	iron ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.5e-18	31.6

DBSCAN-SWA_4

738226 : 783868

Staphylococcus_phage(82.35%)

integrase,holin,terminase,portal,head,tail,capsid,plate

attL 736314:736330|attR 769779:769795

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
736314:736330	attL	NA	NA	NA	NA
AVG68807.1\|738226_739468_+	cysteine desulfurase	Q2XUY6	environmental_halophage	8.2e-111	44.8
AVG68808.1\|739457_739922_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
AVG68809.1\|740072_741470_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
AVG68810.1\|741537_742587_-\|integrase	site-specific integrase	A1KWY3	Staphylococcus_virus	4.5e-203	99.7
AVG68811.1\|742699_742879_+	excisionase	A0EWN7	Staphylococcus_virus	8.3e-25	100.0
AVG68812.1\|742858_743791_-	hypothetical protein	A0EWN8	Staphylococcus_virus	3.9e-174	100.0
AVG68813.1\|743822_744284_-	ImmA/IrrE family metallo-endopeptidase	A0A0H4J322	Staphylococcus_phage	1.6e-64	81.7
AVG68814.1\|744295_744628_-	XRE family transcriptional regulator	A0A1J0MFC1	Staphylococcus_phage	4.7e-37	73.6
AVG68815.1\|744820_745060_+	XRE family transcriptional regulator	A0A2H4J9X2	uncultured_Caudovirales_phage	2.6e-37	96.2
AVG68816.1\|745074_745863_+	phage antirepressor	R9QSV3	Staphylococcus_phage	1.2e-144	100.0
AVG68817.1\|745879_746074_+	hypothetical protein	Q4ZDS1	Staphylococcus_virus	4.6e-21	90.5
AVG68818.1\|746104_746248_+	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	1.8e-14	91.3
AVG68819.1\|746268_746826_-	hypothetical protein	A0A2H4IYS4	uncultured_Caudovirales_phage	1.7e-47	54.5
AVG68820.1\|746896_747118_+	hypothetical protein	A0A0F6N3I2	Staphylococcus_phage	9.6e-31	97.3
AVG68821.1\|747110_747272_+	DUF1270 domain-containing protein	A0A2H4PQQ1	Staphylococcus_phage	3.3e-20	100.0
AVG68822.1\|747363_747624_+	DUF1108 domain-containing protein	Q4ZBM7	Staphylococcus_phage	1.2e-43	100.0
AVG68823.1\|747633_747855_+	DUF2483 domain-containing protein	A7TWM6	Staphylococcus_phage	3.2e-34	100.0
AVG68824.1\|747847_748471_+	DUF1071 domain-containing protein	A0A2H4PQQ6	Staphylococcus_phage	1.4e-114	100.0
AVG68825.1\|748470_748899_+	single-stranded DNA-binding protein	B2ZYV4	Staphylococcus_phage	3.9e-60	100.0
AVG68826.1\|748912_749587_+	hypothetical protein	R4IH15	Staphylococcus_phage	1.4e-125	96.9
AVG68827.1\|749725_750007_-	hypothetical protein	A0A1W6JPU7	Staphylococcus_phage	2.6e-49	100.0
AVG70837.1\|750072_750843_+	replication protein	G4KNP0	Staphylococcus_phage	6.4e-122	100.0
AVG68828.1\|750852_751632_+	DNA replication protein DnaC	Q4ZD93	Staphylococcus_virus	1.1e-145	99.6
AVG68829.1\|751625_751784_+	hypothetical protein	A0A2H4PQI7	Staphylococcus_phage	4.5e-22	100.0
AVG68830.1\|751796_752018_+	hypothetical protein	A0A0H3U2V4	Staphylococcus_phage	8.4e-35	98.6
AVG68831.1\|752027_752432_+	DUF1064 domain-containing protein	A1KX76	Staphylococcus_virus	1.6e-68	99.3
AVG68832.1\|752436_752622_+	hypothetical protein	A0A0F6N3K7	Staphylococcus_phage	1.1e-27	100.0
AVG68833.1\|752622_752928_+	hypothetical protein	A0A0F6N4H9	Staphylococcus_phage	1.7e-49	100.0
AVG68834.1\|753055_753412_+	hypothetical protein	A0A0F6N3E3	Staphylococcus_phage	1.9e-60	99.2
AVG68835.1\|753415_753658_+	hypothetical protein	A0A0F6N3E1	Staphylococcus_phage	1.9e-40	98.8
AVG68836.1\|753666_754038_+	acetyltransferase	A0A0F6N3K4	Staphylococcus_phage	3.6e-54	100.0
AVG68837.1\|754030_754285_+	DUF1024 domain-containing protein	A0A2I6PE79	Staphylococcus_phage	6.5e-39	98.8
AVG68838.1\|754434_754971_+	dUTPase	A0A2I6PEN6	Staphylococcus_phage	4.6e-95	99.4
AVG68839.1\|755007_755214_+	DUF1381 domain-containing protein	A0A0F6N4I4	Staphylococcus_phage	1.1e-20	100.0
AVG68840.1\|755210_755405_+	hypothetical protein	S4SX95	Staphylococcus_phage	7.9e-29	100.0
AVG68841.1\|755401_755605_+	hypothetical protein	B2ZYX5	Staphylococcus_phage	8.8e-31	98.5
AVG68842.1\|755597_755771_+	transcriptional regulator	A0A0F6N3E7	Staphylococcus_phage	2.2e-22	100.0
AVG68843.1\|755771_755918_+	hypothetical protein	B2ZYX7	Staphylococcus_phage	2.2e-15	100.0
AVG68844.1\|755941_756364_+	DUF1492 domain-containing protein	A0A0F6N3E5	Staphylococcus_phage	1.2e-74	100.0
AVG70838.1\|756551_757046_+\|terminase	terminase small subunit	A0A0F6N3K6	Staphylococcus_phage	7.8e-89	100.0
AVG68845.1\|757048_758344_+\|terminase	PBSX family phage terminase large subunit	A0A0F6N3L3	Staphylococcus_phage	3.0e-257	100.0
AVG68846.1\|758354_759893_+\|portal	phage portal protein	A0A0F6N4I8	Staphylococcus_phage	2.4e-293	100.0
AVG68847.1\|759899_760895_+\|head	phage head morphogenesis protein	A0A0F6N3F1	Staphylococcus_phage	2.0e-184	100.0
AVG68848.1\|760967_761138_+	hypothetical protein	A0A0F6N3E9	Staphylococcus_phage	1.5e-23	100.0
AVG68849.1\|761246_761867_+	DUF4355 domain-containing protein	S4V984	Staphylococcus_phage	1.7e-69	98.5
AVG68850.1\|761880_762855_+\|capsid	phage major capsid protein	E0Y3L0	Staphylococcus_virus	2.2e-183	100.0
AVG68851.1\|762876_763164_+	hypothetical protein	S4V6D9	Staphylococcus_phage	1.4e-45	98.9
AVG68852.1\|763172_763505_+\|head,tail	phage head-tail adapter protein	A0A0F6N3F4	Staphylococcus_phage	5.5e-54	100.0
AVG68853.1\|763501_763804_+	hypothetical protein	A4ZFB6	Staphylococcus_virus	1.1e-50	100.0
AVG68854.1\|763803_764151_+	hypothetical protein	A0A0F6N3F5	Staphylococcus_phage	4.1e-60	100.0
AVG68855.1\|764162_764546_+	hypothetical protein	B2ZYZ0	Staphylococcus_phage	2.6e-68	100.0
AVG68856.1\|765207_765573_+\|tail	phage tail protein	A0A0F6N4J9	Staphylococcus_phage	1.8e-58	99.2
AVG68857.1\|765602_765947_+	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	2.5e-57	100.0
AVG68858.1\|765963_769431_+	hypothetical protein	A0A0F6N3F9	Staphylococcus_phage	4.2e-245	100.0
AVG68859.1\|769443_770391_+\|tail	phage tail family protein	A0A0F6N3L4	Staphylococcus_phage	2.8e-183	100.0
769779:769795	attR	NA	NA	NA	NA
AVG68860.1\|770399_772298_+	peptidase	A0A0F6N3M1	Staphylococcus_phage	0.0e+00	100.0
AVG68861.1\|772312_774223_+	hypothetical protein	A0A0F6N4K2	Staphylococcus_phage	0.0e+00	99.8
AVG68862.1\|774222_776046_+\|plate	phage baseplate upper protein	A0A0F6N3G2	Staphylococcus_phage	0.0e+00	99.8
AVG68863.1\|776045_776423_+	hypothetical protein	A0A0F6N3G4	Staphylococcus_phage	1.5e-60	100.0
AVG68864.1\|776426_776600_+	XkdX family protein	A0A0F6N3L7	Staphylococcus_phage	6.6e-27	100.0
AVG70839.1\|776639_776939_+	hypothetical protein	A0A0F6N3M6	Staphylococcus_phage	9.9e-47	100.0
AVG68865.1\|777075_778974_+	CHAP domain-containing protein	A0A0F6N4K6	Staphylococcus_phage	0.0e+00	100.0
AVG68866.1\|778986_780225_+	DUF2479 domain-containing protein	E0Y3M8	Staphylococcus_virus	5.0e-209	99.3
AVG68867.1\|780230_780626_+	hypothetical protein	A0A2H4PQP8	Staphylococcus_phage	1.8e-67	99.2
AVG68868.1\|780681_780957_+\|holin	phage holin	A0A0F6N3M0	Staphylococcus_phage	8.6e-45	100.0
AVG68869.1\|780943_782356_+	CHAP domain-containing protein	A0A0F6N3N1	Staphylococcus_phage	5.8e-286	100.0
AVG68870.1\|782415_782973_-	hypothetical protein	A0A0F6N4L1	Staphylococcus_phage	7.4e-96	100.0
AVG68871.1\|783347_783500_+	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	3.1e-20	100.0
AVG68872.1\|783570_783681_+	hypothetical protein	W5R8J7	Staphylococcus_phage	1.7e-12	100.0
AVG68873.1\|783667_783868_+	hypothetical protein	W5R9N2	Staphylococcus_phage	3.7e-29	100.0

DBSCAN-SWA_5

866952 : 920076

Streptococcus_phage(28.57%)

tRNA,bacteriocin,holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG68952.1\|866952_867942_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
AVG68953.1\|868235_868631_+	transcriptional regulator Spx	NA	NA	NA	NA
AVG68954.1\|869001_869721_+	adaptor protein MecA	NA	NA	NA	NA
AVG68955.1\|869841_870828_+	competence protein CoiA	NA	NA	NA	NA
AVG68956.1\|870875_872684_+	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	5.5e-47	24.5
AVG68957.1\|873143_873950_-	DsbA family protein	NA	NA	NA	NA
AVG68958.1\|873972_874338_-	globin	NA	NA	NA	NA
AVG68959.1\|874441_875035_-	CYTH domain-containing protein	NA	NA	NA	NA
AVG68960.1\|875220_875568_+	hypothetical protein	NA	NA	NA	NA
AVG68961.1\|875584_876220_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA
AVG68962.1\|876236_877046_+	NAD(+) kinase	NA	NA	NA	NA
AVG68963.1\|877042_877897_+	RluA family pseudouridine synthase	NA	NA	NA	NA
AVG68964.1\|877917_879303_+	magnesium transporter	NA	NA	NA	NA
AVG68965.1\|879312_881157_+	sodium:proton antiporter	NA	NA	NA	NA
AVG68966.1\|881434_882205_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA
AVG68967.1\|882401_883487_-	AI-2E family transporter	NA	NA	NA	NA
AVG68968.1\|883828_885397_+	alanine:cation symporter family protein	NA	NA	NA	NA
AVG68969.1\|885541_886300_+	esterase family protein	NA	NA	NA	NA
AVG68970.1\|886493_887003_+	hypothetical protein	NA	NA	NA	NA
AVG68971.1\|887115_888324_-	MFS transporter	NA	NA	NA	NA
AVG68972.1\|888283_889459_-	diacylglycerol beta-glucosyltransferase	NA	NA	NA	NA
AVG68973.1\|889891_891376_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA
AVG68974.1\|891356_891617_+	hypothetical protein	NA	NA	NA	NA
AVG68975.1\|891616_893179_+	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	2.2e-36	28.2
AVG68976.1\|893480_894284_+	hypothetical protein	S5MAL1	Bacillus_phage	1.6e-30	40.5
AVG68977.1\|894502_896827_+	PDZ domain-containing protein	W5SAB9	Pithovirus	2.8e-11	27.4
AVG68978.1\|896843_898202_+	Ktr system potassium uptake protein D	NA	NA	NA	NA
AVG68979.1\|898340_899852_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
AVG68980.1\|900338_900908_-	competence protein ComK	NA	NA	NA	NA
AVG68981.1\|901117_901336_+	IDEAL domain-containing protein	NA	NA	NA	NA
AVG68982.1\|901416_902403_-	lipoate--protein ligase	NA	NA	NA	NA
AVG68983.1\|902601_902778_+	DUF2187 domain-containing protein	NA	NA	NA	NA
AVG68984.1\|902792_903395_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AVG70841.1\|903694_903772_+\|holin	putative holin-like toxin	NA	NA	NA	NA
AVG68985.1\|904310_904412_+	hypothetical protein	NA	NA	NA	NA
AVG70842.1\|904421_904694_+\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
AVG68986.1\|904737_906702_+	DUF1430 domain-containing protein	NA	NA	NA	NA
AVG68987.1\|906704_907025_+	hypothetical protein	NA	NA	NA	NA
AVG68988.1\|907021_907663_+\|bacteriocin	bacteriocin ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-19	33.0
AVG68989.1\|907750_908041_-	hypothetical protein	NA	NA	NA	NA
AVG68990.1\|908181_908319_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA
AVG68991.1\|908407_908764_-	DoxX family protein	NA	NA	NA	NA
AVG68992.1\|909251_910211_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AVG68993.1\|910256_910388_-	hypothetical protein	NA	NA	NA	NA
AVG68994.1\|910451_910742_-	NINE protein	A0A060AN66	Enterococcus_phage	7.5e-07	38.0
AVG68995.1\|910831_911383_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AVG68996.1\|911434_912373_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
AVG68997.1\|912523_912628_+	hypothetical protein	NA	NA	NA	NA
AVG68998.1\|912704_913916_+	isochorismate synthase	NA	NA	NA	NA
AVG68999.1\|913902_915576_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	NA	NA	NA	NA
AVG69000.1\|915562_916366_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
AVG69001.1\|916358_917180_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
AVG69002.1\|917417_917747_-	staphostatin B	NA	NA	NA	NA
AVG69003.1\|917784_918966_-\|protease	cysteine protease staphopain B	NA	NA	NA	NA
AVG69004.1\|919047_920076_-\|protease	serine protease	A0A2H4PQP7	Staphylococcus_phage	6.3e-16	32.3

DBSCAN-SWA_6

939120 : 947593

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG69020.1\|939120_939603_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
AVG69021.1\|939589_940714_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AVG69022.1\|940717_941422_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AVG69023.1\|941421_941685_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AVG69024.1\|941686_942358_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AVG69025.1\|942350_944540_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.5e-141	39.8
AVG69026.1\|944518_946003_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.7
AVG69027.1\|945995_947024_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
AVG69028.1\|947026_947593_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_7

1564403 : 1573446

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG69597.1\|1564403_1564922_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
AVG69598.1\|1564943_1567217_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	8.1e-64	29.3
AVG69599.1\|1567419_1569699_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AVG69600.1\|1569973_1570234_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AVG69601.1\|1570252_1571392_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AVG69602.1\|1571414_1572440_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AVG69603.1\|1572441_1573446_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_8

1687474 : 1758693

Staphylococcus_phage(95.74%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG69708.1\|1687474_1688119_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
AVG69709.1\|1688133_1688925_-	phosphotransferase	NA	NA	NA	NA
AVG69710.1\|1689474_1690323_-	D-amino-acid transaminase	NA	NA	NA	NA
AVG69711.1\|1690326_1691736_-	dipeptidase PepV	NA	NA	NA	NA
AVG69712.1\|1692293_1692716_-	YtxH domain-containing protein	NA	NA	NA	NA
AVG69713.1\|1692732_1693428_-	rRNA pseudouridine synthase	NA	NA	NA	NA
AVG69714.1\|1693424_1695086_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
AVG69715.1\|1695492_1696761_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	9.1e-57	99.1
AVG69716.1\|1696877_1703438_-	YSIRK signal domain/LPXTG anchor domain surface protein	A0A2H4PQU6	Staphylococcus_phage	6.1e-306	98.3
AVG69717.1\|1703763_1704075_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	4.8e-52	99.0
AVG69718.1\|1704096_1706514_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.5
AVG69719.1\|1706801_1707983_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	7.3e-218	99.7
AVG69720.1\|1708092_1709046_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AVG69721.1\|1709042_1709606_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AVG69722.1\|1709728_1710130_-	MarR family transcriptional regulator	NA	NA	NA	NA
AVG69723.1\|1710701_1711529_-	alpha/beta hydrolase	NA	NA	NA	NA
AVG69724.1\|1711531_1711651_-	hypothetical protein	NA	NA	NA	NA
AVG69725.1\|1711762_1712764_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	2.6e-184	99.4
AVG69726.1\|1712885_1713350_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
AVG69727.1\|1713362_1714544_-	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	5.6e-226	99.5
AVG69728.1\|1714554_1715187_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.5e-111	98.6
AVG70867.1\|1715193_1716225_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.0e-196	98.8
AVG69729.1\|1716717_1718220_-	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
AVG69730.1\|1718742_1719057_+	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
AVG69731.1\|1719056_1720349_+	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
AVG69732.1\|1720435_1721290_-	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AVG69733.1\|1721565_1721790_-	hypothetical protein	NA	NA	NA	NA
AVG69734.1\|1721988_1722459_+	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	8.8e-82	98.1
AVG69735.1\|1722571_1723015_+	competence protein ComK	NA	NA	NA	NA
AVG69736.1\|1723001_1723445_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
AVG69737.1\|1723740_1724376_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AVG69738.1\|1724815_1725529_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AVG69739.1\|1725788_1726091_+	hypothetical protein	NA	NA	NA	NA
AVG69740.1\|1726346_1726712_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AVG69741.1\|1726708_1727062_+	camphor resistance protein CrcB	A0A2H4PQQ7	Staphylococcus_phage	3.8e-21	94.0
AVG69742.1\|1728664_1729498_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	7.8e-158	99.3
AVG69743.1\|1729709_1730618_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
AVG69744.1\|1730739_1731936_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
AVG69745.1\|1732307_1733900_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AVG70868.1\|1734277_1735024_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	1.4e-142	98.8
AVG69746.1\|1735028_1735502_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	7.2e-84	98.7
AVG69747.1\|1735567_1735825_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AVG69748.1\|1735821_1736823_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.6e-184	97.0
AVG69749.1\|1736827_1738306_-	2-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.8e-283	97.6
AVG70869.1\|1738464_1738920_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	3.6e-80	99.3
AVG69750.1\|1739222_1739873_+	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	2.9e-51	94.0
AVG69751.1\|1739953_1740949_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	2.6e-67	97.9
AVG69752.1\|1741023_1741650_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	2.0e-73	79.3
AVG69753.1\|1741690_1742032_+	DUF3969 domain-containing protein	A0A2H4PQN6	Staphylococcus_phage	1.1e-54	94.7
AVG69754.1\|1742132_1742705_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	2.3e-23	93.1
AVG69755.1\|1744277_1744379_+	hypothetical protein	NA	NA	NA	NA
AVG69756.1\|1745454_1746684_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	4.0e-134	64.7
AVG69757.1\|1746676_1748416_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	2.4e-289	100.0
AVG69758.1\|1748396_1748531_-	hypothetical protein	NA	NA	NA	NA
AVG69759.1\|1748593_1749313_-\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.9e-131	99.6
AVG69760.1\|1749414_1749522_+	hypothetical protein	NA	NA	NA	NA
AVG69761.1\|1749470_1750190_-\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
AVG69762.1\|1750310_1751030_-\|protease	serine protease	A0A2H4PQP7	Staphylococcus_phage	6.6e-129	98.3
AVG69763.1\|1751087_1751810_-\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	3.5e-130	98.3
AVG69764.1\|1751934_1752642_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	7.9e-127	97.0
AVG69765.1\|1753077_1753296_-	hypothetical protein	NA	NA	NA	NA
AVG69766.1\|1753605_1754187_+	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	2.8e-53	64.2
AVG69767.1\|1754659_1754878_-	hypothetical protein	A0A2H4PQH0	Staphylococcus_phage	2.0e-25	80.6
AVG69768.1\|1755133_1755607_+	hypothetical protein	NA	NA	NA	NA
AVG69769.1\|1755611_1756403_+	DUF1828 domain-containing protein	NA	NA	NA	NA
AVG69770.1\|1756772_1757756_-	bi-component leukocidin LukED subunit D	A0A2H4PQH7	Staphylococcus_phage	1.8e-185	99.4
AVG69771.1\|1757757_1758693_-	beta-channel forming cytolysin	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0

DBSCAN-SWA_9

1852514 : 1949391

121

Staphylococcus_phage(83.13%)

tRNA,integrase,holin,transposase,terminase,head,portal,tail,capsid,protease

attL 1848951:1848975|attR 1951336:1951360

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1848951:1848975	attL	NA	NA	NA	NA
AVG69857.1\|1852514_1852817_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	NA	NA	NA	NA
AVG69858.1\|1853183_1854722_+	sodium:proline symporter	NA	NA	NA	NA
AVG69859.1\|1854810_1856010_-	CamS family sex pheromone protein	NA	NA	NA	NA
AVG69860.1\|1856022_1858026_-	DNA ligase (NAD(+)) LigA	A0A0K2QQN8	Ralstonia_phage	1.2e-114	36.2
AVG69861.1\|1858029_1860222_-	DNA helicase PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
AVG69862.1\|1860218_1860911_-	geranylgeranylglyceryl/heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA
AVG69863.1\|1861082_1861385_-	hypothetical protein	NA	NA	NA	NA
AVG69864.1\|1861493_1862789_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
AVG69865.1\|1863648_1864815_+\|protease	cysteine protease staphopain A	NA	NA	NA	NA
AVG69866.1\|1864845_1865172_+	staphostatin A	NA	NA	NA	NA
AVG69867.1\|1865463_1865637_-	NETI motif-containing protein	NA	NA	NA	NA
AVG69868.1\|1865617_1866220_-	DUF2179 domain-containing protein	NA	NA	NA	NA
AVG69869.1\|1866490_1867312_-	NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7
AVG69870.1\|1867304_1868774_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	5.9e-108	45.1
AVG69871.1\|1868957_1870034_+	nitric oxide synthase oxygenase	NA	NA	NA	NA
AVG69872.1\|1870053_1870848_+	ACT domain-containing protein	NA	NA	NA	NA
AVG69873.1\|1870919_1871027_+	hypothetical protein	NA	NA	NA	NA
AVG69874.1\|1871037_1872600_-	sodium-dependent dicarboxylate transporter SdcS	NA	NA	NA	NA
AVG69875.1\|1872804_1873902_-	pectate lyase	U5PWM6	Bacillus_phage	1.3e-46	34.3
AVG69876.1\|1874270_1874831_+	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
AVG69877.1\|1874883_1875813_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
AVG69878.1\|1876005_1876179_-	hypothetical protein	NA	NA	NA	NA
AVG69879.1\|1876230_1877610_+	aldehyde dehydrogenase	NA	NA	NA	NA
AVG69880.1\|1877729_1878758_-	hypothetical protein	NA	NA	NA	NA
AVG69881.1\|1879216_1879597_-	penicillinase repressor BlaI	NA	NA	NA	NA
AVG69882.1\|1879586_1881344_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA
AVG69883.1\|1881450_1882296_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	A0A1B0VBP7	Salmonella_phage	4.4e-31	33.9
AVG69884.1\|1882600_1883020_+	YolD-like family protein	U3PG23	Staphylococcus_phage	3.1e-30	53.5
AVG69885.1\|1884436_1884802_-\|transposase	transposase	NA	NA	NA	NA
AVG70874.1\|1884810_1886838_-\|transposase	transposase	NA	NA	NA	NA
AVG69886.1\|1886876_1888028_-\|transposase	transposase	P97010	Streptococcus_pyogenes_phage	1.8e-11	31.6
AVG69887.1\|1889050_1889224_-	hypothetical protein	NA	NA	NA	NA
AVG69888.1\|1889674_1890715_+	linear amide C-N hydrolase	NA	NA	NA	NA
AVG69889.1\|1890771_1891614_-	hypothetical protein	NA	NA	NA	NA
AVG69890.1\|1891610_1892168_-	DUF1700 domain-containing protein	NA	NA	NA	NA
AVG69891.1\|1892227_1892752_-	hypothetical protein	NA	NA	NA	NA
AVG69892.1\|1892872_1893436_+	thioredoxin family protein	NA	NA	NA	NA
AVG69893.1\|1893501_1894242_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
AVG69894.1\|1894241_1895114_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	1.0e-27	36.0
AVG69895.1\|1895110_1895791_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
AVG69896.1\|1895791_1896688_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	5.0e-17	30.2
AVG69897.1\|1896684_1897065_-	GntR family transcriptional regulator	NA	NA	NA	NA
AVG69898.1\|1897322_1897499_-	hypothetical protein	NA	NA	NA	NA
AVG69899.1\|1897741_1897840_-	hypothetical protein	NA	NA	NA	NA
AVG69900.1\|1898039_1899326_+	aspartate aminotransferase	NA	NA	NA	NA
AVG69901.1\|1899604_1899895_-	MAP domain-containing protein	NA	NA	NA	NA
AVG69902.1\|1899905_1901339_-	MAP domain-containing protein	NA	NA	NA	NA
AVG69903.1\|1901724_1901925_+	hypothetical protein	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0
AVG69904.1\|1902296_1902476_+	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
AVG69905.1\|1902499_1902808_+	hypothetical protein	M9NTD8	Staphylococcus_phage	9.3e-24	77.5
AVG69906.1\|1902786_1903047_+	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
AVG69907.1\|1903099_1903450_-	inhibitor	A7TWS0	Staphylococcus_phage	7.5e-54	100.0
AVG69908.1\|1904132_1904582_+	chemotaxis inhibitory protein	A0A075LZI2	Staphylococcus_phage	8.7e-79	100.0
AVG69909.1\|1904876_1905131_-	amidase	Q4ZCK0	Staphylococcus_virus	3.4e-11	90.7
AVG69910.1\|1905057_1905213_+	amidase	NA	NA	NA	NA
AVG69911.1\|1905659_1906151_-	kinase	A7TWR8	Staphylococcus_phage	8.0e-86	100.0
AVG69912.1\|1906341_1907097_-	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AVG69913.1\|1907108_1907363_-\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AVG69914.1\|1907414_1907522_+	hypothetical protein	NA	NA	NA	NA
AVG69915.1\|1907574_1907751_-\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	6.5e-22	96.6
AVG69916.1\|1907893_1908268_-	hypothetical protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
AVG69917.1\|1908323_1908611_-	hypothetical protein	C5I682	Staphylococcus_phage	9.9e-44	100.0
AVG69918.1\|1908656_1908809_-	hypothetical protein	A0A1W6JPL6	Staphylococcus_phage	7.6e-19	100.0
AVG69919.1\|1908801_1912584_-	hypothetical protein	A0A068A201	Staphylococcus_phage	0.0e+00	99.8
AVG69920.1\|1912599_1914084_-\|tail	phage tail protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
AVG69921.1\|1914080_1918610_-\|tail	phage tail tape measure protein	W5R8I2	Staphylococcus_phage	0.0e+00	95.0
AVG69922.1\|1918854_1919205_-	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
AVG69923.1\|1919254_1919479_-	hypothetical protein	A0A075LYE8	Staphylococcus_phage	3.0e-32	100.0
AVG69924.1\|1919520_1920165_-\|tail	phage tail protein	G4KNQ7	Staphylococcus_phage	6.5e-120	100.0
AVG69925.1\|1920165_1920573_-	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
AVG69926.1\|1920569_1920974_-	hypothetical protein	G4KNQ5	Staphylococcus_phage	4.3e-69	100.0
AVG69927.1\|1920970_1921333_-\|head,tail	phage head-tail adapter protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
AVG69928.1\|1921316_1921601_-\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
AVG69929.1\|1921590_1921875_-	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
AVG69930.1\|1921894_1923040_-\|capsid	phage major capsid protein	G4KNQ3	Staphylococcus_phage	9.6e-215	100.0
AVG69931.1\|1923063_1923801_-\|protease	Clp protease ClpP	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
AVG69932.1\|1923784_1924972_-\|portal	phage portal protein	G4KNQ1	Staphylococcus_phage	4.6e-220	100.0
AVG69933.1\|1924987_1926649_-\|terminase	terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	98.6
AVG69934.1\|1926645_1926990_-	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AVG69935.1\|1927119_1927419_-	HNH endonuclease	A0EWY8	Staphylococcus_phage	4.6e-52	100.0
AVG69936.1\|1927650_1928067_-	transcriptional regulator	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
AVG69937.1\|1928094_1928295_-	hypothetical protein	A0A2I6PDV9	Staphylococcus_phage	1.4e-28	100.0
AVG69938.1\|1928294_1928444_-	transcriptional regulator	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
AVG69939.1\|1928440_1928827_-	hypothetical protein	A0A1X9IGZ2	Staphylococcus_phage	3.0e-64	100.0
AVG69940.1\|1928819_1929056_-	hypothetical protein	A0A2I6PEM4	Staphylococcus_phage	2.8e-36	100.0
AVG69941.1\|1929048_1929252_-	hypothetical protein	A0A2I6PEQ8	Staphylococcus_phage	3.4e-30	100.0
AVG69942.1\|1929248_1929455_-	DUF1381 domain-containing protein	A0A2I6PEM9	Staphylococcus_phage	1.6e-19	100.0
AVG69943.1\|1929491_1930025_-	dUTPase	A0A2I6PEN6	Staphylococcus_phage	8.7e-94	98.9
AVG69944.1\|1930646_1930898_-	DUF1024 domain-containing protein	G4KNP4	Staphylococcus_phage	4.1e-38	96.4
AVG69945.1\|1930890_1931241_-	acetyltransferase	A0A0F6N3K4	Staphylococcus_phage	2.2e-45	90.0
AVG69946.1\|1931249_1931492_-	hypothetical protein	A0A1P8L6E3	Staphylococcus_phage	3.0e-41	100.0
AVG69947.1\|1931495_1931864_-	hypothetical protein	A0A0H4J337	Staphylococcus_phage	6.3e-51	98.4
AVG69948.1\|1932290_1932509_-	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
AVG69949.1\|1932515_1933385_-	DnaD domain protein	A0EWX4	Staphylococcus_phage	5.9e-132	96.6
AVG69950.1\|1933414_1933885_-	single-stranded DNA-binding protein	S4V682	Staphylococcus_phage	3.1e-79	96.2
AVG69951.1\|1933885_1934503_-	MBL fold metallo-hydrolase	A0A1W6JPL3	Staphylococcus_phage	3.5e-86	99.4
AVG69952.1\|1934583_1935504_-	recombinase	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
AVG69953.1\|1935505_1937449_-	ATPase	I1W619	Staphylococcus_phage	0.0e+00	98.6
AVG69954.1\|1937457_1937721_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
AVG69955.1\|1937729_1937990_-	DUF1108 domain-containing protein	A0EWW8	Staphylococcus_phage	4.4e-43	96.5
AVG69956.1\|1937994_1938297_-	hypothetical protein	A0A0F6N3N3	Staphylococcus_phage	1.0e-46	97.0
AVG69957.1\|1938389_1938551_-	DUF1270 domain-containing protein	Q4ZAZ7	Staphylococcus_virus	2.5e-20	100.0
AVG69958.1\|1938547_1938868_-	DUF771 domain-containing protein	A0A1W6JPI1	Staphylococcus_phage	7.4e-56	100.0
AVG69959.1\|1938897_1939116_-	hypothetical protein	A0A068A2A3	Staphylococcus_phage	4.3e-31	98.6
AVG69960.1\|1939112_1939439_-	hypothetical protein	G4KNN2	Staphylococcus_phage	5.4e-54	100.0
AVG69961.1\|1939488_1939812_+	hypothetical protein	A0ZS13	Staphylococcus_virus	6.5e-52	99.1
AVG69962.1\|1939765_1940005_-	hypothetical protein	A0ZS12	Staphylococcus_virus	2.9e-33	100.0
AVG69963.1\|1940063_1940267_+	hypothetical protein	A0A2H4JBA9	uncultured_Caudovirales_phage	9.5e-17	66.1
AVG69964.1\|1940383_1941127_-	oxidoreductase	A0A0H3U319	Staphylococcus_phage	2.3e-137	100.0
AVG69965.1\|1941177_1941507_+	hypothetical protein	A0A0H3U4Z1	Staphylococcus_phage	3.9e-52	99.1
AVG69966.1\|1941495_1941711_-	DUF2829 domain-containing protein	A0A0H3U4C7	Staphylococcus_phage	4.8e-35	100.0
AVG69967.1\|1941726_1941990_-	XRE family transcriptional regulator	A0A2I6PF09	Staphylococcus_phage	7.2e-41	100.0
AVG69968.1\|1941986_1942160_-	transcriptional regulator	NA	NA	NA	NA
AVG69969.1\|1942122_1942836_+	XRE family transcriptional regulator	M9NUL0	Staphylococcus_phage	3.5e-130	99.6
AVG69970.1\|1942851_1943784_+	ATP-dependent helicase	A0A2I6PEZ7	Staphylococcus_phage	2.8e-172	99.7
AVG69971.1\|1943789_1944131_+	hypothetical protein	A0A2I6PF04	Staphylococcus_phage	4.6e-56	100.0
AVG69972.1\|1944334_1944517_+	hypothetical protein	M9NSW6	Staphylococcus_phage	4.1e-27	100.0
AVG69973.1\|1944616_1945081_+	hypothetical protein	A0EWV3	Staphylococcus_phage	1.1e-28	100.0
AVG69974.1\|1945139_1946177_+\|integrase	site-specific integrase	A0EWV2	Staphylococcus_phage	1.5e-179	99.7
AVG69975.1\|1947297_1948314_-	bi-component leukocidin LukGH subunit G	A0A1X9IGW5	Staphylococcus_phage	6.7e-26	30.2
AVG69976.1\|1948335_1949391_-	bi-component leukocidin LukGH subunit H	A0A1X9IGW5	Staphylococcus_phage	2.8e-35	34.3
1951336:1951360	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026968

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection