CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026069	Staphylococcus aureus strain NRS1 chromosome, complete genome	0 crisprs	WYL,cas3,DEDDh,csa3,DinG	0	0	11	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

967849 : 992793

Streptococcus_phage(78.95%)

integrase

attL 963757:963771|attR 979685:979699

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
963757:963771	attL	NA	NA	NA	NA
AUU55605.1\|967849_969316_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.2e-96	40.5
AUU55606.1\|969340_970882_+	GMP synthase (glutamine-hydrolyzing)	A0A1V0SH76	Hokovirus	1.2e-23	32.6
AUU55607.1\|970949_972143_-\|integrase	site-specific integrase	A0A0S2MV79	Bacillus_phage	8.3e-44	34.2
AUU55608.1\|972169_972370_-	DUF3173 domain-containing protein	NA	NA	NA	NA
AUU55609.1\|972867_973098_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	1.0e-27	78.9
AUU55610.1\|973094_973577_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	8.5e-48	68.6
AUU55611.1\|973705_973816_-	hypothetical protein	NA	NA	NA	NA
AUU55612.1\|974047_974401_+	XRE family transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	2.2e-53	89.7
AUU55613.1\|974743_976663_-	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	97.2
AUU55614.1\|976678_976765_-	tetracycline resistance protein	NA	NA	NA	NA
AUU57482.1\|977039_977978_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	1.1e-83	56.6
AUU55615.1\|977985_979008_-	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	2.4e-132	75.5
AUU55616.1\|979004_981032_-	hypothetical protein	A0A1S5SF30	Streptococcus_phage	5.1e-195	65.3
979685:979699	attR	NA	NA	NA	NA
AUU55617.1\|981028_983482_-	ATP/GTP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	78.9
AUU55618.1\|983465_983861_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	5.9e-47	72.6
AUU55619.1\|983932_984571_-	hypothetical protein	NA	NA	NA	NA
AUU55620.1\|984626_985127_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-54	63.0
AUU55621.1\|985187_985967_-	hypothetical protein	NA	NA	NA	NA
AUU55622.1\|986008_986230_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	3.1e-29	93.2
AUU55623.1\|986226_986517_-	hypothetical protein	NA	NA	NA	NA
AUU55624.1\|986513_987698_-	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	6.3e-161	68.1
AUU55625.1\|987879_989283_-	DUF87 domain-containing protein	A0A1S5SFB5	Streptococcus_phage	2.2e-176	66.5
AUU55626.1\|989304_990078_-	hypothetical protein	NA	NA	NA	NA
AUU55627.1\|990087_990465_-	DUF961 domain-containing protein	A0A1S5SF96	Streptococcus_phage	9.6e-47	76.4
AUU55628.1\|990485_990800_-	DUF961 domain-containing protein	A0A1S5SF38	Streptococcus_phage	1.2e-42	77.7
AUU55629.1\|990999_992793_-	ATP-dependent helicase	E3T5J8	Cafeteria_roenbergensis_virus	6.9e-26	23.8

DBSCAN-SWA_2

1314406 : 1322227

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU55922.1\|1314406_1315462_-	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
AUU55923.1\|1315461_1316148_-	DNA-binding response regulator	NA	NA	NA	NA
AUU55924.1\|1316122_1316596_-	DoxX family protein	NA	NA	NA	NA
AUU55925.1\|1316938_1317379_-	hypothetical protein	NA	NA	NA	NA
AUU55926.1\|1317658_1318243_-	hypothetical protein	NA	NA	NA	NA
AUU55927.1\|1318341_1319055_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AUU55928.1\|1319058_1319478_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
AUU55929.1\|1319479_1320148_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AUU55930.1\|1320498_1321092_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
AUU55931.1\|1321075_1322227_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	6.0e-23	35.7

DBSCAN-SWA_3

1334198 : 1348783

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU55941.1\|1334198_1335257_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7
AUU55942.1\|1335595_1336138_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AUU55943.1\|1336250_1336349_+	hypothetical protein	NA	NA	NA	NA
AUU55944.1\|1336524_1336692_+	nitrogen fixation protein NifR	NA	NA	NA	NA
AUU55945.1\|1336960_1337878_-	lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
AUU55946.1\|1337968_1338070_+	hypothetical protein	NA	NA	NA	NA
AUU55947.1\|1338147_1339653_-	peptide ABC transporter permease	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AUU55948.1\|1339718_1339964_-	hypothetical protein	NA	NA	NA	NA
AUU55949.1\|1339993_1340494_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AUU55950.1\|1340513_1341380_-	EamA/RhaT family transporter	NA	NA	NA	NA
AUU55951.1\|1341764_1342031_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA
AUU55952.1\|1342180_1342579_+	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AUU55953.1\|1342541_1344647_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AUU55954.1\|1344764_1345736_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AUU55955.1\|1345916_1346072_+	hypothetical protein	NA	NA	NA	NA
AUU57496.1\|1346110_1347082_+	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
AUU55956.1\|1347068_1348025_+	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AUU55957.1\|1348021_1348783_+	iron ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.5e-18	31.6

DBSCAN-SWA_4

1399918 : 1468954

Staphylococcus_phage(90.8%)

protease,terminase,holin,integrase,capsid,head,coat,tail,portal

attL 1395888:1395908|attR 1426990:1427010

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1395888:1395908	attL	NA	NA	NA	NA
AUU56005.1\|1399918_1402291_+	ribonuclease R	Q0GXV6	Lactococcus_phage	4.3e-92	38.8
AUU56006.1\|1402312_1402777_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	1.6e-80	98.7
AUU56007.1\|1403339_1404446_-\|integrase	site-specific integrase	H0UST3	Bacillus_phage	5.9e-76	44.2
AUU56008.1\|1404451_1405099_-	XRE family transcriptional regulator	NA	NA	NA	NA
AUU56009.1\|1405256_1405463_+	hypothetical protein	NA	NA	NA	NA
AUU56010.1\|1405498_1405726_+	XRE family transcriptional regulator	NA	NA	NA	NA
AUU56011.1\|1405722_1405869_+	pathogenicity island protein	NA	NA	NA	NA
AUU56012.1\|1405861_1406071_+	pathogenicity island protein	Q4ZE76	Staphylococcus_phage	2.2e-29	92.8
AUU56013.1\|1406073_1406391_+	DUF1474 domain-containing protein	Q4ZE75	Staphylococcus_phage	1.2e-18	48.1
AUU56014.1\|1406457_1407327_+	mobile element-associated protein	A0A1W6JQL5	Staphylococcus_phage	3.2e-162	96.9
AUU56015.1\|1407343_1408813_+	virulence-associated protein E	A0A1W6JQD6	Staphylococcus_phage	3.4e-289	99.6
AUU56016.1\|1409098_1409461_+	pathogenicity island protein	A0A1W6JQD5	Staphylococcus_phage	5.8e-65	98.3
AUU56017.1\|1409462_1409747_+	pathogenicity island protein	A0A1W6JQE4	Staphylococcus_phage	1.2e-49	100.0
AUU56018.1\|1409743_1410385_+	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	2.3e-104	87.8
AUU56019.1\|1410834_1411176_+	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	1.4e-57	99.1
AUU56020.1\|1411187_1411766_+	pathogenicity island protein	A0A2H4JBG0	uncultured_Caudovirales_phage	4.8e-29	38.9
AUU56021.1\|1411783_1412002_+	hypothetical protein	NA	NA	NA	NA
AUU56022.1\|1412052_1412580_+\|coat	spore coat protein	A0A1W6JQH7	Staphylococcus_phage	3.5e-87	97.1
AUU56023.1\|1412582_1412924_+	pathogenicity island protein	A0A1W6JQM3	Staphylococcus_phage	1.4e-57	99.1
AUU56024.1\|1412920_1413490_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	7.9e-101	97.4
AUU56025.1\|1413644_1414349_-	toxin	NA	NA	NA	NA
AUU56026.1\|1415227_1415788_-	hypothetical protein	Q4ZBG8	Staphylococcus_virus	5.4e-62	68.1
AUU56027.1\|1416574_1417375_+	enterotoxin	A0A097PAT7	Streptococcus_pyogenes_phage	6.1e-51	47.5
AUU56028.1\|1417543_1418266_-	exotoxin	A0A1X9H080	Staphylococcus_phage	2.1e-26	34.9
AUU56029.1\|1419282_1420590_-	TrkH family potassium uptake protein	NA	NA	NA	NA
AUU56030.1\|1420897_1422100_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
AUU56031.1\|1422535_1423591_+	bi-component leukocidin LukGH subunit H	A0A1X9IGW5	Staphylococcus_phage	7.4e-36	34.6
AUU56032.1\|1423612_1424629_+	bi-component leukocidin LukGH subunit G	A0A1X9IGW5	Staphylococcus_phage	6.7e-26	30.2
AUU56033.1\|1424866_1425691_-	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	5.7e-161	99.6
AUU56034.1\|1425747_1426785_-\|integrase	site-specific integrase	A0EWV2	Staphylococcus_phage	9.1e-180	100.0
AUU56035.1\|1426843_1427308_-	hypothetical protein	A0EWV3	Staphylococcus_phage	1.1e-28	100.0
1426990:1427010	attR	NA	NA	NA	NA
AUU56036.1\|1427407_1427590_-	hypothetical protein	M9NSW6	Staphylococcus_phage	4.1e-27	100.0
AUU56037.1\|1427634_1428492_-	restriction endonuclease	R9QTP0	Staphylococcus_phage	3.5e-161	99.6
AUU56038.1\|1428503_1429220_-	helix-turn-helix domain-containing protein	R9QTP6	Staphylococcus_phage	9.2e-131	100.0
AUU56039.1\|1429383_1429626_+	transcriptional regulator	Q9G038	Staphylococcus_virus	2.8e-39	100.0
AUU56040.1\|1429639_1429900_+	transcriptional regulator	A7TW91	Staphylococcus_phage	2.7e-40	100.0
AUU56041.1\|1429923_1430463_-	hypothetical protein	A7TW92	Staphylococcus_phage	1.7e-97	100.0
AUU56042.1\|1430519_1431275_+	oxidoreductase	A0A1P8L6G2	Staphylococcus_phage	3.3e-139	100.0
AUU56043.1\|1431290_1431488_+	hypothetical protein	A0A1W6JPV3	Staphylococcus_phage	1.2e-24	100.0
AUU56044.1\|1431518_1431659_+	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
AUU56045.1\|1431673_1432306_-	hypothetical protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
AUU56046.1\|1432360_1432681_+	DUF771 domain-containing protein	A0A2I6PDH6	Staphylococcus_phage	1.5e-56	100.0
AUU56047.1\|1432677_1432839_+	DUF1270 domain-containing protein	C8CGY5	Staphylococcus_phage	2.0e-17	88.7
AUU56048.1\|1432928_1433231_+	hypothetical protein	A0A0F6N3N3	Staphylococcus_phage	8.0e-28	62.0
AUU56049.1\|1433235_1433496_+	DUF1108 domain-containing protein	A0A2I6PEM2	Staphylococcus_phage	1.2e-40	93.0
AUU56050.1\|1433504_1433768_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
AUU56051.1\|1433776_1435720_+	ATPase	A0A2I6PDH3	Staphylococcus_phage	0.0e+00	98.0
AUU56052.1\|1435721_1436642_+	recombinase	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
AUU56053.1\|1436722_1437340_+	MBL fold metallo-hydrolase	S4SWA4	Staphylococcus_phage	9.1e-87	100.0
AUU56054.1\|1437340_1437811_+	Single-stranded DNA-binding protein 1	A0EWX3	Staphylococcus_phage	7.4e-81	99.4
AUU56055.1\|1437840_1438734_+	DnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	3.2e-141	100.0
AUU56056.1\|1438740_1438959_+	hypothetical protein	A0A2I6PDG4	Staphylococcus_phage	1.0e-37	100.0
AUU56057.1\|1438967_1439372_+	RusA family crossover junction endodeoxyribonuclease	A0A0H3U2W2	Staphylococcus_phage	1.4e-72	100.0
AUU56058.1\|1439384_1439753_+	hypothetical protein	A0A0H3U2T3	Staphylococcus_phage	2.0e-49	100.0
AUU56059.1\|1439756_1439999_+	hypothetical protein	A0A0H3U4B0	Staphylococcus_phage	1.6e-39	98.8
AUU56060.1\|1440007_1440379_+	acetyltransferase	A0ZS31	Staphylococcus_virus	3.6e-62	96.7
AUU56061.1\|1440371_1440608_+	DUF1024 domain-containing protein	A0A0H3U313	Staphylococcus_phage	5.3e-35	100.0
AUU56062.1\|1440597_1440840_+	hypothetical protein	A0A2I6PF40	Staphylococcus_phage	3.7e-36	100.0
AUU56063.1\|1440832_1441366_+	dUTP pyrophosphatase	A0A0H3U2T1	Staphylococcus_phage	1.6e-95	100.0
AUU56064.1\|1441402_1441576_+	hypothetical protein	S4SVD5	Staphylococcus_phage	3.6e-25	100.0
AUU56065.1\|1441592_1441799_+	DUF1381 domain-containing protein	S4V684	Staphylococcus_phage	2.8e-24	82.4
AUU57497.1\|1441946_1442147_+	hypothetical protein	A0A2I6PDV9	Staphylococcus_phage	1.4e-28	100.0
AUU56066.1\|1442174_1442591_+	transcriptional regulator	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
AUU56067.1\|1442822_1443122_+	HNH endonuclease	G4KNP8	Staphylococcus_phage	4.6e-52	100.0
AUU56068.1\|1443251_1443596_+	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AUU56069.1\|1443592_1445254_+\|terminase	terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
AUU56070.1\|1445269_1446457_+\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
AUU56071.1\|1446440_1447178_+\|protease	Clp protease ClpP	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
AUU56072.1\|1447201_1448347_+\|capsid	phage major capsid protein	G4KNQ3	Staphylococcus_phage	9.6e-215	100.0
AUU56073.1\|1448366_1448651_+	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
AUU56074.1\|1448640_1448925_+\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
AUU56075.1\|1448908_1449271_+\|head,tail	phage head-tail adapter protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
AUU56076.1\|1449267_1449672_+	hypothetical protein	G4KNQ5	Staphylococcus_phage	2.1e-68	99.3
AUU56077.1\|1449668_1450076_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
AUU56078.1\|1450076_1450721_+\|tail	phage tail protein	W5R9H4	Staphylococcus_phage	6.5e-120	100.0
AUU56079.1\|1450762_1450987_+	hypothetical protein	A0A075LYE8	Staphylococcus_phage	8.8e-32	98.6
AUU56080.1\|1451036_1451387_+	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
AUU56081.1\|1451631_1456161_+\|tail	phage tail tape measure protein	A0A1X9H084	Staphylococcus_phage	0.0e+00	100.0
AUU56082.1\|1456157_1457642_+\|tail	phage tail protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
AUU56083.1\|1457657_1461440_+	hypothetical protein	A0A1X9H096	Staphylococcus_phage	0.0e+00	99.5
AUU56084.1\|1461432_1461585_+	hypothetical protein	A0A1W6JPL6	Staphylococcus_phage	7.6e-19	100.0
AUU56085.1\|1461630_1461918_+	hypothetical protein	A0A1X9H0N7	Staphylococcus_phage	7.6e-44	100.0
AUU56086.1\|1461973_1462348_+	hypothetical protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
AUU56087.1\|1462720_1463494_+	enterotoxin	A0A1X9H080	Staphylococcus_phage	1.1e-145	100.0
AUU57498.1\|1463602_1463779_+\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
AUU56088.1\|1463831_1463939_-	hypothetical protein	NA	NA	NA	NA
AUU56089.1\|1463990_1464245_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AUU56090.1\|1464256_1464988_+	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	1.8e-145	99.2
AUU56091.1\|1465202_1465694_+	staphylokinase	A0A1W6JQ12	Staphylococcus_phage	4.7e-86	99.4
AUU56092.1\|1466140_1466296_-	amidase	NA	NA	NA	NA
AUU56093.1\|1466222_1466477_+	amidase	Q4ZCK0	Staphylococcus_virus	8.0e-13	93.0
AUU56094.1\|1466383_1466680_+	peptidoglycan hydrolase	A0A1P8L6B4	Staphylococcus_phage	1.6e-49	95.9
AUU56095.1\|1467190_1467541_+	inhibitor	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
AUU56096.1\|1467592_1467853_-	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
AUU56097.1\|1467831_1468140_-	hypothetical protein	M9NTD8	Staphylococcus_phage	3.2e-40	100.0
AUU56098.1\|1468163_1468343_-	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	1.4e-24	98.3
AUU56099.1\|1468714_1468954_-	phospholipase	A0A1P8L6A7	Staphylococcus_phage	2.0e-26	100.0

DBSCAN-SWA_5

1557937 : 1653887

100

Staphylococcus_phage(88.46%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU56182.1\|1557937_1559257_-\|transposase	ISL3-like element IS1181 family transposase	NA	NA	NA	NA
AUU56183.1\|1559840_1560902_+	PTS transporter subunit IIC	NA	NA	NA	NA
AUU56184.1\|1561159_1562617_+	glutamate ABC transporter permease	NA	NA	NA	NA
AUU56185.1\|1562603_1563332_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-36	42.7
AUU56186.1\|1563467_1564610_+	epoxyqueuosine reductase	NA	NA	NA	NA
AUU56187.1\|1564614_1565085_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
AUU56188.1\|1565243_1565843_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA
AUU56189.1\|1565867_1566020_+	hypothetical protein	NA	NA	NA	NA
AUU56190.1\|1566567_1566963_+	hypothetical protein	NA	NA	NA	NA
AUU56191.1\|1567158_1568544_+	class II fumarate hydratase	NA	NA	NA	NA
AUU56192.1\|1568996_1569818_-	RluA family pseudouridine synthase	NA	NA	NA	NA
AUU56193.1\|1569980_1571093_+	histidine kinase	NA	NA	NA	NA
AUU56194.1\|1571114_1571738_+	DNA-binding response regulator	NA	NA	NA	NA
AUU56195.1\|1572093_1572558_+	transcriptional regulator	NA	NA	NA	NA
AUU56196.1\|1572736_1573861_+	DUF445 domain-containing protein	NA	NA	NA	NA
AUU56197.1\|1573929_1574274_+	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	7.5e-06	29.7
AUU56198.1\|1574812_1574911_+	hypothetical protein	NA	NA	NA	NA
AUU56199.1\|1575201_1576398_+	exonuclease SbcCD subunit D	NA	NA	NA	NA
AUU56200.1\|1576387_1579324_+	DNA repair protein Rad50	NA	NA	NA	NA
AUU56201.1\|1579320_1580262_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA
AUU56202.1\|1580382_1581345_-	foldase	NA	NA	NA	NA
AUU56203.1\|1581549_1582107_-	DUF3267 domain-containing protein	NA	NA	NA	NA
AUU56204.1\|1582841_1583207_-	YtxH domain-containing protein	NA	NA	NA	NA
AUU56205.1\|1583348_1583771_-	HIT family protein	NA	NA	NA	NA
AUU56206.1\|1583904_1584645_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-24	29.8
AUU56207.1\|1584637_1585861_+	multidrug ABC transporter ATP-binding protein	NA	NA	NA	NA
AUU56208.1\|1585984_1586488_-	signal transduction protein TRAP	NA	NA	NA	NA
AUU56209.1\|1586650_1586761_+	hypothetical protein	NA	NA	NA	NA
AUU56210.1\|1586750_1587788_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
AUU56211.1\|1587845_1588769_+	ferrochelatase	NA	NA	NA	NA
AUU56212.1\|1588792_1590193_+	protoporphyrinogen oxidase	NA	NA	NA	NA
AUU56213.1\|1590194_1590422_-	hypothetical protein	NA	NA	NA	NA
AUU56214.1\|1590515_1591070_+	serine hydrolase family protein	NA	NA	NA	NA
AUU56215.1\|1592447_1593212_+	exotoxin	A0A1X9H080	Staphylococcus_phage	2.3e-31	37.1
AUU56216.1\|1593492_1594212_+	exotoxin	A0A1X9H080	Staphylococcus_phage	2.3e-25	35.8
AUU56217.1\|1594246_1594975_+	exotoxin	A0A1X9H080	Staphylococcus_phage	1.1e-27	39.2
AUU56218.1\|1595128_1595530_+	enterotoxin	A0A097PAT7	Streptococcus_pyogenes_phage	1.5e-10	37.9
AUU56219.1\|1595504_1595900_+	enterotoxin	A0A097PAT7	Streptococcus_pyogenes_phage	1.5e-26	50.4
AUU56220.1\|1595938_1596694_+	exotoxin	A0A075M4C7	Staphylococcus_phage	6.0e-40	41.4
AUU56221.1\|1596976_1597753_+	enterotoxin	NA	NA	NA	NA
AUU56222.1\|1597970_1598156_-	hypothetical protein	NA	NA	NA	NA
AUU56223.1\|1598304_1599081_-	DUF1828 domain-containing protein	NA	NA	NA	NA
AUU56224.1\|1599101_1599338_-	hypothetical protein	NA	NA	NA	NA
AUU56225.1\|1599415_1599910_-	hypothetical protein	NA	NA	NA	NA
AUU56226.1\|1600743_1601532_-	hypothetical protein	A0A2H4PQI0	Staphylococcus_phage	3.6e-144	98.5
AUU56227.1\|1602895_1603831_+	beta-channel forming cytolysin	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0
AUU56228.1\|1603832_1604816_+	bi-component leukocidin LukED subunit D	A0A2H4PQH7	Staphylococcus_phage	1.8e-185	99.4
AUU56229.1\|1605185_1605977_-	DUF1828 domain-containing protein	NA	NA	NA	NA
AUU56230.1\|1605981_1606455_-	hypothetical protein	NA	NA	NA	NA
AUU56231.1\|1606710_1606929_+	hypothetical protein	A0A2H4PQH0	Staphylococcus_phage	2.0e-25	80.6
AUU56232.1\|1607401_1607983_-	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	9.6e-54	64.8
AUU56233.1\|1608291_1608510_+	hypothetical protein	NA	NA	NA	NA
AUU56234.1\|1608945_1609653_+\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	7.9e-127	97.0
AUU56235.1\|1609777_1610500_+\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	3.5e-130	98.3
AUU56236.1\|1610557_1611277_+\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.3e-129	98.7
AUU56237.1\|1611397_1612117_+\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
AUU56238.1\|1612065_1612173_-	hypothetical protein	NA	NA	NA	NA
AUU56239.1\|1612274_1612994_+\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.9e-131	99.6
AUU56240.1\|1613056_1613191_+	hypothetical protein	NA	NA	NA	NA
AUU56241.1\|1613171_1614911_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	2.4e-289	100.0
AUU56242.1\|1614903_1616133_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	6.8e-134	64.7
AUU56243.1\|1617208_1617310_-	hypothetical protein	NA	NA	NA	NA
AUU56244.1\|1618882_1619455_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	2.3e-23	93.1
AUU56245.1\|1619555_1619897_-	DUF3969 domain-containing protein	A0A2H4PQN6	Staphylococcus_phage	1.1e-54	94.7
AUU56246.1\|1619937_1620564_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.1e-74	79.8
AUU56247.1\|1620638_1621634_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	2.6e-67	97.9
AUU56248.1\|1621714_1622365_-	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	2.9e-51	94.0
AUU57503.1\|1622667_1623123_+	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	3.6e-80	99.3
AUU56249.1\|1623281_1624760_+	2-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.8e-283	97.6
AUU56250.1\|1624764_1625766_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.3e-185	97.3
AUU56251.1\|1625762_1626020_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AUU56252.1\|1626085_1626559_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	7.2e-84	98.7
AUU57504.1\|1626563_1627310_+	dipeptidyl aminopeptidase	A0A2H4PQM6	Staphylococcus_phage	1.4e-142	98.8
AUU56253.1\|1627687_1629280_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AUU56254.1\|1629651_1630848_+	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
AUU56255.1\|1630969_1631878_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
AUU56256.1\|1632089_1632923_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	7.8e-158	99.3
AUU56257.1\|1634919_1635273_-	camphor resistance protein CrcB	A0A2H4PQQ7	Staphylococcus_phage	3.8e-21	94.0
AUU56258.1\|1635269_1635635_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AUU56259.1\|1635890_1636193_-	hypothetical protein	NA	NA	NA	NA
AUU56260.1\|1636452_1637166_+	transaldolase	M1PR54	Cyanophage	9.4e-19	35.3
AUU56261.1\|1637605_1638241_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AUU56262.1\|1638536_1638980_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
AUU56263.1\|1638966_1639410_-	competence protein ComK	NA	NA	NA	NA
AUU56264.1\|1639522_1639993_-	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	8.8e-82	98.1
AUU56265.1\|1640191_1640416_+	hypothetical protein	NA	NA	NA	NA
AUU56266.1\|1640691_1641546_+	autolysin	Q4ZCC7	Staphylococcus_virus	1.3e-38	38.6
AUU56267.1\|1641632_1642925_-	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
AUU56268.1\|1642924_1643239_-	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
AUU56269.1\|1643761_1645264_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
AUU57505.1\|1645756_1646788_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.0e-196	98.8
AUU56270.1\|1646794_1647427_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.5e-111	98.6
AUU56271.1\|1647437_1648619_+	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	5.6e-226	99.5
AUU56272.1\|1648631_1649096_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
AUU56273.1\|1649217_1650219_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	2.6e-184	99.4
AUU56274.1\|1650330_1650450_+	hypothetical protein	NA	NA	NA	NA
AUU56275.1\|1650452_1651280_+	alpha/beta hydrolase	NA	NA	NA	NA
AUU56276.1\|1651849_1652251_+	MarR family transcriptional regulator	NA	NA	NA	NA
AUU56277.1\|1652373_1652937_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AUU56278.1\|1652933_1653887_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0

DBSCAN-SWA_6

1736898 : 1795108

Staphylococcus_phage(15.38%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU56342.1\|1736898_1738218_-\|transposase	ISL3-like element IS1181 family transposase	NA	NA	NA	NA
AUU56343.1\|1738457_1739426_+	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA
AUU56344.1\|1739447_1741205_+	pyruvate kinase	A0A2H4PQU5	Staphylococcus_phage	2.6e-41	100.0
AUU56345.1\|1741552_1742914_-	amino acid permease	NA	NA	NA	NA
AUU56346.1\|1743261_1744383_+	citrate synthase	NA	NA	NA	NA
AUU56347.1\|1744431_1745700_+	isocitrate dehydrogenase (NADP(+))	NA	NA	NA	NA
AUU56348.1\|1745919_1746138_-	hypothetical protein	NA	NA	NA	NA
AUU56349.1\|1746089_1746794_+	DNA-binding response regulator	Q6XM27	Feldmannia_irregularis_virus	1.6e-07	28.7
AUU57508.1\|1746793_1748455_+	sensor histidine kinase	W8CYF6	Bacillus_phage	5.8e-35	39.4
AUU56350.1\|1748953_1750441_+	hypothetical protein	NA	NA	NA	NA
AUU56351.1\|1750734_1753365_+	DNA polymerase I	A8E2B3	Enterococcus_phage	6.1e-47	33.0
AUU56352.1\|1753380_1754253_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	G3MA33	Bacillus_virus	2.6e-42	39.1
AUU56353.1\|1754268_1754892_+	dephospho-CoA kinase	NA	NA	NA	NA
AUU56354.1\|1755061_1756087_+	aldehyde dehydrogenase	NA	NA	NA	NA
AUU56355.1\|1756297_1756768_+	transcriptional regulator NrdR	NA	NA	NA	NA
AUU56356.1\|1756768_1758169_+	helicase DnaB	NA	NA	NA	NA
AUU56357.1\|1758168_1759089_+	primosomal protein DnaI	S5MU12	Brevibacillus_phage	8.1e-31	29.4
AUU56358.1\|1759181_1759304_+	hypothetical protein	NA	NA	NA	NA
AUU56359.1\|1759501_1761439_+\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	5.0e-115	35.8
AUU56360.1\|1761864_1763358_+	amino acid permease	NA	NA	NA	NA
AUU57509.1\|1763586_1764114_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.1e-11	33.1
AUU56361.1\|1764142_1764343_+	50S ribosomal protein L35	NA	NA	NA	NA
AUU56362.1\|1764389_1764746_+	50S ribosomal protein L20	NA	NA	NA	NA
AUU56363.1\|1764887_1765496_+	NUDIX domain-containing protein	A0A060AB76	Staphylococcus_phage	6.6e-21	35.9
AUU56364.1\|1765514_1766444_+	hypothetical protein	NA	NA	NA	NA
AUU56365.1\|1766448_1766559_+	hypothetical protein	NA	NA	NA	NA
AUU56366.1\|1766606_1767908_+	trigger factor	NA	NA	NA	NA
AUU56367.1\|1768058_1769321_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.0e-140	62.0
AUU56368.1\|1769474_1770065_+	GTP-binding protein	NA	NA	NA	NA
AUU56369.1\|1770281_1771628_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
AUU56370.1\|1771649_1772465_+	cytochrome C assembly protein	NA	NA	NA	NA
AUU56371.1\|1772506_1773433_+	hydroxymethylbilane synthase	NA	NA	NA	NA
AUU56372.1\|1773454_1774123_+	uroporphyrinogen III synthase	NA	NA	NA	NA
AUU56373.1\|1774125_1775100_+	delta-aminolevulinic acid dehydratase	NA	NA	NA	NA
AUU56374.1\|1775147_1776434_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
AUU56375.1\|1776494_1776596_+	hypothetical protein	NA	NA	NA	NA
AUU56376.1\|1776629_1777703_+	aminopeptidase	NA	NA	NA	NA
AUU56377.1\|1777925_1778486_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
AUU56378.1\|1778888_1781519_+\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	2.8e-153	40.7
AUU56379.1\|1781531_1782803_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
AUU56380.1\|1782860_1782971_-	hypothetical protein	NA	NA	NA	NA
AUU56381.1\|1783072_1783780_+	prepilin peptidase	NA	NA	NA	NA
AUU56382.1\|1783776_1784331_+	JAB domain-containing protein	NA	NA	NA	NA
AUU56383.1\|1784449_1785535_+\|transposase	transposase	A0A0A8WIF9	Clostridium_phage	4.5e-12	28.3
AUU56384.1\|1785531_1787424_+\|transposase	transposase	NA	NA	NA	NA
AUU56385.1\|1787430_1787808_+\|transposase	transposase	NA	NA	NA	NA
AUU56386.1\|1787958_1788741_+	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NA	NA	NA	NA
AUU56387.1\|1788866_1789598_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	E4ZFQ0	Streptococcus_phage	1.9e-51	47.5
AUU56388.1\|1790131_1790794_+	SAM-dependent methyltransferase	NA	NA	NA	NA
AUU56389.1\|1791242_1791527_+	hypothetical protein	NA	NA	NA	NA
AUU56390.1\|1791643_1791841_-	hypothetical protein	NA	NA	NA	NA
AUU56391.1\|1792000_1792474_+	DUF4930 domain-containing protein	NA	NA	NA	NA
AUU56392.1\|1792547_1792667_+	hypothetical protein	NA	NA	NA	NA
AUU56393.1\|1792865_1793708_+	rod shape-determining protein MreC	NA	NA	NA	NA
AUU56394.1\|1793707_1794238_+	rod shape-determining protein MreD	NA	NA	NA	NA
AUU56395.1\|1794473_1794782_+	50S ribosomal protein L21	NA	NA	NA	NA
AUU56396.1\|1794787_1795108_+\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA

DBSCAN-SWA_7

1798165 : 1807208

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU56401.1\|1798165_1799170_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
AUU56402.1\|1799171_1800197_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AUU56403.1\|1800219_1801359_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AUU56404.1\|1801377_1801638_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AUU56405.1\|1801912_1804192_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AUU56406.1\|1804394_1806668_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	8.1e-64	29.3
AUU56407.1\|1806689_1807208_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5

DBSCAN-SWA_8

2425468 : 2433941

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU56979.1\|2425468_2426035_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1
AUU56980.1\|2426037_2427066_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
AUU56981.1\|2427058_2428543_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.7
AUU56982.1\|2428521_2430711_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.5e-141	39.8
AUU56983.1\|2430703_2431375_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AUU56984.1\|2431376_2431640_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AUU56985.1\|2431639_2432344_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AUU56986.1\|2432347_2433472_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AUU56987.1\|2433458_2433941_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7

DBSCAN-SWA_9

2452869 : 2470153

Staphylococcus_phage(33.33%)

holin,bacteriocin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU57003.1\|2452869_2453898_+\|protease	serine protease	A0A2H4PQP7	Staphylococcus_phage	6.3e-16	32.3
AUU57004.1\|2453979_2455161_+\|protease	cysteine protease staphopain B	NA	NA	NA	NA
AUU57005.1\|2455198_2455528_+	staphostatin B	NA	NA	NA	NA
AUU57006.1\|2455765_2456587_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
AUU57007.1\|2456579_2457383_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
AUU57008.1\|2457369_2459043_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	NA	NA	NA	NA
AUU57009.1\|2459029_2460241_-	isochorismate synthase	NA	NA	NA	NA
AUU57010.1\|2460317_2460422_-	hypothetical protein	NA	NA	NA	NA
AUU57011.1\|2460572_2461511_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
AUU57012.1\|2461562_2462114_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AUU57013.1\|2462203_2462494_+	NINE protein	A0A060AN66	Enterococcus_phage	7.5e-07	38.0
AUU57014.1\|2462557_2462689_+	hypothetical protein	NA	NA	NA	NA
AUU57015.1\|2462734_2463694_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUU57016.1\|2464181_2464538_+	DoxX family protein	NA	NA	NA	NA
AUU57017.1\|2464626_2464764_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA
AUU57018.1\|2464904_2465195_+	hypothetical protein	NA	NA	NA	NA
AUU57019.1\|2465282_2465924_-\|bacteriocin	bacteriocin ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-19	33.0
AUU57020.1\|2465920_2466241_-	hypothetical protein	NA	NA	NA	NA
AUU57021.1\|2466243_2468208_-	DUF1430 domain-containing protein	NA	NA	NA	NA
AUU57532.1\|2468251_2468524_-\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
AUU57022.1\|2468533_2468635_-	hypothetical protein	NA	NA	NA	NA
AUU57533.1\|2469173_2469251_-\|holin	putative holin-like toxin	NA	NA	NA	NA
AUU57023.1\|2469550_2470153_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_10

2580319 : 2637632

Staphylococcus_phage(78.57%)

terminase,holin,transposase,integrase,head,tail,portal

attL 2626805:2626821|attR 2635805:2635821

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUU57124.1\|2580319_2581639_-\|transposase	ISL3-like element IS1181 family transposase	NA	NA	NA	NA
AUU57125.1\|2581844_2582228_-	DUF1027 domain-containing protein	NA	NA	NA	NA
AUU57126.1\|2582357_2583275_-	lipoyl synthase	NA	NA	NA	NA
AUU57127.1\|2583358_2584678_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
AUU57128.1\|2584704_2585532_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
AUU57129.1\|2585544_2586393_-	DUF72 domain-containing protein	NA	NA	NA	NA
AUU57130.1\|2586440_2586524_-	hypothetical protein	NA	NA	NA	NA
AUU57131.1\|2586777_2587845_-	nitronate monooxygenase	NA	NA	NA	NA
AUU57132.1\|2587858_2588899_-	HlyC/CorC family transporter	NA	NA	NA	NA
AUU57133.1\|2589263_2589578_+	hypothetical protein	NA	NA	NA	NA
AUU57134.1\|2589676_2589907_+	hypothetical protein	NA	NA	NA	NA
AUU57135.1\|2590243_2590675_-	hypothetical protein	NA	NA	NA	NA
AUU57136.1\|2590667_2591300_-	DUF4065 domain-containing protein	NA	NA	NA	NA
AUU57137.1\|2591632_2591833_-	hypothetical protein	W5R9N2	Staphylococcus_phage	3.7e-29	100.0
AUU57138.1\|2591819_2591930_-	hypothetical protein	W5R8J7	Staphylococcus_phage	4.9e-12	97.2
AUU57139.1\|2592000_2592153_-	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	3.1e-20	100.0
AUU57140.1\|2592395_2593841_-	CHAP domain-containing protein	Q08JW9	Staphylococcus_phage	1.8e-295	99.8
AUU57141.1\|2593821_2594259_-\|holin	phage holin	Q8SDS8	Staphylococcus_phage	6.9e-73	99.3
AUU57142.1\|2594314_2594710_-	hypothetical protein	A0A0E3XBL9	Staphylococcus_phage	1.4e-67	97.7
AUU57143.1\|2594715_2595954_-	DUF2479 domain-containing protein	A0A0F6N3G7	Staphylococcus_phage	2.7e-207	98.1
AUU57144.1\|2595966_2597865_-	CHAP domain-containing protein	Q8SDT1	Staphylococcus_phage	0.0e+00	99.8
AUU57145.1\|2598001_2598301_-	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AUU57146.1\|2598341_2598515_-	XkdX family protein	A0A0F6N3L7	Staphylococcus_phage	6.6e-27	100.0
AUU57147.1\|2598518_2598896_-	DUF2977 domain-containing protein	Q9FZY7	Staphylococcus_virus	3.4e-60	99.2
AUU57148.1\|2598895_2600719_-	DUF2479 domain-containing protein	W5R8J5	Staphylococcus_phage	7.4e-294	99.2
AUU57149.1\|2600718_2602629_-	hypothetical protein	A1KX41	Staphylococcus_virus	0.0e+00	99.8
AUU57150.1\|2602643_2604545_-	peptidase	Q4ZDD8	Staphylococcus_virus	0.0e+00	100.0
AUU57151.1\|2604553_2605501_-\|tail	phage tail family protein	S4V688	Staphylococcus_phage	3.6e-183	100.0
AUU57152.1\|2605513_2608978_-	hypothetical protein	S4V989	Staphylococcus_phage	5.8e-271	100.0
AUU57153.1\|2608994_2609339_-	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	2.5e-57	100.0
AUU57154.1\|2609368_2609734_-\|tail	phage tail protein	S4V9M6	Staphylococcus_phage	2.8e-59	100.0
AUU57155.1\|2609795_2610377_-\|tail	phage major tail protein, TP901-1 family	A0A0F6N3L8	Staphylococcus_phage	4.9e-106	100.0
AUU57156.1\|2610395_2610779_-	hypothetical protein	A0A0F6N3L1	Staphylococcus_phage	1.5e-68	100.0
AUU57157.1\|2610790_2611138_-	hypothetical protein	S4V987	Staphylococcus_phage	3.1e-60	100.0
AUU57158.1\|2611137_2611440_-	hypothetical protein	S4V7K8	Staphylococcus_phage	1.1e-50	100.0
AUU57159.1\|2611436_2611769_-\|head,tail	phage head-tail adapter protein	A0A0F6N3F4	Staphylococcus_phage	5.5e-54	100.0
AUU57160.1\|2611777_2612065_-	hypothetical protein	S4V6D9	Staphylococcus_phage	4.7e-46	100.0
AUU57161.1\|2613073_2613688_-	DUF4355 domain-containing protein	A0EWS9	Staphylococcus_virus	4.9e-40	100.0
AUU57162.1\|2613822_2613993_-	hypothetical protein	Q4ZDF2	Staphylococcus_virus	3.3e-23	100.0
AUU57163.1\|2614065_2615061_-\|head	phage head morphogenesis protein	E0Y3K7	Staphylococcus_virus	3.4e-184	100.0
AUU57164.1\|2615067_2616603_-\|portal	phage portal protein	Q4ZDV9	Staphylococcus_virus	9.3e-290	99.4
AUU57165.1\|2616613_2617891_-\|terminase	PBSX family phage terminase large subunit	A0EWS5	Staphylococcus_virus	5.1e-249	99.8
AUU57166.1\|2617877_2618318_-\|terminase	terminase small subunit	I1W650	Staphylococcus_phage	2.4e-73	99.3
AUU57167.1\|2618504_2618924_-	transcriptional regulator	I1W651	Staphylococcus_phage	8.1e-71	100.0
AUU57168.1\|2618938_2619085_-	hypothetical protein	Q4ZDN7	Staphylococcus_virus	1.3e-15	100.0
AUU57169.1\|2619085_2619259_-	transcriptional regulator	S4SVE4	Staphylococcus_phage	1.1e-21	98.2
AUU57170.1\|2619258_2619651_-	hypothetical protein	A0A2I6PDC1	Staphylococcus_phage	1.8e-64	99.2
AUU57171.1\|2619634_2619871_-	hypothetical protein	S4SWB7	Staphylococcus_phage	1.6e-36	100.0
AUU57172.1\|2619863_2620067_-	hypothetical protein	A0A0N9BAX5	Staphylococcus_phage	5.2e-31	100.0
AUU57173.1\|2620063_2620258_-	hypothetical protein	S4SX95	Staphylococcus_phage	7.9e-29	100.0
AUU57174.1\|2620254_2620461_-	DUF1381 domain-containing protein	A0A1W6JPM8	Staphylococcus_phage	4.9e-21	100.0
AUU57175.1\|2620497_2621034_-	dUTPase	A0A1P8L6E0	Staphylococcus_phage	2.1e-95	100.0
AUU57176.1\|2621026_2621275_-	DUF1024 domain-containing protein	A0A2H4PQK1	Staphylococcus_phage	1.7e-36	93.9
AUU57177.1\|2621289_2621538_-	hypothetical protein	S4V683	Staphylococcus_phage	8.8e-41	97.6
AUU57178.1\|2621538_2621910_-	hypothetical protein	A7TWN6	Staphylococcus_phage	4.0e-53	95.9
AUU57179.1\|2621910_2622096_-	DUF3113 domain-containing protein	W5R8N4	Staphylococcus_phage	1.4e-27	100.0
AUU57180.1\|2622100_2622505_-	DUF1064 domain-containing protein	A7TWN5	Staphylococcus_phage	7.1e-72	100.0
AUU57181.1\|2622514_2622736_-	hypothetical protein	A0A0H3U2V4	Staphylococcus_phage	2.2e-35	100.0
AUU57182.1\|2622748_2622907_-	hypothetical protein	A0A2I6PDX0	Staphylococcus_phage	1.1e-20	94.2
AUU57183.1\|2622903_2623689_-	DNA replication protein DnaC	A0A0H4J332	Staphylococcus_phage	1.9e-145	100.0
AUU57184.1\|2623701_2624433_-	helix-turn-helix domain-containing protein	A0A1J0MGB2	Staphylococcus_phage	9.8e-80	78.8
AUU57185.1\|2624497_2624779_+	hypothetical protein	A0A1W6JPU7	Staphylococcus_phage	2.6e-49	100.0
AUU57186.1\|2624918_2625593_-	hypothetical protein	R4IH15	Staphylococcus_phage	1.5e-127	97.8
AUU57187.1\|2625593_2626145_-	HNH endonuclease	A0A2H4PQR4	Staphylococcus_phage	5.1e-105	98.9
AUU57188.1\|2626155_2626581_-	Single-stranded DNA-binding protein 2	B7T0A5	Staphylococcus_virus	2.1e-58	88.7
2626805:2626821	attL	NA	NA	NA	NA
AUU57189.1\|2627197_2627419_-	DUF2483 domain-containing protein	A7TWM6	Staphylococcus_phage	3.2e-34	100.0
AUU57190.1\|2627428_2627689_-	DUF1108 domain-containing protein	C8CGY6	Staphylococcus_phage	8.9e-44	100.0
AUU57191.1\|2627693_2627996_-	hypothetical protein	A0A0F6N3N3	Staphylococcus_phage	1.4e-48	100.0
AUU57192.1\|2628088_2628250_-	DUF1270 domain-containing protein	A0A0E3XBK7	Staphylococcus_phage	4.3e-20	96.2
AUU57193.1\|2628242_2628464_-	hypothetical protein	E0Y3P2	Staphylococcus_virus	1.5e-31	100.0
AUU57194.1\|2628534_2629182_+	hypothetical protein	S4V9K2	Staphylococcus_phage	2.0e-113	100.0
AUU57195.1\|2629203_2629347_-	hypothetical protein	W5R8I6	Staphylococcus_phage	2.5e-16	100.0
AUU57196.1\|2629386_2629611_-	hypothetical protein	A0A0F6N4M2	Staphylococcus_phage	3.2e-34	100.0
AUU57197.1\|2629611_2630391_-	phage antirepressor	M1RZB2	Staphylococcus_phage	4.1e-132	92.6
AUU57198.1\|2630447_2630657_+	hypothetical protein	W5R9J5	Staphylococcus_phage	1.2e-30	100.0
AUU57199.1\|2630646_2630790_-	hypothetical protein	W5R8I6	Staphylococcus_phage	2.5e-16	100.0
AUU57200.1\|2630878_2631070_-	XRE family transcriptional regulator	A0A2I6PEL6	Staphylococcus_phage	2.3e-28	100.0
AUU57201.1\|2631230_2631560_+	XRE family transcriptional regulator	A0A2I6PEN2	Staphylococcus_phage	3.2e-54	100.0
AUU57202.1\|2631572_2632037_+	toxin	A0A2I6PEK4	Staphylococcus_phage	3.6e-80	94.1
AUU57203.1\|2632068_2633001_+	hypothetical protein	A0EWN8	Staphylococcus_virus	3.9e-174	100.0
AUU57204.1\|2632980_2633160_-	excisionase	A0EWN7	Staphylococcus_virus	8.3e-25	100.0
AUU57205.1\|2633271_2634321_+\|integrase	site-specific integrase	A1KWY3	Staphylococcus_virus	1.6e-203	100.0
AUU57206.1\|2634388_2635786_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
AUU57207.1\|2635936_2636401_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
2635805:2635821	attR	NA	NA	NA	NA
AUU57208.1\|2636390_2637632_-	cysteine desulfurase	Q2XUY6	environmental_halophage	8.2e-111	44.8

DBSCAN-SWA_11

2671970 : 2685598

Staphylococcus_phage(66.67%)

terminase,coat,protease,integrase

attL 2670814:2670828|attR 2683591:2683605

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2670814:2670828	attL	NA	NA	NA	NA
AUU57250.1\|2671970_2672939_-\|protease	CAAX protease	A0A0H4U080	Erysipelothrix_phage	5.9e-24	27.3
AUU57251.1\|2673215_2673785_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	9.3e-102	98.9
AUU57252.1\|2673781_2674123_-	pathogenicity island protein	A0A1W6JQM3	Staphylococcus_phage	1.4e-57	99.1
AUU57253.1\|2674125_2674653_-\|coat	spore coat protein	A0A1W6JQH7	Staphylococcus_phage	3.5e-87	97.1
AUU57254.1\|2674703_2674922_-	hypothetical protein	NA	NA	NA	NA
AUU57255.1\|2674939_2675518_-	pathogenicity island protein	A0A2H4JBG0	uncultured_Caudovirales_phage	4.8e-29	38.9
AUU57256.1\|2675529_2675871_-	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	1.4e-57	99.1
AUU57257.1\|2676320_2676962_-	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	7.2e-111	93.0
AUU57258.1\|2676958_2677339_-	hypothetical protein	Q4ZE71	Staphylococcus_phage	1.7e-67	96.8
AUU57259.1\|2677648_2679358_-	DUF927 domain-containing protein	Q4ZE73	Staphylococcus_phage	1.4e-302	92.8
AUU57260.1\|2679371_2680241_-	mobile element-associated protein	Q4ZE74	Staphylococcus_phage	1.5e-164	96.2
AUU57261.1\|2680305_2680632_-	DUF1474 domain-containing protein	Q4ZE75	Staphylococcus_phage	1.5e-48	89.8
AUU57262.1\|2680634_2680844_-	pathogenicity island protein	Q4ZE76	Staphylococcus_phage	2.9e-29	94.2
AUU57263.1\|2680836_2680983_-	pathogenicity island protein	NA	NA	NA	NA
AUU57264.1\|2680979_2681297_-	helix-turn-helix domain-containing protein	A0A1W6JQE0	Staphylococcus_phage	9.2e-51	98.1
AUU57265.1\|2681301_2681520_-	XRE family transcriptional regulator	A0A2H4JB11	uncultured_Caudovirales_phage	1.3e-19	66.7
AUU57266.1\|2681692_2682367_+	XRE family transcriptional regulator	A0A2H4JGT9	uncultured_Caudovirales_phage	1.6e-39	45.8
AUU57267.1\|2682380_2683553_+\|integrase	site-specific integrase	A0A1W6JQD3	Staphylococcus_phage	5.8e-215	96.2
AUU57268.1\|2683621_2685238_-	molecular chaperone GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
2683591:2683605	attR	NA	NA	NA	NA
AUU57269.1\|2685313_2685598_-	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage