CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP010051	Xylella fastidiosa strain Fb7, complete genome	2 crisprs	cas3,c2c9_V-U4,csa3,cas14i,Cas9_archaeal,DEDDh	0	4	9	0
CP014330	Xylella fastidiosa strain FB7 plasmid, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP010051_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP010051_1

1461197-1461345

Orphan

Consensus_repeat	Method
GTTGTCGAGGGTGGTGGTGTGCAGGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP010051_1

>merge|CP010051|1|1461197-1461345|CRISPRCasFinder
GTTGGTGAGGGTGGTGCCGTCAATCTGGAGGGTGCCGTTGCTGCTGATGTGGCCGGTAGCGGTGTTGTCGAGGGTGGTGGTGTGCAGGTGGGTGGCGGTCTGGGAGTCGATGGTGCCGCCGCGGTTGTCCAGGGTGGTGGTGTGCAGGT

>CP010051|1|1|1461197-1461345|CRISPRCasFinder
GTTGGTGAGGGTGGTGCCGTCAATCT	GGAGGGTGCCGTTGCTGCTGATGTGGCCGGTAGCGGT
GTTGTCGAGGGTGGTGGTGTGCAGGT	GGGTGGCGGTCTGGGAGTCGATGGTGCCGCCGCG
GTTGTCCAGGGTGGTGGTGTGCAGGT

Protein	Signature genes	Signature genes Name	Protein_function
CP010051.2\|ALR10020.2\|1462750_1463140_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR08948.2\|1464880_1466092_-\|integrase	unknown	unknown	gnl\|CDD\|271182
CP010051.2\|ALR08947.2\|1463542_1464064_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR08936.2\|1453859_1455104_-\|hemagglutinin	unknown	unknown	gnl\|CDD\|283284
CP010051.2\|ALR08943.2\|1459600_1459873_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR08942.2\|1458916_1459588_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR08939.2\|1457035_1457572_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR08950.2\|1468006_1468405_-\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR08949.2\|1466505_1468056_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227697
CP010051.2\|AWG45291.1\|1466233_1466509_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226097
CP010051.2\|ALR08941.2\|1458494_1458866_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|AWG45290.1\|1458100_1458466_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR08937.2\|1455685_1456162_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|AWG45289.1\|1456639_1457026_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR08946.2\|1463185_1463497_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR10021.2\|1464535_1464778_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
CP010051.2\|ALR08953.2\|1469161_1469491_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374352
CP010051.2\|ALR08938.2\|1456177_1456615_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR08952.2\|1468710_1469172_-\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR08940.2\|1457581_1458082_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP010051.2\|ALR08948.2\|1464880_1466092_-\|integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	7.48055e-61
CP010051.2\|AWG45291.1\|1466233_1466509_-\|hypothetical-protein	gnl\|CDD\|226097	COG3567, COG3567, Uncharacterized protein conserved in bacteria [Function unknown].	1.80523e-31
CP010051.2\|ALR10021.2\|1464535_1464778_-\|transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	4.71387e-13
CP010051.2\|ALR08936.2\|1453859_1455104_-\|hemagglutinin	gnl\|CDD\|283284	pfam05590, DUF769, Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.	1.04413e-27
CP010051.2\|ALR08953.2\|1469161_1469491_-\|hypothetical-protein	gnl\|CDD\|374352	pfam16083, Phage_holin_3_3, LydA holin phage, holin superfamily III. Phage_holin_3_3 is a family of small hydrophobic holin proteins with one or more transmembrane domains. Holins are encoded within the genomes of Gram-positive and Gram-negative bacteria as well as those of the bacteriophages of these organisms. Their primary function appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis. When chromosomally encoded, these enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some may catalyze export of nucleases. LydA and lydB are encoded on the dar operon. The phenotype of a rapid lysis in the absence of active LydB suggests that this protein might be an antagonist of the holin LydA.	9.37018e-16
CP010051.2\|ALR08949.2\|1466505_1468056_-\|hypothetical-protein	gnl\|CDD\|227697	COG5410, COG5410, Uncharacterized protein conserved in bacteria [Function unknown].	6.95182e-171

>CP010051.2|ALR08943.2|1459600_1459873_+|hypothetical-protein
MVFAPVGLFHAGFGHDVGGVGDVDVVADVVEGGGGDVQGAGDVDGGAAVVEEGGGAGGVEGVVQGGADGGISITENHGVGGVTQGVSTNV
>CP010051.2|ALR08942.2|1458916_1459588_+|hypothetical-protein
MVAAGEEVGVVVTQGVGLNQHGAARLDEGWSAGIKVEDFFLGGSGGIAVFLVVADIVGAAVHVNEGVVWVGVVVPGDEADAVVGAGAVVGVVGEAVIARGVGDGDGLEAFVLLGGVQADEGAVVGRGGGNVVGVGLFVLTVGVVEDDAVAGAGGEVHAAAFGLAGIEAATGIEVGAGLGGEADDGAVDLLAIGGDVGVVFDDVGGVEVIDVVGVVVAGESEVA
>CP010051.2|ALR08941.2|1458494_1458866_+|hypothetical-protein
MVGAAVVVGKGEGVEAGGGVGDGDDAVDDTQGLGAGGVGDMLDRLGGVGGVGDVVECLGGNVLVAAAGDAAANLFGGGGAGFIGPCVGVTTVGGAGVLECVGAGELEGAVVDQQGSVVLLFVT
>CP010051.2|AWG45290.1|1458100_1458466_+|hypothetical-protein
MVLFGDGDAGIQEGAVLLVVVGVAVEAAAAGELGDLFADEALFVVAVAEAFVEGVVVAQGVELGGGAGEVAAEGKAGVGGDEGGGVGVKGEEAVVGQGEGAGGGDGDGGGAAGSRMGALGW
>CP010051.2|ALR08940.2|1457581_1458082_+|hypothetical-protein
MGGAQAEIGAGAGDFKAGLLVQFRHAVVAAALGGGGEQGAASKEVALGMDFEDVAGFELSAEGGEVAGGVDVDGVGGEAAALLVHGVGVDVDEVAGVNGAGVGEGVGVDGGAGGSQEGAVWGEVAGAGAQVEAGDEGAGGGAVGQLDVLLDEPDDVAGELGELVGT
>CP010051.2|ALR08939.2|1457035_1457572_+|hypothetical-protein
MGGVGGGLEGEVVFGLHVGAGIGDDVAAGDGDVVAFDEDFIGAEGAANGLGLLLVGVGGGGAAVEEAAAFGVAVLAGVLDGVAVRNGDVAGGQGGDGALGAVEGGGTQGDVLAAVELDVAGGADAGAVFGVDAAVAAVAGVPLGGVGAVGGEGAQVQGAGGVEAGVAVRAGVVEGDAL
>CP010051.2|AWG45289.1|1456639_1457026_+|hypothetical-protein
MKAGVVAASGGVLHLLGGLGTGNQGGAESHGEAALAGGGVLGGLAGVVRLDDVDFFGVDVDVAVRGQDVAADLLVVAARQEGDVAVGGANQGAGGGGGCGGAVGALALVAQGEGGAAVADEAALFGVV
>CP010051.2|ALR08938.2|1456177_1456615_+|hypothetical-protein
MAVAPGEVGRLAAACGGAGVGGEAGTGAAAAQVHGHADTCAAASVVALVGDGVLGGQQGDVAIGFEVSHGVAADVAALDSDRGGGAVAGGADVDVTAGGDVGTGSGAGGGGGGAVVCATADGEGGVEAAQGAGVLADGVNGVFGA
>CP010051.2|ALR08937.2|1455685_1456162_+|hypothetical-protein
MALLVGADGAAVAAVAAAQVDLGGGVGGVVFDVLPDQGAGVQGVQAVVDGGAVGGDGAANEVGLAADGELVAAIASKEAALFGDAGVVAADGLVVEVGAAAEACASGEAAAEAAVCAAVLVGVLEAFDAEVTGNVGNDVFGGANGAFHEEVAARVNGQ
>CP010051.2|ALR08936.2|1453859_1455104_-|hemagglutinin
MIVNYVQQQGATAIGHWVVTGQLTEGSPLHAALHALLACAGAAASQQHCSSGAQGAAASSVLTGLFSDPRPEDTAQDREAKRNLITSIVTGIASIGNTDAATATHAAIAAVDNNWLATQQVIQMKKDISDAKNNLEMLKVIGKWGGIYIKQEGLTTVGLMNGLGEAGINDIKGMLEFLSDPIAGLKGLKELIVNPEVRQQLGDSIFQELDNKIDRMQTALMVGGDEHAVQYGRDLGALVWDIGSVAIGVGGVAKAGGALAKAGINVSEDVLERMAARNLEKLVVQQQGAFNKALALVDKSNSSSEFVFSGLKAKVTPRDSVGGSNKAGNVKVLESEAFSDQKIREFAQQLAGDVPLKETSRKGVYRADLSDGTIVHLRSVSSSYEDTKARWTLVIENNPSLKEIVNRKVEIKFR
>CP010051.2|ALR10020.2|1462750_1463140_+|hypothetical-protein
MGGDGHRAGAGRCVGSGRDAGNGGRVRWGGLAGCRGLQSAEAALGLVVQVLGLEGQGLEAGLLDVAATVIQAGAGDVQAGGGEGAAAVVNGGGGVQAQGLGDADKAAVVHCCGGGELGVGGGLEAAGVL
>CP010051.2|ALR08946.2|1463185_1463497_+|hypothetical-protein
MAGVADAQAVFGANQGDFAGIHAAQGGDVQGHGGAVAWGCRQGGGGVSVQGDGGRAGGGLKFLGPEAGVELDGAGNQGGVVGAAAVQAQAVELNGAAVDAVVV
>CP010051.2|ALR08947.2|1463542_1464064_+|hypothetical-protein
MAGIDDAAAVAGDAGGVGNDELGAVASHFQIAMQLAGCPAVDFVEDDFGGAGGQPGVALDGARQVGLGRGAGVVEDGALWGDVKLLVGVAGDARLAGGLDVDEGGAVGGGKDGRALLAWGVGVGDDLGGGNARNAHPAEAEPQGKGDGMEAGTRWPLCCKGRTWGTAGGGGSF
>CP010051.2|ALR10021.2|1464535_1464778_-|transcriptional-regulator
MPHTLLRLPAVKMETGYSRSTIYLRILQGLFTKPVSLGARAVGWPSADVAALNAARIAGQSNAEIRALVETLHRARKNAA
>CP010051.2|ALR08948.2|1464880_1466092_-|integrase
MPLTDTALKALKPRDRIYSVADERGLSVEVYPTGGIVWRFRYRLAGRYEKLTLGKYPALSLRNARLKRDEAASLVAMGTSPARQKQLAKVTAAHATTVRDFAERFFREIQSRDRKDSTMPRRYLDKDILPFVGDKPMREVTAEEIRSLIWRKKEQGFDATAGQIRGVLKRLCDYAVTCGLMPTNPVLALPMRHVYKAVSRDRALSPDEIRLFLRAVWASRIRRQFKLALHLILLTMVRKSELLLARWDHVHLDQAQWHIPAEHSKTGKPHIVYLSRQAVVLFEALRVLAGGSALVMPGSGTLTRPFAHNALNHALGKAMQWQGIRPFTIHDLRRTASTWLHEHGWASDVVEKALNHSIGGVRGVYNRAEYADQRRQMLQCWADFIEKQLKTDHLIPDCFGKVA
>CP010051.2|AWG45291.1|1466233_1466509_-|hypothetical-protein
MSGRNRNTRATRSRPGASPQHVVDNLQNLVAGLGDQRDKMSYGRYLLPRVIDRVELEAMYRTNWLARKIVDIPATKITLVFLTSQDIQSPS
>CP010051.2|ALR08949.2|1466505_1468056_-|hypothetical-protein
MKSKSPPSCSALNRSTEQAQEQAVIKARCEADHLFFTRYFFKQRQQLRFRVNWHHQVIAGVVDDVIAGRRKDVVINVPPGSSKTELVAINVMARGLALNPYARFLHISYSDDLALLNSETAREIVQSDEYRALWPLEIADDAKSKKRWNVVVDGKKAGGVYAVSLGGQVTGFRAGHMAPGWQGAIIIDDPLKVEDAYSKTGRSKANRKLVSTVKSRKASPDTPIIVIMQRLAQDDPTGFIQSGGFPGAWECIEIPALIDDAYVSRLPEHVQGQVVRDVQDQDGRYSYWPYKEPLAELLALEATDRYVFSGQYQQRPSPLGGGIIKGDQFGRYTVLPRLLSRTVYGDTAQKTAERNDYSVFQLWGLGEDKRIYLLDMIRGKWEAPELKRRAIDFWNAHRAYDHKVSAPIRQMKIEDKSSGTGLIQDIARGGSGQGRIPVTGIARVTDKLTRVMDVVSYIEAGWVVIPAQAGWVKDFVAECEAFTADGTHAHDDQIDPMVDAINDLLANPASDWSRWV
>CP010051.2|ALR08950.2|1468006_1468405_-|hypothetical-protein
MAETGRKSHVPTDKNRLLAKQLTSFGIPHAEIALLMQISAPTLRKHYRVELDTGHIQANAKVAKSLFRLATHSTNPNITAIIFWLRTRAGWKDTQRVEVSGRDGEAIEQKVGLALVDEKQIAAIVQRLESEY
>CP010051.2|ALR08952.2|1468710_1469172_-|hypothetical-protein
MIVNTLRRVGRRLPSVRLLIEYMMIGALVALVAHAVLAWSERSQLAQRAAQLEGQLAAVESTLDAQVAMNRDQDAAIARLRALREIDRQAIAGLHTDLNRITVRDRVLRQRITHLEHFHDEAKAFLDRDVPDVLGCLLDRDGCQAGHGEADPR
>CP010051.2|ALR08953.2|1469161_1469491_-|hypothetical-protein
MVDPSLLPAWWKEAFYVGLAMATGTLSYVMRALDAKQRLAVSRVLIEAGIAGFVGLFVMCVCEWLEMSQAFTVAAVIASGLIDTPQTLELIQNFIVPKLGTGRRNTDDR

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Crispr_ID: CP010051_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP010051_2

2191669-2191817

Orphan

Consensus_repeat	Method
GTTGTCGAGGGTGGTGGTGTGCAGGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP010051_2

>merge|CP010051|2|2191669-2191817|CRISPRCasFinder
GTTGGTGAGGGTGGTGCCGTCAATCTGGAGGGTGCCGTTGCTGCTGATGTGGCCGGTAGCGGTGTTGTCGAGGGTGGTGGTGTGCAGGTGGGTGGCGGTCTGGGAGTCGATGGTGCCGCCGCGGTTGTCCAGGGTGGTGGTGTGCAGGT

>CP010051|2|2|2191669-2191817|CRISPRCasFinder
GTTGGTGAGGGTGGTGCCGTCAATCT	GGAGGGTGCCGTTGCTGCTGATGTGGCCGGTAGCGGT
GTTGTCGAGGGTGGTGGTGTGCAGGT	GGGTGGCGGTCTGGGAGTCGATGGTGCCGCCGCG
GTTGTCCAGGGTGGTGGTGTGCAGGT

Protein	Signature genes	Signature genes Name	Protein_function
CP010051.2\|ALR09489.2\|2192019_2194602_-\|mannosyltransferase	unknown	unknown	gnl\|CDD\|340838
CP010051.2\|ALR09494.2\|2201588_2202197_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224788
CP010051.2\|ALR09498.2\|2206186_2207194_+\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236863
CP010051.2\|ALR09492.2\|2196276_2198655_+\|penicillin-binding-protein-1B	unknown	unknown	gnl\|CDD\|273952
CP010051.2\|ALR09497.2\|2204131_2204851_-\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|213023
CP010051.2\|ALR09490.2\|2194598_2194829_-\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR09487.2\|2190072_2190345_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|AWG45361.1\|2181765_2182593_-\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR09486.2\|2189388_2190060_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR09496.2\|2203022_2204135_-\|glycosyl-transferase-family-1	unknown	unknown	gnl\|CDD\|340831
CP010051.2\|AWG45362.1\|2183660_2184506_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283284
CP010051.2\|ALR09493.2\|2198651_2199209_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
CP010051.2\|ALR09495.2\|2202225_2202888_-\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|238448
CP010051.2\|ALR09484.2\|2188571_2188958_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR09483.2\|2188052_2188553_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR09491.2\|2194850_2196182_-\|sugar-transferase	unknown	unknown	gnl\|CDD\|274425
CP010051.2\|ALR09485.2\|2188966_2189338_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR09482.2\|2187407_2188043_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|AWG45360.1\|2181165_2181519_+\|hypothetical-protein	unknown	unknown	unknown
CP010051.2\|ALR09480.2\|2184518_2185367_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP010051.2\|ALR09489.2\|2192019_2194602_-\|mannosyltransferase	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	3.7241e-77
CP010051.2\|ALR09493.2\|2198651_2199209_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	4.42853e-05
CP010051.2\|ALR09495.2\|2202225_2202888_-\|carbonic-anhydrase	gnl\|CDD\|238448	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	7.49803e-109
CP010051.2\|ALR09497.2\|2204131_2204851_-\|polysaccharide-deacetylase	gnl\|CDD\|213023	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, hemin storage system HmsF protein in gram-negative species, intercellular adhesion proteins IcaB, and many uncharacterized prokaryotic polysaccharide deacetylases. It also includes a putative polysaccharide deacetylase YxkH encoded by the Bacillus subtilis yxkH gene, which is one of six polysaccharide deacetylase gene homologs present in the Bacillus subtilis genome. Sequence comparison shows all family members contain a conserved domain similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, which consists of a deformed (beta/alpha)8 barrel fold with 6 or 7 strands. However, in this family, most proteins have 5 strands and some have 6 strands. Moreover, long insertions are found in many family members, whose function remains unknown.	2.28239e-61
CP010051.2\|ALR09492.2\|2196276_2198655_+\|penicillin-binding-protein-1B	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
CP010051.2\|ALR09494.2\|2201588_2202197_-\|hypothetical-protein	gnl\|CDD\|224788	COG1876, VanY, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	6.91963e-60
CP010051.2\|ALR09491.2\|2194850_2196182_-\|sugar-transferase	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	1.39195e-25
CP010051.2\|ALR09498.2\|2206186_2207194_+\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	0
CP010051.2\|ALR09496.2\|2203022_2204135_-\|glycosyl-transferase-family-1	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.52041e-44
CP010051.2\|AWG45362.1\|2183660_2184506_-\|hypothetical-protein	gnl\|CDD\|283284	pfam05590, DUF769, Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.	1.17358e-158

>CP010051.2|ALR09487.2|2190072_2190345_+|hypothetical-protein
MVFAPVGLFHAGFGHDVGGVGDVDVVADVVEGGGGDVQGAGDVDGGAAVVEEGGGAGGVEGVVQGGADGGISITENHGVGGVTQGVSTNV
>CP010051.2|ALR09486.2|2189388_2190060_+|hypothetical-protein
MVAAGEEVGVVVTQGVGLNQHGAARLDEGWSAGIKVEDFFLGGSGGIAVFLVVADIVGAAVHVNEGVVWVGVVVPGDEADAVVGAGAVVGVVGEAVIARGVGDGDGLEAFVLLGGVQADEGAVVGRGGGNVVGVGLFVLTVGVVEDDAVAGAGGEVHAAAFGLAGIEAATGIEVGAGLGGEADDGAVDLLAIGGDVGVVFDDVGGVEVIDVVGVVVAGESEVA
>CP010051.2|ALR09485.2|2188966_2189338_+|hypothetical-protein
MVGAAVVVGKGEGVEAGGGVGDGDDAVDDTQGLGAGGVGDMLDRLGGVGGVGDVVECLGGNVLVAAAGDAAANLFGGGGAGFIGPCVGVTTVGGAGVLECVGAGELEGAVVDQQGSVVLLFVT
>CP010051.2|ALR09484.2|2188571_2188958_+|hypothetical-protein
MVLFGDGDAGIQEGAVLLVVVGVAVEAAAAGELGDLFADEALFVVAVAEAFVEGVVVAQGVELGGGAGEVAAEGKAGVGGDEGGGVGVKGEEAVVGQGEGPVGVTVTAGGAAGSRMGALGVVMLRSGM
>CP010051.2|ALR09483.2|2188052_2188553_+|hypothetical-protein
MGGAQAEIGAGAGDFKAGLLVQFRHAVVAAALGGGGEQGAASKEVALGMDFEDVAGFELSAEGGEVAGGVDVDGVGGEAAALLVHGVGVDVDEVAGVNGAGVGEGVGVDGGAGGSQEGAVWGEVAGAGAQVEAGDEGAGGGAVGQLDVLLDEPDDVAGELGELVGT
>CP010051.2|ALR09482.2|2187407_2188043_+|hypothetical-protein
MALFTGAAGADADAEAGAGEAAVALLEGVLGAVGGFGILQAHALGAEDVDVLISNELGADAVDGVGGGDGDVLAAQDAGEGDGIGTAGGAVAAAGTEQAAAAAGALLLVTEARFSGQQGHAAVSGGQRQVTGAAVQGHGTAGDTGIGADADVAVGGDAGAVFAVDAAVAAVAGVPLGGVGAVGGEGAQVQGAGGVEAGVAVRAGVVEGDAL
>CP010051.2|ALR09480.2|2184518_2185367_-|hypothetical-protein
MTLVNPDRENIASTGETYRNTTYLPYTKPTHQLGELVTAGLEKLLEITKIASPASRLQAAAAKEVMYNAEDKKYTNPIYLEGHSRGTMTLSNALRVLAADHVFGKNLEILAYNPAAEGNRLAEAAALVTKKPVKTWKPHDDFVANKIGGYDGDATFNDLWKIFQTNYSVHSSGGTAALGSDWNHVDKEKLFSYKDLDINDMNAKCQGRTIGLLEQWQKTRRPEDPVATQLTQLQRLLWQSQQWQQQLDTAPGLLTRPTPTSPDAPSARQQQLQQLRQSLTPH
>CP010051.2|AWG45362.1|2183660_2184506_-|hypothetical-protein
MQRRPLLGVSLLAASLLLAGCSSGPPIDYRTGKPMMAGPWENRDLSLEYFQLDFLGQYTVKHAFINGINIDRCYPGSPPDHVQVVMVTSPSGSKTPGIVADGRVNQPPEAWPMRAYFIGSQYSNTSNKYQPDGSVLRNPDGTPQQQVVKGWTFNALCSAEFAGGNYIGFGIRSAASQSIEEKIQAVTDLINESGIRSKRAFLDPPRTETRWGNPWTWYRALIPTPVGDGVEIWMTPIGNSGYYITVTFNFIEAARQHNTEDYQRARQLMDGILQSVVIQKQ
>CP010051.2|AWG45361.1|2181765_2182593_-|hypothetical-protein
MTGWAIPWRRLITQVMNRLYIQDSGETYRNTTYLAYTKPTHQLGELVTAGIEKLLEITKIASPASRLQAAAAKEVMYNAEQGNYSNPVYLEGHSRGTMTLSNALRLLAADHLLSDDLKILAFNPAAEGNRLTEATLRVTGEKPYIWAPPKDFVANKIGGYAGNATFNDLWKIFQTNYSVHSSGGTAAQFSSHTLNLTAAGNLDAHSAQSTQEQTSSQRHRSASLGTKIGVTGGGPSVSADVASGRGSAGRDSAEGQCYLRGAEVGNQTLHGCRLS
>CP010051.2|AWG45360.1|2181165_2181519_+|hypothetical-protein
MKNTYVIALLAVTTATLLSGCATKRYGRLQPLTSYESRNYNCTQIDLELAKIDAFEQQVTEQAKFSGMSVASFLGDFGIGNTLERNQAIKTAKERRTQLITARSTKGCDNHPQPKQP
>CP010051.2|ALR09489.2|2192019_2194602_-|mannosyltransferase
MKLVIDLLGAQTRSHLRGIGRYTRELTKALLRQAGEAHAIHLVLHAPLEQASDALIAEFGALLPRARIHLLRLPRHTSEHLTGNTWRHHAASRLSRYGLTCLDADVVWHSSVFEGYDEDGVLPDAPLFHTNRVATLYDLIPLHDPEVFLPGSLPKAWYERRSAFLSSCDLLFCLSEWTAQEAVQRLHLDPERLVVIGGGVDSNFRPLVFDAQQRGNLLARFSITRPYVLYNGGLDQRKNVPALLRAFALLPMAIRQRHQLVVLGDDREVHRPMMALCRQLGLDQQEVVFTGRVNDSDLVALYGLCALFVFPSRLEGFGLPVLEAMACGAPTLCSDAASLPEVAGRQDILFPPEDHVALSARMSQVLDDPQWLQSLRDYGLRRATAFTWDRVAQRALDALTRLQVRSSEMKSQRVSEVSPATHTETAAPEMLPITEIQLVTDLAALPGDASRDDLAQAAFSICSMRVAPQAPQWLVDVSQIAKTDIGTGTSRVTRSILREWLSTPPPGVCIVPVYLREGQYHYARSFTAQVLGLVSETPQEGIVMVYPGDVFVGLDWAPEAINAARARLQDWRRVGVATCFVVHDLLPMTLPDCFHPYSRNLFEQWLRTVAHLADAIACISATTAEVLSRWLQDTTVDYQFGIPPQVKHFPLGVSFPEVSTAQEAIREELRTALVMRPTLLIVGTLEPRKGHVHALRICEQLWEQGEDVNLVVVGQRGWSEQALVMRLTRHPEVGRRLFWLSDAADAELSALYVHATALLALSEGEGYGLPLLEAAHFRLPILARPLPVFLEIMADYPHYLDGTAPDTWSATVAQWLHASDRPISRPVPIASWKESAQQLADIVNDCRFLLDSKKLSAPLK
>CP010051.2|ALR09490.2|2194598_2194829_-|hypothetical-protein
MSLSRITALIARHDRLKRLMVRLLSCVPAVDVWLRHHVSARKYRRSLLDVGEADLPEVAVSVYQQLLIATGKDGRL
>CP010051.2|ALR09491.2|2194850_2196182_-|sugar-transferase
MSVDSVSRKHDRIPFIRFLGVYLLFQWRRQCARLHRARIALYSRRFGQWIRLRAAVSADQSAPPSVAAVVSASATQTPTNTRCILLIDTVPPRPDRDSGSLRCHHLMHLMVCMGYKVVLHCQERMPSAAEVMALRAIGVTTTAVAGGFPSWLLTNPERYCAVVVCRYHLGLSWLPLLRAFVPDSLCILDTVDLHHLREQREAELRNLSGLRAAAAITRRHELHAISCADLVWVVSPVERDYLARLLPQARVEVVPNMHDMVETIPPFVSRHGFLFVGGSRHPPNVDAVRWLLSEIFPRIRERLPDAQLHLVGAGLAEAMQSQQMICPGVSFHGHVPEMAPLLHACRVSLAPLRFGAGVKGKISEALAYGLPVVTTPEGAEGMYLRSGMDALISGDAEDLARQAVCAHEDLEVWQRLSDNGQQIIKQHFSLHSTRAALAVMLPH
>CP010051.2|ALR09492.2|2196276_2198655_+|penicillin-binding-protein-1B
MSGHSPWWGWLIACGLAGLALAMGFLIPYTLYLNQQVTARFGELRWQIPTRVYARPLMLQPGMALDARTLKIELDAASYREDNHGELPGTYQQQNGRFTVSSRGYVDVDGAIPASRLIITLNNNQVSALRNADTRKPIRRGRLDPARIATLYGQKQEERRLVRLEEVPQLLVTGLQVVEDRDFKHHHGIDITSILRAAWVMVRSGGGVRQGASTLTQQLARSGLLGIGKEQTLQRKCNEILYALILEARYSKRVILESYLNQVYLGQRGSQAVHGVATGAEFWYGRELGSLTTEQVALLIGLVKGPSYYDPRRFPDRALSRRNFVLGKLHENKLIDDAEYMRAQASSLGVPKEPGLVAANRFVAYLDLVRRQLAHDYPENVLRGAGMTVLTGMSPSAQSYAERGVQTTLSALEKVKGQKRPPLQAGLVLTDVHNGDVLAVVGSRDATQSGFNRAIEAQRQVGSLLKPFVYLLALASPDRWSLSSWVEDTPVSIPLAHGRIWSPSNSDNISHGTVRLIDALAHSYNQATVRVGMQVGPERVAQLINVLAGLKADANPSLILGATDQSPYAMTQLYQFLASGGEIQPLHAVRGVLDPQNKLLKRYDNTPAPAQPGDSVAANVISVALQEVVNSGTARQLIIDGLGRLSPAGKTGTSNDGRDSWYAGYTGNHLAVIWVGNDQNEQTGLYGATGAMRVWSSIFSQLPSTRLQVNGKGLDWQSVEPMGTGTTDANCPGARRFPFVAGFAPPYAACSGAGGAPEAGHNIGWRNWFGLDKQKGDQASPPTTPPPDQSTQ
>CP010051.2|ALR09493.2|2198651_2199209_+|hypothetical-protein
MKRLPVPFRTFTVTVMMPVALTACISPPQPATPAPPPATPPPVDTLSPAQRLAAVTNIASADDTELLVQPLHDLQIDDLRQAAKAKRQAGNLAAAAAALDHALELVTNDPAVLQERAEIALLQSDWTGAEHYAKRAVELGSRTGPLCRRHWATIEQARLARGEKENASSAHTQIGRCTVPGIKRY
>CP010051.2|ALR09494.2|2201588_2202197_-|hypothetical-protein
MNVYSSNEDTPNAPDMLSWRVHTQKNDPLPLPELKARLLALGIDADRYARTTGLSIELEPTTLADAGYDRYQRPLLLTVDAARAWHAMRQAAVRDGIVLDAISGYRSYAYQFGIFENKLAQGKTLQEILTVNAAPGFSEHHSGEALDIGMPGEPPVEENFEGSSAFAWLQGHAGRFGFHLSYPRNNPHGIVYEPWHWRWRAR
>CP010051.2|ALR09495.2|2202225_2202888_-|carbonic-anhydrase
MHSLEHLLQNNRNWCERINQEDPEFFARLSKQQSPEYLWIGCSDSRVPANQIIDMAPGEVFVHRNVANVVVHTDLNCLSVIQFAIDVLKVKHILVVGHYGCGGVLASLTRARLGLVDNWIRHVTDVAEKHNSYLETIVALPDQHARLCELNVLEQVLNVCRTSIVRDAWSRTQPLTVHGWVYSLSNGLVHDLGIDVDRFEMLPSCYADALARIQADQVVH
>CP010051.2|ALR09496.2|2203022_2204135_-|glycosyl-transferase-family-1
MKVLFVGTSRGGGGAESHFVGLVRAMAETNHQSTVLVHPDGLIARQLQQTAIRLFTATFRNVMDLRGYLAIARALRLVHPDVLVGDFGKEYWPLLLMGRLYRLPVVLFRHRLPPMNCFSTYWVPRLADRFFAVSAYARRHYLAEGMPPERVQVLYNPVDTDALRPDPRVRRAMLHELGWDEDVLVVGCFGRIHEGKGVFVLAEAMEQAMQEEPRLCCLWMGTGLHVQRLAATVAGSRFASRQRVLGWVTDPARYFQALAMLAMPSLLPETFGRVSAEAQASGVPVLVSDVGGAAETLQDGTTGMLLPAGDVPAWRNAILAFCDPQPRAAMAAAAPSFVEARFSQQVIAAEFISELERVISDRHHMIAPMR
>CP010051.2|ALR09497.2|2204131_2204851_-|polysaccharide-deacetylase
MAIPILMYHNIAKVPKQVRHLRGLYVTPTAFARQMWLLHRLGYCCLSMSAAMPYLRGERSGKVMVVTLDDGYLDNLQAALPVLQAHGFSATCYVVSGSLARFNTWDAERLNVCKPLMSPAQVRQWHDAGMEVGAHTRSHPHLSGCTAAQLHEEIAGCRDDLEQCIGAPVTQFCYPYGDVTPPVIDAVCDAGYAAATTTRRGRVFPGQHLWTLPRVPVSYRHILPQFALRTLTGYEDRRI
>CP010051.2|ALR09498.2|2206186_2207194_+|methionine-ABC-transporter-ATP-binding-protein
MIQFKDSYKHYGANGREVTALQPLNLEIHAGEVFGIIGHSGAGKSTMLRMINRLEEPSGGHLLINGQDITVLDRMGLRALRRQIGMIFQHFNLLSSYTVAGNVAFPLKLTGASDAKINARVAELLAWVGLEAHANTYPAQLSGGQKQRVGIARALATRPQILLCDEVTSALDPQTTTTVLQLLARINRELGLTIVLITHEMDVIRRICDRVAVLDTGRLVETGLVTDVFLHPQHPTTRSFVMETEHIDTSALDQDFSLVNGRIVRLTFIGTDTYLPLLGRVARETGVDYNILSGRIDRIKETPYGQLTVALSGGDPVAAQAAFAAAGIHIEELRA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP010051_1	1.1\|1461223\|37\|CP010051\|CRISPRCasFinder	1461223-1461259	37	NZ_CP035092	Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence	602553-602589	8	0.784
CP010051_1	1.1\|1461223\|37\|CP010051\|CRISPRCasFinder	1461223-1461259	37	NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	196086-196122	8	0.784
CP010051_2	2.1\|2191695\|37\|CP010051\|CRISPRCasFinder	2191695-2191731	37	NZ_CP035092	Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence	602553-602589	8	0.784
CP010051_2	2.1\|2191695\|37\|CP010051\|CRISPRCasFinder	2191695-2191731	37	NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	196086-196122	8	0.784
CP010051_1	1.2\|1461286\|34\|CP010051\|CRISPRCasFinder	1461286-1461319	34	NZ_CP020810	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence	61106-61139	10	0.706
CP010051_1	1.2\|1461286\|34\|CP010051\|CRISPRCasFinder	1461286-1461319	34	MN692199	Pectobacterium phage MA12, complete genome	54468-54501	10	0.706
CP010051_1	1.2\|1461286\|34\|CP010051\|CRISPRCasFinder	1461286-1461319	34	MN518139	Pectobacterium phage MA11, partial genome	29039-29072	10	0.706
CP010051_2	2.2\|2191758\|34\|CP010051\|CRISPRCasFinder	2191758-2191791	34	NZ_CP020810	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence	61106-61139	10	0.706
CP010051_2	2.2\|2191758\|34\|CP010051\|CRISPRCasFinder	2191758-2191791	34	MN692199	Pectobacterium phage MA12, complete genome	54468-54501	10	0.706
CP010051_2	2.2\|2191758\|34\|CP010051\|CRISPRCasFinder	2191758-2191791	34	MN518139	Pectobacterium phage MA11, partial genome	29039-29072	10	0.706
CP010051_1	1.2\|1461286\|34\|CP010051\|CRISPRCasFinder	1461286-1461319	34	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	340551-340584	11	0.676
CP010051_2	2.2\|2191758\|34\|CP010051\|CRISPRCasFinder	2191758-2191791	34	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	340551-340584	11	0.676

1. spacer 1.1|1461223|37|CP010051|CRISPRCasFinder matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.784

ggagggtgccgttgctgctgatgtggccggtagcggt	CRISPR spacer
tggcggcgccgctgctgctgatgtggccggttgggat	Protospacer
 *. **.****.******************* * *.*

2. spacer 1.1|1461223|37|CP010051|CRISPRCasFinder matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.784

ggagggtgccgttgctgctgatgtggccggtagcggt	CRISPR spacer
tggcggcgccgctgctgctgatgtggccggttgggat	Protospacer
 *. **.****.******************* * *.*

3. spacer 2.1|2191695|37|CP010051|CRISPRCasFinder matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.784

ggagggtgccgttgctgctgatgtggccggtagcggt	CRISPR spacer
tggcggcgccgctgctgctgatgtggccggttgggat	Protospacer
 *. **.****.******************* * *.*

4. spacer 2.1|2191695|37|CP010051|CRISPRCasFinder matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.784

ggagggtgccgttgctgctgatgtggccggtagcggt	CRISPR spacer
tggcggcgccgctgctgctgatgtggccggttgggat	Protospacer
 *. **.****.******************* * *.*

5. spacer 1.2|1461286|34|CP010051|CRISPRCasFinder matches to NZ_CP020810 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
acaccgtggtctgggagtcgacgttgccgccggc	Protospacer
. .. *.**************.* ********

6. spacer 1.2|1461286|34|CP010051|CRISPRCasFinder matches to MN692199 (Pectobacterium phage MA12, complete genome) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tggcggcggtcagggagtcgatggtcttgactaa	Protospacer
 **.******* ************* ..* *  .

7. spacer 1.2|1461286|34|CP010051|CRISPRCasFinder matches to MN518139 (Pectobacterium phage MA11, partial genome) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tggcggcggtcagggagtcgatggtcttgactaa	Protospacer
 **.******* ************* ..* *  .

8. spacer 2.2|2191758|34|CP010051|CRISPRCasFinder matches to NZ_CP020810 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
acaccgtggtctgggagtcgacgttgccgccggc	Protospacer
. .. *.**************.* ********

9. spacer 2.2|2191758|34|CP010051|CRISPRCasFinder matches to MN692199 (Pectobacterium phage MA12, complete genome) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tggcggcggtcagggagtcgatggtcttgactaa	Protospacer
 **.******* ************* ..* *  .

10. spacer 2.2|2191758|34|CP010051|CRISPRCasFinder matches to MN518139 (Pectobacterium phage MA11, partial genome) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tggcggcggtcagggagtcgatggtcttgactaa	Protospacer
 **.******* ************* ..* *  .

11. spacer 1.2|1461286|34|CP010051|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.676

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tccacacggtctcggagtggatggtgccgctgtc	Protospacer
     .****** ***** ***********.*.

12. spacer 2.2|2191758|34|CP010051|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.676

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tccacacggtctcggagtggatggtgccgctgtc	Protospacer
     .****** ***** ***********.*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

926173 : 938809

Haemophilus_phage(36.36%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ALR08543.2\|926173_927670_+	hypothetical protein	Q7Y5T5	Haemophilus_phage	3.1e-120	47.4
ALR09959.2\|927679_928117_+	hypothetical protein	Q7Y5T4	Haemophilus_phage	1.8e-44	62.4
ALR08545.2\|928682_929075_+	hypothetical protein	NA	NA	NA	NA
ALR08546.2\|929176_930571_+	hypothetical protein	D0UII2	Aggregatibacter_phage	1.7e-16	33.5
ALR08548.2\|931525_931801_-	addiction module toxin RelE	A0A1S5SB46	Streptococcus_phage	3.5e-14	43.9
ALR08549.2\|931784_932012_-	CopG family transcriptional regulator	NA	NA	NA	NA
ALR08550.2\|932120_932891_+	hypothetical protein	Q7Y5T0	Haemophilus_phage	2.0e-27	33.3
ALR08551.2\|932890_933208_+	hypothetical protein	NA	NA	NA	NA
ALR08552.2\|933204_934035_+	hypothetical protein	D0UIH8	Aggregatibacter_phage	1.4e-77	52.6
ALR08553.2\|934031_934673_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	3.5e-33	38.4
AWG45228.1\|934669_935023_+	hypothetical protein	Q7Y5S5	Haemophilus_phage	1.4e-23	47.0
ALR08554.2\|935078_935372_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	6.2e-09	37.9
ALR08555.2\|935374_935671_-	addiction module antitoxin RelB	A0A141GEX6	Brucella_phage	3.4e-23	53.7
ALR08556.2\|935916_936168_+	hypothetical protein	NA	NA	NA	NA
ALR08557.2\|936271_936718_-	hypothetical protein	NA	NA	NA	NA
ALR08558.2\|936959_937937_-	ABC transporter permease	NA	NA	NA	NA
ALR09960.2\|937933_938809_-	multidrug ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.3e-09	25.2

DBSCAN-SWA_2

1104161 : 1148044

Xylella_phage(21.05%)

tail,head,integrase

attL 1094236:1094249|attR 1132127:1132140

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1094236:1094249	attL	NA	NA	NA	NA
ALR08681.2\|1104161_1105181_-\|integrase	integrase	C8CLF4	Xylella_phage	8.7e-167	87.3
ALR08682.2\|1105180_1105429_-	hypothetical protein	C8CLF5	Xylella_phage	1.0e-33	81.7
ALR08683.2\|1105447_1105903_-	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	4.7e-32	50.3
ALR08684.2\|1105972_1106773_-	hypothetical protein	Q7Y5V4	Haemophilus_phage	1.2e-35	63.8
ALR08685.2\|1107123_1108767_-	hypothetical protein	U6C712	Ralstonia_phage	2.1e-101	39.6
ALR08686.2\|1108763_1109690_-	phage recombination protein Bet	U6C6J0	Ralstonia_phage	2.1e-58	48.9
ALR08687.2\|1109884_1110076_-	hypothetical protein	C8CLG6	Xylella_phage	3.4e-16	70.3
ALR09975.2\|1110099_1110291_-	hypothetical protein	NA	NA	NA	NA
AWG45249.1\|1110287_1110695_-	hypothetical protein	C8CLG7	Xylella_phage	1.0e-46	73.3
ALR08688.2\|1110694_1111153_-	hypothetical protein	NA	NA	NA	NA
ALR08689.2\|1112279_1112468_+	hypothetical protein	NA	NA	NA	NA
ALR08690.2\|1112464_1113076_+	cell filamentation protein Fic	NA	NA	NA	NA
ALR08691.2\|1113126_1113906_-	repressor	D0UIL9	Aggregatibacter_phage	6.3e-08	26.3
ALR08692.2\|1114329_1114719_-	hypothetical protein	NA	NA	NA	NA
ALR08693.2\|1114846_1115035_+	hypothetical protein	NA	NA	NA	NA
ALR08694.2\|1115031_1115280_+	hypothetical protein	NA	NA	NA	NA
ALR08695.2\|1115276_1115642_+	hypothetical protein	NA	NA	NA	NA
ALR08696.2\|1115902_1116520_+	phage antirepressor protein	C8CLH5	Xylella_phage	4.6e-30	53.4
ALR08697.2\|1116526_1117639_+	hypothetical protein	C8CLG1	Xylella_phage	5.6e-111	57.0
AWG45250.1\|1117668_1117944_+	hypothetical protein	A0A0P0I481	Acinetobacter_phage	1.5e-12	45.7
ALR08698.2\|1118771_1119461_+	hypothetical protein	NA	NA	NA	NA
ALR09977.1\|1119508_1119898_+	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	7.4e-10	44.7
ALR08699.2\|1119894_1120593_+	hypothetical protein	C8CLH7	Xylella_phage	1.0e-102	84.3
ALR08700.2\|1121143_1121944_+	hypothetical protein	M4ZRI7	Bacillus_phage	4.2e-15	43.6
AWG45251.1\|1122135_1122636_+	peptidase	I2GUG4	Acinetobacter_phage	3.3e-26	50.7
ALR08701.2\|1122628_1122958_+	hypothetical protein	NA	NA	NA	NA
AWG45252.1\|1122947_1123409_+	hypothetical protein	A0A0S0N8C8	Pseudomonas_phage	2.1e-11	33.6
ALR08702.2\|1123410_1123623_+	hypothetical protein	NA	NA	NA	NA
ALR08703.2\|1123712_1124111_+	hypothetical protein	NA	NA	NA	NA
ALR08704.2\|1124061_1125612_+	hypothetical protein	H9C0C7	Vibrio_phage	4.2e-112	45.1
ALR08706.2\|1126949_1127795_+\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	2.9e-27	31.5
ALR08707.2\|1127794_1128985_+	hypothetical protein	H9C194	Pectobacterium_phage	5.6e-40	41.3
AWG45253.1\|1129503_1130487_+	hypothetical protein	A0A2R3UA82	Siphoviridae_environmental_samples	7.6e-51	39.7
ALR08709.2\|1131201_1131690_+	hypothetical protein	M4SN98	Psychrobacter_phage	4.3e-07	26.0
ALR08710.2\|1131682_1132051_+	hypothetical protein	Q776V7	Haemophilus_phage	1.0e-16	39.1
ALR08711.2\|1132037_1132508_+	hypothetical protein	NA	NA	NA	NA
1132127:1132140	attR	NA	NA	NA	NA
ALR08712.2\|1132508_1134005_+	hypothetical protein	Q7Y5T5	Haemophilus_phage	3.1e-120	47.4
ALR08713.2\|1134014_1134452_+	hypothetical protein	Q7Y5T4	Haemophilus_phage	1.8e-44	62.4
ALR09979.2\|1135017_1136907_+	hypothetical protein	A0A2I7RBK9	Vibrio_phage	2.0e-31	33.6
ALR08714.2\|1137861_1138137_-	addiction module toxin RelE	A0A1S5SB46	Streptococcus_phage	3.5e-14	43.9
ALR08715.2\|1138120_1138348_-	CopG family transcriptional regulator	NA	NA	NA	NA
AWG45254.1\|1138456_1139227_+	hypothetical protein	Q7Y5T0	Haemophilus_phage	2.0e-27	33.3
ALR08716.2\|1139226_1139544_+	hypothetical protein	NA	NA	NA	NA
AWG45255.1\|1139540_1140371_+	hypothetical protein	D0UIH8	Aggregatibacter_phage	1.4e-77	52.6
ALR08717.2\|1140367_1141009_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	3.5e-33	38.4
ALR09980.2\|1141005_1141359_+	hypothetical protein	Q7Y5S5	Haemophilus_phage	3.7e-24	47.8
ALR09981.2\|1141369_1141675_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.1e-11	43.6
AWG45256.1\|1141671_1141974_-	addiction module antitoxin RelB	A0A141GEX6	Brucella_phage	3.4e-26	58.1
ALR08718.2\|1143213_1143774_+	hypothetical protein	A0A0M5M1K4	Salmonella_phage	1.4e-06	26.1
ALR08719.2\|1143777_1144941_+\|tail	phage tail protein	A4PE46	Ralstonia_virus	1.9e-08	32.7
AWG45257.1\|1144937_1145171_-	hypothetical protein	C8CLJ6	Xylella_phage	2.7e-15	58.0
ALR08720.2\|1145170_1145737_-	hypothetical protein	I6R0L8	Salmonella_phage	1.8e-17	32.5
ALR08721.2\|1146004_1146358_-	hypothetical protein	NA	NA	NA	NA
ALR08722.2\|1146365_1147382_-	peptidase M4	NA	NA	NA	NA
ALR08723.2\|1147711_1148044_+	transcriptional regulator	A0A0P0IRJ4	Acinetobacter_phage	7.0e-17	40.7

DBSCAN-SWA_3

1175505 : 1186140

Stenotrophomonas_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ALR08746.2\|1175505_1176579_+	Zonular occludens toxin	Q6UAZ2	Ralstonia_phage	4.3e-23	29.3
ALR08747.2\|1176755_1177004_-	hypothetical protein	NA	NA	NA	NA
ALR08748.2\|1177988_1178267_+	hypothetical protein	NA	NA	NA	NA
ALR08749.2\|1178499_1179651_-	hypothetical protein	S0F3F8	Stenotrophomonas_phage	2.8e-113	59.2
AWG45259.1\|1179655_1180027_-	DUF2523 domain-containing protein	A0A1D6ZIU0	Xanthomonas_phage	3.1e-21	46.8
ALR08750.2\|1180032_1181517_-	hypothetical protein	A0A1W6DXV5	Xanthomonas_phage	5.5e-37	45.3
ALR08751.2\|1181619_1181865_-	hypothetical protein	NA	NA	NA	NA
ALR08752.2\|1181861_1182065_-	hypothetical protein	S0F2M5	Stenotrophomonas_phage	2.8e-16	60.0
AWG45260.1\|1182431_1183607_-	Replication initiation factor	S0F3F7	Stenotrophomonas_phage	5.6e-77	46.1
ALR08753.2\|1184218_1184401_-	hypothetical protein	NA	NA	NA	NA
ALR09983.2\|1184879_1185200_-	hypothetical protein	NA	NA	NA	NA
ALR08754.2\|1185792_1186140_+	hypothetical protein	Q38057	Xanthomonas_phage	1.1e-07	47.5

DBSCAN-SWA_4

1464880 : 1474805

Vibrio_phage(16.67%)

integrase

attL 1459289:1459305|attR 1474231:1474247

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1459289:1459305	attL	NA	NA	NA	NA
ALR08948.2\|1464880_1466092_-\|integrase	integrase	T1S9J3	Salmonella_phage	1.4e-67	39.0
AWG45291.1\|1466233_1466509_-	hypothetical protein	A0A2R3UAA5	Siphoviridae_environmental_samples	2.3e-05	49.1
ALR08949.2\|1466505_1468056_-	hypothetical protein	H9C0C7	Vibrio_phage	1.6e-111	44.9
ALR08950.2\|1468006_1468405_-	hypothetical protein	NA	NA	NA	NA
ALR08952.2\|1468710_1469172_-	hypothetical protein	A0A0S0N8C8	Pseudomonas_phage	1.0e-10	32.8
ALR08953.2\|1469161_1469491_-	hypothetical protein	NA	NA	NA	NA
ALR08954.2\|1469483_1469984_-	peptidase	A0A2I7RLY1	Vibrio_phage	5.0e-27	51.7
ALR08955.2\|1470188_1470527_-	hypothetical protein	K4NZP3	Burkholderia_phage	1.0e-07	54.9
ALR08956.2\|1470513_1470780_-	hypothetical protein	K4NX81	Burkholderia_phage	8.1e-08	40.7
AWG45292.1\|1471661_1472051_-	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	7.4e-10	44.7
ALR08958.2\|1472098_1472788_-	hypothetical protein	NA	NA	NA	NA
ALR08959.2\|1472768_1473620_-	hypothetical protein	A0A142K7R2	Mycobacterium_phage	4.0e-16	60.6
ALR10022.2\|1473616_1473892_-	hypothetical protein	A0A0P0I481	Acinetobacter_phage	1.5e-12	45.7
AWG45293.1\|1473921_1474260_-	hypothetical protein	C8CLG1	Xylella_phage	3.2e-49	83.9
1474231:1474247	attR	NA	NA	NA	NA
ALR08960.2\|1474298_1474538_+	single-stranded DNA-binding protein	NA	NA	NA	NA
ALR08961.2\|1474556_1474805_+	hypothetical protein	C8CLF5	Xylella_phage	2.3e-33	81.7

DBSCAN-SWA_5

1802915 : 1810097

Stenotrophomonas_phage(50.0%)

integrase

attL 1800917:1800968|attR 1810114:1810165

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1800917:1800968	attL	NA	NA	NA	NA
ALR09187.2\|1802915_1804091_+	Replication initiation factor	S0F3F7	Stenotrophomonas_phage	4.3e-77	45.5
AWG45319.1\|1804510_1804831_+	hypothetical protein	NA	NA	NA	NA
AWG45320.1\|1804830_1805040_+	hypothetical protein	S0F2M5	Stenotrophomonas_phage	1.3e-16	65.0
ALR09188.2\|1805036_1805273_+	hypothetical protein	NA	NA	NA	NA
AWG45321.1\|1805411_1806806_+	hypothetical protein	A0A1D6ZIU5	Xanthomonas_phage	6.9e-58	49.2
AWG45322.1\|1806809_1807151_+	DUF2523 domain-containing protein	A0A1D6ZIU0	Xanthomonas_phage	6.3e-21	47.7
ALR09189.2\|1807150_1808284_+	hypothetical protein	S0F3F8	Stenotrophomonas_phage	4.5e-124	58.6
AWG45323.1\|1808432_1808717_+	hypothetical protein	NA	NA	NA	NA
ALR10048.2\|1808771_1809005_-	hypothetical protein	NA	NA	NA	NA
AWG45324.1\|1809266_1810097_+\|integrase	integrase	Q7Y5X7	Haemophilus_phage	2.3e-61	45.4
1810114:1810165	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2071733 : 2105178

Haemophilus_phage(19.23%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ALR09371.2\|2071733_2073371_+	hypothetical protein	A0A2K9L5I4	Tupanvirus	2.3e-12	24.2
ALR09372.2\|2073407_2074040_-	DNA-binding response regulator	NA	NA	NA	NA
ALR09373.2\|2074579_2074786_+	hypothetical protein	C8CLF4	Xylella_phage	7.1e-12	66.0
ALR09374.2\|2074860_2075184_+	hypothetical protein	NA	NA	NA	NA
ALR09376.2\|2076190_2076523_-	transcriptional regulator	A0A0P0IRJ4	Acinetobacter_phage	1.4e-17	40.7
AWG45344.1\|2076927_2077476_+	hypothetical protein	I6R0L8	Salmonella_phage	9.5e-19	39.4
ALR09377.2\|2077435_2077762_+	hypothetical protein	NA	NA	NA	NA
ALR09378.2\|2077761_2078031_+	hypothetical protein	NA	NA	NA	NA
ALR09379.2\|2078044_2078296_+	hypothetical protein	C8CLJ6	Xylella_phage	2.6e-16	63.2
ALR09380.2\|2078273_2079437_-\|tail	phage tail protein	A4PE46	Ralstonia_virus	1.9e-08	32.7
ALR10065.2\|2081233_2081587_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	9.1e-23	47.0
ALR09382.2\|2081583_2082225_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	8.7e-32	37.3
ALR09384.2\|2083047_2083365_-	hypothetical protein	NA	NA	NA	NA
ALR09386.2\|2084191_2084518_+	hypothetical protein	NA	NA	NA	NA
ALR10066.2\|2084514_2084796_+	transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	8.8e-13	51.4
ALR09387.2\|2084854_2086744_-	hypothetical protein	A0A2I7RBK9	Vibrio_phage	1.3e-30	33.1
ALR09388.2\|2086891_2087314_-	hypothetical protein	NA	NA	NA	NA
ALR09389.2\|2087310_2087748_-	hypothetical protein	Q7Y5T4	Haemophilus_phage	8.8e-44	61.7
ALR09390.2\|2087757_2089254_-	hypothetical protein	Q7Y5T5	Haemophilus_phage	3.3e-122	47.8
ALR09391.2\|2089254_2089725_-	hypothetical protein	NA	NA	NA	NA
ALR09392.2\|2089711_2090080_-	hypothetical protein	Q776V7	Haemophilus_phage	1.0e-16	37.7
ALR09393.2\|2090066_2090546_-	hypothetical protein	M4SN98	Psychrobacter_phage	1.9e-07	26.7
ALR09394.2\|2090542_2090911_-	hypothetical protein	Q7Y5T9	Haemophilus_phage	1.5e-12	37.4
ALR09395.2\|2090913_2091213_-	hypothetical protein	NA	NA	NA	NA
ALR09396.2\|2091278_2092262_-	hypothetical protein	A0A2R3UA82	Siphoviridae_environmental_samples	9.9e-51	39.3
ALR09397.2\|2092271_2092754_-	hypothetical protein	NA	NA	NA	NA
ALR09398.2\|2092781_2093972_-	hypothetical protein	H9C194	Pectobacterium_phage	5.6e-40	41.3
ALR09399.2\|2094727_2095930_-	hypothetical protein	L7TRA1	Rhizobium_phage	2.4e-54	35.2
ALR09400.2\|2096154_2097705_-	hypothetical protein	H9C0C7	Vibrio_phage	9.3e-112	45.1
AWG45345.1\|2097655_2098054_-	hypothetical protein	NA	NA	NA	NA
AWG45346.1\|2098359_2098821_-	hypothetical protein	A0A0S0N8C8	Pseudomonas_phage	1.0e-10	32.8
AWG45347.1\|2098810_2099140_-	hypothetical protein	NA	NA	NA	NA
AWG45348.1\|2099132_2099633_-	peptidase	A0A2I7RLY1	Vibrio_phage	5.0e-27	51.7
ALR09402.2\|2099815_2100097_+	excinuclease ABC subunit A	NA	NA	NA	NA
ALR09403.2\|2100106_2100406_+	addiction module antidote protein, HigA family	M9MUN2	Rhodococcus_phage	1.1e-13	45.9
ALR10068.2\|2101182_2101572_-	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	7.4e-10	44.7
AWG45349.1\|2101619_2102309_-	hypothetical protein	NA	NA	NA	NA
ALR09405.2\|2103136_2103412_-	hypothetical protein	A0A0P0I481	Acinetobacter_phage	1.5e-12	45.7
ALR09406.2\|2103441_2104554_-	hypothetical protein	C8CLG1	Xylella_phage	5.6e-111	57.0
ALR09407.2\|2104560_2105178_-	phage antirepressor protein	C8CLH5	Xylella_phage	4.6e-30	53.4

DBSCAN-SWA_7

2111709 : 2120395

Xylella_phage(18.18%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWG45350.1\|2111709_2112111_+	hypothetical protein	C8CLG7	Xylella_phage	2.6e-58	85.0
ALR09420.2\|2112107_2112299_+	hypothetical protein	NA	NA	NA	NA
ALR09421.2\|2112322_2112514_+	hypothetical protein	C8CLG6	Xylella_phage	4.1e-14	67.2
ALR09422.2\|2112534_2112879_+	hypothetical protein	U5P4J6	Shigella_phage	1.4e-15	46.5
ALR09423.2\|2112918_2113740_+	hypothetical protein	K7ZMK3	Xanthomonas_citri_phage	3.0e-53	43.3
ALR09424.2\|2113755_2114682_+	phage recombination protein Bet	U6C6J0	Ralstonia_phage	1.0e-57	48.6
ALR09425.2\|2114678_2116322_+	hypothetical protein	U6C712	Ralstonia_phage	1.1e-99	38.2
ALR09426.2\|2116672_2117467_+	hypothetical protein	A0A077KC96	Edwardsiella_phage	2.3e-34	65.7
ALR09427.2\|2117475_2118009_+	hypothetical protein	Q5QF30	Pseudomonas_virus	5.0e-25	36.3
ALR09428.2\|2118356_2119184_+	hypothetical protein	A4PE61	Ralstonia_virus	1.3e-19	44.4
ALR09429.2\|2119180_2119894_+	DNA-binding protein	G0ZND1	Cronobacter_phage	2.5e-43	58.9
ALR09430.2\|2119951_2120395_+	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	2.9e-34	53.2

DBSCAN-SWA_8

2305041 : 2365233

Escherichia_phage(25.0%)

tail,tRNA,capsid,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ALR09551.2\|2305041_2305776_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
ALR09552.2\|2305772_2306567_-	thiazole synthase	NA	NA	NA	NA
ALR09553.2\|2306615_2306816_-	sulfur carrier protein ThiS	NA	NA	NA	NA
ALR09554.2\|2306957_2308751_+	esterase	NA	NA	NA	NA
ALR09556.2\|2309143_2309386_-	hypothetical protein	NA	NA	NA	NA
ALR09557.2\|2309517_2310042_-	hypothetical protein	NA	NA	NA	NA
ALR09558.2\|2310198_2312292_+	hypothetical protein	A0A1R3Y5Q6	Salmonella_virus	1.0e-92	37.2
ALR10086.2\|2312652_2313087_-	phosphotransferase	NA	NA	NA	NA
ALR10087.2\|2313064_2315431_-	hypothetical protein	NA	NA	NA	NA
ALR09559.2\|2315626_2316250_-	fatty acyl CoA synthetase	NA	NA	NA	NA
ALR09560.2\|2316197_2317178_-	acyltransferase	NA	NA	NA	NA
ALR10088.2\|2317174_2317462_-	hypothetical protein	NA	NA	NA	NA
ALR09561.2\|2317511_2317703_-	hypothetical protein	NA	NA	NA	NA
ALR09562.2\|2317703_2318444_-	ketosynthase	NA	NA	NA	NA
ALR10089.2\|2318418_2318688_-	acyl carrier protein	NA	NA	NA	NA
ALR09563.2\|2319051_2320032_+	pteridine-dependent deoxygenase	NA	NA	NA	NA
ALR09564.2\|2320457_2321753_+	TIGR01244 family protein	NA	NA	NA	NA
ALR09565.2\|2321746_2322091_+	transcriptional regulator	NA	NA	NA	NA
AWG45368.1\|2322087_2322495_+	hypothetical protein	NA	NA	NA	NA
AWG45369.1\|2322491_2322932_+	hypothetical protein	NA	NA	NA	NA
ALR09566.2\|2322928_2323714_+	hypothetical protein	NA	NA	NA	NA
AWG45370.1\|2324286_2324862_+	dCTP deaminase	S5VM63	Pseudomonas_phage	2.8e-69	67.7
ALR09567.2\|2325130_2326093_-	hypothetical protein	NA	NA	NA	NA
ALR09568.2\|2326092_2327952_-	DNA mismatch repair protein MutL	A0A1B2LRQ5	Wolbachia_phage	4.0e-85	36.2
ALR09570.2\|2329764_2330253_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
ALR09572.2\|2331762_2331984_+	hypothetical protein	NA	NA	NA	NA
AWG45371.1\|2332188_2333523_+	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	2.5e-36	34.5
ALR09573.2\|2333588_2334446_-	virulence factor	NA	NA	NA	NA
ALR09574.2\|2334572_2336411_-	serine/threonine kinase	A0A075BSL8	Microcystis_phage	1.4e-26	34.8
ALR09575.2\|2336497_2337586_+	ribonuclease D	NA	NA	NA	NA
ALR09576.2\|2337864_2338269_+	histone-like nucleoid-structuring protein	NA	NA	NA	NA
ALR09577.2\|2339054_2340110_-	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	NA	NA	NA	NA
AWG45372.1\|2341805_2342162_-	MerR family transcriptional regulator	NA	NA	NA	NA
AWG45373.1\|2342142_2342442_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.6e-12	40.4
AWG45374.1\|2342465_2344844_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
ALR09578.2\|2344927_2345923_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	9.7e-30	35.5
ALR09579.2\|2346200_2346560_-	50S ribosomal protein L20	NA	NA	NA	NA
ALR09580.2\|2346570_2346768_-	50S ribosomal protein L35	NA	NA	NA	NA
ALR09581.2\|2347013_2347493_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.3e-11	34.0
ALR09582.2\|2347608_2349516_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.3e-126	37.5
ALR09583.2\|2349581_2349794_-	hypothetical protein	NA	NA	NA	NA
ALR09584.2\|2349761_2350064_+	hypothetical protein	NA	NA	NA	NA
ALR09586.2\|2351676_2351895_-\|tail	phage tail protein	NA	NA	NA	NA
ALR09587.2\|2351891_2352374_-\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	1.2e-28	47.6
AWG45375.1\|2354715_2355003_-	hypothetical protein	A0A193GYZ8	Enterobacter_phage	6.9e-13	43.4
AWG45376.1\|2355005_2355515_-\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	1.2e-47	52.7
AWG45377.1\|2355514_2356693_-\|tail	phage tail protein	A0A088FVH5	Escherichia_phage	4.4e-138	56.3
ALR09589.2\|2356757_2358350_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	5.4e-83	36.2
ALR10090.2\|2358357_2358915_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	5.1e-52	54.4
ALR09590.2\|2358907_2359801_-\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	4.7e-68	45.8
ALR09591.2\|2359800_2360139_-\|plate	phage baseplate protein	A0A088FV58	Escherichia_phage	4.6e-32	60.4
ALR09592.2\|2360356_2360659_+	toxin-antitoxin system, toxin component	NA	NA	NA	NA
ALR09593.2\|2360661_2361063_+	antitoxin	NA	NA	NA	NA
ALR09594.2\|2361131_2361719_-\|plate	baseplate assembly protein	NA	NA	NA	NA
ALR09595.2\|2361715_2362258_-	hypothetical protein	D5LGZ6	Escherichia_phage	1.7e-36	42.9
ALR09596.2\|2362233_2362755_-	hypothetical protein	D5LGZ7	Escherichia_phage	2.8e-12	33.9
ALR09597.2\|2362751_2363075_-	hypothetical protein	NA	NA	NA	NA
ALR09598.2\|2363074_2363335_-	hypothetical protein	NA	NA	NA	NA
ALR09599.2\|2363352_2365233_-\|capsid	major capsid protein	V5YSS9	Pseudomonas_phage	4.2e-167	48.4

DBSCAN-SWA_9

2375672 : 2392704

Xylella_phage(100.0%)

integrase

attL 2374737:2374751|attR 2396035:2396049

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2374737:2374751	attL	NA	NA	NA	NA
ALR09609.2\|2375672_2376455_-	hypothetical protein	C8CLH5	Xylella_phage	5.5e-28	59.7
ALR09610.2\|2377146_2377479_+	hypothetical protein	NA	NA	NA	NA
ALR09611.2\|2377548_2377797_-	hypothetical protein	NA	NA	NA	NA
ALR09612.2\|2377793_2377982_-	hypothetical protein	NA	NA	NA	NA
ALR10093.2\|2378035_2378260_-	hypothetical protein	NA	NA	NA	NA
ALR09613.2\|2378361_2378667_+	hypothetical protein	NA	NA	NA	NA
AWG45378.1\|2378663_2378864_-	Rha family transcriptional regulator	NA	NA	NA	NA
ALR09614.2\|2378937_2379708_+	peptidase S24	C8CLH0	Xylella_phage	6.0e-27	34.5
ALR09615.2\|2379876_2380416_+	hypothetical protein	NA	NA	NA	NA
ALR09616.2\|2380452_2380764_+	hypothetical protein	NA	NA	NA	NA
ALR09617.2\|2381125_2381437_-	hypothetical protein	NA	NA	NA	NA
ALR09618.2\|2381512_2381902_+	hypothetical protein	C8CLG9	Xylella_phage	1.0e-06	37.5
ALR09619.2\|2381898_2382300_+	hypothetical protein	C8CLG8	Xylella_phage	1.1e-11	68.3
ALR10094.2\|2382299_2382701_+	hypothetical protein	C8CLG7	Xylella_phage	2.8e-44	67.7
ALR09620.2\|2382697_2382892_+	hypothetical protein	C8CLG6	Xylella_phage	2.7e-21	79.7
ALR09621.2\|2382923_2383196_+	hypothetical protein	NA	NA	NA	NA
ALR10095.2\|2383192_2383384_+	hypothetical protein	C8CLG5	Xylella_phage	1.1e-14	76.8
ALR09622.2\|2383437_2383881_+	hypothetical protein	C8CLG4	Xylella_phage	1.0e-31	74.3
ALR09623.2\|2383877_2385155_+	hypothetical protein	C8CLG3	Xylella_phage	1.9e-195	80.6
ALR09624.2\|2385154_2385721_+	hypothetical protein	C8CLG2	Xylella_phage	3.5e-101	95.7
ALR09625.2\|2386188_2386947_+	antirepressor	C8CLG1	Xylella_phage	4.7e-133	91.7
ALR09626.2\|2386948_2389129_+	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	91.2
ALR09627.2\|2389125_2389404_+	hypothetical protein	C8CLF9	Xylella_phage	2.5e-44	96.7
AWG45379.1\|2389405_2389801_-	DUF1640 domain-containing protein	NA	NA	NA	NA
ALR09628.2\|2389864_2391283_+	hypothetical protein	C8CLF7	Xylella_phage	6.4e-261	92.8
ALR09629.2\|2391436_2391685_+	hypothetical protein	C8CLF5	Xylella_phage	3.0e-33	80.5
ALR09630.2\|2391684_2392704_+\|integrase	integrase	C8CLF4	Xylella_phage	1.6e-165	86.4
2396035:2396049	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP010051

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection