CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP014050	Salmonella enterica strain LT2 plasmid unnamed, complete sequence	0 crisprs	cas14j	0	0	1	0
CP014051	Salmonella enterica strain LT2 chromosome, complete genome	0 crisprs	DEDDh,RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DinG	0	0	10	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

77275 : 86571

Escherichia_phage(28.57%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG24349.2\|77275_77692_+	hypothetical protein	O64348	Escherichia_phage	8.2e-07	42.9
AMG24348.1\|77875_78211_+	hypothetical protein	NA	NA	NA	NA
AMG24326.1\|78267_78834_+	DUF2913 domain-containing protein	NA	NA	NA	NA
AMG24327.1\|78865_79807_-\|transposase	ISNCY family transposase	Q2A0A7	Sodalis_phage	2.0e-72	54.3
AMG24328.1\|80221_81427_+	ParA family protein	A0A077SL49	Escherichia_phage	1.5e-162	69.3
AMG24329.2\|81423_82401_+	chromosome partitioning protein ParB	A0A1B0V750	Salmonella_phage	5.2e-84	53.2
AMG24330.1\|82482_83757_-	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.0e-156	64.5
AMG24331.1\|83756_84179_-	protein SamA	A0A1W6JNS2	Morganella_phage	1.0e-28	51.6
AVH82161.1\|84689_85160_+	hypothetical protein	NA	NA	NA	NA
AMG24332.1\|85152_85509_+	hypothetical protein	NA	NA	NA	NA
AMG24333.1\|85557_85746_+	hypothetical protein	NA	NA	NA	NA
AMG24334.1\|85890_86571_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP014051

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1192363 : 1239407

Burkholderia_phage(40.91%)

tRNA,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG25383.1\|1192363_1193362_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
AMG25384.1\|1193449_1194760_-	conjugal transfer protein	NA	NA	NA	NA
AMG25385.1\|1195006_1195522_+	transcriptional regulator Zur	NA	NA	NA	NA
AMG25386.1\|1195620_1195830_-	CsbD family protein	NA	NA	NA	NA
AMG25387.2\|1195851_1195965_-	hypothetical protein	NA	NA	NA	NA
AMG25388.1\|1195961_1197287_-	MATE family efflux transporter	NA	NA	NA	NA
AMG25389.1\|1197465_1198074_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
AMG25390.1\|1198182_1198551_-	diacylglycerol kinase	NA	NA	NA	NA
AMG25391.1\|1198721_1201142_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
AMG25392.1\|1201240_1202113_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
AMG25393.1\|1202126_1202624_-	chorismate--pyruvate lyase	NA	NA	NA	NA
AMG25394.1\|1202804_1203722_-	maltose operon protein MalM	NA	NA	NA	NA
AMG25395.1\|1203885_1205244_-	maltoporin	NA	NA	NA	NA
AMG25396.1\|1205332_1206442_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
AMG25397.1\|1206803_1207994_+	maltose-binding periplasmic protein	NA	NA	NA	NA
AMG25398.1\|1208125_1209670_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
AMG25399.1\|1209684_1210575_+	maltose ABC transporter permease	NA	NA	NA	NA
AMG25400.1\|1210740_1211151_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
AMG25401.1\|1211293_1213390_-	YjbH domain-containing protein	NA	NA	NA	NA
AMG25402.1\|1213389_1214127_-	hypothetical protein	NA	NA	NA	NA
AMG25403.1\|1214123_1214762_-	YjbF family lipoprotein	NA	NA	NA	NA
AMG25404.1\|1214825_1215068_-	outer membrane protein	NA	NA	NA	NA
AMG25405.1\|1215511_1217161_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
AMG25406.1\|1217505_1218855_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
AMG25407.1\|1218987_1219335_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
AMG25408.1\|1219910_1220198_+	hypothetical protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
AMG25409.1\|1220200_1220806_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	4.2e-60	59.9
AMG25410.1\|1220818_1221133_+	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
AMG25411.1\|1221292_1221748_+	hypothetical protein	NA	NA	NA	NA
AMG25412.1\|1221744_1221942_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
AMG25413.1\|1221931_1223359_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
AMG25414.1\|1223358_1223883_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
AMG25415.1\|1223934_1224252_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AVH82214.1\|1224211_1224340_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
AMG25416.1\|1224436_1226791_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.0e-66	30.6
AMG25417.1\|1226790_1227744_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
AMG25418.1\|1227743_1227953_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
AMG25419.1\|1227940_1228984_+	phage protein D	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
AMG25420.1\|1228993_1229716_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
AMG25421.1\|1230043_1230406_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
AMG25422.1\|1230402_1231332_+	glycosyltransferase	S5FKN0	Shigella_phage	8.8e-150	83.8
AMG25423.1\|1231331_1232879_+	hypothetical protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
AMG25424.1\|1233042_1233402_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
AMG25425.1\|1233392_1234508_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
AMG25426.1\|1234500_1235133_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
AMG25427.1\|1235135_1236881_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	3.2e-52	52.2
AMG25428.1\|1236885_1237491_+	DUF4376 domain-containing protein	NA	NA	NA	NA
AMG25429.1\|1237487_1237943_+	hypothetical protein	NA	NA	NA	NA
AMG25430.1\|1238191_1238482_+	hypothetical protein	NA	NA	NA	NA
AMG25431.1\|1238678_1239407_+	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3

DBSCAN-SWA_2

2745489 : 2842073

Salmonella_phage(85.11%)

transposase,plate,portal,integrase,capsid,tRNA,tail,head

attL 2779329:2779375|attR 2813022:2813068

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG26760.2\|2745489_2746652_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.2e-51	41.9
AMG26762.1\|2746930_2748913_+	DNA helicase	NA	NA	NA	NA
AMG26763.1\|2748909_2749548_+	hypothetical protein	NA	NA	NA	NA
AVH82270.1\|2751261_2751858_-\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	2.6e-99	91.3
AMG26767.2\|2752435_2753719_+	hypothetical protein	NA	NA	NA	NA
AMG26768.1\|2753978_2755853_-	hypothetical protein	NA	NA	NA	NA
AMG26769.1\|2756018_2756894_-\|integrase	integrase	NA	NA	NA	NA
AMG26770.1\|2757828_2758011_-	hypothetical protein	NA	NA	NA	NA
AMG26771.1\|2758010_2759690_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
AMG26772.1\|2759912_2761454_+	PTS glucose transporter subunit IIABC	NA	NA	NA	NA
AMG26773.1\|2761583_2762426_+	cytoplasmic protein	NA	NA	NA	NA
AMG28797.2\|2762422_2762989_+	6-phospho-3-hexuloisomerase	NA	NA	NA	NA
AMG26774.1\|2763012_2763648_+	3-hexulose-6-phosphate synthase	NA	NA	NA	NA
AMG26775.1\|2763721_2764924_-	hexulose-6-phosphate synthase	NA	NA	NA	NA
AMG26776.1\|2765218_2766232_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
AMG26777.1\|2766242_2767223_-	PTS sorbitol transporter subunit IIB	NA	NA	NA	NA
AMG26778.1\|2767219_2767594_-	PTS sorbitol transporter	NA	NA	NA	NA
AMG26779.1\|2767590_2768112_-	PTS sorbitol transporter subunit IIC	NA	NA	NA	NA
AMG26780.1\|2768224_2768509_-	transcriptional regulator	A0A2I7S995	Vibrio_phage	5.4e-18	64.7
AMG26781.2\|2768603_2768960_+	XRE family transcriptional regulator	NA	NA	NA	NA
AMG26782.2\|2769113_2769932_-	hypothetical protein	NA	NA	NA	NA
AMG26783.1\|2769976_2771260_-	ATPase	NA	NA	NA	NA
AMG26784.1\|2771762_2773832_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	1.7e-73	35.1
AMG26785.1\|2773867_2774083_-	AlpA family transcriptional regulator	NA	NA	NA	NA
AMG26786.2\|2774533_2775361_+	hypothetical protein	NA	NA	NA	NA
AMG26787.2\|2775695_2776889_-	hypothetical protein	NA	NA	NA	NA
AMG26788.2\|2777278_2777872_-	hypothetical protein	NA	NA	NA	NA
2779329:2779375	attL	NA	NA	NA	NA
AMG26791.1\|2779492_2780518_-\|integrase	integrase	A0A1S6L016	Salmonella_phage	9.9e-203	100.0
AMG26792.1\|2780521_2781154_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.4e-66	58.6
AMG26793.1\|2781270_2781510_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	8.8e-38	98.7
AMG26794.1\|2781545_2782055_+	hypothetical protein	A0A1S6L008	Salmonella_phage	5.1e-83	92.9
AMG26795.1\|2782062_2782296_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	3.6e-12	59.1
AMG26796.1\|2782243_2782702_-	hypothetical protein	NA	NA	NA	NA
AMG26797.1\|2782921_2783263_+	hypothetical protein	E5G6L5	Salmonella_phage	4.2e-49	85.0
AMG26798.1\|2783330_2783564_+	hypothetical protein	A0A1S6L021	Salmonella_phage	2.0e-26	84.4
AMG26799.1\|2783563_2783791_+	hypothetical protein	A0A1S6L007	Salmonella_phage	1.3e-35	93.3
AMG26800.1\|2783787_2784645_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.7e-129	80.4
AMG26801.1\|2784635_2787065_+	replication endonuclease from prophage-like region	A0A1S6L028	Salmonella_phage	0.0e+00	91.8
AMG26802.1\|2787217_2787406_+	hypothetical protein	E5G6M0	Salmonella_phage	1.4e-27	100.0
AMG26803.2\|2787344_2787650_+	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
AVH82271.1\|2787709_2788441_+	hypothetical protein	NA	NA	NA	NA
AMG26804.2\|2788654_2790406_+	AIPR family protein	NA	NA	NA	NA
AMG26805.1\|2790491_2791532_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.4e-188	93.0
AMG26806.1\|2791531_2793298_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	97.3
AMG26807.1\|2793440_2794274_+\|capsid	capsid protein	E5G6M5	Salmonella_phage	3.1e-130	100.0
AMG26808.1\|2794290_2795373_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.6e-190	97.7
AMG26809.1\|2795376_2796030_+	hypothetical protein	A0A1S6KZX1	Salmonella_phage	4.6e-113	98.6
AMG26810.1\|2796123_2796588_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.9e-84	98.1
AMG26811.1\|2796587_2796791_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.1e-33	98.5
AMG26812.1\|2796794_2797010_+	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
AMG26813.1\|2796990_2797500_+	lysozyme	A0A1S6KZY9	Salmonella_phage	3.5e-92	97.6
AMG26814.1\|2797876_2798305_+	hypothetical protein	A0A1S6KZX8	Salmonella_phage	2.6e-64	95.0
AMG26815.1\|2798400_2798832_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.1e-75	99.3
AMG26816.1\|2798824_2799271_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.9e-65	89.0
AMG26817.1\|2799339_2799918_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	3.3e-107	98.4
AMG26818.1\|2799914_2800274_+\|plate	baseplate assembly protein	E5G6N7	Salmonella_phage	8.0e-59	98.3
AMG26819.1\|2800260_2801169_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.7e-159	99.0
AMG26820.1\|2801161_2801767_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	4.1e-116	98.0
AMG26821.1\|2801763_2803338_+\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	2.1e-156	60.7
AMG26822.2\|2803307_2803925_+\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	4.1e-95	84.6
AMG26823.1\|2803928_2804336_-\|tail	phage tail protein	A0A1B0V844	Salmonella_phage	2.2e-60	84.4
AMG26824.2\|2804342_2805422_-	hypothetical protein	A0A1B0V7G4	Salmonella_phage	5.4e-183	92.1
AMG26825.1\|2805391_2805949_+	recombinase family protein	A0A1S6L009	Salmonella_phage	8.0e-98	97.8
AMG26826.1\|2806051_2807224_+\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	5.7e-223	99.7
AMG26827.1\|2807233_2807749_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	7.9e-92	98.8
AMG26828.1\|2807803_2808106_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	9.4e-45	99.0
AMG26829.1\|2808120_2808240_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	8.8e-15	97.4
AMG26830.1\|2808232_2811040_+\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	0.0e+00	99.7
AMG26831.1\|2811036_2811522_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	98.5
AMG26832.1\|2811518_2812619_+	late control protein D	A0A1S6KZZ5	Salmonella_phage	3.4e-193	98.1
AMG26833.1\|2812687_2812906_+	levansucrase regulator	Q53ZE7	Salmonella_virus	2.1e-38	100.0
AMG26834.2\|2813457_2814621_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
2813022:2813068	attR	NA	NA	NA	NA
AMG26835.1\|2814628_2816809_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
AMG26836.1\|2816805_2818215_-	type I secretion protein TolC	NA	NA	NA	NA
AMG26837.1\|2818279_2829754_-	Ig-like domain repeat protein	NA	NA	NA	NA
AMG28799.1\|2830367_2830850_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
AMG26838.1\|2830999_2831476_+	ubiquinone-binding protein	NA	NA	NA	NA
AMG26839.1\|2831465_2831756_+	RnfH family protein	NA	NA	NA	NA
AMG26840.1\|2831921_2832260_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AMG26841.1\|2832408_2834070_-	DNA repair protein RecN	NA	NA	NA	NA
AMG26842.1\|2834155_2835034_-	NAD(+) kinase	NA	NA	NA	NA
AVH82390.1\|2834965_2835160_+	molecular chaperone GrpE	NA	NA	NA	NA
AMG26843.1\|2835156_2835747_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
AMG26844.1\|2835781_2836387_-	cytoplasmic protein	NA	NA	NA	NA
AMG26845.1\|2836507_2837749_-	DUF21 domain-containing protein	NA	NA	NA	NA
AMG26846.1\|2837813_2838605_-	inner membrane protein YpjD	NA	NA	NA	NA
AVH82272.1\|2838550_2838847_-	hypothetical protein	NA	NA	NA	NA
AMG26847.1\|2838770_2840132_+	signal recognition particle protein	NA	NA	NA	NA
AMG26848.1\|2840445_2840694_+	30S ribosomal protein S16	NA	NA	NA	NA
AMG26849.1\|2840712_2841261_+	ribosome maturation factor RimM	NA	NA	NA	NA
AMG26850.1\|2841305_2842073_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_3

2868883 : 2943386

Salmonella_phage(42.11%)

holin,protease,transposase,terminase,lysis,portal,integrase,capsid,tRNA,tail,head

attL 2860964:2860980|attR 2949233:2949249

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2860964:2860980	attL	NA	NA	NA	NA
AMG26870.1\|2868883_2869921_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
AMG26871.1\|2870036_2870726_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
AMG26872.1\|2871044_2871428_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
AMG26873.1\|2871489_2872077_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA
AMG26874.2\|2872179_2873079_+	LysR family transcriptional regulator	NA	NA	NA	NA
AMG26875.1\|2873096_2874431_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
AMG26876.1\|2874561_2875299_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	NA	NA	NA	NA
AMG26877.1\|2875283_2876906_-	L-aspartate oxidase	NA	NA	NA	NA
AVH82274.1\|2876990_2877170_+	hypothetical protein	NA	NA	NA	NA
AMG26878.1\|2877330_2877906_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
AMG26879.1\|2877937_2878588_+	anti-sigma-E factor RseA	NA	NA	NA	NA
AMG26880.1\|2878587_2879544_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
AMG26881.1\|2879540_2880020_+	SoxR reducing system protein RseC	NA	NA	NA	NA
AVH82275.1\|2880049_2880166_+	transcriptional regulator	NA	NA	NA	NA
AMG26882.1\|2880517_2881747_+\|integrase	integrase	H6WRW7	Salmonella_phage	2.9e-233	94.4
AMG26883.1\|2881724_2882009_-	excisionase Xis	H6WRW8	Salmonella_phage	3.1e-42	86.2
AMG26884.1\|2882049_2882289_-	DUF4060 domain-containing protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AMG26885.2\|2882331_2883489_-	enterohemolysin	S4TTE8	Salmonella_phage	7.9e-217	99.7
AMG26886.1\|2883451_2886379_-	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	99.3
AMG26887.2\|2886505_2886856_-	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
AMG26888.1\|2886877_2887036_-	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
AVH82276.1\|2887028_2887289_-	hypothetical protein	NA	NA	NA	NA
AMG26889.1\|2887338_2887749_-	transcriptional regulator	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
AMG26890.1\|2887868_2888108_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
AMG26891.2\|2888073_2888448_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
AMG26892.1\|2888532_2889516_+	hypothetical protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
AMG26893.1\|2889518_2890268_+	DNA replication protein DnaC	S4TNF5	Salmonella_phage	3.6e-138	99.6
AMG26894.1\|2890278_2890626_+	DNA-binding protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
AMG26895.1\|2890622_2890934_+	hypothetical protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
AMG26896.2\|2891011_2891302_+	hypothetical protein	NA	NA	NA	NA
AMG26897.1\|2891593_2891827_+	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
AMG26898.1\|2891938_2892160_+	hypothetical protein	NA	NA	NA	NA
AMG26899.1\|2892242_2892845_+	hypothetical protein	S4TTI0	Salmonella_phage	1.1e-108	98.5
AMG26900.1\|2892844_2893051_+	hypothetical protein	S4TNP0	Salmonella_phage	1.7e-34	97.1
AMG26901.1\|2893053_2893665_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
AMG26902.1\|2893661_2893802_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
AMG26903.1\|2893798_2894476_+	antiterminator	I6PDF8	Cronobacter_phage	7.7e-63	54.0
AVH82277.1\|2894472_2894658_+	hypothetical protein	NA	NA	NA	NA
AMG26904.1\|2894748_2895312_+	hypothetical protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
AMG26905.1\|2895818_2896007_+	hypothetical protein	NA	NA	NA	NA
AMG26906.1\|2896221_2896908_-\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	7.9e-132	99.6
AMG26907.2\|2897183_2897513_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
AMG26908.2\|2897496_2897949_+	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
AMG26909.2\|2897966_2898419_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
AMG26910.1\|2898654_2899056_-	inhibitor of g-type lysozyme	NA	NA	NA	NA
AVH82278.1\|2899090_2899285_+	hypothetical protein	NA	NA	NA	NA
AMG26911.1\|2899342_2899888_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
AMG26912.1\|2899859_2901791_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
AMG26913.1\|2901774_2901978_+\|tail	phage tail protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
AMG26914.1\|2901974_2903555_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
AMG26915.1\|2903544_2905041_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
AMG26916.1\|2905053_2905401_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
AMG26917.1\|2905455_2906484_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
AMG26918.1\|2906541_2906901_+	DNA packaging protein	NA	NA	NA	NA
AMG26919.1\|2906911_2907295_+\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
AMG26920.1\|2907322_2907901_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
AMG28800.2\|2907949_2909200_-\|transposase	transposase	Q9G0F2	Phage_Gifsy-1	7.8e-218	100.0
AMG26921.1\|2909188_2909590_+\|tail	phage tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
AMG26922.2\|2909597_2910344_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
AMG26923.1\|2910394_2910790_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
AMG26924.2\|2910786_2911125_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
AMG26925.1\|2911096_2914192_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
AMG26926.1\|2914194_2914524_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
AMG26927.1\|2914533_2915232_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
AMG26928.2\|2915238_2915976_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
AMG26929.1\|2915873_2916521_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
AMG26930.1\|2916582_2919945_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
AMG26931.1\|2919983_2920226_+	hypothetical protein	NA	NA	NA	NA
AMG26932.1\|2920279_2922652_+\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	1.1e-90	65.6
AMG26933.1\|2922648_2923473_+\|tail	phage tail protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
AMG26934.1\|2923462_2924041_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
AMG28801.2\|2924137_2924365_-	phage virulence factor	NA	NA	NA	NA
AVH82279.1\|2924471_2924684_+	hypothetical protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
AVH82392.1\|2924746_2924812_+	hypothetical protein	NA	NA	NA	NA
AMG26935.1\|2925476_2926022_-\|transposase	transposase	NA	NA	NA	NA
AVH82280.1\|2926268_2926406_-	hypothetical protein	NA	NA	NA	NA
AMG26936.2\|2926908_2928402_-	type III secretion system protein	Q9MBM1	Phage_Gifsy-1	3.4e-260	100.0
AMG26937.1\|2928806_2930606_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
AMG26938.1\|2930622_2931597_+	S26 family signal peptidase	NA	NA	NA	NA
AMG28802.1\|2931870_2932551_+	ribonuclease 3	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
AMG26939.1\|2932547_2933453_+	GTPase Era	NA	NA	NA	NA
AMG26940.1\|2933464_2934193_+	DNA repair protein RecO	NA	NA	NA	NA
AMG26941.1\|2934204_2934936_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
AMG26942.1\|2934935_2935316_+	holo-ACP synthase	NA	NA	NA	NA
AMG26943.1\|2935427_2935688_-	ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.4e-17	52.3
AMG26944.1\|2935725_2936652_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.0e-09	24.4
AMG26945.1\|2936767_2937964_+	MFS transporter	NA	NA	NA	NA
AMG26946.1\|2937985_2938903_+	oxidoreductase	NA	NA	NA	NA
AMG26947.1\|2938941_2939790_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AMG26948.1\|2939905_2940799_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
AMG26949.1\|2940809_2942171_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
AMG26950.1\|2942174_2942810_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA
AMG26951.1\|2942834_2943386_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
2949233:2949249	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3314127 : 3326418

Salmonella_phage(45.45%)

holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG27262.1\|3314127_3316494_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7
AMG28812.1\|3316822_3317812_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	6.0e-189	97.3
AMG27264.2\|3317826_3318195_+	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
AMG27265.1\|3318223_3319555_-	NTPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
AMG27266.1\|3319851_3320181_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
AVH82298.1\|3320773_3322015_+	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
AMG27268.1\|3322017_3322545_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
AMG27269.1\|3322922_3323366_+\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
AMG27270.1\|3323419_3325249_-	acyltransferase	C6ZR20	Salmonella_phage	3.0e-61	29.6
AMG28813.2\|3325596_3325887_-	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
AMG28814.2\|3325914_3326418_+	DNA polymerase V	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3

DBSCAN-SWA_5

3398470 : 3407641

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG27335.1\|3398470_3399418_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
AMG27336.1\|3399401_3400133_+	ABC transporter permease	NA	NA	NA	NA
AMG27337.1\|3400113_3400221_-	hypothetical protein	NA	NA	NA	NA
AMG27338.1\|3400280_3401012_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AMG27339.1\|3401234_3402920_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
AMG27340.1\|3402916_3403636_+	DNA-binding response regulator	NA	NA	NA	NA
AMG27341.1\|3403682_3404150_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AMG27342.1\|3404206_3404737_-	hypothetical protein	NA	NA	NA	NA
AMG27343.1\|3404908_3405367_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AMG27344.1\|3405607_3407641_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_6

3475949 : 3486455

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG27399.1\|3475949_3477353_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	27.1
AMG27400.1\|3477530_3478424_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AMG27401.1\|3478800_3479886_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
AMG27402.1\|3479885_3480785_+	NAD(P)-dependent oxidoreductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
AMG28817.1\|3480832_3481711_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	9.3e-109	65.5
AMG27403.2\|3481711_3482263_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
AMG27404.1\|3482268_3483261_+	protein RfbI	NA	NA	NA	NA
AMG27405.1\|3483257_3484031_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AMG27406.1\|3484035_3485115_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
AMG27407.1\|3485141_3486455_+	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_7

3572449 : 3583052

Morganella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG27492.1\|3572449_3572923_-	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	7.1e-39	77.6
AMG27494.1\|3573570_3573861_-	DUF4102 domain-containing protein	H2BDA3	Pseudomonas_phage	3.0e-08	49.1
AMG27495.1\|3574232_3575030_-	protein MtfA	NA	NA	NA	NA
AVH82307.1\|3575290_3575533_+	hypothetical protein	NA	NA	NA	NA
AMG27496.1\|3575510_3575672_+	hypothetical protein	NA	NA	NA	NA
AMG27497.1\|3575798_3576218_+	protein UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AMG27498.1\|3576220_3577489_+	protein UmuC	I6RSM4	Salmonella_phage	4.2e-227	92.2
AMG27499.1\|3577943_3578156_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AVH82400.1\|3578166_3578355_+	cold-shock protein	NA	NA	NA	NA
AMG27500.1\|3578615_3579812_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
AMG27501.2\|3580461_3580761_+	hypothetical protein	NA	NA	NA	NA
AMG27502.1\|3580852_3581548_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
AMG27503.1\|3581621_3583052_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_8

3687096 : 3717322

Escherichia_phage(18.18%)

protease,tail,integrase

attL 3690958:3690972|attR 3709445:3709459

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG27611.1\|3687096_3687327_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
AMG27612.1\|3687464_3687839_+	CopC domain-containing protein YobA	NA	NA	NA	NA
AMG28822.2\|3687839_3688715_+	hypothetical protein	NA	NA	NA	NA
AMG27613.1\|3688731_3689085_+	DUF2511 domain-containing protein	NA	NA	NA	NA
AMG28823.2\|3689142_3689262_+	hypothetical protein	NA	NA	NA	NA
AVH82401.1\|3689458_3690313_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.6e-73	50.9
AMG27614.2\|3690372_3690867_-	RecE	A0A0U2I1R6	Escherichia_phage	8.2e-22	68.9
3690958:3690972	attL	NA	NA	NA	NA
AMG27615.1\|3691056_3691287_+	lytic enzyme	Q8HA86	Salmonella_phage	6.1e-28	93.7
AMG27616.1\|3691340_3691874_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
AMG27617.1\|3692130_3692298_-	lytic enzyme	NA	NA	NA	NA
AVH82310.1\|3692362_3692551_-	hypothetical protein	NA	NA	NA	NA
AMG27618.1\|3693023_3693905_+\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
AMG27619.1\|3694001_3694202_-	phage virulence factor	NA	NA	NA	NA
AVH82311.1\|3694392_3694509_-\|tail	phage tail protein	NA	NA	NA	NA
AVH82312.1\|3694771_3694897_+	arsenic transporter	NA	NA	NA	NA
AMG27620.1\|3696044_3696659_-	disulfide bond formation protein B	NA	NA	NA	NA
AMG28825.2\|3696668_3696827_-	hypothetical protein	NA	NA	NA	NA
AMG27621.1\|3696959_3697874_-	protein PagO	NA	NA	NA	NA
AVH82402.1\|3698491_3698692_+	hypothetical protein	NA	NA	NA	NA
AVH82313.1\|3698982_3699240_+	hypothetical protein	NA	NA	NA	NA
AMG27622.1\|3699177_3699546_-\|integrase	integrase	K7PHK0	Enterobacteria_phage	5.4e-18	39.8
AMG27623.1\|3701009_3701150_-	hypothetical protein	NA	NA	NA	NA
AVH82314.1\|3701315_3701585_-	hypothetical protein	Q6UAV5	Klebsiella_phage	1.5e-06	39.0
AVH82315.1\|3701631_3701826_+	hypothetical protein	NA	NA	NA	NA
AMG27625.1\|3701954_3702374_+	N-acetyltransferase	NA	NA	NA	NA
AMG27626.1\|3702761_3703238_-	hypothetical protein	NA	NA	NA	NA
AMG27627.1\|3703567_3703963_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	9.2e-16	32.8
AMG27628.1\|3704646_3705369_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
AMG27629.1\|3705653_3705818_+	hypothetical protein	NA	NA	NA	NA
AMG27630.1\|3706041_3706692_+	serine/threonine-protein phosphatase 1	A0A222YWF0	Escherichia_phage	1.1e-58	51.4
AMG27631.1\|3706710_3706902_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AMG27632.1\|3707012_3707252_-	DUF1480 domain-containing protein	NA	NA	NA	NA
AMG28826.1\|3707366_3708806_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AMG27633.2\|3708883_3711523_-	MCE family protein	NA	NA	NA	NA
3709445:3709459	attR	NA	NA	NA	NA
AMG27634.1\|3711485_3712769_-	paraquat-inducible protein A	NA	NA	NA	NA
AMG27635.2\|3712810_3713395_+	GAF domain-containing protein	NA	NA	NA	NA
AMG27636.1\|3713492_3714179_+	RNA chaperone ProQ	NA	NA	NA	NA
AMG27637.1\|3714198_3716247_+\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
AMG27638.1\|3716440_3717322_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_9

4481161 : 4565896

Salmonella_phage(44.64%)

holin,protease,terminase,lysis,portal,integrase,tRNA,tail

attL 4505255:4505274|attR 4577042:4577061

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG28358.1\|4481161_4481842_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.3e-81	70.6
AVH82350.1\|4482187_4482397_-	hypothetical protein	NA	NA	NA	NA
AMG28359.1\|4482462_4483122_+	transmembrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.3e-43	51.9
AMG28360.1\|4483208_4483538_+	sulfurtransferase TusE	NA	NA	NA	NA
AMG28361.1\|4483534_4483816_-	acylphosphatase	NA	NA	NA	NA
AMG28362.1\|4483864_4484644_-	AraC family transcriptional regulator	NA	NA	NA	NA
AMG28363.1\|4484669_4485218_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
AMG28364.1\|4485432_4486644_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA
AMG28365.1\|4486701_4487019_+	heat-shock protein HspQ	NA	NA	NA	NA
AMG28366.2\|4487063_4487480_-	CoA-binding protein	NA	NA	NA	NA
AMG28367.1\|4487650_4488313_+	DUF2057 domain-containing protein	NA	NA	NA	NA
AMG28368.1\|4488407_4488866_+	methylglyoxal synthase	NA	NA	NA	NA
AMG28369.1\|4488901_4490956_-	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
AMG28370.1\|4491079_4491526_+	YccF domain-containing protein	NA	NA	NA	NA
AMG28371.1\|4491544_4493698_+	TIGR01666 family membrane protein	NA	NA	NA	NA
AMG28372.1\|4493684_4494290_-	DNA transformation protein	NA	NA	NA	NA
AMG28373.1\|4494506_4495016_+	cell division inhibitor SulA	NA	NA	NA	NA
AMG28860.1\|4495372_4496425_+	outer membrane protein A	NA	NA	NA	NA
AMG28374.1\|4496496_4496949_-	macrodomain Ter protein	NA	NA	NA	NA
AMG28375.1\|4497134_4498895_+\|protease	Lon protease family protein	NA	NA	NA	NA
AMG28376.1\|4498963_4499482_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
AMG28377.1\|4499581_4499749_-	ribosome modulation factor	NA	NA	NA	NA
AMG28378.1\|4500004_4500568_-	hypothetical protein	NA	NA	NA	NA
AMG28379.1\|4500564_4502205_-	intermembrane transport protein PqiB	NA	NA	NA	NA
AMG28380.1\|4502209_4503463_-	paraquat-inducible protein A	NA	NA	NA	NA
AMG28381.1\|4503477_4505385_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
4505255:4505274	attL	NA	NA	NA	NA
AMG28382.1\|4505397_4507506_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
AMG28383.1\|4507604_4508714_+	MOSC domain-containing protein	NA	NA	NA	NA
AMG28384.1\|4508710_4509253_-	cell division protein ZapC	NA	NA	NA	NA
AMG28385.1\|4509418_4510429_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
AMG28386.1\|4510636_4513249_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
AMG28387.1\|4513675_4513867_+	DNA-damage-inducible protein I	S4TNM0	Salmonella_phage	6.2e-26	95.2
AMG28388.1\|4514137_4514824_+	virulence protein	NA	NA	NA	NA
AMG28389.1\|4514808_4515108_+	hypothetical protein	NA	NA	NA	NA
AMG28390.1\|4515176_4515803_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
AMG28392.1\|4516450_4517419_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.9e-194	99.7
AMG28393.1\|4517894_4518476_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
AMG28394.1\|4518475_4520914_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	2.9e-91	63.4
AMG28395.1\|4520967_4521210_-	hypothetical protein	NA	NA	NA	NA
AMG28396.2\|4521248_4522124_-	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	1.1e-48	77.1
AMG28397.1\|4522150_4524598_-	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	68.0
AMG28398.1\|4524669_4525374_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
AMG28399.1\|4525271_4526009_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
AMG28400.1\|4526018_4526714_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
AMG28401.1\|4526803_4527337_+	superoxide dismutase [Cu-Zn] SodC1	Q9MC02	Salmonella_phage	1.8e-46	54.0
AMG28402.1\|4527453_4527951_-	Ail/OmpX	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
AMG28861.2\|4528049_4528382_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
AMG28862.2\|4528378_4531366_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	8.2e-266	62.1
AMG28403.2\|4531445_4531775_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
AMG28404.1\|4531771_4532170_-\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
AMG28405.1\|4532215_4532965_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
AMG28406.1\|4532976_4533378_-\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
AMG28407.1\|4533374_4533941_-\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
AMG28408.1\|4533921_4534221_-	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
AMG28409.1\|4534213_4534537_-	recombinase RecA	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
AMG28863.2\|4534627_4536709_-	peptidase S14	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
AMG28410.2\|4536632_4538150_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	1.5e-175	65.1
AMG28411.1\|4538176_4538383_-	primosomal replication protein PriB/PriC domain protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
AMG28412.2\|4538379_4540518_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
AMG28413.1\|4540474_4541008_-	DNA breaking-rejoining protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
AMG28864.1\|4541215_4541695_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
AMG28414.2\|4541712_4542165_-	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
AMG28415.2\|4542148_4542478_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
AMG28416.1\|4542753_4543440_+\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
AMG28417.1\|4543800_4544250_+	hypothetical protein	NA	NA	NA	NA
AMG28418.1\|4544385_4544511_-	hypothetical protein	NA	NA	NA	NA
AMG28419.1\|4544684_4545002_-	hypothetical protein	NA	NA	NA	NA
AMG28420.1\|4545068_4545866_-	antitermination protein	A0A0M4S661	Salmonella_phage	2.3e-151	99.6
AMG28421.1\|4545855_4546002_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
AMG28422.1\|4545998_4546610_-	protein NinG	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
AMG28423.1\|4546612_4546819_-	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
AMG28424.1\|4546818_4547421_-	hypothetical protein	S4TTI0	Salmonella_phage	8.3e-109	98.5
AVH82351.1\|4547503_4547725_-	hypothetical protein	NA	NA	NA	NA
AMG28425.1\|4547836_4548070_-	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
AMG28426.2\|4548361_4548652_-	hypothetical protein	NA	NA	NA	NA
AMG28427.1\|4548729_4549041_-	hypothetical protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
AMG28428.1\|4549037_4549385_-	DNA-binding protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
AMG28429.1\|4549395_4550145_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	3.6e-138	99.6
AMG28430.1\|4550147_4551131_-	hypothetical protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
AMG28431.2\|4551215_4551590_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
AMG28432.1\|4551555_4551795_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
AMG28433.1\|4551914_4552325_+	transcriptional regulator	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
AVH82352.1\|4552374_4552635_+	hypothetical protein	NA	NA	NA	NA
AMG28434.1\|4552627_4552786_+	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
AMG28435.2\|4552807_4553107_+	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
AMG28436.1\|4553233_4556119_+	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	97.4
AMG28437.2\|4556081_4557239_+	enterohemolysin	S4TTE8	Salmonella_phage	1.6e-217	100.0
AMG28438.1\|4557281_4557521_+	DUF4060 domain-containing protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AMG28439.1\|4557561_4557810_+	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AMG28440.1\|4557854_4559147_+\|integrase	integrase	S4TSP2	Salmonella_phage	1.0e-252	99.8
AMG28441.1\|4559341_4560544_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
AMG28442.1\|4560621_4562058_-	sodium:alanine symporter family protein	NA	NA	NA	NA
AMG28443.1\|4562302_4563517_-	PLP-dependent lyase/thiolase	NA	NA	NA	NA
AMG28444.1\|4563603_4563837_+	hypothetical protein	NA	NA	NA	NA
AMG28445.1\|4563833_4564295_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AMG28446.1\|4564495_4565896_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
4577042:4577061	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4592553 : 4696332

105

Escherichia_phage(30.65%)

holin,protease,transposase,terminase,lysis,portal,integrase,tRNA,tail

attL 4584298:4584314|attR 4700576:4700592

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4584298:4584314	attL	NA	NA	NA	NA
AMG28467.1\|4592553_4593315_-\|protease	metalloprotease	NA	NA	NA	NA
AMG28468.1\|4593457_4594741_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
AMG28469.1\|4594811_4595900_-	3-phosphoserine/phosphohydroxythreonine aminotransferase	M1Q1P2	Streptococcus_phage	1.2e-78	46.5
AMG28470.1\|4596085_4596778_-	DUF421 domain-containing protein	NA	NA	NA	NA
AMG28865.1\|4596914_4598675_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
AMG28471.1\|4599079_4599937_+	formate transporter FocA	NA	NA	NA	NA
AMG28472.1\|4599996_4602279_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.1e-161	42.0
AMG28473.1\|4602354_4603314_-	SPI-2 type III secretion system effector SopD2	NA	NA	NA	NA
AVH82353.1\|4603444_4603771_+	cytoplasmic protein	NA	NA	NA	NA
AMG28474.2\|4603862_4604687_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	2.8e-22	26.5
AMG28475.1\|4604979_4606401_-	amino acid permease	NA	NA	NA	NA
AMG28476.1\|4606618_4607767_-	MFS transporter	NA	NA	NA	NA
AMG28478.1\|4608116_4608980_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
AMG28479.1\|4608981_4609599_-	dimethylsulfoxide reductase, chain B	A0A077SL61	Escherichia_phage	4.3e-76	59.6
AMG28480.1\|4609609_4612054_-	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	5.4e-223	50.5
AMG28481.1\|4612290_4613583_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.6e-95	44.5
AMG28482.1\|4613841_4615185_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.6e-80	40.9
AMG28483.1\|4615194_4615806_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
AMG28866.1\|4615948_4620004_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	2.9e-88	49.5
AMG28484.1\|4620138_4620633_-	leucine-responsive regulatory protein	NA	NA	NA	NA
AVH82354.1\|4620561_4620837_+	hypothetical protein	NA	NA	NA	NA
AMG28485.1\|4621178_4622147_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.1e-62	45.5
AMG28486.1\|4622260_4624027_+	thiol reductant ABC exporter subunit CydD	W8CYL7	Bacillus_phage	6.0e-22	25.1
AMG28487.1\|4624027_4625749_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	8.4e-13	23.5
AMG28488.1\|4625793_4626498_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AMG28489.1\|4626498_4626882_+	hypothetical protein	NA	NA	NA	NA
AMG28490.1\|4626809_4627028_+	translation initiation factor IF-1	NA	NA	NA	NA
AMG28491.1\|4627118_4628030_-	LysR family transcriptional regulator	NA	NA	NA	NA
AMG28492.1\|4628138_4628999_+	pirin family protein	NA	NA	NA	NA
AMG28493.1\|4629018_4629696_+	hydrolase	NA	NA	NA	NA
AVH82355.1\|4630032_4631287_+\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	5.4e-17	33.9
AMG28496.1\|4631750_4632209_-\|transposase	IS200/IS605 family transposase IS200F	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
AVH82356.1\|4632165_4632348_-	hypothetical protein	NA	NA	NA	NA
AMG28497.1\|4632400_4634677_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AMG28498.1\|4634707_4635028_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AMG28499.1\|4635351_4635573_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AVH82357.1\|4635527_4635722_-	hypothetical protein	NA	NA	NA	NA
AMG28500.1\|4635702_4637649_-	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
AMG28501.1\|4637645_4638764_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
AMG28502.2\|4638891_4639860_+	DUF535 domain-containing protein	NA	NA	NA	NA
AMG28503.1\|4639856_4641515_-	ATP-dependent endonuclease	NA	NA	NA	NA
AVH82412.1\|4641550_4641739_-	hypothetical protein	NA	NA	NA	NA
AMG28504.1\|4641716_4642616_+	DUF340 domain-containing protein	NA	NA	NA	NA
AMG28505.1\|4642759_4644412_+	hydroxylamine reductase	NA	NA	NA	NA
AMG28506.1\|4644423_4645392_+	NADH oxidoreductase	NA	NA	NA	NA
AMG28507.1\|4645549_4647268_+	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	1.7e-29	24.4
AMG28508.1\|4647306_4648308_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
AMG28509.1\|4648318_4649752_+	DUF2867 domain-containing protein	NA	NA	NA	NA
AMG28510.1\|4649847_4650861_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AMG28511.1\|4650857_4651688_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	1.8e-08	30.7
AMG28512.1\|4651684_4652008_-	hypothetical protein	NA	NA	NA	NA
AVH82358.1\|4652993_4653215_+	PerC family transcriptional regulator	NA	NA	NA	NA
AMG28514.2\|4654048_4655287_+	sialidase	NA	NA	NA	NA
AMG28515.1\|4655357_4655933_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	5.2e-92	86.8
AMG28516.1\|4655932_4658305_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	5.8e-89	64.2
AMG28517.2\|4658348_4661795_-	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	69.8
AMG28518.1\|4661888_4662413_+	superoxide dismutase [Cu-Zn] SodC2	Q9MC02	Salmonella_phage	1.3e-97	100.0
AMG28519.2\|4662466_4663144_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	3.0e-67	67.6
AMG28520.1\|4663041_4663776_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.7e-114	77.4
AMG28521.1\|4663787_4664483_-\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	3.2e-96	71.4
AMG28522.1\|4664614_4665133_-	Ail/OmpX	H6WZM8	Escherichia_phage	3.1e-11	30.2
AMG28523.1\|4665259_4665589_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	2.2e-39	68.5
AMG28524.1\|4665588_4668750_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	4.3e-257	55.7
AMG28525.2\|4668721_4669039_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.6e-31	65.1
AMG28526.1\|4669056_4669461_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	6.3e-28	54.1
AMG28527.1\|4669505_4670249_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	6.2e-98	75.6
AMG28528.1\|4670259_4670661_-\|tail	phage tail protein	A0A291AWY2	Escherichia_phage	4.9e-49	66.9
AMG28867.2\|4670657_4671242_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	4.5e-75	77.1
AMG28529.1\|4671245_4671521_-	DNA breaking-rejoining protein	NA	NA	NA	NA
AMG28530.1\|4671513_4671837_-	DUF2190 domain-containing protein	K7PLV6	Enterobacteria_phage	1.0e-28	63.2
AMG28531.2\|4671925_4674046_-	peptidase S14	A5LH30	Enterobacteria_phage	1.3e-276	72.1
AMG28532.1\|4673963_4675499_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	3.7e-177	63.1
AMG28533.1\|4675495_4675702_-	primosomal replication protein PriB/PriC domain protein	A5LH28	Enterobacteria_phage	1.4e-07	48.6
AMG28534.1\|4675698_4677807_-\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	1.5e-293	70.6
AMG28535.1\|4677793_4678285_-	DNA breaking-rejoining protein	Q9EYD0	Enterobacteria_phage	2.6e-44	57.5
AMG28868.1\|4678339_4678561_+	hypothetical protein	NA	NA	NA	NA
AMG28536.1\|4678636_4678828_+	hypothetical protein	NA	NA	NA	NA
AMG28537.1\|4679119_4679605_-\|lysis	lysis protein	Q8HA85	Salmonella_phage	5.7e-76	93.8
AMG28538.1\|4679601_4680216_-	endolysin	Q8HA86	Salmonella_phage	1.4e-108	93.1
AMG28539.1\|4680218_4680563_-\|holin	phage holin, lambda family	Q8HA87	Salmonella_phage	5.3e-44	100.0
AMG28540.2\|4681152_4681551_-	hypothetical protein	NA	NA	NA	NA
AMG28541.1\|4682608_4683001_+	hypothetical protein	NA	NA	NA	NA
AMG28542.1\|4683155_4683971_-	antitermination protein	A0A1B5FPA5	Escherichia_phage	3.7e-112	72.3
AMG28543.1\|4683967_4684828_-	helix-turn-helix domain containing protein	A0A1B5FPA6	Escherichia_phage	1.0e-136	84.6
AMG28544.1\|4684827_4685796_-	DNA primase	A0A1B5FPA8	Escherichia_phage	1.9e-179	95.3
AMG28869.2\|4685792_4687421_-	ATP-dependent helicase	A0A1B5FPA4	Escherichia_phage	7.1e-272	83.4
AMG28545.1\|4687533_4687902_-	hypothetical protein	A0A1B5FPB1	Escherichia_phage	4.5e-57	88.5
AMG28546.2\|4688142_4688439_-	hypothetical protein	A0A1B5FPB9	Escherichia_phage	4.9e-30	74.2
AMG28547.1\|4688401_4688656_-	XRE family transcriptional regulator	A0A2H4JEY0	uncultured_Caudovirales_phage	7.5e-11	52.9
AMG28548.1\|4688768_4689464_+	helix-turn-helix transcriptional regulator	F1C5C2	Cronobacter_phage	7.4e-85	67.5
AMG28549.1\|4689642_4689960_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	3.0e-17	51.0
AMG28550.1\|4689952_4690147_+	hypothetical protein	NA	NA	NA	NA
AMG28551.1\|4690143_4690329_+	hypothetical protein	NA	NA	NA	NA
AMG28552.1\|4690516_4690726_+	hypothetical protein	NA	NA	NA	NA
AMG28553.2\|4690649_4691066_+	hypothetical protein	A0A1B5FPB3	Escherichia_phage	1.4e-27	55.7
AMG28554.1\|4691065_4691302_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	4.5e-26	76.7
AMG28555.1\|4691291_4691687_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	6.7e-51	74.6
AMG28556.1\|4691641_4692034_+	hypothetical protein	F1C5A3	Cronobacter_phage	5.9e-23	76.1
AMG28558.1\|4692272_4692497_+	hypothetical protein	A0A1B5FPG2	Escherichia_phage	1.9e-18	65.3
AMG28559.1\|4692493_4692802_+	hypothetical protein	A0A1B5FPC7	Escherichia_phage	2.1e-15	80.8
AVH82359.1\|4692801_4693017_+	hypothetical protein	NA	NA	NA	NA
AMG28870.1\|4693167_4693410_+	excisionase	G9L654	Escherichia_phage	1.8e-22	62.8
AMG28561.2\|4693437_4694763_+\|integrase	integrase	Q20GI2	Phage_258-320	3.2e-169	65.9
AMG28562.1\|4694858_4695374_+	lipoprotein	NA	NA	NA	NA
AMG28563.1\|4695603_4696332_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	5.1e-28	35.8
4700576:4700592	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP014050

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP014051

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection