CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP014039	Vibrio harveyi strain ATCC 43516 chromosome 2, complete sequence	0 crisprs	csa3,DEDDh,cas3,csx1	0	0	2	0
CP014038	Vibrio harveyi strain ATCC 43516 chromosome 1, complete sequence	0 crisprs	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,csa3,cas3,DinG,csx1	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1960065 : 1987617

Hokovirus(40.0%)

protease,transposase,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG01070.1\|1960065_1961391_+\|transposase	IS4 family transposase	NA	NA	NA	NA
AMG01071.1\|1961584_1961992_+	hypothetical protein	NA	NA	NA	NA
AMG01072.1\|1962086_1962404_+	hypothetical protein	NA	NA	NA	NA
AMG01073.1\|1962489_1963167_-	DedA family protein	NA	NA	NA	NA
AMG01074.1\|1963217_1963625_-	hypothetical protein	NA	NA	NA	NA
AMG01075.1\|1963762_1964281_-	DUF4136 domain-containing protein	NA	NA	NA	NA
AUW38386.1\|1964388_1964589_+	hypothetical protein	NA	NA	NA	NA
AMG01076.1\|1964862_1965270_-	hypothetical protein	NA	NA	NA	NA
AMG01077.1\|1965373_1966231_-	sterol desaturase family protein	NA	NA	NA	NA
AMG01078.1\|1966240_1967251_-	DUF2804 domain-containing protein	NA	NA	NA	NA
AMG01079.1\|1967746_1968214_-	peroxiredoxin	NA	NA	NA	NA
AMG01080.1\|1968334_1970695_-	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	5.8e-57	34.6
AMG01081.1\|1970687_1971665_-	cytochrome B6	NA	NA	NA	NA
AMG01452.2\|1971903_1975527_+	sensor histidine kinase	A0A1V0SGX0	Hokovirus	2.1e-34	27.1
AMG01082.1\|1975527_1976670_+	diguanylate phosphodiesterase	NA	NA	NA	NA
AMG01083.1\|1976713_1978396_+	hypothetical protein	NA	NA	NA	NA
AMG01084.1\|1979067_1980435_+\|protease	serine protease	NA	NA	NA	NA
AMG01085.1\|1980444_1981236_+	hypothetical protein	J3IZE5	Acanthamoeba_polyphaga_lentillevirus	2.4e-23	28.5
AMG01086.1\|1981323_1981728_-	globin	NA	NA	NA	NA
AMG01087.1\|1982015_1982672_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
AMG01088.1\|1982835_1984020_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-26	35.2
AMG01089.1\|1984021_1984864_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
AMG01090.1\|1984926_1985865_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
AMG01091.1\|1985907_1987617_-\|holin	choline dehydrogenase	A0A1V0S9J5	Catovirus	3.6e-48	28.6

DBSCAN-SWA_2

2254755 : 2279855

Vibrio_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG01324.1\|2254755_2256750_+	DDE endonuclease	M4M9R2	Vibrio_phage	3.4e-268	70.2
AMG01325.1\|2256785_2257730_+	DNA transposition protein	M4M9P4	Vibrio_phage	5.1e-129	75.6
AMG01326.1\|2257902_2258316_+	hypothetical protein	NA	NA	NA	NA
AMG01327.1\|2258312_2258705_+	hypothetical protein	NA	NA	NA	NA
AMG01328.1\|2258701_2259103_+	hypothetical protein	NA	NA	NA	NA
AMG01329.1\|2259102_2259390_+	hypothetical protein	NA	NA	NA	NA
AMG01330.1\|2259373_2259577_+	hypothetical protein	NA	NA	NA	NA
AMG01331.1\|2259580_2260207_+	DUF3164 domain-containing protein	A4JWM8	Burkholderia_virus	3.3e-36	40.0
AMG01332.1\|2260220_2260703_-	hypothetical protein	NA	NA	NA	NA
AMG01333.1\|2260732_2261218_+	hypothetical protein	M4MHH2	Vibrio_phage	3.1e-37	55.1
AMG01334.1\|2261228_2261432_+	hypothetical protein	NA	NA	NA	NA
AMG01335.1\|2261518_2261749_+	hypothetical protein	A0A2I7S9D2	Vibrio_phage	2.2e-17	56.6
AUW38396.1\|2261758_2262025_+	hypothetical protein	NA	NA	NA	NA
AMG01463.1\|2262017_2262536_+	regulatory protein GemA	A0A2I7S9B8	Vibrio_phage	3.6e-52	60.4
AMG01336.1\|2262528_2262777_+	hypothetical protein	NA	NA	NA	NA
AMG01337.2\|2262845_2263226_+	transcriptional regulator	M4MHG9	Vibrio_phage	3.5e-28	49.6
AMG01338.1\|2263301_2263868_+	peptidoglycan-binding protein	A0A2I7S9B9	Vibrio_phage	9.0e-73	71.0
AMG01339.1\|2263867_2264140_+	hypothetical protein	A0A2I7S9C2	Vibrio_phage	9.8e-17	56.0
AMG01340.1\|2264124_2264724_+	hypothetical protein	M1NVP4	Vibrio_phage	5.6e-41	51.0
AMG01464.1\|2264747_2264978_+	conjugal transfer protein TraR	NA	NA	NA	NA
AMG01341.1\|2264964_2265264_+	DUF2730 domain-containing protein	NA	NA	NA	NA
AMG01342.1\|2265272_2265566_+	hypothetical protein	A0A2I7S9D8	Vibrio_phage	7.0e-37	79.8
AMG01343.1\|2265575_2266145_+	DUF3486 domain-containing protein	M4MCR3	Vibrio_phage	6.7e-52	61.2
AMG01344.1\|2266144_2267794_+	hypothetical protein	A0A0C4UR29	Shigella_phage	3.4e-213	68.1
AMG01465.1\|2267809_2269372_+	DUF935 domain-containing protein	C9DGN6	Escherichia_phage	1.8e-123	48.4
AMG01466.1\|2269382_2270792_+	F protein	A0A2H4IYU7	uncultured_Caudovirales_phage	3.2e-63	51.0
AMG01345.1\|2270788_2270992_+	hypothetical protein	NA	NA	NA	NA
AMG01346.1\|2270991_2271465_+	phage virion morphogenesis protein	NA	NA	NA	NA
AMG01347.1\|2271698_2272826_+	hypothetical protein	A0A0C4UQU6	Shigella_phage	5.1e-67	40.7
AMG01348.1\|2272841_2273231_+	hypothetical protein	NA	NA	NA	NA
AMG01349.1\|2273272_2274166_+	hypothetical protein	J9SVY7	Pseudomonas_phage	7.5e-74	46.1
AMG01350.1\|2274230_2274638_+	hypothetical protein	A0A0C4UQZ0	Shigella_phage	2.7e-10	41.1
AMG01351.1\|2274640_2275069_+	DUF1320 domain-containing protein	A0A0M3LP98	Mannheimia_phage	2.5e-14	34.8
AMG01352.1\|2275065_2275503_+	hypothetical protein	NA	NA	NA	NA
AMG01353.1\|2275492_2276422_+	hypothetical protein	K7XS75	uncultured_Mediterranean_phage	6.7e-33	33.3
AMG01354.1\|2276447_2276780_+	hypothetical protein	G8EY05	Synechococcus_phage	4.4e-11	35.2
AMG01355.1\|2276794_2277115_+	hypothetical protein	NA	NA	NA	NA
AMG01356.1\|2277098_2279855_+	hypothetical protein	A0A1C6ZDP8	Pseudomonas_phage	4.8e-18	24.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP014038

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

935385 : 942311

Vibrio_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMF97042.2\|935385_936378_-	hypothetical protein	G3M9Z1	Bacillus_virus	1.4e-07	39.1
AMF97043.1\|936825_937182_-	hypothetical protein	NA	NA	NA	NA
AMF97044.1\|937460_937817_+	hypothetical protein	NA	NA	NA	NA
AMF99382.1\|938665_938866_-	hypothetical protein	U3PDF9	Vibrio_phage	6.9e-12	54.8
AMF97045.1\|939201_940410_-	replication protein A	NA	NA	NA	NA
AMF97046.1\|940632_940842_-	hypothetical protein	A0A2I7RNH0	Vibrio_phage	3.3e-12	54.2
AMF97047.1\|940838_941249_-	hypothetical protein	A0A2I7RNG1	Vibrio_phage	4.9e-36	56.8
AMF97048.1\|941307_941520_-	hypothetical protein	U3PFJ1	Vibrio_phage	7.8e-22	70.0
AMF97049.1\|941669_942311_+	chromosome partitioning protein ParA	A0A166YHA0	Vibrio_phage	1.4e-74	64.2

DBSCAN-SWA_2

1421829 : 1439485

uncultured_Mediterranean_phage(18.18%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMF97454.1\|1421829_1424412_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	5.0e-78	37.7
AMF97455.1\|1424554_1425022_-	recombination regulator RecX	NA	NA	NA	NA
AMF97456.1\|1425228_1426272_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	3.1e-111	60.4
AMF97457.1\|1426473_1426956_-	damage-inducible protein CinA	B5TK85	Pseudomonas_phage	2.4e-26	47.5
AMF97458.1\|1427041_1429603_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	4.4e-34	22.8
AMF97459.1\|1429696_1430680_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.9e-36	35.2
AMF97460.1\|1430760_1431684_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	2.4e-06	36.4
AMF97461.1\|1431698_1432325_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.4e-37	53.9
AMF99398.2\|1432324_1433101_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	7.0e-68	54.1
AMF97462.1\|1433100_1434144_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
AMF97463.1\|1434189_1434666_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AMF97464.1\|1434680_1435391_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	1.8e-06	24.0
AMF97465.1\|1435392_1435674_-	cell division protein FtsB	NA	NA	NA	NA
AMF97466.1\|1436465_1437767_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	3.5e-136	60.3
AMF97467.1\|1437844_1439485_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	9.4e-155	51.9

DBSCAN-SWA_3

2611712 : 2618779

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMF98450.1\|2611712_2612927_+	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	9.7e-32	30.2
AMF98451.1\|2612964_2613348_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
AMF98452.1\|2613421_2613745_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.0e-25	51.4
AMF98453.1\|2613800_2614316_+	co-chaperone protein HscB	NA	NA	NA	NA
AMF98454.1\|2614337_2616191_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.6e-110	40.0
AMF98455.1\|2616204_2616543_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
AMF98456.1\|2616587_2616782_+	Fe-S assembly protein IscX	NA	NA	NA	NA
AMF98457.1\|2616954_2618253_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	9.1e-36	34.7
AMF98458.1\|2618353_2618779_+	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	2.7e-21	40.6

DBSCAN-SWA_4

2729417 : 2736101

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMF98541.1\|2729417_2730557_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.9e-62	41.7
AMF98542.1\|2730574_2731825_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.3e-99	48.2
AMF98543.1\|2731952_2732402_+	transcriptional regulator NrdR	NA	NA	NA	NA
AMF98544.1\|2732409_2733534_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	5.4e-45	35.7
AMF98545.1\|2733545_2734199_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.1e-34	38.0
AMF98546.1\|2734351_2735461_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.8e-64	40.1
AMF98547.1\|2735630_2736101_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP014039

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP014038

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection